* OESS-98 convert plugin option to FetchContent, add tests * Fixes for pkcfg files because of plugin option * OESS-98 fix tools test for plugins * Keep doxygen comments under 100 chars long - format hint * Whitespace * HDFFV-11144 - Reclassify CMake messages * HDFFV-11099/11100 added help text * Reworked switch statement to compare string instead * Fix typo * Update CDash mode * Correct name of threadsafe * Correct option name * Undo accidental commit * Note LLVM 10 to 11 format default changes * Update format plugin * Undo clang-format version 11 changes * One more correction * Update supported platforms * Revert whitespace changes * Correct whitespace * Changes from PR#3 * HDFFV-11213 added option to control gcc10 warnings diagnostics * HDFFV-11212 Use the new references correctly in JNI utility and tests * format source * Fix typo * Add new test file * HDFFV-11212 - update test and remove unused arg * Minor non-space formatting changes * Use H5I_INVALID_ID instead of "-1" * source formatting * add missing testfile, update jni function * Undo commit of debug code * remove mislocated file * Fix h5repack test for handling of fapls and id close * Update h5diff test files usage text * HDFFV-11212 add new ref tests for JNI export dataset * src format update * Remove blank line typo * src format typo * long double requires %Lg * Another long double foramt specifer S.B. %Lg * issue with t128bit test * Windows issue with h5dump and type. * Fix review issues * refactor function nesting and fix error checks * format fixes * Remove untested functions and javadoc quiet comments * Restore TRY block. * Change string append errors to memory exception * revert to H5_JNI_FATAL_ERROR - support functions need work * Add assertion error for h5util functions * remove duplicate function * format fix * Revert HD function error handling * Update copyright comments
384 lines
13 KiB
Java
384 lines
13 KiB
Java
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
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* Copyright by The HDF Group. *
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* Copyright by the Board of Trustees of the University of Illinois. *
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* All rights reserved. *
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* *
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* This file is part of HDF5. The full HDF5 copyright notice, including *
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* terms governing use, modification, and redistribution, is contained in *
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* the COPYING file, which can be found at the root of the source code *
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* distribution tree, or in https://www.hdfgroup.org/licenses. *
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* If you do not have access to either file, you may request a copy from *
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* help@hdfgroup.org. *
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* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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package test;
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import static org.junit.Assert.assertTrue;
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import static org.junit.Assert.fail;
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import hdf.hdf5lib.H5;
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import hdf.hdf5lib.HDF5Constants;
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import hdf.hdf5lib.exceptions.HDF5LibraryException;
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import org.junit.After;
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import org.junit.Before;
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import org.junit.Rule;
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import org.junit.Test;
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import org.junit.rules.TestName;
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public class TestH5Sbasic {
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@Rule public TestName testname = new TestName();
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@Before
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public void checkOpenIDs() {
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assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0);
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System.out.print(testname.getMethodName());
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}
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@After
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public void nextTestName() {
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System.out.println();
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}
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@Test//(expected = HDF5LibraryException.class)
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public void testH5Sclose_invalid() throws Throwable {
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long sid = H5.H5Sclose(-1);
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assertTrue(sid == 0);
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}
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@Test(expected = HDF5LibraryException.class)
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public void testH5Screate_invalid() throws Throwable {
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H5.H5Screate(-1);
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}
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@Test(expected = IllegalArgumentException.class)
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public void testH5Sget_simple_extent_type_invalid() throws Throwable {
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H5.H5Sget_simple_extent_type(-1);
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}
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@Test
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public void testH5Screate_scalar() {
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long sid = HDF5Constants.H5I_INVALID_HID;
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int class_type = -1;
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try {
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sid = H5.H5Screate(HDF5Constants.H5S_SCALAR);
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assertTrue("H5.H5Screate_scalar",sid > 0);
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class_type = H5.H5Sget_simple_extent_type(sid);
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assertTrue("H5.H5Screate_scalar: type",class_type == HDF5Constants.H5S_SCALAR);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("H5.H5Screate: " + err);
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}
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finally {
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try {H5.H5Sclose(sid);} catch (Exception ex) {}
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}
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}
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@Test
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public void testH5Screate_null() {
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long sid = HDF5Constants.H5I_INVALID_HID;
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int class_type = -1;
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try {
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sid = H5.H5Screate(HDF5Constants.H5S_NULL);
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assertTrue("H5.H5Screate_null", sid > 0);
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class_type = H5.H5Sget_simple_extent_type(sid);
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assertTrue("H5.H5Screate_null: type", class_type == HDF5Constants.H5S_NULL);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("H5.H5Screate: " + err);
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}
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finally {
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try {H5.H5Sclose(sid);} catch (Exception ex) {}
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}
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}
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@Test(expected = NullPointerException.class)
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public void testH5Screate_simple_dims_null() throws Throwable {
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H5.H5Screate_simple(2, (long[])null, null);
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}
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@Test(expected = IllegalArgumentException.class)
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public void testH5Screate_simple_rank_invalid() throws Throwable {
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long dims[] = {5, 5};
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H5.H5Screate_simple(-1, dims, null);
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}
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@Test(expected = IllegalArgumentException.class)
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public void testH5Screate_simple_dims_invalid() throws Throwable {
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long dims[] = {2, 2};
