532 lines
17 KiB
Java
532 lines
17 KiB
Java
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
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* Copyright by The HDF Group. *
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* All rights reserved. *
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* *
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* This file is part of HDF5. The full HDF5 copyright notice, including *
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* terms governing use, modification, and redistribution, is contained in *
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* the COPYING file, which can be found at the root of the source code *
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* distribution tree, or in https://www.hdfgroup.org/licenses. *
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* If you do not have access to either file, you may request a copy from *
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* help@hdfgroup.org. *
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* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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package test;
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import static org.junit.Assert.assertEquals;
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import static org.junit.Assert.assertFalse;
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import static org.junit.Assert.assertNotNull;
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import static org.junit.Assert.assertTrue;
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import static org.junit.Assert.fail;
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import java.io.File;
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import hdf.hdf5lib.H5;
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import hdf.hdf5lib.HDF5Constants;
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import hdf.hdf5lib.exceptions.HDF5Exception;
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import hdf.hdf5lib.exceptions.HDF5FunctionArgumentException;
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import hdf.hdf5lib.exceptions.HDF5LibraryException;
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import org.junit.After;
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import org.junit.Before;
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import org.junit.Ignore;
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import org.junit.Rule;
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import org.junit.Test;
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import org.junit.rules.TestName;
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public class TestH5R {
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@Rule
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public TestName testname = new TestName();
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private static final String H5_FILE = "testH5R.h5";
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private static final int DIM_X = 4;
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private static final int DIM_Y = 6;
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long H5fid = HDF5Constants.H5I_INVALID_HID;
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long H5dsid = HDF5Constants.H5I_INVALID_HID;
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long H5did = HDF5Constants.H5I_INVALID_HID;
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long H5gid = HDF5Constants.H5I_INVALID_HID;
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long H5did2 = HDF5Constants.H5I_INVALID_HID;
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long[] H5dims = {DIM_X, DIM_Y};
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int[][] dset_data = new int[DIM_X][DIM_Y];
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int FILLVAL = 99;
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private final void _deleteFile(String filename)
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{
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File file = null;
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try {
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file = new File(filename);
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}
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catch (Throwable err) {
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}
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if (file.exists()) {
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try {
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file.delete();
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}
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catch (SecurityException e) {
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e.printStackTrace();
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}
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}
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assertFalse("TestH5R._deleteFile file still exists ", file.exists());
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}
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private final long _createDataset(long fid, long dsid, String name, long dapl)
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{
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long did = HDF5Constants.H5I_INVALID_HID;
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try {
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did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32BE, dsid, HDF5Constants.H5P_DEFAULT,
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HDF5Constants.H5P_DEFAULT, dapl);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("H5.H5Dcreate: " + err);
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}
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assertTrue("TestH5R._createDataset: ", did > 0);
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return did;
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}
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private final long _createGroup(long fid, String name)
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{
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long gid = HDF5Constants.H5I_INVALID_HID;
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try {
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gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
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HDF5Constants.H5P_DEFAULT);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("H5.H5Gcreate: " + err);
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}
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assertTrue("TestH5R._createGroup: ", gid > 0);
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return gid;
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}
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@Before
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public void createH5file() throws NullPointerException, HDF5Exception
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{
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assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
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System.out.print(testname.getMethodName());
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try {
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H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
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HDF5Constants.H5P_DEFAULT);
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H5dsid = H5.H5Screate_simple(2, H5dims, null);
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H5gid = _createGroup(H5fid, "Group1");
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H5did2 = _createDataset(H5gid, H5dsid, "dset2", HDF5Constants.H5P_DEFAULT);
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H5did = _createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT);
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// Initialize the dataset.
