* Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to maintain binary compatibility. * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625) * Removes gratuitous (double)x.yF casts (#632) * Committing clang-format changes * Removes gratuitous (double)x.yF casts * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Cleans up a const warning left over from previous constification (#633) * Committing clang-format changes * Adds consts to a few global variables * Cleans up a const warning left over from previous constification Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Purges UFAIL from the library (#637) * Committing clang-format changes * Purges UFAIL from the library * H5HL_insert change requested in PR Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Bmr dev hdffv 11223 (#640) * Fixed HDFFV-11223 (CVE-2018-14460) Description - Added checks against buffer size to prevent segfault, in case of data corruption, for sdim->size and sdim->max. - Renamed data files in an existing test to shorten their length as agreed with other developers previously. Platforms tested: Linux/64 (jelly) * Committing clang-format changes * Updated for test files * Updated for HDFFV-11223 Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Committing clang-format changes * Restore "error:" in line 2666. * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)" This reverts commit426b504848. * Snapshot version 1.10 release 8-1. Update version to 1.10.8-2. Squashed commit of the following: commit60734e63feAuthor: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Thu Jun 24 14:20:39 2021 -0500 Hdf5 1 10 Fix tools test (#796) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop * Fix cmake configure path * Update missing release note info. * Update code owners * Add known problem * Use only core library for testing dynamic plugins. CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commitbfb780a444Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Wed Jun 23 14:11:46 2021 -0500 Hdf5 1 10 Release Note (#786) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop * Fix cmake configure path * Update missing release note info. * Update code owners * Add known problem Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit9f50407368Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Tue Jun 22 07:03:26 2021 -0500 Hdf5 1 10 Update missing release note info. (#778) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop * Fix cmake configure path * Update missing release note info. * Update code owners Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit2e80c9cdecAuthor: Dana Robinson <43805+derobins@users.noreply.github.com> Date: Fri Jun 18 06:42:23 2021 -0700 Brings hash table IDs feature from develop/1.12 (#768) * Brings updated tid test from develop * Adds empty H5Iint.c and H5Idbg.c files * H5I renaming to match 1.12/develop * Splits off H5I debug code to H5Idbg.c * Splits internal H5I.c functionality to H5Iint.c * Header cleanup * More renaming cleanup to match develop/1.12 * Adds "save last ID" optimization * Adds uthash.h * Adds hash table IDs from develop/1.12 * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit1e29bcbfe2Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Thu Jun 17 11:21:43 2021 -0500 Hdf5 1 10 Fix cmake configure path (#762) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop * Fix cmake configure path Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit475cdaf431Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Wed Jun 16 15:45:58 2021 -0500 Hdf5 1 10 merge warnings changes (#756) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commite25980e7f3Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Tue Jun 8 14:37:13 2021 -0500 Hdf5 1 10 merges of CMake changes (#738) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit061b23ac00Author: Larry Knox <lrknox@hdfgroup.org> Date: Thu Jun 3 16:07:23 2021 -0500 Partial merge issue #642 develop branch PRs to Hdf5 1 10 (#718) * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to maintain binary compatibility. * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625) * Removes gratuitous (double)x.yF casts (#632) * Committing clang-format changes * Removes gratuitous (double)x.yF casts * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Cleans up a const warning left over from previous constification (#633) * Committing clang-format changes * Adds consts to a few global variables * Cleans up a const warning left over from previous constification Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Purges UFAIL from the library (#637) * Committing clang-format changes * Purges UFAIL from the library * H5HL_insert change requested in PR Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Bmr dev hdffv 11223 (#640) * Fixed HDFFV-11223 (CVE-2018-14460) Description - Added checks against buffer size to prevent segfault, in case of data corruption, for sdim->size and sdim->max. - Renamed data files in an existing test to shorten their length as agreed with other developers previously. Platforms tested: Linux/64 (jelly) * Committing clang-format changes * Updated for test files * Updated for HDFFV-11223 Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Committing clang-format changes * Restore "error:" in line 2666. * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)" This reverts commit426b504848. Co-authored-by: jhendersonHDF <jhenderson@hdfgroup.org> Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: bmribler <39579120+bmribler@users.noreply.github.com> * (fix) Segmentation fault when using a compound type. (#143) * (fix) Segmentation fault when using a compound type. In the case when a compounded attribute is written to dataset followed by writing the data with a data transform function to the dataset will result in a segmentation fault. It turns out the data is classified as compounded while it is not. Now, the state is always reset first to not compounded followed by the existing check if the variable is compounded. * (fix) Removed undesired comment lines. * (fix) Segmentation fault when using a compound type: added test. * (fix) Added the missing cmpd_transform.c file to MANIFEST. * (fix) cmpd_dtransform test: autotools and source header. Added the cmp_dtransform test to the autotools configuration and updated the HDF Group copyright header. Co-authored-by: Jan-Willem Blokland <Jan-Willem.Blokland@Shell.com> * (fix) H5Z_xform_create function and scientific notation (#144) * (fix) H5Z_xform_create function and scientific notation Implemented a more sophisticated check to support scientific notation in the expression of the H5Zset_data_transform function. * (fix) H5Z_xform_create and scientific notation: Added test. Added a test to demonstrate that the parsing of expression which includes scientific notation works correctly. Improved inline comment. Co-authored-by: Jan-Willem Blokland <Jan-Willem.Blokland@Shell.com> * Adds const to a few global variables (#623) * Committing clang-format changes * Adds consts to a few global variables Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Made private my_yyinput function static (#618) This prevents it being exported as a public symbol. * Reduces overly-pedantic casting in the public headers (#644) * Committing clang-format changes * Fixes overly pedantic casting in public headers Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Use internal version of H5Eprint2 to avoid possible stack overflow (#661) * Fixes for a couple of trivial warnings (#676) * Committing clang-format changes * Trivial warning fixes: * Removes an unused done target in H5Tbit.c * Add (void) to quiet "ignored return value" warnings in the generators (which generally ignore errors) Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Removes alternative function enter/leave macro scheme (#678) * Committing clang-format changes * Converted BEGIN_FUNC, etc. macros to FUNC_ENTER * Rips out the BEGIN_FUNC, etc. macros * Removes 'end if', etc. comments from H5HL package * Committing clang-format changes * Fixes an H5EA iterate issue * Fixes an issue in the H5FA iterator code * Further cleanup in bin/trace after macro removal * Iterator changes in H5EA and H5FA Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Various CMake changes (#679) * Committing clang-format changes * Several CMake updates: * Removes unused HDF5_ENABLE_HSIZET * Switches TEST_SHELL_SCRIPTS to ON * Sets SH_PROGRAM to bash instead of sh * Set default build type back to RelWithDebInfo Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Revert "Removes alternative function enter/leave macro scheme (#678)" This reverts commitedddb11b79. * err_compat test cleanup (#681) * Committing clang-format changes * Cleans up err_compat test and output * Formatted source Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Sets the memory alloc sanity check option to disabled in autotools (#686) * Revert "Sets the memory alloc sanity check option to disabled in autotools (#686)" This reverts commit652ffca586. (Only for release branch). * Removes alternative function enter/leave macro scheme (#678) * Committing clang-format changes * Converted BEGIN_FUNC, etc. macros to FUNC_ENTER * Rips out the BEGIN_FUNC, etc. macros * Removes 'end if', etc. comments from H5HL package * Committing clang-format changes * Fixes an H5EA iterate issue * Fixes an issue in the H5FA iterator code * Further cleanup in bin/trace after macro removal * Iterator changes in H5EA and H5FA Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Committing clang-format changes * Squashed commit of the following: commite2578640feAuthor: Larry Knox <lrknox@hdfgroup.org> Date: Fri Jul 16 10:57:51 2021 -0500 Merge issue 839 changes to hdf5 1 10 (#841) * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to maintain binary compatibility. * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625) * Removes gratuitous (double)x.yF casts (#632) * Committing clang-format changes * Removes gratuitous (double)x.yF casts * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Cleans up a const warning left over from previous constification (#633) * Committing clang-format changes * Adds consts to a few global variables * Cleans up a const warning left over from previous constification Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Purges UFAIL from the library (#637) * Committing clang-format changes * Purges UFAIL from the library * H5HL_insert change requested in PR Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Bmr dev hdffv 11223 (#640) * Fixed HDFFV-11223 (CVE-2018-14460) Description - Added checks against buffer size to prevent segfault, in case of data corruption, for sdim->size and sdim->max. - Renamed data files in an existing test to shorten their length as agreed with other developers previously. Platforms