Commit Graph

20587 Commits

Author SHA1 Message Date
Allen Byrne
574cb4e942 The version string has a second use for packaging 2020-08-26 09:04:20 -05:00
Quincey Koziol
27ed99e9f3 Merge pull request #2825 in HDFFV/hdf5 from hdf5_1_12_namespace_cleanup to hdf5_1_12
* commit '1077a767ff3885dd23bdbfdfba51037c925ce23c':
  Minor fixes to align w/state of 1.12 code
  Correct typos w/HGOTO_DONE & HGOTO_ERROR
  Move H5T_vlen_reclaim to package scope
  Switch H5VM inline routines back to single underscope and put a comment in their header about this naming
  Clean up private / package / static namespace issues (function naming, which header file, FUNC_ENTER / LEAVE, etc).  Removed remaining personal email addresses from library source code (still needs cleaned from other directories). Misc. warning, style, and whitespace cleanup.
2020-08-25 17:47:32 -05:00
Allen Byrne
5e91d56e9c Merge pull request #2838 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_12 to hdf5_1_12
* commit 'd2f58a6468be9d5e10d10d439ae905f7825e74e7':
  Add back function for VERIFY_EXTERNAL_CONSOLIDATION
2020-08-25 11:40:37 -05:00
Allen Byrne
d2f58a6468 Add back function for VERIFY_EXTERNAL_CONSOLIDATION 2020-08-25 11:19:28 -05:00
Allen Byrne
d1e1bee509 Merge pull request #2827 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_12 to hdf5_1_12
* commit 'e31653cf5f547d4d8baff7be40f3b1b69b1765c5':
  Revert H5_VERS_SUBRELEASE check
  Add special case when H5_VERS_SUBRELEASE is 0
  Condition if (H5_VERS_SUBRELEASE) is incorrectly false when H5_VERS_SUBRELEASE is 0, a valid value for H5_VERS_SUBRELEASE. Updated to if (${H5_VERS_SUBRELEASE} STREQUAL "") with corresponding reversal of action statements to avoid NOT.
  Add hypen to subrelease regex
  Add ifdef blocks to S3/HDFS test
2020-08-24 08:08:25 -05:00
Allen Byrne
e31653cf5f Revert H5_VERS_SUBRELEASE check 2020-08-24 08:02:04 -05:00
Allen Byrne
06837394c3 Add special case when H5_VERS_SUBRELEASE is 0 2020-08-24 06:56:13 -05:00
Larry Knox
302138fc68 Condition if (H5_VERS_SUBRELEASE) is incorrectly false when
H5_VERS_SUBRELEASE is 0, a valid value for H5_VERS_SUBRELEASE.
Updated to if (${H5_VERS_SUBRELEASE} STREQUAL "") with corresponding
reversal of action statements to avoid NOT.
2020-08-24 00:40:24 -05:00
Allen Byrne
c409c11329 Add hypen to subrelease regex 2020-08-23 14:58:20 -05:00
Allen Byrne
822d890114 Add ifdef blocks to S3/HDFS test 2020-08-23 14:22:18 -05:00
Quincey Koziol
1077a767ff Minor fixes to align w/state of 1.12 code 2020-08-22 14:43:46 -05:00
Quincey Koziol
41ccf61526 Correct typos w/HGOTO_DONE & HGOTO_ERROR 2020-08-22 14:01:59 -05:00
Quincey Koziol
1b0c423ba0 Move H5T_vlen_reclaim to package scope 2020-08-22 14:01:48 -05:00
Quincey Koziol
a90258b04b Switch H5VM inline routines back to single underscope and put a comment in their header about this naming 2020-08-22 14:01:17 -05:00
Quincey Koziol
ba087ce2b5 Clean up private / package / static namespace issues (function naming, which
header file, FUNC_ENTER / LEAVE, etc).  Removed remaining personal email
addresses from library source code (still needs cleaned from other directories).
Misc. warning, style, and whitespace cleanup.