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for (int indx = 0; indx < DIM_X; indx++)
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for (int jndx = 0; jndx < DIM_Y; jndx++)
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dset_data[indx][jndx] = FILLVAL;
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try {
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if (H5did >= 0)
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H5.H5Dwrite(H5did, HDF5Constants.H5T_NATIVE_INT, HDF5Constants.H5S_ALL,
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HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, dset_data[0]);
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}
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catch (Exception e) {
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e.printStackTrace();
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}
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("TestH5R.createH5file: " + err);
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}
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assertTrue("TestH5R.createH5file: H5.H5Fcreate: ", H5fid > 0);
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assertTrue("TestH5R.createH5file: H5.H5Screate_simple: ", H5dsid > 0);
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assertTrue("TestH5R.createH5file: _createDataset: ", H5did > 0);
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H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
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}
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@After
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public void deleteH5file() throws HDF5LibraryException
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{
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if (H5dsid > 0)
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try {
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H5.H5Sclose(H5dsid);
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}
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catch (Exception ex) {
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}
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if (H5did > 0)
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try {
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H5.H5Dclose(H5did);
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}
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catch (Exception ex) {
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}
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if (H5fid > 0)
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try {
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H5.H5Fclose(H5fid);
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}
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catch (Exception ex) {
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}
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if (H5gid > 0)
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try {
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H5.H5Gclose(H5gid);
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}
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catch (Exception ex) {
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}
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if (H5did2 > 0)
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try {
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H5.H5Dclose(H5did2);
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}
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catch (Exception ex) {
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}
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_deleteFile(H5_FILE);
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System.out.println();
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}
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// Test v1.12 APIs params
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@Test
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public void testH5Rget_object()
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{
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int ref_type = HDF5Constants.H5R_OBJECT2;
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long ret_val = -1;
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byte[] ref = null;
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String name = "";
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String objName = "/dset";
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try {
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ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Rget_object: H5Rcreate_object " + err);
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}
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try {
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ret_val = H5.H5Rget_type(ref);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Rget_object: H5Rget_type: " + err);
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}
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assertTrue("testH5Rget_object: H5Rget_type", ret_val == ref_type);
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try {
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name = H5.H5Rget_file_name(ref);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Rget_object: H5Rget_file_name: " + err);
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}
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assertTrue("testH5Rget_object: H5Rget_file_name", H5_FILE.equals(name));
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try {
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name = H5.H5Rget_obj_name(ref, HDF5Constants.H5P_DEFAULT);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Rget_object: H5Rget_obj_name: " + err);
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}
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assertTrue("The name of the object: ", objName.equals(name));
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H5.H5Rdestroy(ref);
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}
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@Test
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public void testH5Rget_obj_type3()
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{
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int obj_type = -1;
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byte[] ref = null;
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String objName = "/dset";
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try {
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ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Rget_obj_type3: H5Rcreate_object " + err);
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}
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try {
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obj_type = H5.H5Rget_obj_type3(ref, HDF5Constants.H5P_DEFAULT);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Rget_obj_type3: H5.H5Rget_obj_type3: " + err);
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}
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assertEquals(obj_type, HDF5Constants.H5O_TYPE_DATASET);
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H5.H5Rdestroy(ref);
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}
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@Test
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public void testH5Rcreate_regionref_object()
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{
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byte[] ref = null;
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String objName = "/dset";
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long start[] = {2, 2}; // Starting location of hyperslab
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long stride[] = {1, 1}; // Stride of hyperslab
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long count[] = {1, 1}; // Element count of hyperslab
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long block[] = {3, 3}; // Block size of hyperslab
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// Select 3x3 hyperslab for reference
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try {
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H5.H5Sselect_hyperslab(H5dsid, HDF5Constants.H5S_SELECT_SET, start, stride, count, block);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Rget_object: H5Sselect_hyperslab " + err);
