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Author SHA1 Message Date
Allen Byrne
3904f27ead Merge pull request #2480 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_12 to hdf5_1_12 
* commit '13bba40029b2ff5f64600b497cdce94f8dba0bcc':
  Fix shadowed type
  TRILAB-192 - cleanup edits and match CMake CXX to autotools
  Add missing " and update function calls incorrectly namedload_gcc_arguments. Commit changes to gnu-cxxflags to remove unmatched " and to gnu-fflags to not add C warnings flags to H5_FCFLAGS.
  TRILAB-192 update LTparse files
  TRILAB-192 - merge changes from develop
  Update release note for CMake warnings
  Correct extra flags
  TRILAB-192 merging warnings changes from develop
  TRILAB-24 use CheckStructHasMember CMake module
 2020-04-13 14:31:33 -05:00
Allen Byrne
13bba40029 Fix shadowed type 2020-04-13 10:27:40 -05:00
Allen Byrne
c622e54bb2 TRILAB-192 - cleanup edits and match CMake CXX to autotools 2020-04-13 08:41:17 -05:00
Larry Knox
fbd46d674f Add missing " and update function calls incorrectly 
namedload_gcc_arguments.
Commit changes to gnu-cxxflags to remove unmatched " and to gnu-fflags
to not add C warnings flags to H5_FCFLAGS.
 2020-04-11 20:51:30 -05:00
Allen Byrne
18e089e4e4 TRILAB-192 update LTparse files 2020-04-07 17:58:23 -05:00
vchoi
365f08e555 Fix according to PR feedback. 2020-04-07 14:52:11 -05:00
Allen Byrne
6108186feb TRILAB-192 - merge changes from develop 
Single source, config files, for warnings for both autotools and CMake.
Update CMake libraries, tools, tests to use correct flags.
 2020-04-07 09:47:29 -05:00
vchoi
c566935876 Fix error in previous merge: should use NULL instead of FAIL. 2020-04-06 21:32:28 -05:00
Vailin Choi
9b8d28754a Merge pull request #30 in ~VCHOI/my_third_fork from hdf5_1_12 to bugfix/112_dtype_close_on_error 
* commit 'db3f89ce9dc7eae17cb15d39e402112c3fbd2955':
 2020-04-06 19:38:32 -05:00
Allen Byrne
d2b7bacea1 Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_12) 
* commit 'db3f89ce9dc7eae17cb15d39e402112c3fbd2955':
  Merge pull request #2461 in HDFFV/hdf5 from ~VCHOI/my_third_fork:bugfix/dtype_close_on_error to develop
 2020-04-05 11:06:28 -05:00
Allen Byrne
965c024c6e Update release note for CMake warnings 2020-04-03 12:58:43 -05:00
Vailin Choi
db3f89ce9d Merge pull request #2488 in HDFFV/hdf5 from ~VCHOI/my_third_fork:bugfix/112_dtype_close_on_error to hdf5_1_12 
* commit 'b4d06a7e80d62b93e64abd44425f90ec1e15df81':
  Merge pull request #2461 in HDFFV/hdf5 from ~VCHOI/my_third_fork:bugfix/dtype_close_on_error to develop
 2020-04-03 11:56:37 -05:00
Vailin Choi
b4d06a7e80 Merge pull request #2461 in HDFFV/hdf5 from ~VCHOI/my_third_fork:bugfix/dtype_close_on_error to develop 
* commit 'afdcac28b85d690eebc80ab568fa5266081baaaa':
  A fix in the cleaning up code for datatype when datatype initialization via H5D__init_type() fails. This is triggered by the tests for revised references when the libver bounds setting does not allow version 4 datatype message to be created.  The test failure is abort core dumped. This is due to the datatype initialization fails before the datatype ID is registered. The datatype cleanup code should provide for the above situation. The code to fix the problem is the same as what is done in H5D__open_oid().
 2020-04-02 18:30:11 -05:00
Allen Byrne
74c388e640 Correct extra flags 2020-04-01 11:47:16 -05:00
Allen Byrne
ac32ce96a3 TRILAB-192 merging warnings changes from develop 2020-03-30 09:28:05 -05:00
Allen Byrne
490cb6f9cd Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_12) 
* commit '16b909a7488d8288206dd0bb7cf9ef7036d7f543':
  Update release notes about H5get_alloc_stats() and H5get_free_list_sizes().
  Was checking the wrong compiler macro.