2020-08-22 14:00:44 -05:00
Quincey Koziol
2ab6012bc4 Merge pull request #2822 in HDFFV/hdf5 from hdf5_1_12_coll_chunk_fill_fix to hdf5_1_12
* commit '3e4f255c5031f14a68d387df0762f7a2210df5a3':
  Added release note for MPI type fix
  Simplify default use of MPI_BYTE
  Don't free builtin MPI_BYTE MPI type
  Simplify code to avoid using a boolean to free MPI types
  Avoid creating MPI datatypes on ranks with 0 chunks to write'
2020-08-22 08:18:02 -05:00
Quincey Koziol
3e4f255c50 Added release note for MPI type fix 2020-08-21 16:28:19 -05:00
Quincey Koziol
3c5512eac4 Simplify default use of MPI_BYTE 2020-08-21 16:18:51 -05:00
Quincey Koziol
5a23ba8b59 Don't free builtin MPI_BYTE MPI type 2020-08-21 16:18:40 -05:00
Quincey Koziol
be11bcf2ae Simplify code to avoid using a boolean to free MPI types 2020-08-21 16:18:30 -05:00
Quincey Koziol
e3fb9cdfb6 Avoid creating MPI datatypes on ranks with 0 chunks to write' 2020-08-21 16:18:17 -05:00
Larry Knox
bebf0a9fd6 Merge pull request #2817 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_12 to hdf5_1_12
* commit '3cea63d8e52635c43a3b86602f71e5cd37d7149c':
  Revert "Merge pull request #2815 in HDFFV/hdf5 from hdf5_1_12_small_chunk_io_opt to hdf5_1_12"
2020-08-20 11:07:10 -05:00
Larry Knox
3cea63d8e5 Revert "Merge pull request #2815 in HDFFV/hdf5 from hdf5_1_12_small_chunk_io_opt to hdf5_1_12"
This reverts commit 331cf8c38a, reversing
changes made to ed0985ff7f.
2020-08-20 11:03:40 -05:00
Quincey Koziol
331cf8c38a Merge pull request #2815 in HDFFV/hdf5 from hdf5_1_12_small_chunk_io_opt to hdf5_1_12
* commit 'c32d274e83661dc202ead5efe7458028ea5ef3fb':
  Only initialize the contiguous or compact I/O info struct when needed.
2020-08-20 07:32:22 -05:00
Quincey Koziol
c32d274e83 Only initialize the contiguous or compact I/O info struct when needed. 2020-08-19 16:57:16 -05:00
Dana Robinson
ed0985ff7f Merge pull request #2805 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:tools_normalization_1_12 to hdf5_1_12
* commit '9c255bc995a9cc2b7b328507a759cc059427c839':
  Normalization of tools with develop
2020-08-18 22:01:41 -05:00
Dana Robinson
9c255bc995 Normalization of tools with develop 2020-08-18 10:22:19 -07:00
Larry Knox
c523490147 Merge pull request #2791 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_12 to hdf5_1_12
* commit 'd9c03258ac076b1798b0ed856e68cceb198f0366':
  Fix MANIFEST.
2020-08-17 12:31:48 -05:00
Larry Knox
d9c03258ac Fix MANIFEST. 2020-08-17 12:27:03 -05:00
Larry Knox
dcbe8fe63a Merge pull request #2787 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_12 to hdf5_1_12
* commit '62e054435fb49a0a735fa429ffe10134b43db849':
  1. HDFFV-10830 part 2, move AC_CHECK_HEADERS([szlib.h] after         AC_CHECK_LIB([sz], [SZ_BufftoBuffCompress] to avoid compiling             H5Z.c with szlib.h after its path is removed from AM_CPPFLAGS. 2. Remove unnecessary links to ${HDF5_TOOLS_LIB_TARGET} in utils/mirror_vfd/CMakeLists.txt that prevent building HDF5 with tools disabled.
2020-08-17 10:43:13 -05:00
Larry Knox
62e054435f 1. HDFFV-10830 part 2, move AC_CHECK_HEADERS([szlib.h] after
AC_CHECK_LIB([sz], [SZ_BufftoBuffCompress] to avoid compiling
            H5Z.c with szlib.h after its path is removed from AM_CPPFLAGS.
2. Remove unnecessary links to ${HDF5_TOOLS_LIB_TARGET} in
utils/mirror_vfd/CMakeLists.txt that prevent building HDF5 with tools
disabled.
