philipp/hdf5
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity
20,587 Commits 73 Branches 125 Tags
574cb4e9425ba1ce8bf0a777caa6cf4e9d57ca4e
Commit Graph

6681 Commits

Author SHA1 Message Date
Quincey Koziol
92f30fd3d9 Merge remote-tracking branch 'origin/develop' into merge_hyperslab_update_01 2019-04-06 16:20:55 -05:00
Vailin Choi
f38fa53fee Merge pull request #1644 in HDFFV/hdf5 from ~VCHOI/my_third_fork:bugfix/HDFFV-10271-version-2-hyperslab-encoding to develop 
* commit '7fe665ebff3e86aaf1eef92199f757a5c0d1fe80':
  Fix for HDFFV-10271 hyperslab encoding incorrect length.
 2019-04-05 22:18:00 -05:00
Vailin Choi
227b7131d1 Merge pull request #1642 in HDFFV/hdf5 from ~VCHOI/my_third_fork:bugfix/separate_selection_specific to develop 
* commit '4142d8b7d4ac48cffcc2b92af4a54352b329865b':
  Move dataspace selection-specific coding to the callbacks as preparation for the H5Sencode changes.
 2019-04-05 22:08:24 -05:00
Vailin Choi
7fe665ebff Fix for HDFFV-10271 hyperslab encoding incorrect length. 2019-04-05 11:34:58 -05:00
Quincey Koziol
ef7f3ef177 Merge remote-tracking branch 'origin/develop' into merge_hyperslab_update_01 2019-04-05 10:35:38 -05:00
Vailin Choi
9e934e75fa Merge pull request #1639 in HDFFV/hdf5 from ~VCHOI/my_third_fork:bugfix/add_v112_version_bounds to develop 
* commit '0073f198978dea0116bd74816b3119dfeb09144b':
  Set V112 as the latest format and extend the arrays of version bounds.
 2019-04-05 10:23:05 -05:00
Vailin Choi
4142d8b7d4 Move dataspace selection-specific coding to the callbacks as preparation for the H5Sencode changes. 2019-04-04 23:31:01 -05:00
Vailin Choi
c50c2696e8 Setting API context for fapl and libver_bounnds in preparation for the H5Sencode changes. 2019-04-04 17:25:28 -05:00
Quincey Koziol
dde0a1c93a Merge remote-tracking branch 'origin/develop' into merge_hyperslab_update_01 2019-04-04 16:45:34 -05:00
Vailin Choi
0073f19897 Set V112 as the latest format and extend the arrays of version bounds. 2019-04-04 16:29:37 -05:00
Songyu Lu
5e7cccb5a2 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~songyulu/hdf5_ray into HDFFV-10658-performance-drop-from-1-8 2019-04-04 13:16:27 -05:00
Songyu Lu
50d9a397ab This commit basically has the following changes: 
1. restored the datatype, dataspace, and LCPL of the dataset for VOL connector back to the properties.
2. splitted external.c and vds.c because they called HDsetenv in the program, instead using shell scripts to set the environment variables.
3. changed H5CX_get_vds_prefix and H5CX_get_ext_file_prefix to use H5P_peek instead of H5P_get.
 2019-04-04 11:03:05 -05:00
Quincey Koziol
fc945999d0 Merge remote-tracking branch 'origin/develop' into env_vol_load 2019-04-03 17:27:10 -05:00
hdftest
7a0ac416c9 Snapshot version 1.11 release 4. 
Update version to 1.11.5.
 2019-04-01 16:11:28 -05:00
Songyu Lu
e09e2fc4ad HDFFV-10658: I left out this file in my previous commit. 2019-03-22 10:03:06 -05:00
Songyu Lu
9622aac313 HDFFV-10658: 1. moving HDgetenv to dataset initialization stage to reduce the overhead; 2. restoring the retrieval of three vol properties to H5P_get instead of using API context to prepare for Quincey's upcoming refactoring work. 2019-03-22 09:53:15 -05:00
Quincey Koziol
4f8a844a00 Clean up if-else chain. 2019-03-20 17:13:48 -05:00
Binh-Minh Ribler
222346f373 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_bmr_fixbug into develop 2019-03-20 14:07:40 -05:00
Binh-Minh Ribler
7add52ff4f Fixed HDFFV-10210 and HDFFV-10587 
Description:
    - Added parameter validation (HDFFV-10210)
    - Added detection of division by zero (HDFFV-10587 - CVE-2018-17438)
    - Fixed typos in various tests
Platforms tested:
    Linux/64 (jelly)
    Linux/64 (platypus)
    Darwin (osx1011test)
 2019-03-20 14:03:48 -05:00
Quincey Koziol
adb0928827 Remove thread-local copy of hyperslab operation generation value. 2019-03-19 16:40:07 -05:00
Quincey Koziol
93b72d60ab Merge remote-tracking branch 'origin/develop' into merge_hyperslab_update_01 2019-03-19 16:20:54 -05:00
Dana Robinson
2e867d2a6d Commented out memcpy overlap check while we investigate 
parallel filters issues.
 2019-03-18 19:06:58 -07:00
Dana Robinson
2db272521e Yanked check for memcpy n > 0 2019-03-17 16:01:31 -07:00
Quincey Koziol
cda6273737 Merge remote-tracking branch 'origin/develop' into merge_hyperslab_update_01 2019-03-16 23:01:18 -05:00
Dana Robinson
5c80d3d912 - Added H5MMprivate.h #includes where needed 
- Added casts to quiet H5MM_memcpy warnings
- Removed char * casts from HDmemcpy
 2019-03-16 16:02:06 -07:00
Dana Robinson
a98747c0f9 Added an H5MM_memcpy call that checks for buffer overlap. 2019-03-16 08:06:52 -07:00
Quincey Koziol
9d86314f8b Core changes to selection code from the hyperslab_updates branch. 2019-03-15 20:14:41 -05:00
Dana Robinson
d2591ce377 Merge pull request #1602 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:wopen_squash to develop 
* commit '0c20c65e2f3abf390ad87c9167daca4cdff2de39':
  Added the HDopen work-around on windows to pio_engine.c
  Adds _wopen support on Windows so that files with UTF-8 names can be opened.
 2019-03-15 10:47:02 -05:00
Neil Fortner
c812a6c9ec Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into develop 2019-03-15 10:20:25 -05:00
Dana Robinson
750b5c2930 Adds _wopen support on Windows so that files with UTF-8 names 
can be opened.