tested: Linux/64 (jelly) * Committing clang-format changes * Updated for test files * Updated for HDFFV-11223 Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Committing clang-format changes * Restore "error:" in line 2666. * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)" This reverts commit426b504848. * Snapshot version 1.10 release 8-1. Update version to 1.10.8-2. Squashed commit of the following: commit60734e63feAuthor: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Thu Jun 24 14:20:39 2021 -0500 Hdf5 1 10 Fix tools test (#796) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop * Fix cmake configure path * Update missing release note info. * Update code owners * Add known problem * Use only core library for testing dynamic plugins. CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commitbfb780a444Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Wed Jun 23 14:11:46 2021 -0500 Hdf5 1 10 Release Note (#786) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop * Fix cmake configure path * Update missing release note info. * Update code owners * Add known problem Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit9f50407368Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Tue Jun 22 07:03:26 2021 -0500 Hdf5 1 10 Update missing release note info. (#778) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop * Fix cmake configure path * Update missing release note info. * Update code owners Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit2e80c9cdecAuthor: Dana Robinson <43805+derobins@users.noreply.github.com> Date: Fri Jun 18 06:42:23 2021 -0700 Brings hash table IDs feature from develop/1.12 (#768) * Brings updated tid test from develop * Adds empty H5Iint.c and H5Idbg.c files * H5I renaming to match 1.12/develop * Splits off H5I debug code to H5Idbg.c * Splits internal H5I.c functionality to H5Iint.c * Header cleanup * More renaming cleanup to match develop/1.12 * Adds "save last ID" optimization * Adds uthash.h * Adds hash table IDs from develop/1.12 * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit1e29bcbfe2Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Thu Jun 17 11:21:43 2021 -0500 Hdf5 1 10 Fix cmake configure path (#762) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop * Fix cmake configure path Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit475cdaf431Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Wed Jun 16 15:45:58 2021 -0500 Hdf5 1 10 merge warnings changes (#756) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commite25980e7f3Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Tue Jun 8 14:37:13 2021 -0500 Hdf5 1 10 merges of CMake changes (#738) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit061b23ac00Author: Larry Knox <lrknox@hdfgroup.org> Date: Thu Jun 3 16:07:23 2021 -0500 Partial merge issue #642 develop branch PRs to Hdf5 1 10 (#718) * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to maintain binary compatibility. * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625) * Removes gratuitous (double)x.yF casts (#632) * Committing clang-format changes * Removes gratuitous (double)x.yF casts * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Cleans up a const warning left over from previous constification (#633) * Committing clang-format changes * Adds consts to a few global variables * Cleans up a const warning left over from previous constification Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Purges UFAIL from the library (#637) * Committing clang-format changes * Purges UFAIL from the library * H5HL_insert change requested in PR Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Bmr dev hdffv 11223 (#640) * Fixed HDFFV-11223 (CVE-2018-14460) Description - Added checks against buffer size to prevent segfault, in case of data corruption, for sdim->size and sdim->max. - Renamed data files in an existing test to shorten their length as agreed with other developers previously. Platforms tested: Linux/64 (jelly) * Committing clang-format changes * Updated for test files * Updated for HDFFV-11223 Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Committing clang-format changes * Restore "error:" in line 2666. * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)" This reverts commit426b504848. Co-authored-by: jhendersonHDF <jhenderson@hdfgroup.org> Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: bmribler <39579120+bmribler@users.noreply.github.com> * (fix) Segmentation fault when using a compound type. (#143) * (fix) Segmentation fault when using a compound type. In the case when a compounded attribute is written to dataset followed by writing the data with a data transform function to the dataset will result in a segmentation fault. It turns out the data is classified as compounded while it is not. Now, the state is always reset first to not compounded followed by the existing check if the variable is compounded. * (fix) Removed undesired comment lines. * (fix) Segmentation fault when using a compound type: added test. * (fix) Added the missing cmpd_transform.c file to MANIFEST. * (fix) cmpd_dtransform test: autotools and source header. Added the cmp_dtransform test to the autotools configuration and updated the HDF Group copyright header. Co-authored-by: Jan-Willem Blokland <Jan-Willem.Blokland@Shell.com> * (fix) H5Z_xform_create function and scientific notation (#144) * (fix) H5Z_xform_create function and scientific notation Implemented a more sophisticated check to support scientific notation in the expression of the H5Zset_data_transform function. * (fix) H5Z_xform_create and scientific notation: Added test. Added a test to demonstrate that the parsing of expression which includes scientific notation works correctly. Improved inline comment. Co-authored-by: Jan-Willem Blokland <Jan-Willem.Blokland@Shell.com> * Adds const to a few global variables (#623) * Committing clang-format changes * Adds consts to a few global variables Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Made private my_yyinput function static (#618) This prevents it being exported as a public symbol. * Reduces overly-pedantic casting in the public headers (#644) * Committing clang-format changes * Fixes overly pedantic casting in public headers Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Use internal version of H5Eprint2 to avoid possible stack overflow (#661) * Fixes for a couple of trivial warnings (#676) * Committing clang-format changes * Trivial warning fixes: * Removes an unused done target in H5Tbit.c * Add (void) to quiet "ignored return value" warnings in the generators (which generally ignore errors) Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Removes alternative function enter/leave macro scheme (#678) * Committing clang-format changes * Converted BEGIN_FUNC, etc. macros to FUNC_ENTER * Rips out the BEGIN_FUNC, etc. macros * Removes 'end if', etc. comments from H5HL package * Committing clang-format changes * Fixes an H5EA iterate issue * Fixes an issue in the H5FA iterator code * Further cleanup in bin/trace after macro removal * Iterator changes in H5EA and H5FA Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Various CMake changes (#679) * Committing clang-format changes * Several CMake updates: * Removes unused HDF5_ENABLE_HSIZET * Switches TEST_SHELL_SCRIPTS to ON * Sets SH_PROGRAM to bash instead of sh * Set default build type back to RelWithDebInfo Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Revert "Removes alternative function enter/leave macro scheme (#678)" This reverts commitedddb11b79. * err_compat test cleanup (#681) * Committing clang-format changes * Cleans up err_compat test and output * Formatted source Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Sets the memory alloc sanity check option to disabled in autotools (#686) * Revert "Sets the memory alloc sanity check option to disabled in autotools (#686)" This reverts commit652ffca586. (Only for release branch). * Removes alternative function enter/leave macro scheme (#678) * Committing clang-format changes * Converted BEGIN_FUNC, etc. macros to FUNC_ENTER * Rips out the BEGIN_FUNC, etc. macros * Removes 'end if', etc. comments from H5HL package * Committing clang-format changes * Fixes an H5EA iterate issue * Fixes an issue in the H5FA iterator code * Further cleanup in bin/trace after macro removal * Iterator changes in H5EA and H5FA Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Committing clang-format changes Co-authored-by: jhendersonHDF <jhenderson@hdfgroup.org> Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: bmribler <39579120+bmribler@users.noreply.github.com> Co-authored-by: Jan-Willem Blokland <J.W.S.Blokland@XS4All.nl> Co-authored-by: Jan-Willem Blokland <Jan-Willem.Blokland@Shell.com> Co-authored-by: Sean McBride <sean@rogue-research.com> commit14794490ecAuthor: Larry Knox <lrknox@hdfgroup.org> Date: Wed Jul 14 13:50:26 2021 -0500 Update version to 1.10.8-2 after snapshot release of 1.10.8-1 (#838) * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to maintain binary compatibility. * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625) * Removes gratuitous (double)x.yF casts (#632) * Committing clang-format changes * Removes gratuitous (double)x.yF casts * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Cleans up a const warning left over from previous constification (#633) * Committing clang-format changes * Adds consts to a few global variables * Cleans up a const warning left over from previous constification Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Purges UFAIL from the library (#637) * Committing clang-format changes * Purges UFAIL from the library * H5HL_insert change requested in PR Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Bmr dev hdffv 11223 (#640) * Fixed HDFFV-11223 (CVE-2018-14460) Description - Added checks against buffer size to prevent segfault, in case of data corruption, for sdim->size and sdim->max. - Renamed data files in an existing test to shorten their length as agreed with other developers previously. Platforms tested: Linux/64 (jelly) * Committing clang-format changes * Updated for test files * Updated for HDFFV-11223 Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Committing clang-format changes * Restore "error:" in line 2666. * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)" This reverts commit426b504848. * Snapshot version 1.10 release 8-1. Update version to 1.10.8-2. Squashed commit of the following: commit60734e63feAuthor: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Thu Jun 24 14:20:39 2021 -0500 Hdf5 1 10 Fix tools test (#796) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop * Fix cmake configure path * Update missing release note info. * Update code owners * Add known problem * Use only core library