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6681 Commits

Author SHA1 Message Date
Quincey Koziol
81d67d5fdc Fix typo 2018-11-30 15:00:38 -06:00
Quincey Koziol
047269139f Add a couple of missing prototypes for static routines, along with updating 
a comment from VOL plugin -> connector.
 2018-11-30 14:12:32 -06:00
Songyu Lu
a89130553d HDFFV-10635: Allowing to write the same variable-length element more than once. 2018-11-30 09:02:03 -06:00
Quincey Koziol
beb7428f68 Switch H5VL_class_value_t from unsigned to int, and add "invalid" ID value. 2018-11-29 08:26:25 -06:00
Quincey Koziol
f3ad03a538 Switch H5VL_class_value_t from enum to unsigned integer 2018-11-28 22:21:45 -06:00
Quincey Koziol
d442fe2d98 Add support for "make check-vol", along with a few minor cleanups, etc. 2018-11-28 19:07:30 -06:00
Quincey Koziol
6eabeabdaa Refactor infrastructure for setting FAPL information from environment 
variables during testing, including connecting native, pass-through, and
dynamically loaded VOL connectors.   Also bring native and pass-through
VOL connectors into alignment, removing the "H5VLnative_private.h" header.
 2018-11-28 17:38:03 -06:00
Quincey Koziol
238a207f2d Add pass-through VOL connector 2018-11-28 10:26:03 -06:00
Quincey Koziol
2db4b6df13 Update API tracing info for VOL functions and regenerate trace macros for VOL 
API calls.
 2018-11-28 10:22:29 -06:00
Quincey Koziol
bf79e1bd76 Added 'notify' callback for async requests; switched VOL class and info 
comparison to return comparison value as parameter, so they can return error
values; "cancelled" -> "canceled"; switched order of 'wrap_object' and
'free_wrap_ctx' management callbacks.
 2018-11-27 22:15:34 -06:00
Quincey Koziol
3c5706ff5b Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into stackable_vol 2018-11-27 18:51:57 -06:00
Ray Lu
041a8295ff Merge pull request #1344 in HDFFV/hdf5 from ~SONGYULU/hdf5_ray:bugfix/HDFFV-10607-patches-for-warnings-in-the-core to develop 
* commit '14de476c8cb1b797ad43bea3c71dfb32bcd2131c':
  HDFFV-10607 Fixing two compiler warnings in the library.
 2018-11-27 14:59:43 -06:00
Dana Robinson
8cf3bfb14b Yanked all MPI-1 calls 2018-11-27 10:31:54 -08:00
Songyu Lu
14de476c8c HDFFV-10607 Fixing two compiler warnings in the library. 2018-11-27 09:04:42 -06:00
Dana Robinson
38c202df4d Updated H5S to use the MPI-2 function MPI_Type_get_exten() 
where available. OpenMPI 4.0 removed the deprecated MPI-1
MPI_type_extent() call by default, so this avoids needing
a special OpenMPI build.
 2018-11-26 22:10:06 -08:00
Quincey Koziol
f9b625ef5d Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into stackable_vol 2018-11-21 23:13:04 -06:00
Quincey Koziol
3055e499d5 Switch loc_params to VOL callbacks to pass struct by pointer instead of by 
value.
 2018-11-21 23:12:24 -06:00
Quincey Koziol
8939a2190f Add info_to_str and str_to_info "management" callbacks for serializing and 
deserializing a connector's info object.
 2018-11-21 00:56:13 -06:00
Larry Knox
7bf6e98bd9 Move wait_H5init.cmake up to config/cmake. 2018-11-20 12:09:14 -06:00
Larry Knox
8544aae3e8 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into develop 2018-11-20 11:58:27 -06:00
Larry Knox
720bbdfe61 Changes to CMake code to pause cmake/ctest, waiting for batch jobs to 
run and finish.
 2018-11-20 11:03:58 -06:00
Quincey Koziol
23ff0240ae Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into stackable_vol 2018-11-19 21:09:28 -06:00
Ray Lu
160107a97c Merge pull request #1335 in HDFFV/hdf5 from ~SONGYULU/hdf5_ray:bugfix/HDFFV-10571-cve-2018-17237-divided-by-zero to develop 
* commit 'c923cdad6e515c842f3795a5b6d754ad94021e09':
  HDFFV-10571: Minor format changes.
  HDFFV-10571: Minor change - reformatting the error check.
  HDFFV-10571: Minor change - adding the error check right after decoding of chunk dimension for safeguard.
  HDFFV-10571: Minor change - revised the comment to be clearer.
