Commit Graph

6681 Commits

Author SHA1 Message Date
Dana Robinson
b31a53bfcb Merge pull request #1719 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:vipl to develop
* commit 'a18727bc77c90a9925cabbde8d8ec46c757c6254':
  Added a VOL initialization property list type.
2019-06-05 15:04:06 -05:00
Dana Robinson
a18727bc77 Added a VOL initialization property list type. 2019-06-05 04:34:36 -07:00
Dana Robinson
9557087c0e Minor warning fixes:
* Fixed an error return value in H5Aint.c (NULL --> FAIL)
* Added H5VL_FILE_GET_FILENO to H5trace.c
2019-06-05 04:32:08 -07:00
Neil Fortner
66699f2c7d Merge pull request #1717 in HDFFV/hdf5 from ~NFORTNE2/hdf5_naf:develop to develop
Complete rework of H5S__hyper_project_intersection. Addresses VDS performance issues raised in HDFFV-10693.

* commit 'd3e242eba1ba98726ed64b14e75f6adee724bea7':
  Minor fixes/improvements for VDS performance improvement (HDFFV-10693).
  Refactor H5S__hyper_project_intersection to operate directly on span trees, improving performance and removing the conditionn that the extents be equal.
  Refactor H5S__hyper_project_intersection to operate directly on span trees, improving performance and removing the conditionn that the extents be equal.
2019-06-04 11:06:23 -05:00
Binh-Minh Ribler
c9ae1cf557 Merge pull request #1693 in HDFFV/hdf5 from ~BMRIBLER/hdf5-bmr:develop to develop
* commit '8a57a683391eed79aca80a7325ef152bb76ad0a6':
  Code improvement Description:     Fixed potential division by zero occurrences and changed an assert to     if statement. Platforms tested:     Linux/64 (jelly)     Linux/64 (platypus)     Darwin (osx1011test)
2019-06-03 13:16:02 -05:00
Neil Fortner
45daa3d168 Minor fixes/improvements for VDS performance improvement (HDFFV-10693). 2019-06-03 12:42:22 -05:00
Neil Fortner
35a8a549f6 Refactor H5S__hyper_project_intersection to operate directly on span
trees, improving performance and removing the conditionn that the
extents be equal.
2019-05-31 19:26:56 -05:00
Dana Robinson
0afb76228e Added code that disallows unregistering the native VOL connector. 2019-05-24 13:39:45 -07:00
Dana Robinson
d5a8b2a80c Split VOL connector routines into separate headers:
* H5VLconnector.h for terminal connector things
* H5VLconnector_passthru.h for passthrough connector things

Note that these headers are arranged such that they are included in
hdf5.h so VOL connectors only need to include that. The separation into
multiple headers is mainly for readability.
2019-05-24 02:22:08 -07:00
Jerome Soumagne
e1879a23ae Merge pull request #1706 in HDFFV/hdf5 from ~JSOUMAGNE/hdf5:topic_getloc to develop
* commit '982ed75720d7dece10623868cda22c46908baebe':
  Rename H5VL_ID_GET_NAME to H5VL_OBJECT_GET_NAME
2019-05-23 13:51:56 -05:00
Jerome Soumagne
982ed75720 Rename H5VL_ID_GET_NAME to H5VL_OBJECT_GET_NAME
Implement native H5VL_OBJECT_GET_NAME by addr
2019-05-23 13:48:04 -05:00
Jordan Henderson
802b292725 Assign NULL to func_name/file_name/desc error entry pointers when clearing error stack 2019-05-17 10:49:27 -05:00
Jordan Henderson
04f171d0cb Avoid clearing error stack when calling H5Eget_msg() 2019-05-17 10:48:04 -05:00
Binh-Minh Ribler
8a57a68339 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5-bmr into develop 2019-05-05 00:43:37 -05:00
Binh-Minh Ribler
bdf882ae39 Code improvement
Description:
    Fixed potential division by zero occurrences and changed an assert to
    if statement.
Platforms tested:
    Linux/64 (jelly)
    Linux/64 (platypus)
    Darwin (osx1011test)
2019-05-05 00:41:19 -05:00
hdftest
1cec61a775 Snapshot version 1.11 release 5.
Update version to 1.11.6.