for testing dynamic plugins. CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commitbfb780a444Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Wed Jun 23 14:11:46 2021 -0500 Hdf5 1 10 Release Note (#786) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop * Fix cmake configure path * Update missing release note info. * Update code owners * Add known problem Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit9f50407368Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Tue Jun 22 07:03:26 2021 -0500 Hdf5 1 10 Update missing release note info. (#778) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop * Fix cmake configure path * Update missing release note info. * Update code owners Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit2e80c9cdecAuthor: Dana Robinson <43805+derobins@users.noreply.github.com> Date: Fri Jun 18 06:42:23 2021 -0700 Brings hash table IDs feature from develop/1.12 (#768) * Brings updated tid test from develop * Adds empty H5Iint.c and H5Idbg.c files * H5I renaming to match 1.12/develop * Splits off H5I debug code to H5Idbg.c * Splits internal H5I.c functionality to H5Iint.c * Header cleanup * More renaming cleanup to match develop/1.12 * Adds "save last ID" optimization * Adds uthash.h * Adds hash table IDs from develop/1.12 * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit1e29bcbfe2Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Thu Jun 17 11:21:43 2021 -0500 Hdf5 1 10 Fix cmake configure path (#762) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop * Fix cmake configure path Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit475cdaf431Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Wed Jun 16 15:45:58 2021 -0500 Hdf5 1 10 merge warnings changes (#756) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commite25980e7f3Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Tue Jun 8 14:37:13 2021 -0500 Hdf5 1 10 merges of CMake changes (#738) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit061b23ac00Author: Larry Knox <lrknox@hdfgroup.org> Date: Thu Jun 3 16:07:23 2021 -0500 Partial merge issue #642 develop branch PRs to Hdf5 1 10 (#718) * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to maintain binary compatibility. * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625) * Removes gratuitous (double)x.yF casts (#632) * Committing clang-format changes * Removes gratuitous (double)x.yF casts * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Cleans up a const warning left over from previous constification (#633) * Committing clang-format changes * Adds consts to a few global variables * Cleans up a const warning left over from previous constification Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Purges UFAIL from the library (#637) * Committing clang-format changes * Purges UFAIL from the library * H5HL_insert change requested in PR Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Bmr dev hdffv 11223 (#640) * Fixed HDFFV-11223 (CVE-2018-14460) Description - Added checks against buffer size to prevent segfault, in case of data corruption, for sdim->size and sdim->max. - Renamed data files in an existing test to shorten their length as agreed with other developers previously. Platforms tested: Linux/64 (jelly) * Committing clang-format changes * Updated for test files * Updated for HDFFV-11223 Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Committing clang-format changes * Restore "error:" in line 2666. * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)" This reverts commit426b504848. Co-authored-by: jhendersonHDF <jhenderson@hdfgroup.org> Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: bmribler <39579120+bmribler@users.noreply.github.com> Co-authored-by: jhendersonHDF <jhenderson@hdfgroup.org> Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: bmribler <39579120+bmribler@users.noreply.github.com> * Revert references to SIZE_MAX to ((size_t)(-1)) in C header defines used by c++ code that fail on centos7 when -std=c++11 is not set. * Fix H5FD_mpio_Debug="rw" can report MPI_count instead of bytes (#699) * fixed missed closing of a dataset * fixed missed closing of a dataset * fixed typo in error return * Committing clang-format changes * minor edits * code format * Committing clang-format changes * code format * minor edit * switched from using MPI_count, to actual bytes written for H5FD_mpio_debug rw debugging * Committing clang-format changes * changed size_i in printf to reflect the I/O. * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Removes pre-C99 build and header cruft (#700) * Committing clang-format changes * Removes pre-C99 build and header cruft * Assumes ANSI C headers exist * Assumes stdbool.h, stdint.h, and inttypes.h are present * Assumes the C++ compiler can handle stdint.h * Removes all work-arounds for missing functionality, especially stdbool.h * Formats source Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Clean up type size checks in configure.ac (#702) * Removes some DEC Alpha cruft from H5detect and H5private.h (#708) * Cleans up hsize_t and haddr_t size guessing (#709) * Cleans up definitions of haddr_t and hsize_t + cruft removal * Formatted source * Revert "Cleans up hsize_t and haddr_t size guessing (#709)" This reverts commitbe6ad9a7a0. * Updates bin/trace script to correctly wrap H5TRACE macros near clang-format column limit (#719) * Removes clang-format comments from H5O.c call * Fixes bin/trace to correctly wrap lines near the clang-format limit * Removed unused variable from bin/trace Conflicts: bin/trace src/H5O.c * Fixes a segfault when H5Pset_mdc_log_options is called multiple times on a fapl (#601) * Committing clang-format changes * Fixes a segfault when H5Pset_mdc_log_options() is called multiple times An internal string is incorrectly freed when the API call is invoked multiple times on a property list, which will usually cause a segfault to occur. On the first call the log location is NULL so the problem doesn't occur. Fixes HDFFV-11239 * Fixes typos Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Conflicts: release_docs/RELEASE.txt * Fix for a segfault when H5Pset_fapl_log is passed an invalid fapl ID (#607) * Committing clang-format changes * Fixes an issue where H5Pset_fapl_log sefaults when passed an invalid fapl ID This was due to a pointer-containing struct being memset after the first internal API call. If the first call failed, the error condition would check if the pointer was not NULL and then attempt to free it if not. This would lead to the freeing of a wild pointer if an invalid fapl ID were passed in. This was fixed by reordering the memset and adding a test to ensure the problem stays fixed. Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Conflicts: release_docs/RELEASE.txt * Fixes crashes when size_hint > UINT32_MAX is passed to H5Gcreate1 (#611) * Committing clang-format changes * Fixes incorrect size_hint handling in H5Gcreate1 * Updates the size hint type for group creation * Updates the RELEASE.txt note * Revert "Updates the RELEASE.txt note" This reverts commit3df386acca. * Reverts previous behavior to use a uint32_t struct field * Updates RELEASE.txt Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Conflicts: src/H5Gdeprec.c * Adds __STDC_FORMAT_MACROS before including inttypes.h w/ C++ (#726) * Adds __STDC_FORMAT_MACROS before including inttypes.h w/ C++ Allows C++ library to be built on older versions of gcc. * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Conflicts: src/H5public.h * Remove conflicts from RELEASE.txt * Always include inttypes.h * Moves H5PacketTable default ctor inside source file (#731) * Remove private H5_GCC_DIAG_OFF/ON from standalone program (#734) * Fixes C++ warnings when passing hsize_t values to printf in test code (#745) * Squashed commit of the following: commit1aa2c3421bAuthor: Larry Knox <lrknox@hdfgroup.org> Date: Sun Jul 25 21:20:20 2021 -0500 Merge issue 839 develop PRs to hdf5 1 10 - round 2 (#852) * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to maintain binary compatibility. * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625) * Removes gratuitous (double)x.yF casts (#632) * Committing clang-format changes * Removes gratuitous (double)x.yF casts * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Cleans up a const warning left over from previous constification (#633) * Committing clang-format changes * Adds consts to a few global variables * Cleans up a const warning left over from previous constification Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Purges UFAIL from the library (#637) * Committing clang-format changes * Purges UFAIL from the library * H5HL_insert change requested in PR Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Bmr dev hdffv 11223 (#640) * Fixed HDFFV-11223 (CVE-2018-14460) Description - Added checks against buffer size to prevent segfault, in case of data corruption, for sdim->size and sdim->max. - Renamed data files in an existing test to shorten their length as agreed with other developers previously. Platforms tested: Linux/64 (jelly) * Committing clang-format changes * Updated for test files * Updated for HDFFV-11223 Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Committing clang-format changes * Restore "error:" in line 2666. * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)" This reverts commit426b504848. * Snapshot version 1.10 release 8-1. Update version to 1.10.8-2. Squashed commit of the following: commit60734e63feAuthor: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Thu Jun 24 14:20:39 2021 -0500 Hdf5 1 10 Fix tools test (#796) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop * Fix cmake configure path * Update missing release note info. * Update code owners * Add known problem * Use only core library for testing dynamic plugins. CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commitbfb780a444Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Wed Jun 23 14:11:46 2021 -0500 Hdf5 1 10 Release Note (#786) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop * Fix cmake configure path * Update missing release note info. * Update code owners * Add known problem Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit9f50407368Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Tue Jun 22 07:03:26 2021 -0500 Hdf5 1 10 Update missing release note info. (#778) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop * Fix cmake configure path * Update missing release note info. * Update code owners Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit2e80c9cdecAuthor: Dana Robinson <43805+derobins@users.noreply.github.com> Date: Fri Jun 18 06:42:23 2021 -0700 Brings hash table IDs feature from develop/1.12 (#768) * Brings updated tid test from develop * Adds empty H5Iint.c and H5Idbg.c files * H5I renaming