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}
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try {
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ref = H5.H5Rcreate_region(H5fid, objName, H5dsid, HDF5Constants.H5P_DEFAULT);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Rget_object: H5Rcreate_region " + err);
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}
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assertNotNull(ref);
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H5.H5Rdestroy(ref);
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}
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// These tests need to be updated with new APIs
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// @Test//
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// public void testH5Rget_group() {
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// long loc_id = H5fid;
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// int ref_type = HDF5Constants.H5R_OBJECT2;
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// long ret_val = -1;
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// byte[] ref = null;
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// String name = "";
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// String objName = "/dset";
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//
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// try {
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// ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT);
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// }
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// catch (Throwable err) {
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// err.printStackTrace();
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// fail("testH5Rget_object: H5Rcreate_object " + err);
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// }
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// try {
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// dataset_id= H5.H5Rdereference(H5fid, HDF5Constants.H5P_DEFAULT,
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// HDF5Constants.H5R_DATASET_REGION, ref1);
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//
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// //Create reference on group
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// ref2 = H5.H5Rcreate(H5gid, "/Group1", HDF5Constants.H5R_OBJECT, -1);
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// group_id= H5.H5Rdereference(H5gid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_OBJECT,
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// ref2); assertNotNull(ref1); assertNotNull(ref2); assertTrue(dataset_id >= 0);
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// assertTrue(group_id >= 0);
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// }
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// catch (Throwable err) {
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// err.printStackTrace();
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// fail("TestH5Rdereference " + err);
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// }
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// finally {
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// try {H5.H5Dclose(dataset_id);} catch (Exception ex) {}
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// try {H5.H5Gclose(group_id);} catch (Exception ex) {}
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// }
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// }
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// @Test//
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// public void testH5Rget_region_dataset() {
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// long loc_id = H5fid;
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// int ref_type = HDF5Constants.H5R_OBJECT2;
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// long ret_val = -1;
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// byte[] ref = null;
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// String name = "";
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// String objName = "/dset";
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//
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// try {
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// ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT);
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// }
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// catch (Throwable err) {
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// err.printStackTrace();
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// fail("testH5Rget_object: H5Rcreate_object " + err);
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// }
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// try {
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// dsid = H5.H5Rget_region(H5fid, HDF5Constants.H5R_DATASET_REGION, ref);
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// assertNotNull(ref);
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// assertTrue(dsid >= 0);
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// }
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// catch (Throwable err) {
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// err.printStackTrace();
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// fail("TestH5Rget_region: " + err);
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// }
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// finally {
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// try {H5.H5Sclose(dsid);} catch (Exception ex) {}
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// }
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// }
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// @Test//
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// public void testH5Rget_attr() {
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// long loc_id = H5fid;
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// int ref_type = HDF5Constants.H5R_OBJECT2;
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// long ret_val = -1;
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// byte[] ref = null;
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// String name = "";
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// String objName = "/dset";
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//
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// try {
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// ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT);
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// }
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// catch (Throwable err) {
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// err.printStackTrace();
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// fail("testH5Rget_object: H5Rcreate_object " + err);
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// }
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// try {
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// dsid = H5.H5Rget_region(H5fid, HDF5Constants.H5R_DATASET_REGION, ref);
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// assertNotNull(ref);
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// assertTrue(dsid >= 0);
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// }
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// catch (Throwable err) {
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// err.printStackTrace();
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// fail("TestH5Rget_region: " + err);
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// }
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// finally {
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// try {H5.H5Sclose(dsid);} catch (Exception ex) {}
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// }
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// }
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// Test parameters to H5Rcreate_object
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@Test(expected = NullPointerException.class)
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public void testH5Rcreate_object_Nullname() throws Throwable
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{
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String name = null;
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H5.H5Rcreate_object(H5fid, name, HDF5Constants.H5P_DEFAULT);
