Commit Graph

6681 Commits

Author SHA1 Message Date
Richard Warren
157398107e Try to address most of the issues raised by Dana in the code review 2017-10-11 13:40:54 -04:00
Allen Byrne
f92ccce1f9 HDFFV-10297 merge from develop 2017-10-10 14:46:59 -05:00
Allen Byrne
c577a5e995 HDFFV-10297 update calls to H5Zfilter_avail 2017-10-09 17:00:15 -05:00
Richard Warren
837624b9cd Add a test for parallel reads of independent files using MPI subgroups 2017-10-09 16:47:21 -04:00
Allen Byrne
a07d6b52fb HDFFV-10297 - fix repack individual objects
includes H5Zfilter_avail() fix
2017-10-06 14:36:07 -05:00
mainzer
ceab5a5176 Edits to the file open optimization and associated test
code to bring them closer to the HDF5 library's unwritten
coding standards.  Also bug fix to repair a hang in testphdf5.

Tested parallel/debug on Charis and Jelly, parallel/production on Jelly.
2017-10-05 17:25:57 -05:00
Allen Byrne
865b258493 Whitespace conversions and comment updates 2017-10-04 08:53:45 -05:00
Vailin Choi
fe70476a22 Initial checkin for library version bounds
Code changes to provide versioning support when adding to the enumerated defines for H5F_libver_t.
2017-10-03 14:57:36 -05:00
Quincey Koziol
744b6b282f Better segregate clean & dirty LRU lists so that they are only defined when
the H5C_MAINTAIN_CLEAN_AND_DIRTY_LRU_LISTS macro is defined.
2017-09-30 09:50:58 -05:00
Richard Warren
da0f8223df Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into optimize_superblock_read 2017-09-28 16:33:34 -04:00
Richard Warren
81094ac3cf The initial coding for the superblock read optization 2017-09-28 16:27:29 -04:00
Quincey Koziol
8880ec672e Style cleanups and misc. bugfixes discovered during full SWMR development. 2017-09-23 11:17:47 -05:00
Richard Warren
2822d9c9fb Merge candidate for the 1_10 branch 2017-09-20 10:54:47 -04:00
Allen Byrne
5eafce2e04 Restore previous 2017-09-19 11:42:04 -05:00
Allen Byrne
67c91dcd41 Generate headers for 1.10 should default off 2017-09-12 09:22:03 -05:00
Jordan Henderson
17029af344 Revert malloc's back to using hard-coded type for sizeof 2017-09-01 08:58:37 -05:00
Jordan Henderson
ce977db07e Minor comment refactoring 2017-09-01 08:38:17 -05:00
Jordan Henderson
2959faa575 Update documentation 2017-08-31 15:05:13 -05:00
Vailin Choi
c038988663 Fix for daily test failure
Fix for the compilation error from the PGI compiler.
2017-08-30 10:27:36 -05:00
Vailin Choi
b9f294a944 Modifications based on comments from pull request review
(1) Remove unnecessary asserts
(2) Add code to insert bad offset values to the test file in gen_bad_offset.c
2017-08-30 10:27:03 -05:00
Vailin Choi
f6c94f3ba6 Fix for HDFFV-10216 segfault in H5G_node_cmp3 with corrupt h5 file
Fix H5HL_offset_into() to return error when offset exceeds heap data block size.
Also fix other places that call this routine to detect error return.
2017-08-30 10:26:19 -05:00
Jordan Henderson
e04817b5aa Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '593e4038b3ab474a47e468bb3478d4ae3a6820e6':
  Fix for daily test failure Fix for the compilation error from the PGI compiler.
  Modifications based on comments from pull request review (1) Remove unnecessary asserts (2) Add code to insert bad offset values to the test file in gen_bad_offset.c
  HDFFV-10188 force non-native type description
  HDFFV-10188 emu insists on printing non-native description
  Fix for HDFFV-10216 segfault in H5G_node_cmp3 with corrupt h5 file Fix H5HL_offset_into() to return error when offset exceeds heap data block size. Also fix other places that call this routine to detect error return.
  HDFFV-10188 fix typo
  HDFFV-10188 add missing copy commands
  HDFFV-10188 Add tests and files
  HDFFV-10188 enable null space test
  HDFFV-10188 add release note
  HDFFV-10188 - Check for empty string first
  HDFFV-10188 error on NULL dataspace
2017-08-24 14:37:13 -05:00
Vailin Choi
38b4e97692 Fix for daily test failure
Fix for the compilation error from the PGI compiler.
2017-08-24 11:42:35 -05:00
Vailin Choi
1ef8577a4a Modifications based on comments from pull request review
(1) Remove unnecessary asserts
(2) Add code to insert bad offset values to the test file in gen_bad_offset.c
2017-08-23 16:23:09 -05:00
Vailin Choi
b07eb6efd0 Fix for HDFFV-10216 segfault in H5G_node_cmp3 with corrupt h5 file
Fix H5HL_offset_into() to return error when offset exceeds heap data block size.
Also fix other places that call this routine to detect error return.
2017-08-22 01:36:20 -05:00
mainzer
85699e41c2 Updated H5C__flush_single_entry() in H5C.c to correct
duplicate metadata write bug observed in 1.10.1.