to match 1.12/develop * Splits off H5I debug code to H5Idbg.c * Splits internal H5I.c functionality to H5Iint.c * Header cleanup * More renaming cleanup to match develop/1.12 * Adds "save last ID" optimization * Adds uthash.h * Adds hash table IDs from develop/1.12 * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit1e29bcbfe2Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Thu Jun 17 11:21:43 2021 -0500 Hdf5 1 10 Fix cmake configure path (#762) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop * Fix cmake configure path Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit475cdaf431Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Wed Jun 16 15:45:58 2021 -0500 Hdf5 1 10 merge warnings changes (#756) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commite25980e7f3Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Tue Jun 8 14:37:13 2021 -0500 Hdf5 1 10 merges of CMake changes (#738) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit061b23ac00Author: Larry Knox <lrknox@hdfgroup.org> Date: Thu Jun 3 16:07:23 2021 -0500 Partial merge issue #642 develop branch PRs to Hdf5 1 10 (#718) * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to maintain binary compatibility. * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625) * Removes gratuitous (double)x.yF casts (#632) * Committing clang-format changes * Removes gratuitous (double)x.yF casts * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Cleans up a const warning left over from previous constification (#633) * Committing clang-format changes * Adds consts to a few global variables * Cleans up a const warning left over from previous constification Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Purges UFAIL from the library (#637) * Committing clang-format changes * Purges UFAIL from the library * H5HL_insert change requested in PR Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Bmr dev hdffv 11223 (#640) * Fixed HDFFV-11223 (CVE-2018-14460) Description - Added checks against buffer size to prevent segfault, in case of data corruption, for sdim->size and sdim->max. - Renamed data files in an existing test to shorten their length as agreed with other developers previously. Platforms tested: Linux/64 (jelly) * Committing clang-format changes * Updated for test files * Updated for HDFFV-11223 Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Committing clang-format changes * Restore "error:" in line 2666. * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)" This reverts commit426b504848. Co-authored-by: jhendersonHDF <jhenderson@hdfgroup.org> Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: bmribler <39579120+bmribler@users.noreply.github.com> * (fix) Segmentation fault when using a compound type. (#143) * (fix) Segmentation fault when using a compound type. In the case when a compounded attribute is written to dataset followed by writing the data with a data transform function to the dataset will result in a segmentation fault. It turns out the data is classified as compounded while it is not. Now, the state is always reset first to not compounded followed by the existing check if the variable is compounded. * (fix) Removed undesired comment lines. * (fix) Segmentation fault when using a compound type: added test. * (fix) Added the missing cmpd_transform.c file to MANIFEST. * (fix) cmpd_dtransform test: autotools and source header. Added the cmp_dtransform test to the autotools configuration and updated the HDF Group copyright header. Co-authored-by: Jan-Willem Blokland <Jan-Willem.Blokland@Shell.com> * (fix) H5Z_xform_create function and scientific notation (#144) * (fix) H5Z_xform_create function and scientific notation Implemented a more sophisticated check to support scientific notation in the expression of the H5Zset_data_transform function. * (fix) H5Z_xform_create and scientific notation: Added test. Added a test to demonstrate that the parsing of expression which includes scientific notation works correctly. Improved inline comment. Co-authored-by: Jan-Willem Blokland <Jan-Willem.Blokland@Shell.com> * Adds const to a few global variables (#623) * Committing clang-format changes * Adds consts to a few global variables Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Made private my_yyinput function static (#618) This prevents it being exported as a public symbol. * Reduces overly-pedantic casting in the public headers (#644) * Committing clang-format changes * Fixes overly pedantic casting in public headers Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Use internal version of H5Eprint2 to avoid possible stack overflow (#661) * Fixes for a couple of trivial warnings (#676) * Committing clang-format changes * Trivial warning fixes: * Removes an unused done target in H5Tbit.c * Add (void) to quiet "ignored return value" warnings in the generators (which generally ignore errors) Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Removes alternative function enter/leave macro scheme (#678) * Committing clang-format changes * Converted BEGIN_FUNC, etc. macros to FUNC_ENTER * Rips out the BEGIN_FUNC, etc. macros * Removes 'end if', etc. comments from H5HL package * Committing clang-format changes * Fixes an H5EA iterate issue * Fixes an issue in the H5FA iterator code * Further cleanup in bin/trace after macro removal * Iterator changes in H5EA and H5FA Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Various CMake changes (#679) * Committing clang-format changes * Several CMake updates: * Removes unused HDF5_ENABLE_HSIZET * Switches TEST_SHELL_SCRIPTS to ON * Sets SH_PROGRAM to bash instead of sh * Set default build type back to RelWithDebInfo Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Revert "Removes alternative function enter/leave macro scheme (#678)" This reverts commitedddb11b79. * err_compat test cleanup (#681) * Committing clang-format changes * Cleans up err_compat test and output * Formatted source Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Sets the memory alloc sanity check option to disabled in autotools (#686) * Revert "Sets the memory alloc sanity check option to disabled in autotools (#686)" This reverts commit652ffca586. (Only for release branch). * Removes alternative function enter/leave macro scheme (#678) * Committing clang-format changes * Converted BEGIN_FUNC, etc. macros to FUNC_ENTER * Rips out the BEGIN_FUNC, etc. macros * Removes 'end if', etc. comments from H5HL package * Committing clang-format changes * Fixes an H5EA iterate issue * Fixes an issue in the H5FA iterator code * Further cleanup in bin/trace after macro removal * Iterator changes in H5EA and H5FA Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Committing clang-format changes * Squashed commit of the following: commite2578640feAuthor: Larry Knox <lrknox@hdfgroup.org> Date: Fri Jul 16 10:57:51 2021 -0500 Merge issue 839 changes to hdf5 1 10 (#841) * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to maintain binary compatibility. * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625) * Removes gratuitous (double)x.yF casts (#632) * Committing clang-format changes * Removes gratuitous (double)x.yF casts * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Cleans up a const warning left over from previous constification (#633) * Committing clang-format changes * Adds consts to a few global variables * Cleans up a const warning left over from previous constification Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Purges UFAIL from the library (#637) * Committing clang-format changes * Purges UFAIL from the library * H5HL_insert change requested in PR Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Bmr dev hdffv 11223 (#640) * Fixed HDFFV-11223 (CVE-2018-14460) Description - Added checks against buffer size to prevent segfault, in case of data corruption, for sdim->size and sdim->max. - Renamed data files in an existing test to shorten their length as agreed with other developers previously. Platforms tested: Linux/64 (jelly) * Committing clang-format changes * Updated for test files * Updated for HDFFV-11223 Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Committing clang-format changes * Restore "error:" in line 2666. * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)" This reverts commit426b504848. * Snapshot version 1.10 release 8-1. Update version to 1.10.8-2. Squashed commit of the following: commit60734e63feAuthor: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Thu Jun 24 14:20:39 2021 -0500 Hdf5 1 10 Fix tools test (#796) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop * Fix cmake configure path * Update missing release note info. * Update code owners * Add known problem * Use only core library for testing dynamic plugins. CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commitbfb780a444Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Wed Jun 23 14:11:46 2021 -0500 Hdf5 1 10 Release Note (#786) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop * Fix cmake configure path * Update missing release note info. * Update code owners * Add known problem Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit9f50407368Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Tue Jun 22 07:03:26 2021 -0500 Hdf5 1 10 Update missing release note info. (#778) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop * Fix cmake configure path * Update missing release note info. * Update code owners Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit2e80c9cdecAuthor: Dana Robinson <43805+derobins@users.noreply.github.com> Date: Fri Jun 18 06:42:23 2021 -0700 Brings hash table IDs feature from develop/1.12 (#768) * Brings updated tid test from develop * Adds empty H5Iint.c and H5Idbg.c files * H5I renaming to match 1.12/develop * Splits off H5I debug code to H5Idbg.c * Splits internal H5I.c functionality to H5Iint.c * Header cleanup * More renaming cleanup to match develop/1.12 * Adds "save last ID" optimization * Adds uthash.h * Adds hash table IDs from develop/1.12 * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit1e29bcbfe2Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Thu Jun 17 11:21:43 2021 -0500 Hdf5 1 10 Fix cmake configure path (#762) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop * Fix cmake configure path Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit475cdaf431Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Wed Jun 16 15:45:58 2021 -0500 Hdf5 1 10 merge warnings changes (#756) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args * Merge warnings files fixes from develop Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commite25980e7f3Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com> Date: Tue Jun 8 14:37:13 2021 -0500 Hdf5 1 10 merges of CMake changes (#738) * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * doxygen