Fixes: HDFFV-2714, HDFFV-3914, HDFFV-3895, HDFFV-8237, HDFFV-10413, HDFFV-10691
 2019-03-15 00:41:39 -07:00
Jerome Soumagne
0ea7aa89ff Merge pull request #1601 in HDFFV/hdf5 from ~JSOUMAGNE/hdf5:topic_thread_private to develop 
* commit 'dc69df49e6a8896606c9e4bd0987613a02f7a25a':
  CMake: fix pthread linking to only be private
 2019-03-13 15:25:23 -05:00
Jerome Soumagne
dc69df49e6 CMake: fix pthread linking to only be private 2019-03-13 13:54:35 -05:00
Songyu Lu
594cd93543 HDFFV-10658: setting and getting properties in API context: 
1. external file prefix and VDS prefix.
2. the datatype, dataspace, and LCPL of the dataset for VOL connector.
 2019-03-13 10:20:30 -05:00
Quincey Koziol
e6b8ebe954 Merge remote-tracking branch 'origin/develop' into env_vol_load 2019-03-12 11:49:03 -05:00
Quincey Koziol
8659857364 Add API routines to retrieve, restore, reset, and free library state. 
(Primarily for use in the async VOL connector, which has to schedule API
operations for future execution and then restore the state of the library when
the operation actually executes)
 2019-03-11 17:29:14 -05:00
Quincey Koziol
deeb302747 Specify the default VOL connector to use with an environment variable. 
This implicitly adds support for changing the VOL connector for command-line
tools or any application linked with the library.

Also, add 'make check-vol' support for all directories, clearing up necessary
issues in testing scripts, etc.
 2019-03-09 21:41:38 -06:00
M. Scot Breitenfeld
07fde1e25c Merge branch 'develop' into H10621 2019-03-07 14:47:38 -06:00
Neil Fortner
faec33960f Fix issue with direct chunk write not updating the "last chunk" index 
cache.  Fix issues involving datasets being "no allocated" when they
contain cached raw data.
 2019-03-06 16:57:42 -06:00
Quincey Koziol
33db9f5644 Fix typo. 2019-03-05 17:33:13 -06:00
Quincey Koziol
b8468e6fdb Move 'minimize dataset object header flag' into API context 2019-03-05 10:36:28 -06:00
Songyu Lu
b23079de3a HDFFV-10705: Fixed memory leak in scale offset filter. 2019-02-28 14:36:38 -06:00
Quincey Koziol
d6663b95ac Revise "management" VOL callbacks into 'info' and object 'wrap / retrieval' 
classes.
 2019-02-23 17:02:29 -06:00
Jerome Soumagne
342cad2a3d Merge pull request #1569 in HDFFV/hdf5 from ~JSOUMAGNE/hdf5:topic_threadsafe to develop 
* commit 'bcf5c400c06bf06820b25c37eceaa97245f15f1f':
  Fix CMake H5_HAVE_THREADSAFE to set value in H5pubconf.h
 2019-02-21 18:18:39 -06:00
Jerome Soumagne
bcf5c400c0 Fix CMake H5_HAVE_THREADSAFE to set value in H5pubconf.h 
Add REQUIRED to find_package(Threads)

Link against thread library if static and not WIN32 platform
 2019-02-21 16:39:37 -06:00
Dana Robinson
32ea4e72f1 Merge branch 'develop' into c_stdlib_posix_call_cleanup 2019-02-19 14:49:20 -08:00
Quincey Koziol
e1046db0e6 Merge pull request #1548 in HDFFV/hdf5 from merge_hyperslab_updates_04 to develop 
* commit '320eaf91b9adb36bb0fed9264d460e4a808200b7':
  More changes to align with incoming selection improvements.
 2019-02-15 14:12:16 -06:00
Quincey Koziol
320eaf91b9 More changes to align with incoming selection improvements. 2019-02-14 16:20:32 -06:00
Allen Byrne
b5a4f470cd Use STREQUAL 2019-02-14 15:28:02 -06:00
Allen Byrne
2268685c08 CMake if statement correction 2019-02-14 11:20:17 -06:00
Quincey Koziol
10cdff5ca4 Merge pull request #1540 in HDFFV/hdf5 from merge_hyperslab_changes_01 to develop 
* commit 'fb5d1a37c11bca613175a48262a2147e99c9dede':
  Align develop with incoming hyperslab_updates branch changes.
 2019-02-13 18:13:18 -06:00