2020-08-17 07:15:52 -05:00
Allen Byrne
e4e823f02a Merge pull request #2774 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_12 to hdf5_1_12
* commit 'e0d59f92bbd5014a9f141da18937fd5b2fc1d8c0':
  Tag TRILABS-227 changes and fix MANIFEST
  HDFFV-9984 Add test files
  HDFFV-9989 Merge h5repack merge/prune from develop
2020-08-16 10:19:28 -05:00
Allen Byrne
e0d59f92bb Tag TRILABS-227 changes and fix MANIFEST 2020-08-15 18:16:30 -05:00
Allen Byrne
2926483de8 HDFFV-9984 Add test files 2020-08-15 12:01:41 -05:00
Allen Byrne
cc74ba6309 HDFFV-9989 Merge h5repack merge/prune from develop 2020-08-15 11:57:12 -05:00
Dana Robinson
9ed7f24ed4 Merge pull request #2767 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:hdf5_1_12_sync to hdf5_1_12
* commit '30678596f2bf9605ec510dc91adb87d1ac5a71b3':
  Windows thread-safe fixes from develop
2020-08-14 10:54:24 -05:00
Dana Robinson
30678596f2 Windows thread-safe fixes from develop 2020-08-14 08:42:39 -07:00
Allen Byrne
7861784214 Merge pull request #2757 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_12 to hdf5_1_12
* commit 'fbe2fc45893cb06f66dd93869a5a12ecf6d02f4d':
  spelling
  HDFFV-11127 - force RTLD_LOCAL in dlopen
2020-08-13 06:26:16 -05:00
Allen Byrne
fbe2fc4589 spelling 2020-08-13 06:24:04 -05:00
Allen Byrne
f57011b7af HDFFV-11127 - force RTLD_LOCAL in dlopen 2020-08-12 16:18:16 -05:00
Dana Robinson
9952cd37fa Merge pull request #2751 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:hdf5_1_12_sync to hdf5_1_12
* commit 'ba4c9495c276ace7ab1716b0e13d320e63adc33d':
  Added RELEASE.txt note for HDFFV-11027
2020-08-11 13:47:34 -05:00
Dana Robinson
ba4c9495c2 Added RELEASE.txt note for HDFFV-11027 2020-08-11 11:37:16 -07:00
Dana Robinson
170b6653a8 Merge pull request #2726 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:hdf5_1_12_sync to hdf5_1_12
* commit '84b01a39a1c0e20bebfa87d52a6011731fc6f251':
  Fixes minor typos in H5S comments
  Sync with develop
2020-08-05 16:40:52 -05:00
Dana Robinson
84b01a39a1 Fixes minor typos in H5S comments 2020-08-05 12:42:54 -07:00
Dana Robinson
1ae6daaa80 Sync with develop 2020-08-01 09:18:18 -07:00
Vailin Choi
0a64f3e810 Merge pull request #2706 in HDFFV/hdf5 from ~VCHOI/my_third_fork:bugfix/112_HDFFV-11080-heap-use-after-free-by-the-call to hdf5_1_12
* commit '02d8c7256e452ff9dc309cbaa8b7bb284c8d6f1e':
  Merge pull request #2693 in HDFFV/hdf5 from ~VCHOI/my_third_fork:bugfix/HDFFV-11080-heap-use-after-free-by-the-call to develop
2020-07-23 17:22:01 -05:00
Vailin Choi
02d8c7256e Merge pull request #2693 in HDFFV/hdf5 from ~VCHOI/my_third_fork:bugfix/HDFFV-11080-heap-use-after-free-by-the-call to develop
* commit '3023b34272cc6ada84aebfa7441a6a55afa3621c':
  Update MANIFEST. Add new test to Cmake.
  Fix for jira issue HDFFV-11080: (1) Patch up the file pointer when reading attribute of variable length datatype (2) Test to verify the fix when doing multiple threads
2020-07-21 12:40:44 -05:00
Larry Knox
ba4933f6d8 Merge pull request #2701 in HDFFV/hdf5 from ~HDFTEST/hdf5_hft:hdf5_1_12 to hdf5_1_12
* commit 'e5b104245022e59669c283e46470b5571db7bdad':
  Snapshot version 1.12.1-1 Update version to 1.12.1-2
2020-07-19 19:07:49 -05:00
hdftest
e5b1042450 Snapshot version 1.12.1-1
Update version to 1.12.1-2
2020-07-18 23:19:33 -05:00
Allen Byrne
4f439ff231 Merge pull request #2696 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_12 to hdf5_1_12
* commit '271208dceb7f0f81d8a2db27475ebb63a26a3562':
  CMake updates:
2020-07-15 11:01:38 -05:00