changes merged from develop * Committing clang-format changes * Merge CMake fortran ninja changes from dev * Enable fortran to gcc yaml * Refactor Fortran CMake config tests and CMake test args Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> commit061b23ac00Author: Larry Knox <lrknox@hdfgroup.org> Date: Thu Jun 3 16:07:23 2021 -0500 Partial merge issue #642 develop branch PRs to Hdf5 1 10 (#718) * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to maintain binary compatibility. * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625) * Removes gratuitous (double)x.yF casts (#632) * Committing clang-format changes * Removes gratuitous (double)x.yF casts * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Cleans up a const warning left over from previous constification (#633) * Committing clang-format changes * Adds consts to a few global variables * Cleans up a const warning left over from previous constification Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Purges UFAIL from the library (#637) * Committing clang-format changes * Purges UFAIL from the library * H5HL_insert change requested in PR Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Bmr dev hdffv 11223 (#640) * Fixed HDFFV-11223 (CVE-2018-14460) Description - Added checks against buffer size to prevent segfault, in case of data corruption, for sdim->size and sdim->max. - Renamed data files in an existing test to shorten their length as agreed with other developers previously. Platforms tested: Linux/64 (jelly) * Committing clang-format changes * Updated for test files * Updated for HDFFV-11223 Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Committing clang-format changes * Restore "error:" in line 2666. * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)" This reverts commit426b504848. Co-authored-by: jhendersonHDF <jhenderson@hdfgroup.org> Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: bmribler <39579120+bmribler@users.noreply.github.com> * (fix) Segmentation fault when using a compound type. (#143) * (fix) Segmentation fault when using a compound type. In the case when a compounded attribute is written to dataset followed by writing the data with a data transform function to the dataset will result in a segmentation fault. It turns out the data is classified as compounded while it is not. Now, the state is always reset first to not compounded followed by the existing check if the variable is compounded. * (fix) Removed undesired comment lines. * (fix) Segmentation fault when using a compound type: added test. * (fix) Added the missing cmpd_transform.c file to MANIFEST. * (fix) cmpd_dtransform test: autotools and source header. Added the cmp_dtransform test to the autotools configuration and updated the HDF Group copyright header. Co-authored-by: Jan-Willem Blokland <Jan-Willem.Blokland@Shell.com> * (fix) H5Z_xform_create function and scientific notation (#144) * (fix) H5Z_xform_create function and scientific notation Implemented a more sophisticated check to support scientific notation in the expression of the H5Zset_data_transform function. * (fix) H5Z_xform_create and scientific notation: Added test. Added a test to demonstrate that the parsing of expression which includes scientific notation works correctly. Improved inline comment. Co-authored-by: Jan-Willem Blokland <Jan-Willem.Blokland@Shell.com> * Adds const to a few global variables (#623) * Committing clang-format changes * Adds consts to a few global variables Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Made private my_yyinput function static (#618) This prevents it being exported as a public symbol. * Reduces overly-pedantic casting in the public headers (#644) * Committing clang-format changes * Fixes overly pedantic casting in public headers Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Use internal version of H5Eprint2 to avoid possible stack overflow (#661) * Fixes for a couple of trivial warnings (#676) * Committing clang-format changes * Trivial warning fixes: * Removes an unused done target in H5Tbit.c * Add (void) to quiet "ignored return value" warnings in the generators (which generally ignore errors) Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Removes alternative function enter/leave macro scheme (#678) * Committing clang-format changes * Converted BEGIN_FUNC, etc. macros to FUNC_ENTER * Rips out the BEGIN_FUNC, etc. macros * Removes 'end if', etc. comments from H5HL package * Committing clang-format changes * Fixes an H5EA iterate issue * Fixes an issue in the H5FA iterator code * Further cleanup in bin/trace after macro removal * Iterator changes in H5EA and H5FA Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Various CMake changes (#679) * Committing clang-format changes * Several CMake updates: * Removes unused HDF5_ENABLE_HSIZET * Switches TEST_SHELL_SCRIPTS to ON * Sets SH_PROGRAM to bash instead of sh * Set default build type back to RelWithDebInfo Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Revert "Removes alternative function enter/leave macro scheme (#678)" This reverts commitedddb11b79. * err_compat test cleanup (#681) * Committing clang-format changes * Cleans up err_compat test and output * Formatted source Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Sets the memory alloc sanity check option to disabled in autotools (#686) * Revert "Sets the memory alloc sanity check option to disabled in autotools (#686)" This reverts commit652ffca586. (Only for release branch). * Removes alternative function enter/leave macro scheme (#678) * Committing clang-for… * Normalization of H5_nanosleep() with VFD SWMR branch (#746) * Normalization of H5_nanosleep() with VFD SWMR branch * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Fixes some H5SL include statements (#758) * Fixes an array issue flagged by PGI in a C++ test (#763) * Fixes non-C99 format strings in tarray test code (#766) * Removes checks and work-arounds for strtoll and strtoull (#769) * Removes checks and work-arounds for strtoll and strtoull * Removes CMake checks for strtoll and strtoull * Removes checks for (v)snprintf, which are C99 (#772) * Removes outdated checks for ways inline might be defined (#781) These are obsolete now that we require C99. * Removes checks for system(), which is C89/90 (#782) * Cleans up some POSIX header bits in H5private.h (#783) * Further simplifies Autotools type size checks (#789) Also fixes an issue where clock_gettime and difftime are not detected due to earlier simplifications of this code. * Removes ancient Autotools cruft (#790) * Normalization of CMake H5pubconf.h with Autotools (#791) Mostly just moving things around and changing the comments to keep the delta small. The only symbol change is that for curl/curl.h which I changed to H5_HAVE_CURL_CURL_H to match the Autotools. This symbol is not used in the library and is just an artifact of the checks. * Update initialization of table_id in PacketTable Null constructor for non c++11 clang compiler. Co-authored-by: jhendersonHDF <jhenderson@hdfgroup.org> Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: bmribler <39579120+bmribler@users.noreply.github.com> Co-authored-by: Jan-Willem Blokland <J.W.S.Blokland@XS4All.nl> Co-authored-by: Jan-Willem Blokland <Jan-Willem.Blokland@Shell.com> Co-authored-by: Sean McBride <sean@rogue-research.com> Co-authored-by: Scot Breitenfeld <brtnfld@hdfgroup.org> Co-authored-by: Allen Byrne <50328838+byrnHDF@users.noreply.github.com>
750 lines
27 KiB
C
750 lines
27 KiB
C
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
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* Copyright by The HDF Group. *
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* All rights reserved. *
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* *
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* This file is part of HDF5. The full HDF5 copyright notice, including *
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* terms governing use, modification, and redistribution, is contained in *
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* the COPYING file, which can be found at the root of the source code *
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* distribution tree, or in https://www.hdfgroup.org/licenses. *
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* If you do not have access to either file, you may request a copy from *
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* help@hdfgroup.org. *
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* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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/* H5pubconf.h Generated By CMake during the configuration */
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#ifndef H5_CONFIG_H_
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#define H5_CONFIG_H_
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/* Define if the Windows virtual file driver should be compiled */
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#cmakedefine H5_HAVE_WINDOWS @H5_HAVE_WINDOWS@
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/* Define if using MinGW */
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#cmakedefine H5_HAVE_MINGW @H5_HAVE_MINGW@
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/* Define if on the Windows platform and default WIN32 API */
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#cmakedefine H5_HAVE_WIN32_API @H5_HAVE_WIN32_API@
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/* Define if using a Windows compiler (i.e. Visual Studio) */
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#cmakedefine H5_HAVE_VISUAL_STUDIO @H5_HAVE_VISUAL_STUDIO@
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/* Define if C++ compiler recognizes offsetof */
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#cmakedefine H5_CXX_HAVE_OFFSETOF @CXX_HAVE_OFFSETOF@
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/* Define the default plugins path to compile */
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#cmakedefine H5_DEFAULT_PLUGINDIR "@H5_DEFAULT_PLUGINDIR@"
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/* Define if dev_t is a scalar */
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#cmakedefine H5_DEV_T_IS_SCALAR @H5_DEV_T_IS_SCALAR@
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/* Define if your system is IBM ppc64le and cannot convert some long double
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values correctly. */
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#cmakedefine H5_DISABLE_SOME_LDOUBLE_CONV @H5_DISABLE_SOME_LDOUBLE_CONV@
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/* Define to dummy `main' function (if any) required to link to the Fortran
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libraries. */