2019-05-02 10:42:53 -05:00
Quincey Koziol
08b009cc4a Merge remote-tracking branch 'origin/develop' into merge_hyperslab_update_01 2019-04-29 17:51:55 -05:00
Quincey Koziol
1a4b236aad Merge pull request #1676 in HDFFV/hdf5 from ~KOZIOL/hdf5:refactor_obj_create_params to develop
* commit '53ffbf4bf89350b5d6b90c11585f39af94209754':
  Cast enum to int, for strict varargs handling.
  Refactor group creation parameters to take them out of the group creation property list and pass them as normal function parameters.
  Warning cleanup
  Refactor link creation parameters from being passing as properties in the link creation property list to vararg function parameters.
  Minor cleanups
  Refactor attribute creation parameters to move parameters out of creation property list and into function parameters.
  A few minor cleanups
  Refactor dataset creation parameters out of the dataset creation property list and pass them as regular function parameters.
2019-04-26 17:45:34 -05:00
Quincey Koziol
53ffbf4bf8 Cast enum to int, for strict varargs handling. 2019-04-25 12:57:23 -05:00
Dana Robinson
568c3624de Improvements to the H5Fis_accessible() and H5Fis_hdf5() tests
in tfile.c.
* General code tidying.
* Expanded tests to work with multi-file VFDs.
2019-04-25 01:07:42 -07:00
Quincey Koziol
6d912bf0b5 Refactor group creation parameters to take them out of the group creation
property list and pass them as normal function parameters.
2019-04-25 01:12:46 -05:00
Quincey Koziol
ff0b56fa38 Warning cleanup 2019-04-25 01:12:28 -05:00
Quincey Koziol
b8bb6aec7e Refactor link creation parameters from being passing as properties in the
link creation property list to vararg function parameters.
2019-04-25 00:53:58 -05:00
Quincey Koziol
07c3a39bf5 Minor cleanups 2019-04-25 00:53:16 -05:00
Quincey Koziol
9fadb39656 Refactor attribute creation parameters to move parameters out of creation
property list and into function parameters.
2019-04-24 23:33:56 -05:00
Quincey Koziol
59635ab747 A few minor cleanups 2019-04-24 23:22:28 -05:00
Quincey Koziol
0ca6b1305f Refactor dataset creation parameters out of the dataset creation property
list and pass them as regular function parameters.
2019-04-24 22:31:36 -05:00
M. Scot Breitenfeld
7dd53873f7 Merge branch 'develop' into H10621 2019-04-24 12:57:30 -05:00
Jordan Henderson
4a4c0bc397 Fix issue with H5Iiterate always stopping with an error after the first iteration 2019-04-23 14:12:58 -05:00
Quincey Koziol
62198c2436 Add an 'unwrap' VOL callback, so that connectors can unwrap an underlying
object without closing it.  (Especially needed for pass-through connectors)
2019-04-21 14:45:54 -05:00
Vailin Choi
11c8c98352 Merge pull request #1654 in HDFFV/hdf5 from ~VCHOI/my_third_fork:bugfix/HDFFV-10579-h5arename-function-fails-when to develop
* commit '53a5c3be903ce7c24d02a6bd3a8d9b07a3f82404':
  Change the checking to H5I_INVALID_HID in test_attr_dense_rename().
  Fix for HDFFV-10579 H5Arename fails when creation order of attributes is tracked. The attribute needs to be removed from the creation order index v2 B-tree before re-inserting the renamed attribute via H5A__dense_insert().
2019-04-18 13:15:14 -05:00
Ray Lu
bdb11caa53 Merge pull request #1600 in HDFFV/hdf5 from ~SONGYULU/hdf5_ray:HDFFV-10658-performance-drop-from-1-8 to develop
* commit 'b5ef82a1786605ae86502bc82086047720b7d4ca': (21 commits)
  Moving the handling of null prefix into H5_combine_path.
  Changing the prefix of external file and VDS from empty string to null for performance improvement.
  Improving the condition checking of empty string.
  Replacing string operation strdup with assignment for empty string.
  Adding back links_env.out which I accidentally removed in my previous commit.
  Taking out two unnecessary diff output files.
  Taking out unnecessary diff files for output.
  Adding some comments.
  Some coding style changes.
  Adding the standard output files for the external_env.c and vds_env.c tests.