  Correct failure when allocation tracking are disabled.
  Remove VCS merge conflict
  Revise API for H5get_alloc_stats() to take a struct instead of separate values.
  Add routines to query the library's free list sizes and allocation stats.
 2020-03-29 07:46:54 -05:00
Quincey Koziol
16b909a748 Merge pull request #2468 in HDFFV/hdf5 from alloc_stats_1_12 to hdf5_1_12 
* commit '0f92c0e908454bb025361060d89de805e4829302':
  Update release notes about H5get_alloc_stats() and H5get_free_list_sizes().
  Was checking the wrong compiler macro.
  Correct failure when allocation tracking are disabled.
  Remove VCS merge conflict
  Revise API for H5get_alloc_stats() to take a struct instead of separate values.
  Add routines to query the library's free list sizes and allocation stats.
 2020-03-28 15:49:20 -05:00
Allen Byrne
5cbdef5840 TRILAB-24 use CheckStructHasMember CMake module 2020-03-27 15:44:56 -05:00
Quincey Koziol
0f92c0e908 Update release notes about H5get_alloc_stats() and H5get_free_list_sizes(). 2020-03-25 16:45:47 -05:00
Quincey Koziol
32742c0890 Was checking the wrong compiler macro. 2020-03-25 15:54:50 -05:00
Quincey Koziol
a45a994bd4 Correct failure when allocation tracking are disabled. 2020-03-24 13:05:49 -05:00
Quincey Koziol
8f0c6f0e83 Remove VCS merge conflict 2020-03-24 12:13:13 -05:00
Quincey Koziol
5144eedd2e Revise API for H5get_alloc_stats() to take a struct instead of separate values. 2020-03-23 18:05:37 -05:00
Quincey Koziol
4065a506bc Add routines to query the library's free list sizes and allocation stats. 2020-03-23 18:04:33 -05:00
Vailin Choi
3656fb07ef Merge pull request #2454 in HDFFV/hdf5 from ~VCHOI/my_third_fork:bugfix/v112_seg_fault_sel_compat to hdf5_1_12 
* commit '3b2db5eb19594fa44357e63e36f3b294fbae463d':
  Merge pull request #2451 in HDFFV/hdf5 from ~VCHOI/my_third_fork:bugfix/develop_seg_fault_sel_compat to develop
 2020-03-19 18:11:07 -05:00
Vailin Choi
3b2db5eb19 Merge pull request #2451 in HDFFV/hdf5 from ~VCHOI/my_third_fork:bugfix/develop_seg_fault_sel_compat to develop 
* commit '81b1ed4e1724b8a6a731ab2b8fb03234a8b49d15':
  Fix issues when deserializing point/all/none selection with version beyond the library's supported version: (1) Verify the decoded version before proceeding further with deserialization (2) Close the dataspace if errors occurred after opening the dataspace
 2020-03-16 14:33:52 -05:00
Larry Knox
fbda71a49e Merge pull request #2448 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_12 to hdf5_1_12 
* commit 'fe1f4d031e3aeb2702639c2b7e11f76811309f48':
  Add \d to list of characters allowed after - in versions.
 2020-03-12 13:25:56 -05:00
Larry Knox
fe1f4d031e Add \d to list of characters allowed after - in versions. 2020-03-12 10:01:06 -05:00
Allen Byrne
602b5fda4f Merge pull request #2437 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_12 to hdf5_1_12 
* commit 'e3c555b9034a63d8ae6e079d44b44552e33a0161':
  Remove system command from valgrind reports
 2020-03-04 09:29:17 -06:00
Allen Byrne
e3c555b903 Remove system command from valgrind reports 2020-03-02 14:11:35 -06:00
Jake Smith
ce16f03528 Merge pull request #2425 in HDFFV/hdf5 from ~JAKE.SMITH/hdf5:hdf5_1_12 to hdf5_1_12 
* commit '46f0de82c7674a28b08e4da3b0149c793b762203':
  Fix improper signing key null check. (HDFFV-11015)
  Add updates from develop, PR 1958.
 2020-02-29 23:39:36 -06:00
Kimmy Mu
176a7a8659 Merge pull request #2429 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/type_cast_12 to hdf5_1_12 
* commit '7e6fd7e4adf70a40deb0d90e3e9b55d663832a43':
  revert type cast
 2020-02-28 22:12:54 -06:00
Scot Breitenfeld
e4641e277b Merge pull request #2421 in HDFFV/hdf5 from ~BRTNFLD/hdf5_msb:hdf5_1_12 to hdf5_1_12 
* commit 'b9909de9abf656b0a411bfbd3b2e9a7403886fa8':
  Fixed configure issue when building HDF5 with NAG Fortran 7.0.