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#cmakedefine H5_FC_DUMMY_MAIN @H5_FC_DUMMY_MAIN@
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/* Define if F77 and FC dummy `main' functions are identical. */
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#cmakedefine H5_FC_DUMMY_MAIN_EQ_F77 @H5_FC_DUMMY_MAIN_EQ_F77@
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/* Define to a macro mangling the given C identifier (in lower and upper
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case), which must not contain underscores, for linking with Fortran. */
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#define @H5_FC_FUNC@
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/* As FC_FUNC, but for C identifiers containing underscores. */
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#define @H5_FC_FUNC_@
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/* Define if Fortran C_LONG_DOUBLE is different from C_DOUBLE */
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#define H5_FORTRAN_C_LONG_DOUBLE_IS_UNIQUE @H5_FORTRAN_C_LONG_DOUBLE_IS_UNIQUE@
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/* Define if we have Fortran C_LONG_DOUBLE */
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#define H5_FORTRAN_HAVE_C_LONG_DOUBLE @H5_FORTRAN_HAVE_C_LONG_DOUBLE@
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/* Define if we have Fortran intrinsic C_SIZEOF */
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#cmakedefine H5_FORTRAN_HAVE_C_SIZEOF @H5_FORTRAN_HAVE_C_SIZEOF@
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/* Define if we have Fortran intrinsic SIZEOF */
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#cmakedefine H5_FORTRAN_HAVE_SIZEOF @H5_FORTRAN_HAVE_SIZEOF@
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/* Define if we have Fortran intrinsic STORAGE_SIZE */
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#cmakedefine H5_FORTRAN_HAVE_STORAGE_SIZE @H5_FORTRAN_HAVE_STORAGE_SIZE@
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/* Determine the size of C long double */
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#cmakedefine H5_FORTRAN_SIZEOF_LONG_DOUBLE @H5_FORTRAN_SIZEOF_LONG_DOUBLE@
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/* Define Fortran compiler ID */
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#define H5_Fortran_COMPILER_ID @CMAKE_Fortran_COMPILER_ID@
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/* Define valid Fortran INTEGER KINDs */
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#cmakedefine H5_H5CONFIG_F_IKIND @H5_H5CONFIG_F_IKIND@
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/* Define number of valid Fortran INTEGER KINDs */
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#cmakedefine H5_H5CONFIG_F_NUM_IKIND @H5_H5CONFIG_F_NUM_IKIND@
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/* Define number of valid Fortran REAL KINDs */
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#cmakedefine H5_H5CONFIG_F_NUM_RKIND @H5_H5CONFIG_F_NUM_RKIND@
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/* Define valid Fortran REAL KINDs */
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#cmakedefine H5_H5CONFIG_F_RKIND @H5_H5CONFIG_F_RKIND@
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/* Define valid Fortran REAL KINDs Sizeof */
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#cmakedefine H5_H5CONFIG_F_RKIND_SIZEOF @H5_H5CONFIG_F_RKIND_SIZEOF@
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/* Define to 1 if you have the `alarm' function. */
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#cmakedefine H5_HAVE_ALARM @H5_HAVE_ALARM@
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/* Define to 1 if you have the <arpa/inet.h> header file. */
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#cmakedefine H5_HAVE_ARPA_INET_H @H5_HAVE_ARPA_INET_H@
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/* Define to 1 if you have the `asprintf' function. */
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#cmakedefine H5_HAVE_ASPRINTF @H5_HAVE_ASPRINTF@
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/* Define if the __attribute__(()) extension is present */
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#cmakedefine H5_HAVE_ATTRIBUTE @H5_HAVE_ATTRIBUTE@
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/* Define if the compiler understands C99 designated initialization of structs
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and unions */
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#cmakedefine H5_HAVE_C99_DESIGNATED_INITIALIZER @H5_HAVE_C99_DESIGNATED_INITIALIZER@
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/* Define if the compiler understands the __func__ keyword */
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#cmakedefine H5_HAVE_C99_FUNC @H5_HAVE_C99_FUNC@
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/* Define to 1 if you have the `clock_gettime' function. */
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#cmakedefine H5_HAVE_CLOCK_GETTIME @H5_HAVE_CLOCK_GETTIME@
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/* Define if the function stack tracing code is to be compiled in */
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#cmakedefine H5_HAVE_CODESTACK @H5_HAVE_CODESTACK@
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/* Define to 1 if you have the <curl/curl.h> header file. */
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#cmakedefine H5_HAVE_CURL_CURL_H @H5_HAVE_CURL_H@
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/* Define if Darwin or Mac OS X */
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#cmakedefine H5_HAVE_DARWIN @H5_HAVE_DARWIN@
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/* Define to 1 if you have the `difftime' function. */
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#cmakedefine H5_HAVE_DIFFTIME @H5_HAVE_DIFFTIME@
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/* Define if the direct I/O virtual file driver (VFD) should be compiled */
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#cmakedefine H5_HAVE_DIRECT @H5_HAVE_DIRECT@
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/* Define to 1 if you have the <dirent.h> header file. */
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#cmakedefine H5_HAVE_DIRENT_H @H5_HAVE_DIRENT_H@
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/* Define to 1 if you have the <dlfcn.h> header file. */
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#cmakedefine H5_HAVE_DLFCN_H @H5_HAVE_DLFCN_H@
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/* Define to 1 if you have the <dmalloc.h> header file. */
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#cmakedefine H5_HAVE_DMALLOC_H @H5_HAVE_DMALLOC_H@
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/* Define if library information should be embedded in the executables */
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#cmakedefine H5_HAVE_EMBEDDED_LIBINFO @H5_HAVE_EMBEDDED_LIBINFO@
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/* Define to 1 if you have the `fcntl' function. */
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#cmakedefine H5_HAVE_FCNTL @H5_HAVE_FCNTL@
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/* Define to 1 if you have the <features.h> header file. */
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#cmakedefine H5_HAVE_FEATURES_H @H5_HAVE_FEATURES_H@
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/* Define if support for deflate (zlib) filter is enabled */
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#cmakedefine H5_HAVE_FILTER_DEFLATE @H5_HAVE_FILTER_DEFLATE@
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/* Define if support for szip filter is enabled */
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#cmakedefine H5_HAVE_FILTER_SZIP @H5_HAVE_FILTER_SZIP@
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/* Determine if __float128 is available */
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#cmakedefine H5_HAVE_FLOAT128 @H5_HAVE_FLOAT128@
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/* Define to 1 if you have the `flock' function. */
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#cmakedefine H5_HAVE_FLOCK @H5_HAVE_FLOCK@
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/* Define to 1 if you have the `fork' function. */
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#cmakedefine H5_HAVE_FORK @H5_HAVE_FORK@
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/* Define to 1 if you have the `frexpf' function. */
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#cmakedefine H5_HAVE_FREXPF @H5_HAVE_FREXPF@
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/* Define to 1 if you have the `frexpl' function. */
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#cmakedefine H5_HAVE_FREXPL @H5_HAVE_FREXPL@
|
|
|
|
/* Define to 1 if you have the `fseeko' function. */
|
|
#cmakedefine H5_HAVE_FSEEKO @H5_HAVE_FSEEKO@
|
|
|
|
/* Define if the compiler understands the __FUNCTION__ keyword */
|
|
#cmakedefine H5_HAVE_FUNCTION @H5_HAVE_FUNCTION@
|
|
|
|
/* Determine if INTEGER*16 is available */
|
|
#cmakedefine H5_HAVE_Fortran_INTEGER_SIZEOF_16 @H5_HAVE_Fortran_INTEGER_SIZEOF_16@
|
|
|
|
/* Define to 1 if you have the `GetConsoleScreenBufferInfo' function. */
|
|
#cmakedefine H5_HAVE_GETCONSOLESCREENBUFFERINFO @H5_HAVE_GETCONSOLESCREENBUFFERINFO@
|
|
|
|
/* Define to 1 if you have the `gethostname' function. */
|
|
#cmakedefine H5_HAVE_GETHOSTNAME @H5_HAVE_GETHOSTNAME@
|
|
|
|
/* Define to 1 if you have the `getpwuid' function. */
|
|
#cmakedefine H5_HAVE_GETPWUID @H5_HAVE_GETPWUID@
|
|
|
|
/* Define to 1 if you have the `getrusage' function. */
|
|
#cmakedefine H5_HAVE_GETRUSAGE @H5_HAVE_GETRUSAGE@
|
|
|
|
/* Define to 1 if you have the `gettextinfo' function. */
|
|
#cmakedefine H5_HAVE_GETTEXTINFO @H5_HAVE_GETTEXTINFO@
|
|
|
|
/* Define to 1 if you have the `gettimeofday' function. */
|
|
#cmakedefine H5_HAVE_GETTIMEOFDAY @H5_HAVE_GETTIMEOFDAY@
|
|
|
|
/* Define to 1 if you have the <hdfs.h> header file. */
|
|
#cmakedefine H5_HAVE_HDFS_H @H5_HAVE_HDFS_H@
|
|
|
|
/* Define if parallel library will contain instrumentation to detect correct
|
|
optimization operation */
|
|
#cmakedefine H5_HAVE_INSTRUMENTED_LIBRARY @H5_HAVE_INSTRUMENTED_LIBRARY@
|
|
|
|
/* Define to 1 if you have the `ioctl' function. */
|
|
#cmakedefine H5_HAVE_IOCTL @H5_HAVE_IOCTL@
|
|
|
|
/* Define to 1 if you have the `crypto' library (-lcrypto). */
|
|
#cmakedefine H5_HAVE_LIBCRYPTO @H5_HAVE_LIBCRYPTO@
|
|
|
|
/* Define to 1 if you have the `curl' library (-lcurl). */
|
|
#cmakedefine H5_HAVE_LIBCURL @H5_HAVE_LIBCURL@
|
|
|
|
/* Define to 1 if you have the `dl' library (-ldl). */
|
|