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H5.H5Screate_simple(5, dims, null);
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}
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@Test(expected = HDF5LibraryException.class)
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public void testH5Screate_simple_dims_exceed() throws Throwable {
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long dims[] = {0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,
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21,22,23,24,25,26,27,28,29,30,31,32,33,35};
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H5.H5Screate_simple(35, dims, null);
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}
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//H5Screate_simple was changed to allow a dim of 0
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// @Ignore(expected = HDF5LibraryException.class)
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// public void testH5Screate_simple_dims_zero() {
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// long dims[] = {0, 0};
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// H5.H5Screate_simple(2, dims, null);
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// }
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@Test
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public void testH5Screate_simple() {
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long sid = HDF5Constants.H5I_INVALID_HID;
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int class_type = -1;
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int rank = 2;
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long dims[] = {5, 5};
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long maxdims[] = {10, 10};
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try {
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sid = H5.H5Screate_simple(rank, dims, maxdims);
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assertTrue("H5.H5Screate_simple", sid > 0);
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class_type = H5.H5Sget_simple_extent_type(sid);
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assertTrue("H5.H5Screate_simple: type", class_type == HDF5Constants.H5S_SIMPLE);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("H5.H5Screate_simple: " + err);
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}
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finally {
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try {H5.H5Sclose(sid);} catch (Exception ex) {}
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}
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}
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@Test
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public void testH5Screate_simple_unlimted() {
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long sid = HDF5Constants.H5I_INVALID_HID;
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int class_type = -1;
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int rank = 2;
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long dims[] = {5, 5};
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long maxdims[] = {HDF5Constants.H5S_UNLIMITED, HDF5Constants.H5S_UNLIMITED};
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try {
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sid = H5.H5Screate_simple(rank, dims, maxdims);
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assertTrue("H5.H5Screate_simple", sid > 0);
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class_type = H5.H5Sget_simple_extent_type(sid);
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assertTrue("H5.H5Screate_simple: type", class_type == HDF5Constants.H5S_SIMPLE);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("H5.H5Screate_simple: " + err);
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}
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finally {
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try {H5.H5Sclose(sid);} catch (Exception ex) {}
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}
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}
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@Test
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public void testH5Screate_simple_unlimted_1d() {
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long sid = HDF5Constants.H5I_INVALID_HID;
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int class_type = -1;
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int rank = 1;
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long dims[] = {5};
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long maxdims[] = {HDF5Constants.H5S_UNLIMITED};
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try {
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sid = H5.H5Screate_simple(rank, dims, maxdims);
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assertTrue("H5.H5Screate_simple", sid > 0);
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class_type = H5.H5Sget_simple_extent_type(sid);
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assertTrue("H5.H5Screate_simple: type", class_type == HDF5Constants.H5S_SIMPLE);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("H5.H5Screate_simple: " + err);
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}
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finally {
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try {H5.H5Sclose(sid);} catch (Exception ex) {}
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}
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}
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@Test
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public void testH5Screate_simple_max_default() {
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long sid = HDF5Constants.H5I_INVALID_HID;
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int rank = 2;
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long dims[] = {5, 5};
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try {
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sid = H5.H5Screate_simple(rank, dims, null);
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assertTrue("H5.H5Screate_simple_max_default", sid > 0);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("H5.H5Screate_simple: " + err);
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}
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finally {
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try {H5.H5Sclose(sid);} catch (Exception ex) {}
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}
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}
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@Test
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public void testH5Screate_simple_extent() {
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long sid = HDF5Constants.H5I_INVALID_HID;
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int rank = 2;
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long dims[] = {5, 5};
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long maxdims[] = {10, 10};
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try {
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sid = H5.H5Screate(HDF5Constants.H5S_SIMPLE);
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assertTrue("H5.H5Screate_simple_extent",sid > 0);
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H5.H5Sset_extent_simple(sid, rank, dims, maxdims);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("H5.H5Screate: " + err);
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}
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finally {
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try {H5.H5Sclose(sid);} catch (Exception ex) {}
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}
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}
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@Test(expected = IllegalArgumentException.class)
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public void testH5Sencode_invalid() throws Throwable {
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H5.H5Sencode(-1);
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}
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@Test(expected = NullPointerException.class)
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public void testH5Sdecode_null() throws Throwable {
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H5.H5Sdecode(null);
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}
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@Test(expected = IllegalArgumentException.class)
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public void testH5Sget_regular_hyperslab_invalid() throws Throwable {
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long q_start[] = new long[2];
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long q_stride[] = new long[2];
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long q_count[] = new long[2];
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long q_block[] = new long[2];
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H5.H5Sget_regular_hyperslab(-1, q_start, q_stride, q_count, q_block);
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}
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@Test(expected = hdf.hdf5lib.exceptions.HDF5FunctionArgumentException.class)
