Files
hdf5/config/cmake
Larry Knox 8590e58ebb Merge issue 839 develop PRs to hdf5 1 10 - round 3 (#853)
* Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
maintain binary compatibility.

* Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

* Removes gratuitous (double)x.yF casts (#632)

* Committing clang-format changes

* Removes gratuitous (double)x.yF casts

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Cleans up a const warning left over from previous constification (#633)

* Committing clang-format changes

* Adds consts to a few global variables

* Cleans up a const warning left over from previous constification

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Purges UFAIL from the library (#637)

* Committing clang-format changes

* Purges UFAIL from the library

* H5HL_insert change requested in PR

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Bmr dev hdffv 11223 (#640)

* Fixed HDFFV-11223 (CVE-2018-14460)

Description
    - Added checks against buffer size to prevent segfault, in case of data
      corruption, for sdim->size and sdim->max.
    - Renamed data files in an existing test to shorten their length
      as agreed with other developers previously.
Platforms tested:
    Linux/64 (jelly)

* Committing clang-format changes

* Updated for test files

* Updated for HDFFV-11223

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Committing clang-format changes

* Restore "error:" in line 2666.

* Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

This reverts commit 426b504848.

* Snapshot version 1.10 release 8-1. Update version to 1.10.8-2.

Squashed commit of the following:

commit 60734e63fe
Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com>
Date:   Thu Jun 24 14:20:39 2021 -0500

    Hdf5 1 10 Fix tools test (#796)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    * Update missing release note info.

    * Update code owners

    * Add known problem

    * Use only core library for testing dynamic plugins.

    CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit bfb780a444
Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com>
Date:   Wed Jun 23 14:11:46 2021 -0500

    Hdf5 1 10 Release Note (#786)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    * Update missing release note info.

    * Update code owners

    * Add known problem

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 9f50407368
Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com>
Date:   Tue Jun 22 07:03:26 2021 -0500

    Hdf5 1 10 Update missing release note info. (#778)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    * Update missing release note info.

    * Update code owners

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 2e80c9cdec
Author: Dana Robinson <43805+derobins@users.noreply.github.com>
Date:   Fri Jun 18 06:42:23 2021 -0700

    Brings hash table IDs feature from develop/1.12 (#768)

    * Brings updated tid test from develop

    * Adds empty H5Iint.c and H5Idbg.c files

    * H5I renaming to match 1.12/develop

    * Splits off H5I debug code to H5Idbg.c

    * Splits internal H5I.c functionality to H5Iint.c

    * Header cleanup

    * More renaming cleanup to match develop/1.12

    * Adds "save last ID" optimization

    * Adds uthash.h

    * Adds hash table IDs from develop/1.12

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 1e29bcbfe2
Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com>
Date:   Thu Jun 17 11:21:43 2021 -0500

    Hdf5 1 10 Fix cmake configure path (#762)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    * Fix cmake configure path

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 475cdaf431
Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com>
Date:   Wed Jun 16 15:45:58 2021 -0500

    Hdf5 1 10 merge warnings changes (#756)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    * Merge warnings files fixes from develop

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit e25980e7f3
Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com>
Date:   Tue Jun 8 14:37:13 2021 -0500

    Hdf5 1 10 merges of CMake changes (#738)

    * HDFFV-10865 - merge from dev, HDFArray perf fix.

    * Remove duplicate setting

    * Whitespace changes after clang format

    * Undo version 11 clang format changes

    * Merge CMake changes from develop

    * test testing script merge from develop

    * Update supported platforms

    * PR#3 merge from develop

    * Merge gcc 10 diagnostics option from develop

    * Merge #318 OSX changes from develop

    * Merge small changes from develop

    * Minor non-space formatting changes

    * #386 copyright corrections for java folder

    * Merges from develop

    #358 patches from vtk
    #361 fix header guard spelling

    * Merge updates

    #358 patches from vtk
    #361 fix header guard spelling

    * format fix

    * Fix missing underscore and make H5public.h closer to dev

    * Merges from develop

    #340 clang -Wformat-security warnings
    #360 Fixed uninitialized warnings
    header guard underscore cleanup
    JNI cleanup

    * format alignment

    * Add missing test ref file

    * Merge #380 from develop

    * Finish java merges from develop

    * Fix java issues with tests and javadoc

    * Correct use of attribute access plist

    * Remove debug code

    * Remove unused variable

    * Change file access to read only for java tests

    * Split clang format operations.