#cmakedefine H5_HAVE_LIBDL @H5_HAVE_LIBDL@
|
|
|
|
/* Define to 1 if you have the `dmalloc' library (-ldmalloc). */
|
|
#cmakedefine H5_HAVE_LIBDMALLOC @H5_HAVE_LIBDMALLOC@
|
|
|
|
/* Proceed to build with libhdfs */
|
|
#cmakedefine H5_HAVE_LIBHDFS @H5_HAVE_LIBHDFS@
|
|
|
|
/* Define to 1 if you have the `jvm' library (-ljvm). */
|
|
#cmakedefine H5_HAVE_LIBJVM @H5_HAVE_LIBJVM@
|
|
|
|
/* Define to 1 if you have the `m' library (-lm). */
|
|
#cmakedefine H5_HAVE_LIBM @H5_HAVE_LIBM@
|
|
|
|
/* Define to 1 if you have the `mpe' library (-lmpe). */
|
|
#cmakedefine H5_HAVE_LIBMPE @H5_HAVE_LIBMPE@
|
|
|
|
/* Define to 1 if you have the `pthread' library (-lpthread). */
|
|
#cmakedefine H5_HAVE_LIBPTHREAD @H5_HAVE_LIBPTHREAD@
|
|
|
|
/* Define to 1 if you have the `sz' library (-lsz). */
|
|
#cmakedefine H5_HAVE_LIBSZ @H5_HAVE_LIBSZ@
|
|
|
|
/* Define to 1 if you have the `ws2_32' library (-lws2_32). */
|
|
#cmakedefine H5_HAVE_LIBWS2_32 @H5_HAVE_LIBWS2_32@
|
|
|
|
/* Define to 1 if you have the `z' library (-lz). */
|
|
#cmakedefine H5_HAVE_LIBZ @H5_HAVE_LIBZ@
|
|
|
|
/* Define to 1 if you have the `llround' function. */
|
|
#cmakedefine H5_HAVE_LLROUND @H5_HAVE_LLROUND@
|
|
|
|
/* Define to 1 if you have the `llroundf' function. */
|
|
#cmakedefine H5_HAVE_LLROUNDF @H5_HAVE_LLROUNDF@
|
|
|
|
/* Define to 1 if you have the `longjmp' function. */
|
|
#cmakedefine H5_HAVE_LONGJMP @H5_HAVE_LONGJMP@
|
|
|
|
/* Define to 1 if you have the `lround' function. */
|
|
#cmakedefine H5_HAVE_LROUND @H5_HAVE_LROUND@
|
|
|
|
/* Define to 1 if you have the `lroundf' function. */
|
|
#cmakedefine H5_HAVE_LROUNDF @H5_HAVE_LROUNDF@
|
|
|
|
/* Define to 1 if you have the `lseek64' function. */
|
|
#cmakedefine H5_HAVE_LSEEK64 @H5_HAVE_LSEEK64@
|
|
|
|
/* Define to 1 if you have the `lstat' function. */
|
|
#cmakedefine H5_HAVE_LSTAT @H5_HAVE_LSTAT@
|
|
|
|
/* Define to 1 if you have the <memory.h> header file. */
|
|
#cmakedefine H5_HAVE_MEMORY_H @H5_HAVE_MEMORY_H@
|
|
|
|
/* Define whether the Mirror virtual file driver (VFD) will be compiled */
|
|
#cmakedefine H5_HAVE_MIRROR_VFD @H5_HAVE_MIRROR_VFD@
|
|
|
|
/* Define if we have MPE support */
|
|
#cmakedefine H5_HAVE_MPE @H5_HAVE_MPE@
|
|
|
|
/* Define to 1 if you have the <mpe.h> header file. */
|
|
#cmakedefine H5_HAVE_MPE_H @H5_HAVE_MPE_H@
|
|
|
|
/* Define if MPI_Comm_c2f and MPI_Comm_f2c exist */
|
|
#cmakedefine H5_HAVE_MPI_MULTI_LANG_Comm @H5_HAVE_MPI_MULTI_LANG_Comm@
|
|
|
|
/* Define if MPI_Info_c2f and MPI_Info_f2c exist */
|
|
#cmakedefine H5_HAVE_MPI_MULTI_LANG_Info @H5_HAVE_MPI_MULTI_LANG_Info@
|
|
|
|
/* Define to 1 if you have the <netdb.h> header file. */
|
|
#cmakedefine H5_HAVE_NETDB_H @H5_HAVE_NETDB_H@
|
|
|
|
/* Define to 1 if you have the <netinet/in.h> header file. */
|
|
#cmakedefine H5_HAVE_NETINET_IN_H @H5_HAVE_NETINET_IN_H@
|
|
|
|
/* Define to 1 if you have the <openssl/evp.h> header file. */
|
|
#cmakedefine H5_HAVE_OPENSSL_EVP_H @H5_HAVE_OPENSSL_EVP_H@
|
|
|
|
/* Define to 1 if you have the <openssl/hmac.h> header file. */
|
|
#cmakedefine H5_HAVE_OPENSSL_HMAC_H @H5_HAVE_OPENSSL_HMAC_H@
|
|
|
|
/* Define to 1 if you have the <openssl/sha.h> header file. */
|
|
#cmakedefine H5_HAVE_OPENSSL_SHA_H @H5_HAVE_OPENSSL_SHA_H@
|
|
|
|
/* Define if we have parallel support */
|
|
#cmakedefine H5_HAVE_PARALLEL @H5_HAVE_PARALLEL@
|
|
|
|
/* Define if both pread and pwrite exist. */
|
|
#cmakedefine H5_HAVE_PREADWRITE @H5_HAVE_PREADWRITE@
|
|
|
|
/* Define to 1 if you have the <pthread.h> header file. */
|
|
#cmakedefine H5_HAVE_PTHREAD_H @H5_HAVE_PTHREAD_H@
|
|
|
|
/* Define to 1 if you have the <quadmath.h> header file. */
|
|
#cmakedefine H5_HAVE_QUADMATH_H @H5_HAVE_QUADMATH_H@
|
|
|
|
/* Define to 1 if you have the `random' function. */
|
|
#cmakedefine H5_HAVE_RANDOM @H5_HAVE_RANDOM@
|
|
|
|
/* Define to 1 if you have the `rand_r' function. */
|
|
#cmakedefine H5_HAVE_RAND_R @H5_HAVE_RAND_R@
|
|
|
|
/* Define whether the Read-Only S3 virtual file driver (VFD) should be
|
|
compiled */
|
|
#cmakedefine H5_HAVE_ROS3_VFD @H5_HAVE_ROS3_VFD@
|
|
|
|
/* Define to 1 if you have the `round' function. */
|
|
#cmakedefine H5_HAVE_ROUND @H5_HAVE_ROUND@
|
|
|
|
/* Define to 1 if you have the `roundf' function. */
|
|
#cmakedefine H5_HAVE_ROUNDF @H5_HAVE_ROUNDF@
|
|
|
|
/* Define to 1 if you have the `setjmp' function. */
|
|
#cmakedefine H5_HAVE_SETJMP @H5_HAVE_SETJMP@
|
|
|
|
/* Define to 1 if you have the <setjmp.h> header file. */
|
|
#cmakedefine H5_HAVE_SETJMP_H @H5_HAVE_SETJMP_H@
|
|
|
|
/* Define to 1 if you have the `setsysinfo' function. */
|
|
#cmakedefine H5_HAVE_SETSYSINFO @H5_HAVE_SETSYSINFO@
|
|
|
|
/* Define to 1 if you have the `siglongjmp' function. */
|
|
#cmakedefine H5_HAVE_SIGLONGJMP @H5_HAVE_SIGLONGJMP@
|
|
|
|
/* Define to 1 if you have the `signal' function. */
|
|
#cmakedefine H5_HAVE_SIGNAL @H5_HAVE_SIGNAL@
|
|
|
|
/* Define to 1 if you have the `sigprocmask' function. */
|
|
#cmakedefine H5_HAVE_SIGPROCMASK @H5_HAVE_SIGPROCMASK@
|
|
|
|
/* Define to 1 if you have the `sigsetjmp' function. */
|
|
#cmakedefine H5_HAVE_SIGSETJMP @H5_HAVE_SIGSETJMP@
|
|
|
|
/* Define to 1 if you have the `srandom' function. */
|
|
#cmakedefine H5_HAVE_SRANDOM @H5_HAVE_SRANDOM@
|
|
|
|
/* Define to 1 if you have the `stat64' function. */
|
|
#cmakedefine H5_HAVE_STAT64 @H5_HAVE_STAT64@
|
|
|
|
/* Define if struct stat has the st_blocks field */
|
|
#cmakedefine H5_HAVE_STAT_ST_BLOCKS @H5_HAVE_STAT_ST_BLOCKS@
|
|
|
|
/* Define to 1 if you have the <stddef.h> header file. */
|
|
#cmakedefine H5_HAVE_STDDEF_H @H5_HAVE_STDDEF_H@
|
|
|
|
/* Define to 1 if you have the <stdlib.h> header file. */
|
|
#cmakedefine H5_HAVE_STDLIB_H @H5_HAVE_STDLIB_H@
|
|
|
|
/* Define to 1 if you have the `strdup' function. */
|
|
#cmakedefine H5_HAVE_STRDUP @H5_HAVE_STRDUP@
|
|
|
|
/* Define to 1 if you have the <strings.h> header file. */
|
|
#cmakedefine H5_HAVE_STRINGS_H @H5_HAVE_STRINGS_H@
|
|
|
|
/* Define to 1 if you have the <string.h> header file. */
|
|
#cmakedefine H5_HAVE_STRING_H @H5_HAVE_STRING_H@
|
|
|
|
/* Define if struct text_info is defined */
|
|
#cmakedefine H5_HAVE_STRUCT_TEXT_INFO @H5_HAVE_STRUCT_TEXT_INFO@
|
|
|
|
/* Define if struct videoconfig is defined */
|
|
#cmakedefine H5_HAVE_STRUCT_VIDEOCONFIG @H5_HAVE_STRUCT_VIDEOCONFIG@
|
|
|
|
/* Define to 1 if you have the `symlink' function. */
|
|
#cmakedefine H5_HAVE_SYMLINK @H5_HAVE_SYMLINK@
|
|
|
|
/* Define to 1 if you have the <sys/file.h> header file. */
|
|
#cmakedefine H5_HAVE_SYS_FILE_H @H5_HAVE_SYS_FILE_H@
|
|
|
|
/* Define to 1 if you have the <sys/ioctl.h> header file. */
|
|
#cmakedefine H5_HAVE_SYS_IOCTL_H @H5_HAVE_SYS_IOCTL_H@
|
|
|
|
/* Define to 1 if you have the <sys/resource.h> header file. */
|
|
#cmakedefine H5_HAVE_SYS_RESOURCE_H @H5_HAVE_SYS_RESOURCE_H@
|
|
|
|
/* Define to 1 if you have the <sys/socket.h> header file. */
|
|
#cmakedefine H5_HAVE_SYS_SOCKET_H @H5_HAVE_SYS_SOCKET_H@
|
|
|
|
/* Define to 1 if you have the <sys/stat.h> header file. */
|
|
#cmakedefine H5_HAVE_SYS_STAT_H @H5_HAVE_SYS_STAT_H@
|
|
|
|
/* Define to 1 if you have the <sys/time.h> header file. */
|
|
#cmakedefine H5_HAVE_SYS_TIME_H @H5_HAVE_SYS_TIME_H@
|
|
|
|
/* Define to 1 if you have the <sys/types.h> header file. */
|
|
#cmakedefine H5_HAVE_SYS_TYPES_H @H5_HAVE_SYS_TYPES_H@
|
|
|
|
/* Define to 1 if you have the <szlib.h> header file. */
|
|
#cmakedefine H5_HAVE_SZLIB_H @H5_HAVE_SZLIB_H@
|
|
|
|
#if defined(_WIN32) && !defined(H5_BUILT_AS_DYNAMIC_LIB)
|
|
/* Not supported on WIN32 platforms with static linking */
|
|
/* #undef H5_HAVE_THREADSAFE */
|
|
#else
|
|
/* Define if we have thread safe support */
|
|
# cmakedefine H5_HAVE_THREADSAFE @H5_HAVE_THREADSAFE@
|
|
#endif
|
|
|
|
/* Define if timezone is a global variable */
|
|
#cmakedefine H5_HAVE_TIMEZONE @H5_HAVE_TIMEZONE@
|
|
|
|
/* Define if the ioctl TIOCGETD is defined */
|
|
#cmakedefine H5_HAVE_TIOCGETD @H5_HAVE_TIOCGETD@
|
|
|
|
/* Define if the ioctl TIOGWINSZ is defined */
|
|
#cmakedefine H5_HAVE_TIOCGWINSZ @H5_HAVE_TIOCGWINSZ@
|
|
|
|
/* Define to 1 if you have the `tmpfile' function. */
|
|
#cmakedefine H5_HAVE_TMPFILE @H5_HAVE_TMPFILE@
|
|
|
|
/* Define if tm_gmtoff is a member of struct tm */
|
|
#cmakedefine H5_HAVE_TM_GMTOFF @H5_HAVE_TM_GMTOFF@
|
|
|
|
/* Define to 1 if you have the <unistd.h> header file. */
|
|
#cmakedefine H5_HAVE_UNISTD_H @H5_HAVE_UNISTD_H@
|
|
|
|
/* Define to 1 if you have the `vasprintf' function. */
|
|
#cmakedefine H5_HAVE_VASPRINTF @H5_HAVE_VASPRINTF@
|
|
|
|
/* Define to 1 if you have the `waitpid' function. */
|
|
#cmakedefine H5_HAVE_WAITPID @H5_HAVE_WAITPID@
|
|
|
|
/* Define to 1 if you have the 'InitOnceExecuteOnce' function. */
|
|
#cmakedefine H5_HAVE_WIN_THREADS @H5_HAVE_WIN_THREADS@
|
|
|
|
/* Define if your system has window style path name. */
|
|
#cmakedefine H5_HAVE_WINDOW_PATH @H5_HAVE_WINDOW_PATH@
|
|
|
|
/* Define to 1 if you have the <winsock2.h> header file. */
|
|
#cmakedefine H5_HAVE_WINSOCK2_H @H5_HAVE_WINSOCK2_H@
|
|
|
|
/* Define to 1 if you have the <zlib.h> header file. */
|
|
#cmakedefine H5_HAVE_ZLIB_H @H5_HAVE_ZLIB_H@
|
|
|
|
/* Define to 1 if you have the `_getvideoconfig' function. */
|
|
#cmakedefine H5_HAVE__GETVIDEOCONFIG @H5_HAVE__GETVIDEOCONFIG@
|
|
|
|
/* Define to 1 if you have the `_scrsize' function. */
|
|
#cmakedefine H5_HAVE__SCRSIZE @H5_HAVE__SCRSIZE@
|
|
|
|
/* Define if the library will ignore file locks when disabled */
|
|
#cmakedefine H5_IGNORE_DISABLED_FILE_LOCKS @H5_IGNORE_DISABLED_FILE_LOCKS@
|
|
|
|
/* Define if the high-level library headers should be included in hdf5.h */
|
|
#cmakedefine H5_INCLUDE_HL @H5_INCLUDE_HL@
|
|
|
|
/* Define if your system can convert long double to (unsigned) long long
|
|
values correctly. */
|
|
#cmakedefine H5_LDOUBLE_TO_LLONG_ACCURATE @H5_LDOUBLE_TO_LLONG_ACCURATE@
|
|
|
|
/* Define if your system converts long double to (unsigned) long values with
|
|
special algorithm. */
|
|
#cmakedefine H5_LDOUBLE_TO_LONG_SPECIAL @H5_LDOUBLE_TO_LONG_SPECIAL@
|
|
|
|
/* Define if your system can convert (unsigned) long long to long double
|
|
values correctly. */
|
|
#cmakedefine H5_LLONG_TO_LDOUBLE_CORRECT @H5_LLONG_TO_LDOUBLE_CORRECT@
|
|
|
|
/* Define if your system can convert (unsigned) long to long double values
|
|
with special algorithm. */
|
|
#cmakedefine H5_LONG_TO_LDOUBLE_SPECIAL @H5_LONG_TO_LDOUBLE_SPECIAL@
|
|
|
|
/* Define to the sub-directory where libtool stores uninstalled libraries. */
|
|
#cmakedefine H5_LT_OBJDIR @H5_LT_OBJDIR@
|
|
|
|
/* Define to enable internal memory allocation sanity checking. */
|
|
#cmakedefine H5_MEMORY_ALLOC_SANITY_CHECK @H5_MEMORY_ALLOC_SANITY_CHECK@
|
|
|
|
/* Define if we can violate pointer alignment restrictions */
|
|
#cmakedefine H5_NO_ALIGNMENT_RESTRICTIONS @H5_NO_ALIGNMENT_RESTRICTIONS@
|
|
|
|
/* Define if deprecated public API symbols are disabled */
