Commit Graph

3548 Commits

Author SHA1 Message Date
Songyu Lu
cd9e9a1b5a Minor fix: marking an internal function of the test for export. 2019-04-18 14:23:24 -05:00
Vailin Choi
11c8c98352 Merge pull request #1654 in HDFFV/hdf5 from ~VCHOI/my_third_fork:bugfix/HDFFV-10579-h5arename-function-fails-when to develop
* commit '53a5c3be903ce7c24d02a6bd3a8d9b07a3f82404':
  Change the checking to H5I_INVALID_HID in test_attr_dense_rename().
  Fix for HDFFV-10579 H5Arename fails when creation order of attributes is tracked. The attribute needs to be removed from the creation order index v2 B-tree before re-inserting the renamed attribute via H5A__dense_insert().
2019-04-18 13:15:14 -05:00
Allen Byrne
cc5f91d1d2 Fix CMake errors 2019-04-18 11:35:11 -05:00
Ray Lu
bdb11caa53 Merge pull request #1600 in HDFFV/hdf5 from ~SONGYULU/hdf5_ray:HDFFV-10658-performance-drop-from-1-8 to develop
* commit 'b5ef82a1786605ae86502bc82086047720b7d4ca': (21 commits)
  Moving the handling of null prefix into H5_combine_path.
  Changing the prefix of external file and VDS from empty string to null for performance improvement.
  Improving the condition checking of empty string.
  Replacing string operation strdup with assignment for empty string.
  Adding back links_env.out which I accidentally removed in my previous commit.
  Taking out two unnecessary diff output files.
  Taking out unnecessary diff files for output.
  Adding some comments.
  Some coding style changes.
  Adding the standard output files for the external_env.c and vds_env.c tests.
  Small correction for my previous commit.
  Forgot to add external_common.c and external_common.h.
  Updated CMake for the splitting of external.c and vds.c.
  Minor fix: removal of unnecessary enum values.
  Minor fixes: updating the test vds_env.c according to the set up of vds.c.
  Left out this file in previous commit.
  HDFFV-10658 - setting and getting properties in API context: 1. switched to use the existing H5F_prefix_open_t for enum type; 2. put the common private function used by external.c and external_env.c into external_common.c
  This commit basically has the following changes: 1. restored the datatype, dataspace, and LCPL of the dataset for VOL connector back to the properties. 2. splitted external.c and vds.c because they called HDsetenv in the program, instead using shell scripts to set the environment variables. 3. changed H5CX_get_vds_prefix and H5CX_get_ext_file_prefix to use H5P_peek instead of H5P_get.
  HDFFV-10658: I left out this file in my previous commit.
  HDFFV-10658: 1. moving HDgetenv to dataset initialization stage to reduce the overhead; 2. restoring the retrieval of three vol properties to H5P_get instead of using API context to prepare for Quincey's upcoming refactoring work.
  ...
2019-04-18 10:25:18 -05:00
Vailin Choi
53a5c3be90 Change the checking to H5I_INVALID_HID in test_attr_dense_rename(). 2019-04-16 11:47:13 -05:00
Allen Byrne
68bddef35d HDFFV-10741 - remove SKIP_ERRSTK_TESTS option 2019-04-15 14:46:23 -05:00
Dana Robinson
5d3d1da927 Merge pull request #1652 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:check_passthrough_vol to develop
* commit '9ee3d472113fc3e66ef34e40a0990ed07a2824bc':
  Renamed the HDF5_TEST_VOL option to HDF5_TEST_PASSTHROUGH_VOL.
  Renamed the autotools check-vol target to check-passthrough-vol.
2019-04-15 13:43:16 -05:00
Songyu Lu
6fdf7008c1 Adding back links_env.out which I accidentally removed in my previous commit. 2019-04-15 09:39:57 -05:00
Songyu Lu
bd137d2c59 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~songyulu/hdf5_ray into HDFFV-10658-performance-drop-from-1-8 2019-04-15 09:28:12 -05:00
Vailin Choi
4e05249f98 Fix for HDFFV-10579 H5Arename fails when creation order of attributes is tracked.
