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3548 Commits

Author SHA1 Message Date
Dana Robinson
a3faa92653 Merge branch 'develop' into openmpi_tweaks 2018-12-30 22:24:42 -08:00
Vailin Choi
e035c7abdd Changes based on feedback from pull request. 2018-12-31 00:11:45 -06:00
Vailin Choi
f808c108ed Fix for HDFFV-10659: The library abort with "infinite loop closing library" 
after deleting attributes in densed storage.
The fix: When deleting attribute nodes from the name index v2 B-tree,
if an attribute is found in the intermediate B-tree nodes, which may be
merged/redistributed in the process, we need to free the dynamically
allocated spaces for the intermediate decoded attribute.
 2018-12-28 16:49:11 -06:00
Dana Robinson
3ca19cca53 Flipped swapped testing strings. 2018-12-28 12:56:49 -08:00
Jacob Smith
f54fb420d0 Merge branch 'develop' into dset_ohdr_minimize 2018-12-28 12:45:10 -06:00
Dana Robinson
75dd3c9cab Merge branch 'develop' into yay_plugins 2018-12-27 22:20:09 -08:00
Dana Robinson
3a05e7109a Added test_vol_plugin.sh to the list of scripts to clean 2018-12-27 21:42:51 -08:00
Jordan Henderson
fe30b71086 Merge pull request #1386 in HDFFV/hdf5 from ~JHENDERSON/hdf5:develop to develop 
* commit 'b4fe787bb9fe4bfc4709a124df59dd987c9a09d2':
  Add test for H5Arename NULL/empty attribute name fix
  align H5Arename behavior with H5Arename_by_name
 2018-12-27 23:05:20 -06:00
Dana Robinson
fafee5b8ae Fixed a CMake build issue (CMake still doesn't run the VOL plugin 
tests)
 2018-12-27 19:56:21 -08:00
Dana Robinson
544ab1c78a Added more sub-tests to the VOL plugin test. 2018-12-27 19:42:02 -08:00
Dana Robinson
621014be28 Added a simple test for registration of VOL connector plugins. 
Autotools only for right now, but this will be fleshed out in future
work.
 2018-12-27 15:50:04 -08:00
Jacob Smith
29497cc4e1 Merge branch 'develop' into dset_ohdr_minimize 2018-12-27 12:33:32 -06:00
Jacob Smith
b2afa88fa0 OHDR tests now accept h5_fileaccess() fapls. 
Formatting, informative comments, and minor renaming.
 2018-12-26 14:35:22 -06:00
Jacob Smith
cfdbb220d8 Fix some CMake listings 2018-12-21 16:18:05 -06:00
Jacob Smith
db9cc49a6b Add error checking to the minimized dset header size calculation. 
Update printf->HDprintf statements.
 2018-12-21 15:47:49 -06:00
Allen Byrne
7d28a4295e Merge pull request #1407 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop 
* commit '991996b25122ff010b9af1bbb6cc05be491ce038':
  Remove unused CMake files
  Update option text
  Add reference file to list
  HDFFV-10656 remove moved source
  HDFFV-10656 Add CHECK_VOL support to CMake
 2018-12-21 14:41:29 -06:00
Allen Byrne
7e8923957f HDFFV-10656 Add CHECK_VOL support to CMake 2018-12-20 15:11:27 -06:00
Quincey Koziol
9e8cacaa55 Remove core VFD-specific property list call and regenerate encoded property 
lists.
 2018-12-20 11:52:09 -06:00
Jacob Smith
210ab50725 Fix mistake with H5E_BEGIN_TRY {...} H5E_END_TRY block containing ERROR-raising macros. 
Formatting tweaks.
 2018-12-20 11:12:53 -06:00
Dana Robinson
fe1a5b4279 Added a shell script so we can run the parallel flush test 
on OpenMPI.
 2018-12-20 03:03:16 -08:00
Quincey Koziol
f1d8d889b4 Correct core VFD to run with a 1MB increment instead of a 1 byte increment! 2018-12-19 17:16:45 -06:00
Jacob Smith
38de07aea3 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~jake.smith/hdf5 into dset_ohdr_minimize 2018-12-19 15:14:51 -06:00
Jacob Smith
2b4e540fad Add "compact" storage test to relative header size comparisons. 2018-12-19 14:57:38 -06:00
Quincey Koziol
b61ad0f7b6 Clear driver properties before returning them to application. 
Move write_tracking and page_size properties to be inside the core VFD's
driver properties.
 2018-12-18 22:30:12 -06:00
Jacob Smith
7541ed1fc7 Formatting adjustments. 2018-12-18 15:11:42 -06:00
Dana Robinson
bd096066c3 Merge pull request #1384 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:build_tweaks to develop 
* commit 'fc64bafb143b1d259282913fdbf0ba9f1a0a8069':
  Updates the autotools tests to also emit the VOL connector for each test.
 2018-12-18 14:12:21 -06:00
Jacob Smith
99bc714c4b Move H5Fset_dset_no_attrs_hint VOL operations to native. 