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public void testH5Sselect_copy_invalid() throws Throwable {
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H5.H5Sselect_copy(-1, -1);
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}
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@Test(expected = hdf.hdf5lib.exceptions.HDF5DataspaceInterfaceException.class)
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public void testH5Sselect_shape_same_invalid() throws Throwable {
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H5.H5Sselect_shape_same(-1, -1);
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}
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@Test(expected = IllegalArgumentException.class)
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public void testH5Sselect_adjust_invalid() throws Throwable {
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long offset[][] = {{0,1},{2,4},{5,6}};
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H5.H5Sselect_adjust(-1, offset);
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}
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@Test(expected = IllegalArgumentException.class)
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public void testH5Sselect_adjust_rank_offset() throws Throwable {
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long sid = HDF5Constants.H5I_INVALID_HID;
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long offset[][] = {{0,1},{2,4},{5,6}};
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try {
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sid = H5.H5Screate(HDF5Constants.H5S_SIMPLE);
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assertTrue("H5.H5Screate_simple_extent",sid > 0);
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H5.H5Sselect_adjust(sid, offset);
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}
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finally {
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try {H5.H5Sclose(sid);} catch (Exception ex) {}
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}
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}
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@Test(expected = IllegalArgumentException.class)
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public void testH5Sselect_intersect_block_invalid() throws Throwable {
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long start[] = new long[2];
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long end[] = new long[2];
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H5.H5Sselect_intersect_block(-1, start, end);
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}
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@Test(expected = IllegalArgumentException.class)
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public void testH5Sselect_intersect_block_rank_start() throws Throwable {
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long sid = HDF5Constants.H5I_INVALID_HID;
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long start[] = new long[2];
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long end[] = null;
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try {
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sid = H5.H5Screate(HDF5Constants.H5S_SIMPLE);
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assertTrue("H5.H5Screate_simple_extent",sid > 0);
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H5.H5Sselect_intersect_block(sid, start, end);
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}
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finally {
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try {H5.H5Sclose(sid);} catch (Exception ex) {}
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}
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}
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@Test(expected = IllegalArgumentException.class)
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public void testH5Sselect_intersect_block_rank_end() throws Throwable {
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long sid = HDF5Constants.H5I_INVALID_HID;
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long start[] = null;
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long end[] = new long[2];
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try {
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sid = H5.H5Screate(HDF5Constants.H5S_SIMPLE);
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assertTrue("H5.H5Screate_simple_extent",sid > 0);
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H5.H5Sselect_intersect_block(sid, start, end);
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}
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finally {
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try {H5.H5Sclose(sid);} catch (Exception ex) {}
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}
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}
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@Test(expected = hdf.hdf5lib.exceptions.HDF5DataspaceInterfaceException.class)
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public void testH5Sselect_project_intersection_invalid() throws Throwable {
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H5.H5Sselect_project_intersection(-1, -1, -1);
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}
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@Test(expected = hdf.hdf5lib.exceptions.HDF5FunctionArgumentException.class)
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public void testH5Scombine_hyperslab_invalid() throws Throwable {
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long start[] = new long[2];
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long count[] = new long[2];
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H5.H5Scombine_hyperslab(-1, 0, start, null, count, null);
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}
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@Test(expected = NullPointerException.class)
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public void testH5Scombine_hyperslab_null_start() throws Throwable {
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long sid = HDF5Constants.H5I_INVALID_HID;
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long start[] = null;
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long stride[] = null;
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long count[] = new long[2];
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long block[] = null;
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try {
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sid = H5.H5Screate(HDF5Constants.H5S_SIMPLE);
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assertTrue("H5.H5Screate_simple_extent",sid > 0);
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H5.H5Scombine_hyperslab(sid, 0, start, stride, count, block);
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}
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finally {
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try {H5.H5Sclose(sid);} catch (Exception ex) {}
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}
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}
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@Test(expected = NullPointerException.class)
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public void testH5Scombine_hyperslab_null_count() throws Throwable {
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long sid = HDF5Constants.H5I_INVALID_HID;
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long start[] = new long[2];
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long stride[] = null;
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long count[] = null;
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long block[] = null;
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try {
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sid = H5.H5Screate(HDF5Constants.H5S_SIMPLE);
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assertTrue("H5.H5Screate_simple_extent",sid > 0);
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H5.H5Scombine_hyperslab(sid, 0, start, stride, count, block);
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}
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finally {
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try {H5.H5Sclose(sid);} catch (Exception ex) {}
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}
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}
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@Test(expected = hdf.hdf5lib.exceptions.HDF5FunctionArgumentException.class)
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public void testH5Smodify_select_invalid() throws Throwable {
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H5.H5Smodify_select(-1, 0, -1);
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}
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@Test(expected = hdf.hdf5lib.exceptions.HDF5FunctionArgumentException.class)
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public void testH5Scombine_select_invalid() throws Throwable {
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H5.H5Scombine_select(-1, 0, -1);
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}
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}
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