The attribute needs to be removed from the creation order index v2 B-tree before
re-inserting the renamed attribute via H5A__dense_insert().
2019-04-12 14:51:37 -05:00
Quincey Koziol
2eac0fccbc Add H5Fget_fileno() API routine. 2019-04-11 22:22:21 -05:00
Songyu Lu
02cc5ba678 Merge branch 'HDFFV-10658-performance-drop-from-1-8' of https://bitbucket.hdfgroup.org/scm/~songyulu/hdf5_ray into HDFFV-10658-performance-drop-from-1-8 2019-04-11 17:32:00 -05:00
songyulu
0243449188 Taking out two unnecessary diff output files. 2019-04-11 17:23:04 -05:00
Songyu Lu
d6ada6ff1f Taking out unnecessary diff files for output. 2019-04-11 16:50:06 -05:00
Songyu Lu
1d1e96f1dd Some coding style changes. 2019-04-11 15:51:21 -05:00
Dana Robinson
9ee3d47211 Renamed the HDF5_TEST_VOL option to HDF5_TEST_PASSTHROUGH_VOL. 2019-04-11 11:27:12 -07:00
Songyu Lu
c3c3c1e142 Adding the standard output files for the external_env.c and vds_env.c tests. 2019-04-11 12:59:07 -05:00
Songyu Lu
a58c01aac1 Small correction for my previous commit. 2019-04-11 10:19:45 -05:00
Songyu Lu
c0e05f0747 Forgot to add external_common.c and external_common.h. 2019-04-10 16:48:42 -05:00
Songyu Lu
417cd9da87 Updated CMake for the splitting of external.c and vds.c. 2019-04-10 16:02:28 -05:00
Songyu Lu
06002f8c22 Minor fixes: updating the test vds_env.c according to the set up of vds.c. 2019-04-10 10:21:38 -05:00
Songyu Lu
c0b13e078e Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~songyulu/hdf5_ray into HDFFV-10658-performance-drop-from-1-8 2019-04-09 18:11:06 -05:00
Songyu Lu
04d07d967a Left out this file in previous commit. 2019-04-09 17:40:24 -05:00
Songyu Lu
477dda3c0d HDFFV-10658 - setting and getting properties in API context:
1. switched to use the existing H5F_prefix_open_t for enum type;
2. put the common private function used by external.c and external_env.c into external_common.c
2019-04-09 16:20:19 -05:00
Vailin Choi
3ccc98e256 Modifications based on PR feedback:
(1) Add H5Sdeprec.c to src/CMakeLists.txt
(2) Add test for H5Sencode1.
2019-04-08 12:33:45 -05:00
Songyu Lu
d8ff8da46c Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~songyulu/hdf5_ray into HDFFV-10658-performance-drop-from-1-8 2019-04-08 11:17:59 -05:00
Vailin Choi
2886cd9e45 HDFFV-10365: Changes as described in the RFC: H5Sencode/H5Sdecode Format Change.
This also addresses HDFFV-10255: H5Sencode/decode performance issue.
2019-04-06 16:55:14 -05:00
Quincey Koziol
92f30fd3d9 Merge remote-tracking branch 'origin/develop' into merge_hyperslab_update_01 2019-04-06 16:20:55 -05:00
Vailin Choi
7fe665ebff Fix for HDFFV-10271 hyperslab encoding incorrect length. 2019-04-05 11:34:58 -05:00
Quincey Koziol
ef7f3ef177 Merge remote-tracking branch 'origin/develop' into merge_hyperslab_update_01 2019-04-05 10:35:38 -05:00
Quincey Koziol
dde0a1c93a Merge remote-tracking branch 'origin/develop' into merge_hyperslab_update_01 2019-04-04 16:45:34 -05:00
Vailin Choi
0073f19897 Set V112 as the latest format and extend the arrays of version bounds. 2019-04-04 16:29:37 -05:00
Songyu Lu
5e7cccb5a2 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~songyulu/hdf5_ray into HDFFV-10658-performance-drop-from-1-8 2019-04-04 13:16:27 -05:00
Songyu Lu
50d9a397ab This commit basically has the following changes:
1. restored the datatype, dataspace, and LCPL of the dataset for VOL connector back to the properties.