  HDFFV-10571 Divided by Zero vulnerability.  Minor fix: I added an error check to make sure the chunk size is not zero.
 2018-11-19 17:20:06 -06:00
Quincey Koziol
6c99961bb2 Revert some of the changes to support the original property list value of 
metadata read attempts.
 2018-11-18 00:57:09 -06:00
Quincey Koziol
d0d360ff2d Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into stackable_vol 2018-11-18 00:39:27 -06:00
Quincey Koziol
59c28780d3 Add VOL connector info to the flie access property list returned from 
H5Fget_access_plist().  Also, other misc. cleanups, etc.
 2018-11-18 00:38:29 -06:00
Songyu Lu
c923cdad6e HDFFV-10571: Minor format changes. 2018-11-15 16:50:13 -06:00
Songyu Lu
198bc059b0 HDFFV-10571: Minor change - reformatting the error check. 2018-11-15 15:05:23 -06:00
Songyu Lu
c132cb5565 HDFFV-10571: Minor change - adding the error check right after decoding of chunk dimension for safeguard. 2018-11-15 14:57:26 -06:00
Ray Lu
e07d097da1 Merge pull request #1316 in HDFFV/hdf5 from ~SONGYULU/hdf5_ray:bugfix/HDFFV-10601-issues-with-chunk-cache-hash to develop 
* commit 'cd13d24e5140578a880aebe4e2d8b899179d0870':
  HDFFV-10601: I added error checking to the HDF5 functions.
  HDFFV10601: Adding performance test to verify the improvement.
  HDFFV-10601: I changed to a better way to calculate the number of chunks in a dataset.
  HDFFV-10601 Issues with chunk cache hash value calcuation:
 2018-11-15 09:43:46 -06:00
Dana Robinson
3edd97731e Renamed h5repart's -family_to_sec2 to -family_to_single. 2018-11-14 13:37:31 -08:00
Songyu Lu
1d89a55590 HDFFV-10571: Minor change - revised the comment to be clearer. 2018-11-14 14:54:03 -06:00
Songyu Lu
78af4c21cb HDFFV-10571 Divided by Zero vulnerability. Minor fix: I added an error check to make sure the chunk size is not zero. 2018-11-14 14:31:37 -06:00
Larry Knox
6cbd463d41 Add script and changes to wait for H5Tinit.c 
Add more sample batch scripts, specifically for sbatch, not for knl
cross compile.
Don't run parallel tests when no parallel test script is configured in
HDF5options.cmake.
 2018-11-14 11:19:28 -06:00
Quincey Koziol
e2ed2edf6e Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into stackable_vol 2018-11-12 16:23:54 -06:00
Allen Byrne
7e204759f8 Fix generate file commands 2018-11-12 12:26:11 -06:00
Quincey Koziol
a442ce607b Fix a few error messages 2018-11-12 12:13:18 -06:00
Allen Byrne
ba609275d8 Fix target depends 2018-11-12 11:52:46 -06:00
Quincey Koziol
1118672e8c Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into stackable_vol 2018-11-10 11:54:58 -06:00
Quincey Koziol
ca1b9025fe Switch switch remainder of API routines to use VOL callbacks. 2018-11-10 11:54:20 -06:00
Allen Byrne
1d2f7ca490 TRILAB-36 only copy shared generated 2018-11-09 11:20:48 -06:00
Songyu Lu
3a13bb72e8 HDFFV-10601: I changed to a better way to calculate the number of chunks in a dataset. 2018-11-08 15:41:49 -06:00
Songyu Lu
709704528c Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~songyulu/hdf5_ray into bugfix/HDFFV-10601-issues-with-chunk-cache-hash 2018-11-08 10:16:47 -06:00
Quincey Koziol
140f72b748 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into stackable_vol 2018-11-07 15:20:28 -06:00
Quincey Koziol
ef9ffc630a Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into stackable_vol 2018-11-06 10:44:17 -06:00
Allen Byrne
1bd3a28858 TRILAB-36 add custom target on generated files 2018-11-06 09:35:11 -06:00
hdftest
db48399bd8 Snapshot version 1.11 release 3. 2018-11-05 12:21:13 -06:00
Quincey Koziol
afd54bbe5c Remove most debugging shims & scaffolding. 2018-11-04 02:09:27 -06:00
Quincey Koziol
1daa7b830a Switch driver | plugin => connector. 2018-11-04 01:27:23 -05:00
Quincey Koziol
deb75622ca Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into stackable_vol 2018-11-04 00:25:36 -05:00