|
|
#cmakedefine H5_NO_DEPRECATED_SYMBOLS @H5_NO_DEPRECATED_SYMBOLS@
|
|
|
|
/* Name of package */
|
|
#define H5_PACKAGE "@HDF5_PACKAGE@"
|
|
|
|
/* Define to the address where bug reports for this package should be sent. */
|
|
#define H5_PACKAGE_BUGREPORT "@HDF5_PACKAGE_BUGREPORT@"
|
|
|
|
/* Define to the full name of this package. */
|
|
#define H5_PACKAGE_NAME "@HDF5_PACKAGE_NAME@"
|
|
|
|
/* Define to the full name and version of this package. */
|
|
#define H5_PACKAGE_STRING "@HDF5_PACKAGE_STRING@"
|
|
|
|
/* Define to the one symbol short name of this package. */
|
|
#define H5_PACKAGE_TARNAME "@HDF5_PACKAGE_TARNAME@"
|
|
|
|
/* Define to the home page for this package. */
|
|
#define H5_PACKAGE_URL "@HDF5_PACKAGE_URL@"
|
|
|
|
/* Define to the version of this package. */
|
|
#define H5_PACKAGE_VERSION "@HDF5_PACKAGE_VERSION_STRING@"
|
|
|
|
/* Determine the maximum decimal precision in C */
|
|
#define H5_PAC_C_MAX_REAL_PRECISION @H5_PAC_C_MAX_REAL_PRECISION@
|
|
|
|
/* Define Fortran Maximum Real Decimal Precision */
|
|
#define H5_PAC_FC_MAX_REAL_PRECISION @H5_PAC_FC_MAX_REAL_PRECISION@
|
|
|
|
/* Width for printf() for type `long long' or `__int64', use `ll' */
|
|
#cmakedefine H5_PRINTF_LL_WIDTH @H5_PRINTF_LL_WIDTH@
|
|
|
|
/* The size of `bool', as computed by sizeof. */
|
|
#cmakedefine H5_SIZEOF_BOOL @H5_SIZEOF_BOOL@
|
|
|
|
/* The size of `char', as computed by sizeof. */
|
|
#cmakedefine H5_SIZEOF_CHAR @H5_SIZEOF_CHAR@
|
|
|
|
/* The size of `double', as computed by sizeof. */
|
|
#cmakedefine H5_SIZEOF_DOUBLE @H5_SIZEOF_DOUBLE@
|
|
|
|
/* The size of `float', as computed by sizeof. */
|
|
#cmakedefine H5_SIZEOF_FLOAT @H5_SIZEOF_FLOAT@
|
|
|
|
/* The size of `int', as computed by sizeof. */
|
|
#cmakedefine H5_SIZEOF_INT @H5_SIZEOF_INT@
|
|
|
|
/* The size of `int16_t', as computed by sizeof. */
|
|
#cmakedefine H5_SIZEOF_INT16_T @H5_SIZEOF_INT16_T@
|
|
|
|
/* The size of `int32_t', as computed by sizeof. */
|
|
#cmakedefine H5_SIZEOF_INT32_T @H5_SIZEOF_INT32_T@
|
|
|
|
/* The size of `int64_t', as computed by sizeof. */
|
|
#cmakedefine H5_SIZEOF_INT64_T @H5_SIZEOF_INT64_T@
|
|
|
|
/* The size of `int8_t', as computed by sizeof. */
|
|
#cmakedefine H5_SIZEOF_INT8_T @H5_SIZEOF_INT8_T@
|
|
|
|
/* The size of `int_fast16_t', as computed by sizeof. */
|
|
#cmakedefine H5_SIZEOF_INT_FAST16_T @H5_SIZEOF_INT_FAST16_T@
|
|
|
|
/* The size of `int_fast32_t', as computed by sizeof. */
|
|
#cmakedefine H5_SIZEOF_INT_FAST32_T @H5_SIZEOF_INT_FAST32_T@
|
|
|
|
/* The size of `int_fast64_t', as computed by sizeof. */
|
|
#cmakedefine H5_SIZEOF_INT_FAST64_T @H5_SIZEOF_INT_FAST64_T@
|
|
|
|
/* The size of `int_fast8_t', as computed by sizeof. */
|
|
#cmakedefine H5_SIZEOF_INT_FAST8_T @H5_SIZEOF_INT_FAST8_T@
|
|
|
|
/* The size of `int_least16_t', as computed by sizeof. */
|
|
#cmakedefine H5_SIZEOF_INT_LEAST16_T @H5_SIZEOF_INT_LEAST16_T@
|
|
|
|
/* The size of `int_least32_t', as computed by sizeof. */
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#cmakedefine H5_SIZEOF_INT_LEAST32_T @H5_SIZEOF_INT_LEAST32_T@
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/* The size of `int_least64_t', as computed by sizeof. */
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#cmakedefine H5_SIZEOF_INT_LEAST64_T @H5_SIZEOF_INT_LEAST64_T@
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/* The size of `int_least8_t', as computed by sizeof. */
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|
#cmakedefine H5_SIZEOF_INT_LEAST8_T @H5_SIZEOF_INT_LEAST8_T@
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#if !defined(__APPLE__)
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|
|
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/* The size of `size_t', as computed by sizeof. */
|
|
#cmakedefine H5_SIZEOF_SIZE_T @H5_SIZEOF_SIZE_T@
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|
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/* The size of `ssize_t', as computed by sizeof. */
|
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#cmakedefine H5_SIZEOF_SSIZE_T @H5_SIZEOF_SSIZE_T@
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|
|
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/* The size of `long', as computed by sizeof. */
|
|
#cmakedefine H5_SIZEOF_LONG @H5_SIZEOF_LONG@
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|
|
|
/* The size of `long double', as computed by sizeof. */
|
|
#cmakedefine H5_SIZEOF_LONG_DOUBLE @H5_SIZEOF_LONG_DOUBLE@
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|
|
|
#else
|
|
|
|
/* On Apple, to support Universal Binaries (where multiple CPU
|
|
architectures exist in one library/executable), we can't assume
|
|
the machine doing the compiling has the same endianness or type
|
|
sizes as all the various architectures (PowerPC, Intel, ARM). */
|
|
|
|
# if defined(__LP64__) && __LP64__
|
|
#define H5_SIZEOF_LONG 8
|
|
#define H5_SIZEOF_SIZE_T 8
|
|
#define H5_SIZEOF_SSIZE_T 8
|
|
# else
|
|
#define H5_SIZEOF_LONG 4
|
|
#define H5_SIZEOF_SIZE_T 4
|
|
#define H5_SIZEOF_SSIZE_T 4
|
|
# endif
|
|
|
|
# if defined(__i386__) || defined(__x86_64__)
|
|
#define H5_SIZEOF_LONG_DOUBLE 16
|
|
# elif defined(__aarch64__)
|
|
#define H5_SIZEOF_LONG_DOUBLE 8
|
|
# else
|
|
#cmakedefine H5_SIZEOF_LONG_DOUBLE @H5_SIZEOF_LONG_DOUBLE@
|
|
# endif
|
|
|
|
#endif
|
|
|
|
/* Define size of long long and/or __int64 bit integer type only if the type
|
|
exists. */
|
|
#if !defined(__APPLE__)
|
|
#cmakedefine H5_SIZEOF_LONG_LONG @H5_SIZEOF_LONG_LONG@
|
|
#else
|
|
#define H5_SIZEOF_LONG_LONG 8
|
|
#endif
|
|
|
|
/* The size of `off64_t', as computed by sizeof. */
|
|
#cmakedefine H5_SIZEOF_OFF64_T @H5_SIZEOF_OFF64_T@
|
|
|
|
/* The size of `off_t', as computed by sizeof. */
|
|
#cmakedefine H5_SIZEOF_OFF_T @H5_SIZEOF_OFF_T@
|
|
|
|
/* The size of `ptrdiff_t', as computed by sizeof. */
|
|
#cmakedefine H5_SIZEOF_PTRDIFF_T @H5_SIZEOF_PTRDIFF_T@
|
|
|
|
/* The size of `short', as computed by sizeof. */
|
|
#cmakedefine H5_SIZEOF_SHORT @H5_SIZEOF_SHORT@
|
|
|
|
/* The size of `time_t', as computed by sizeof. */
|
|
#cmakedefine H5_SIZEOF_TIME_T @H5_SIZEOF_TIME_T@
|
|
|
|
/* The size of `uint16_t', as computed by sizeof. */
|
|
#cmakedefine H5_SIZEOF_UINT16_T @H5_SIZEOF_UINT16_T@
|
|
|
|
/* The size of `uint32_t', as computed by sizeof. */
|
|
#cmakedefine H5_SIZEOF_UINT32_T @H5_SIZEOF_UINT32_T@
|
|
|
|
/* The size of `uint64_t', as computed by sizeof. */
|
|
#cmakedefine H5_SIZEOF_UINT64_T @H5_SIZEOF_UINT64_T@
|
|
|
|
/* The size of `uint8_t', as computed by sizeof. */
|
|
#cmakedefine H5_SIZEOF_UINT8_T @H5_SIZEOF_UINT8_T@
|
|
|
|
/* The size of `uint_fast16_t', as computed by sizeof. */
|
|
#cmakedefine H5_SIZEOF_UINT_FAST16_T @H5_SIZEOF_UINT_FAST16_T@
|
|
|
|
/* The size of `uint_fast32_t', as computed by sizeof. */
|
|
#cmakedefine H5_SIZEOF_UINT_FAST32_T @H5_SIZEOF_UINT_FAST32_T@
|
|
|
|
/* The size of `uint_fast64_t', as computed by sizeof. */
|
|
#cmakedefine H5_SIZEOF_UINT_FAST64_T @H5_SIZEOF_UINT_FAST64_T@
|
|
|
|
/* The size of `uint_fast8_t', as computed by sizeof. */
|
|
#cmakedefine H5_SIZEOF_UINT_FAST8_T @H5_SIZEOF_UINT_FAST8_T@
|
|
|
|
/* The size of `uint_least16_t', as computed by sizeof. */
|
|
#cmakedefine H5_SIZEOF_UINT_LEAST16_T @H5_SIZEOF_UINT_LEAST16_T@
|
|
|
|
/* The size of `uint_least32_t', as computed by sizeof. */
|
|
#cmakedefine H5_SIZEOF_UINT_LEAST32_T @H5_SIZEOF_UINT_LEAST32_T@
|
|
|
|
/* The size of `uint_least64_t', as computed by sizeof. */
|
|
#cmakedefine H5_SIZEOF_UINT_LEAST64_T @H5_SIZEOF_UINT_LEAST64_T@
|
|
|
|
/* The size of `uint_least8_t', as computed by sizeof. */
|
|
#cmakedefine H5_SIZEOF_UINT_LEAST8_T @H5_SIZEOF_UINT_LEAST8_T@
|
|
|
|
/* The size of `unsigned', as computed by sizeof. */
|
|
#cmakedefine H5_SIZEOF_UNSIGNED @H5_SIZEOF_UNSIGNED@
|
|
|
|
/* The size of `_Quad', as computed by sizeof. */
|
|
#define H5_SIZEOF__QUAD @H5_SIZEOF__QUAD@
|
|
|
|
/* The size of `__float128', as computed by sizeof. */
|
|
#define H5_SIZEOF___FLOAT128 @H5_SIZEOF___FLOAT128@
|
|
|
|
/* The size of `__int64', as computed by sizeof. */
|
|
#define H5_SIZEOF___INT64 @H5_SIZEOF___INT64@
|
|
|
|
/* Define if strict file format checks are enabled */
|
|
#cmakedefine H5_STRICT_FORMAT_CHECKS @H5_STRICT_FORMAT_CHECKS@
|
|
|
|
/* Define if your system supports pthread_attr_setscope(&attribute,
|
|
PTHREAD_SCOPE_SYSTEM) call. */
|
|
#cmakedefine H5_SYSTEM_SCOPE_THREADS @H5_SYSTEM_SCOPE_THREADS@
|
|
|
|
/* Define to 1 if you can safely include both <sys/time.h> and <time.h>. */
|
|
#cmakedefine H5_TIME_WITH_SYS_TIME @H5_TIME_WITH_SYS_TIME@
|
|
|
|
/* Define using v1.10 public API symbols by default */
|
|
#cmakedefine H5_USE_110_API_DEFAULT @H5_USE_110_API_DEFAULT@
|
|
|
|
/* Define using v1.6 public API symbols by default */
|
|
#cmakedefine H5_USE_16_API_DEFAULT @H5_USE_16_API_DEFAULT@
|
|
|
|
/* Define using v1.8 public API symbols by default */
|
|
#cmakedefine H5_USE_18_API_DEFAULT @H5_USE_18_API_DEFAULT@
|
|
|
|
/* Define if the library will use file locking */
|
|
#cmakedefine H5_USE_FILE_LOCKING @H5_USE_FILE_LOCKING@
|
|
|
|
/* Define if a memory checking tool will be used on the library, to cause
|
|
library to be very picky about memory operations and also disable the
|
|
internal free list manager code. */
|
|
#cmakedefine H5_USING_MEMCHECKER @H5_USING_MEMCHECKER@
|
|
|
|
/* Version number of package */
|
|
#define H5_VERSION "@HDF5_PACKAGE_VERSION_STRING@"
|
|
|
|
/* Data accuracy is prefered to speed during data conversions */
|
|
#cmakedefine H5_WANT_DATA_ACCURACY @H5_WANT_DATA_ACCURACY@
|
|
|
|
/* Check exception handling functions during data conversions */
|
|
#cmakedefine H5_WANT_DCONV_EXCEPTION @H5_WANT_DCONV_EXCEPTION@
|
|
|
|
/* Define WORDS_BIGENDIAN to 1 if your processor stores words with the most
|
|
significant byte first (like Motorola and SPARC, unlike Intel). */
|
|
#if !defined(__APPLE__)
|
|
# ifndef WORDS_BIGENDIAN
|
|
# undef WORDS_BIGENDIAN
|
|
# endif
|
|
#else
|
|
# if defined __BIG_ENDIAN__
|
|
# define WORDS_BIGENDIAN 1
|
|
# endif
|
|
#endif
|
|
|
|
#cmakedefine WORDS_BIGENDIAN @H5_WORDS_BIGENDIANR@
|
|
|
|
/* Number of bits in a file offset, on hosts where this is settable. */
|
|
#cmakedefine H5__FILE_OFFSET_BITS
|
|
|
|
/* Define for large files, on AIX-style hosts. */
|
|
#cmakedefine H5__LARGE_FILES
|
|
|
|
/* Define to empty if `const' does not conform to ANSI C. */
|
|
#cmakedefine H5_const
|
|
|
|
/* Define to `long int' if <sys/types.h> does not define. */
|
|
#cmakedefine H5_off_t
|
|
|
|
/* Define to `long' if <sys/types.h> does not define. */
|
|
#cmakedefine H5_ptrdiff_t
|
|
|
|
/* Define to `unsigned long' if <sys/types.h> does not define. */
|
|
#cmakedefine H5_size_t
|
|
|
|
/* Define to `long' if <sys/types.h> does not define. */
|
|
#cmakedefine H5_ssize_t
|
|
|
|
#endif
|