2. splitted external.c and vds.c because they called HDsetenv in the program, instead using shell scripts to set the environment variables.
3. changed H5CX_get_vds_prefix and H5CX_get_ext_file_prefix to use H5P_peek instead of H5P_get.
2019-04-04 11:03:05 -05:00
Quincey Koziol
fc945999d0 Merge remote-tracking branch 'origin/develop' into env_vol_load 2019-04-03 17:27:10 -05:00
Binh-Minh Ribler
d818edb110 Merge pull request #1610 in HDFFV/hdf5 from ~BMRIBLER/hdf5_bmr_fixbug:develop to develop
* commit 'fe104cc38ffbdb39d3e04da107d86ebfc7e8b622':
  Test improvement Description     Moved the new tests to a more appropriate test function. Platforms tested:     Linux/64 (jelly)
  Fixed HDFFV-10210 and HDFFV-10587 Description:     - Added parameter validation (HDFFV-10210)     - Added detection of division by zero (HDFFV-10587 - CVE-2018-17438)     - Fixed typos in various tests Platforms tested:     Linux/64 (jelly)     Linux/64 (platypus)     Darwin (osx1011test)
2019-03-23 21:10:30 -05:00
Quincey Koziol
7dce8523c1 Merge remote-tracking branch 'origin/develop' into merge_hyperslab_update_01 2019-03-23 11:50:48 -05:00
Dana Robinson
85e2214d55 Changes that show the right way to iterate over enums. 2019-03-21 10:18:16 -07:00
Binh-Minh Ribler
fe104cc38f Test improvement
Description
    Moved the new tests to a more appropriate test function.
Platforms tested:
    Linux/64 (jelly)
2019-03-21 11:09:17 -05:00
Dana Robinson
97cdcc47e4 Used the H5_INC_ENUM macro to squash enum value increment warnings. 2019-03-21 01:15:09 -07:00
Quincey Koziol
962fb0ccb8 Merge remote-tracking branch 'origin/develop' into merge_hyperslab_update_01 2019-03-20 17:02:21 -05:00
Binh-Minh Ribler
222346f373 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_bmr_fixbug into develop 2019-03-20 14:07:40 -05:00
Binh-Minh Ribler
7add52ff4f Fixed HDFFV-10210 and HDFFV-10587
Description:
    - Added parameter validation (HDFFV-10210)
    - Added detection of division by zero (HDFFV-10587 - CVE-2018-17438)
    - Fixed typos in various tests
Platforms tested:
    Linux/64 (jelly)
    Linux/64 (platypus)
    Darwin (osx1011test)
2019-03-20 14:03:48 -05:00
Allen Byrne
7a589a0a39 Fix CMake error in name 2019-03-19 14:47:08 -05:00
Quincey Koziol
cda6273737 Merge remote-tracking branch 'origin/develop' into merge_hyperslab_update_01 2019-03-16 23:01:18 -05:00
Quincey Koziol
9d86314f8b Core changes to selection code from the hyperslab_updates branch. 2019-03-15 20:14:41 -05:00
Neil Fortner
c812a6c9ec Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into develop 2019-03-15 10:20:25 -05:00
Jerome Soumagne
dc69df49e6 CMake: fix pthread linking to only be private 2019-03-13 13:54:35 -05:00
Quincey Koziol
deeb302747 Specify the default VOL connector to use with an environment variable.
This implicitly adds support for changing the VOL connector for command-line
tools or any application linked with the library.

Also, add 'make check-vol' support for all directories, clearing up necessary
issues in testing scripts, etc.
2019-03-09 21:41:38 -06:00
Neil Fortner
faec33960f Fix issue with direct chunk write not updating the "last chunk" index
cache.  Fix issues involving datasets being "no allocated" when they
contain cached raw data.
2019-03-06 16:57:42 -06:00