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}
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@Test(expected = HDF5FunctionArgumentException.class)
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public void testH5Rget_name_Invalidloc() throws Throwable
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{
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String name = "";
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H5.H5Rcreate_object(-1, name, HDF5Constants.H5P_DEFAULT);
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}
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// Test parameters to H5Rcreate_region
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@Test(expected = NullPointerException.class)
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public void testH5Rcreate_region_Nullname() throws Throwable
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{
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String name = null;
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H5.H5Rcreate_region(H5fid, name, -1, HDF5Constants.H5P_DEFAULT);
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}
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@Test(expected = HDF5FunctionArgumentException.class)
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public void testH5Rcreate_region_Invalidloc() throws Throwable
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{
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String name = "";
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H5.H5Rcreate_region(-1, name, -1, HDF5Constants.H5P_DEFAULT);
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}
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// Test parameters to H5Rcreate_attr
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@Test(expected = NullPointerException.class)
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public void testH5Rcreate_attr_Nullname() throws Throwable
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{
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String name = null;
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String attrname = "";
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H5.H5Rcreate_attr(H5fid, name, attrname, HDF5Constants.H5P_DEFAULT);
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}
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@Test(expected = NullPointerException.class)
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public void testH5Rcreate_attr_Nullattrname() throws Throwable
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{
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String name = "";
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String attrname = null;
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H5.H5Rcreate_attr(H5fid, name, attrname, HDF5Constants.H5P_DEFAULT);
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}
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@Test(expected = HDF5FunctionArgumentException.class)
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public void testH5Rcreate_attr_Invalidloc() throws Throwable
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{
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String name = "";
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String attrname = "";
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H5.H5Rcreate_attr(-1, name, attrname, HDF5Constants.H5P_DEFAULT);
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}
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// Test parameters to H5Rdestroy
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@Test(expected = NullPointerException.class)
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public void testH5Rdestroy_Nullref() throws Throwable
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{
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byte[] ref = null;
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H5.H5Rdestroy(ref);
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}
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// Test parameters to H5Rget_type
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@Test(expected = NullPointerException.class)
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public void testH5Rget_type_Nullref() throws Throwable
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{
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byte[] ref = null;
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H5.H5Rget_type(ref);
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}
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// Test parameters to H5Requal
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@Test(expected = NullPointerException.class)
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public void testH5Requal_Nullref1() throws Throwable
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{
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byte[] ref1 = null;
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byte[] ref2 = {0, 0, 0, 0};
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H5.H5Requal(ref1, ref2);
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}
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@Test(expected = NullPointerException.class)
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public void testH5Requal_Nullref2() throws Throwable
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{
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byte[] ref1 = {0, 0, 0, 0};
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byte[] ref2 = null;
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H5.H5Requal(ref1, ref2);
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}
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// Test parameters to H5Rcopy
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@Test(expected = NullPointerException.class)
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public void testH5Rcopy_Nullref1() throws Throwable
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{
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byte[] ref1 = null;
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byte[] ref2 = H5.H5Rcopy(ref1);
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}
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// Test parameters to H5Ropen_object
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@Test(expected = NullPointerException.class)
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public void testH5Ropen_object_Nullref() throws Throwable
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{
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byte[] ref = null;
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H5.H5Ropen_object(ref, -1, -1);
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}
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// Test parameters to H5Ropen_region
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@Test(expected = NullPointerException.class)
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public void testH5Ropen_region_Nullref() throws Throwable
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{
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byte[] ref = null;
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H5.H5Ropen_region(ref, -1, -1);
|
|
}
|
|
|
|
// Test parameters to H5Ropen_attr
|
|
@Test(expected = NullPointerException.class)
|
|
public void testH5Ropen_attr_Nullref() throws Throwable
|
|
{
|
|
byte[] ref = null;
|
|
H5.H5Ropen_attr(ref, -1, -1);
|
|
}
|
|
|
|
// Test parameters to H5Rget_obj_type3
|
|
@Test(expected = NullPointerException.class)
|
|
public void testH5Rget_obj_type3_Nullref() throws Throwable
|
|
{
|
|
byte[] ref = null;
|
|
H5.H5Rget_obj_type3(ref, -1);
|
|
}
|
|
|
|
// Test parameters to H5Rget_file_name
|
|
@Test(expected = NullPointerException.class)
|
|
public void testH5Rget_file_name_Nullref() throws Throwable
|
|
{
|
|
byte[] ref = null;
|
|
H5.H5Rget_file_name(ref);
|
|
}
|
|
|
|
// Test parameters to H5Rget_obj_name
|
|
@Test(expected = NullPointerException.class)
|
|
public void testH5Rget_obj_name_Nullref() throws Throwable
|
|
{
|
|
byte[] ref = null;
|
|
H5.H5Rget_obj_name(ref, -1);
|
|
}
|
|
|
|
// Test parameters to H5Rget_attr_name
|
|
@Test(expected = NullPointerException.class)
|
|
public void testH5Rget_attr_name_Nullref() throws Throwable
|
|
{
|
|
byte[] ref = null;
|
|
H5.H5Rget_attr_name(ref);
|
|
}
|
|
}
|