  Fixed issue building HDF5 with NAG Fortran 7.0.
 2020-02-28 17:11:18 -06:00
Jacob Smith
46f0de82c7 Fix improper signing key null check. (HDFFV-11015) 2020-02-28 17:09:45 -06:00
M. Scot Breitenfeld
b9909de9ab Merge branch 'hdf5_1_12' of ssh://bitbucket.hdfgroup.org:7999/~brtnfld/hdf5_msb into hdf5_1_12 2020-02-28 16:18:01 -06:00
M. Scot Breitenfeld
5e0cc7846d Fixed configure issue when building HDF5 with NAG Fortran 7.0. 
HDF5 now accounts for the addition of half-precision floating-point
in NAG 7.0 with a KIND=16.

(MSB - 2020/02/28, HDFFV-11033)
 2020-02-28 16:16:53 -06:00
Quincey Koziol
aeda2170af Merge pull request #2420 in HDFFV/hdf5 from revise_get_offset_1_12 to hdf5_1_12 
* commit '9ac3f9526aeb0191eb36fc9eec4c63fa72a13697':
  Switch the 'get offset' operation from a dataset 'get' callback to a [native] dataset 'optional' operation.
 2020-02-28 16:11:14 -06:00
M. Scot Breitenfeld
c53da6ff08 Merge branch 'hdf5_1_12' of ssh://bitbucket.hdfgroup.org:7999/~brtnfld/hdf5_msb into hdf5_1_12 2020-02-28 16:07:55 -06:00
kmu
7e6fd7e4ad revert type cast 2020-02-28 14:49:40 -06:00
Quincey Koziol
9ac3f9526a Switch the 'get offset' operation from a dataset 'get' callback to a [native] 
dataset 'optional' operation.
 2020-02-28 14:29:17 -06:00
Larry Knox
8c0d1b248a Merge pull request #2418 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_12 to hdf5_1_12 
* commit 'ec6162f7bbd77b411bbefe66f5cc6a06e6094e0f':
  One more change to RELEASE.txt.
  Clear RELEASE.txt HDF5 1.12.0 entries.
 2020-02-28 14:17:03 -06:00
Larry Knox
ec6162f7bb One more change to RELEASE.txt. 2020-02-28 14:13:04 -06:00
Larry Knox
8d1820390d Clear RELEASE.txt HDF5 1.12.0 entries. 2020-02-28 14:04:02 -06:00
M. Scot Breitenfeld
5dec17c563 Fixed issue building HDF5 with NAG Fortran 7.0. 
Accounted for the additon of half precision floating-point with a KIND=16.

HDFFV-11033
 2020-02-28 13:43:02 -06:00
Larry Knox
b3e11c7eaf Merge pull request #2416 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_12 to hdf5_1_12 
* commit '2c43125dbe01e2c3c1f8a05ba38d65aad0e9d229':
  Modify expression to match mpicc built with Intel as intel compiler, not gcc.
 2020-02-27 22:03:44 -06:00
Larry Knox
2c43125dbe Modify expression to match mpicc built with Intel as intel compiler, not 
gcc.
 2020-02-27 17:09:14 -06:00
Allen Byrne
c64632b752 Merge pull request #2413 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_12 to hdf5_1_12 
* commit 'b551bee9cb2440d4b32d0a58e87e8047b7fef7f4':
  Add java version and reference libsettings
 2020-02-27 14:56:02 -06:00
Allen Byrne
b551bee9cb Add java version and reference libsettings 2020-02-27 10:51:49 -06:00
Larry Knox
6db2b2a41c Merge pull request #2410 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_12 to hdf5_1_12 
* commit '1e5d4257c4e88a9368899798672bf3e3cc37971b':
  Update examples and fix version references
  Move MODEL check to before usage in CTestScript.cmake.
 2020-02-26 22:07:09 -06:00
Allen Byrne
1e5d4257c4 Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_12) 
* commit '6bf98769c1f264ad414c949c917ff61cdb16f35a':
  Merge pull request #2325 in HDFFV/hdf5 from ~DYOUNG/werror:h5t_copy to develop
 2020-02-26 14:57:25 -06:00