Tested parallel/production on jelly
       parallel/debug & parallel/production on charis (in develop branch)
2017-08-15 15:54:34 -05:00
Jordan Henderson
c34ee0b2a5 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into develop 2017-08-11 14:25:33 -05:00
Jordan Henderson
1ce6691a72 Fix bug where incorrect amount of data was being read from the file 2017-08-10 14:12:01 -05:00
hdftest
1015828c1f Snapshot version 1.10 release 2 (snap1) 2017-08-08 23:31:21 -05:00
hdftest
d3b8037137 Snapshot 1.10.2-snap1
(Committed 8/1/2017 but not pushed from fork)
2017-08-04 15:49:04 -05:00
Jordan Henderson
50c4bc8835 Add test file to build process 2017-08-03 10:09:47 -05:00
Vailin Choi
d4e75f6a50 Skip test in test/fheap.c when:
a) multi/split drivers and
b) persisting free-space or using paged aggregation strategy
because the library will fail file creation (temporary) for the above conditions.
2017-08-02 17:04:15 -05:00
Vailin Choi
d7bfd458c4 Changes made based on RFC review comments
Test the changes in a branch via daily testing.
2017-08-02 17:00:13 -05:00
Dana Robinson
81340c609b Moved H5PL diagnostic pragmas to comply with old gcc requirements that they
be outside of functions.
2017-08-02 08:32:31 -07:00
Dana Robinson
9bcf8b2f25 Minor tweaks in response to code review. 2017-08-01 04:59:36 -07:00
Dana Robinson
fd0d8738e0 Merge branch 'develop' into h5pl_commit 2017-08-01 04:12:03 -07:00
Vailin Choi
fc76c77852 Fix for HDFFV-10217 infinite loop in H5VM_power2up().
The function H5VM_power2up() returns the next power of 2 for n.
When n exceeds 2^63, it overflows and becomes 0 causing the infinite looping.
The fix ensures that the function checks for n >= 2^63 and returns 0.
2017-07-19 18:03:18 -05:00
Vailin Choi
201af70c24 Fix for HDFFV-7853 H5Ocopy doesn't work with open identifiers
Changes made so that raw data for dataset objects are copied from cached info when possible instead of flushing objects to file and read them back in again.
2017-07-18 01:21:54 -05:00
Vailin Choi
ba17f16e4c Skip test in test/fheap.c when:
a) multi/split drivers and
b) persisting free-space or using paged aggregation strategy
because the library will fail file creation (temporary) for the above conditions.
2017-07-17 23:31:21 -05:00
Vailin Choi
66efce85e7 Changes made based on RFC review comments
Test the changes in a branch via daily testing.
2017-07-17 23:28:31 -05:00
Dana Robinson
d4234d0a98 Major rework of H5PL package code before bringing VOL changes
over.

Brings coding standards in line with the rest of the library,
enforces better software engineering principles, and makes
everything more maintainable.
2017-07-14 09:18:33 -07:00
Richard Warren
516f0e3661 Merge pull request #596 in HDFFV/hdf5 from GreaterThan-2GB-MPIO to develop
* commit '6a5aa46e936340ed540359290374fa909f9213a6':
  Added a brief outline for Large MPI-IO transfers into RELEASE.txt
  Fix up the ExpressMode check for skipping slow running tests.
  Include code fixes and additional modifications pointed out by code reviewers
  Commited changes to the development branch here to allow a pull request to be published
  Commit changes needed for pull request
2017-07-13 12:44:47 -05:00
Richard Warren
0c4c562cc5 Include code fixes and additional modifications pointed out by code reviewers 2017-07-10 16:17:26 -04:00
Vailin Choi
8935c921f7 Fix for HDFFV-10217 infinite loop in H5VM_power2up().
The function H5VM_power2up() returns the next power of 2 for n.
When n exceeds 2^63, it overflows and becomes 0 causing the infinite looping.
The fix ensures that the function checks for n >= 2^63 and returns 0.
2017-07-10 03:22:48 -05:00
Jordan Henderson
bd79a782b4 Suggested changes from code review 2017-07-07 13:31:43 -05:00
Jordan Henderson
104047e13b Amend header comment error
Suggested fix for allocating too small of a buffer for the chunk data
2017-07-06 14:21:26 -05:00
Jordan Henderson
610e76c75c Clean up remaining warnings 2017-07-06 08:02:29 -05:00
Richard Warren
64d33e5e6e Commited changes to the development branch here to allow a pull request to be published 2017-07-05 16:19:57 -04:00
Jordan Henderson
0531d92d74 Add prototype for H5D__cmp_filtered_collective_io_info_entry_owner 2017-07-05 14:36:54 -05:00
Dana Robinson
dc048e96f3 Marked H5I_REFERENCE as deprecated in H5Ipublic.h. 2017-07-05 11:49:20 -07:00