  Small correction for my previous commit.
  Forgot to add external_common.c and external_common.h.
  Updated CMake for the splitting of external.c and vds.c.
  Minor fix: removal of unnecessary enum values.
  Minor fixes: updating the test vds_env.c according to the set up of vds.c.
  Left out this file in previous commit.
  HDFFV-10658 - setting and getting properties in API context: 1. switched to use the existing H5F_prefix_open_t for enum type; 2. put the common private function used by external.c and external_env.c into external_common.c
  This commit basically has the following changes: 1. restored the datatype, dataspace, and LCPL of the dataset for VOL connector back to the properties. 2. splitted external.c and vds.c because they called HDsetenv in the program, instead using shell scripts to set the environment variables. 3. changed H5CX_get_vds_prefix and H5CX_get_ext_file_prefix to use H5P_peek instead of H5P_get.
  HDFFV-10658: I left out this file in my previous commit.
  HDFFV-10658: 1. moving HDgetenv to dataset initialization stage to reduce the overhead; 2. restoring the retrieval of three vol properties to H5P_get instead of using API context to prepare for Quincey's upcoming refactoring work.
  ...
2019-04-18 10:25:18 -05:00
Songyu Lu
b5ef82a178 Moving the handling of null prefix into H5_combine_path. 2019-04-17 17:42:01 -05:00
Songyu Lu
fc47e2e07a Changing the prefix of external file and VDS from empty string to null for performance improvement. 2019-04-17 16:53:40 -05:00
Songyu Lu
b90b5be59b Improving the condition checking of empty string. 2019-04-17 12:35:44 -05:00
Songyu Lu
1c6bce2f9b Replacing string operation strdup with assignment for empty string. 2019-04-17 11:16:51 -05:00
Quincey Koziol
659e212e11 Correct set extent operation on VDS to iterate over # of used sub-datasets
instead of # of allocated sub-datasets.
2019-04-16 18:07:29 -05:00
Songyu Lu
bd137d2c59 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~songyulu/hdf5_ray into HDFFV-10658-performance-drop-from-1-8 2019-04-15 09:28:12 -05:00
Quincey Koziol
4918d443bb Add trace macro. 2019-04-12 18:21:35 -05:00
Vailin Choi
4e05249f98 Fix for HDFFV-10579 H5Arename fails when creation order of attributes is tracked.
The attribute needs to be removed from the creation order index v2 B-tree before
re-inserting the renamed attribute via H5A__dense_insert().
2019-04-12 14:51:37 -05:00
Quincey Koziol
2eac0fccbc Add H5Fget_fileno() API routine. 2019-04-11 22:22:21 -05:00
Songyu Lu
6e8bd1280a Adding some comments. 2019-04-11 16:10:54 -05:00
Songyu Lu
bf6479fcee Minor fix: removal of unnecessary enum values. 2019-04-10 11:22:24 -05:00
Songyu Lu
06002f8c22 Minor fixes: updating the test vds_env.c according to the set up of vds.c. 2019-04-10 10:21:38 -05:00
Songyu Lu
c0b13e078e Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~songyulu/hdf5_ray into HDFFV-10658-performance-drop-from-1-8 2019-04-09 18:11:06 -05:00
Songyu Lu
477dda3c0d HDFFV-10658 - setting and getting properties in API context:
1. switched to use the existing H5F_prefix_open_t for enum type;
2. put the common private function used by external.c and external_env.c into external_common.c
2019-04-09 16:20:19 -05:00
Vailin Choi
3ccc98e256 Modifications based on PR feedback:
(1) Add H5Sdeprec.c to src/CMakeLists.txt
(2) Add test for H5Sencode1.
2019-04-08 12:33:45 -05:00
Songyu Lu
d8ff8da46c Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~songyulu/hdf5_ray into HDFFV-10658-performance-drop-from-1-8 2019-04-08 11:17:59 -05:00
Vailin Choi
c57ae99612 Modification for num_elem based on PR feedback. 2019-04-08 11:09:11 -05:00
Vailin Choi
2886cd9e45 HDFFV-10365: Changes as described in the RFC: H5Sencode/H5Sdecode Format Change.
This also addresses HDFFV-10255: H5Sencode/decode performance issue.
2019-04-06 16:55:14 -05:00