Move minimzied object header tests from separate file to test/ohdr.c
Some formatting changes.
 2018-12-18 13:42:03 -06:00
Jacob Smith
5efc08a06d Merge branch 'develop' into dset_ohdr_minimize 2018-12-18 11:50:58 -06:00
Dana Robinson
bacabb3534 Merge pull request #1364 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:h5i_reference_removal to develop 
* commit 'e21c1cf7c6ee6dba5dd5bfd1a525227ac1304b53':
  Removed H5I_REFERENCE from the library. It has always been unused and has been marked 'deprecated' since 1.10.0. Fixes HDFFV-10252.
 2018-12-17 17:35:59 -06:00
Jordan Henderson
b4fe787bb9 Add test for H5Arename NULL/empty attribute name fix 
Split checking of NULL vs. empty string arguments
 2018-12-17 14:30:54 -06:00
Dana Robinson
fc64bafb14 Updates the autotools tests to also emit the VOL connector 
for each test.
 2018-12-16 12:41:55 -08:00
Jacob Smith
61350bf350 Re-format test/ohdr_mindset.c 
Fix a few transcription errors in other test files.
 2018-12-13 22:11:29 -06:00
Jacob Smith
8e4b34afd0 formatting adjustments 2018-12-13 19:40:33 -06:00
Quincey Koziol
833a4f73fd Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into develop 2018-12-13 17:32:39 -06:00
Quincey Koziol
247a6afb7e Fix plugin code from referencing invalid key ID value, and also switch from 
strtok() to strtok_r() to avoid possible interference with / to application
use of strtok().
 2018-12-13 17:31:00 -06:00
Jacob Smith
0a4834c264 Reformat to be more consistent with existing code. 
Fix a few typos.
 2018-12-13 14:02:29 -06:00
Jacob Smith
943b7f9c02 Merge branch 'develop' into dset_ohdr_minimize 2018-12-13 10:27:27 -06:00
Jordan Henderson
76c0d8c434 Add test for H5Aget_info(_by_name/_by_idx) NULL info pointer 2018-12-12 18:30:34 -06:00
Jacob Smith
ad6de59e4c Merge branch 'develop' into dset_ohdr_minimize 2018-12-12 17:34:13 -06:00
Jacob Smith
911b8e8fc2 Merge branch 'dset_ohdr_minimize' of https://bitbucket.hdfgroup.org/scm/~jake.smith/hdf5 into dset_ohdr_minimize 
Incorporate a few housekeeping changes and one fix.
 2018-12-12 17:27:27 -06:00
Jacob Smith
ea73325250 Merge branch 'develop' into dset_ohdr_minimize 2018-12-12 17:26:08 -06:00
Jacob Smith
c81e310214 Fix typo. 
Fix CHECK of wrong ID (dset[2|3]_id).
 2018-12-12 14:03:56 -06:00
hdftest
afdf3094cc Merge pull request #1367 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop 
* commit 'deb7d2fb9714acc8222815328f71b0aae7e74275':
  Use version 2 functions in test file to address compile errors for --with-default-api-version=v16 option.
 2018-12-12 11:30:05 -06:00
Larry Knox
deb7d2fb97 Use version 2 functions in test file to address compile errors for 
--with-default-api-version=v16 option.
 2018-12-12 06:53:26 -06:00
Jacob Smith
496de6922f change test file name and apply 'h5_fixname' to it 2018-12-11 17:45:12 -06:00
Dana Robinson
e21c1cf7c6 Removed H5I_REFERENCE from the library. It has always been unused 
and has been marked 'deprecated' since 1.10.0. Fixes HDFFV-10252.
 2018-12-08 08:14:05 -08:00
Allen Byrne
ce625a617e Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop) 
* commit '4643860aa940fb52da251f7023ec2e48d7d10f34':
  HDFFV-10635: Some minor changes to the test case and the comments in the library.
  HDFFV-10635: add a test case.
  HDFFV-10635: Allowing to write the same variable-length element more than once.
 2018-12-07 15:57:56 -06:00
Ray Lu
4643860aa9 Merge pull request #1348 in HDFFV/hdf5 from ~SONGYULU/hdf5_ray:bugfix/HDFFV-10635-hdf5-library-segmentation-fault to develop 
* commit '3e8599591504c95d8a97100b9546174f6132dc97':
  HDFFV-10635: Some minor changes to the test case and the comments in the library.
  HDFFV-10635: add a test case.
  HDFFV-10635: Allowing to write the same variable-length element more than once.
 2018-12-07 14:58:43 -06:00
Songyu Lu
3e85995915 HDFFV-10635: Some minor changes to the test case and the comments in the library. 2018-12-06 17:36:34 -06:00
Allen Byrne
2998dbfc70 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop) 
* commit 'f2da47f732ded55837f6d008af46d0c448bec1f1':
  Update to new callbacks in H5VL_class_t.
 2018-12-06 08:14:34 -06:00