    * More javadoc comments

    * Remove pre-split setting

    * format source

    * Change windows TS to use older VS.

    * Mostly all javadoc fixes, one argument rename.

    * synch file

    * Merge of long double fix and compiler flags

    * HDFFV-11229 merge changes from develop

    * HDFFV-11229 correct test script

    * HDFFV-11229 update autotools test script for two ref files

    * HDFFV-11229 merge dev changes for long double display in tools

    * Committing clang-format changes

    * minor whitespace

    * remove unneeded macro

    * Committing clang-format changes

    * Add "option" command for clang options

    * Rework CMake add_custom to use the BYPRODUCTS argument

    Update pkgconfig scripts for parallel builds.
    Fix install COPYING file reference.
    Remove unused round defines.
    Change CMake default setting of BUILD_CPP to off.

    * Fortran target depends

    * Remove incorrect source attribute

    * Revert define removal

    * printf specifiers and VS2015 min changes

    * Committing clang-format changes

    * Add time struct

    * TRILAB-227 and tools debug merges from develop

    * Merge various changes from dev

    * Issue #669 remove version from pkgcfg filename

    * remove version from h5cc script

    * doxygen changes merged from develop

    * Committing clang-format changes

    * Merge CMake fortran ninja changes from dev

    * Enable fortran to gcc yaml

    * Refactor Fortran CMake config tests and CMake test args

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

commit 061b23ac00
Author: Larry Knox <lrknox@hdfgroup.org>
Date:   Thu Jun 3 16:07:23 2021 -0500

    Partial merge issue #642 develop branch PRs to Hdf5 1 10 (#718)

    * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
    maintain binary compatibility.

    * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

    * Removes gratuitous (double)x.yF casts (#632)

    * Committing clang-format changes

    * Removes gratuitous (double)x.yF casts

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Cleans up a const warning left over from previous constification (#633)

    * Committing clang-format changes

    * Adds consts to a few global variables

    * Cleans up a const warning left over from previous constification

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Purges UFAIL from the library (#637)

    * Committing clang-format changes

    * Purges UFAIL from the library

    * H5HL_insert change requested in PR

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Bmr dev hdffv 11223 (#640)

    * Fixed HDFFV-11223 (CVE-2018-14460)

    Description
        - Added checks against buffer size to prevent segfault, in case of data
          corruption, for sdim->size and sdim->max.
        - Renamed data files in an existing test to shorten their length
          as agreed with other developers previously.
    Platforms tested:
        Linux/64 (jelly)

    * Committing clang-format changes

    * Updated for test files

    * Updated for HDFFV-11223

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    * Restore "error:" in line 2666.

    * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

    This reverts commit 426b504848.

    Co-authored-by: jhendersonHDF <jhenderson@hdfgroup.org>
    Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
    Co-authored-by: bmribler <39579120+bmribler@users.noreply.github.com>

* (fix) Segmentation fault when using a compound type. (#143)

* (fix) Segmentation fault when using a compound type.

In the case when a compounded attribute is written to dataset
followed by writing the data with a data transform function
to the dataset will result in a segmentation fault. It turns out
the data is classified as compounded while it is not. Now, the
state is always reset first to not compounded followed by the
existing check if the variable is compounded.

* (fix) Removed undesired comment lines.

* (fix) Segmentation fault when using a compound type: added test.

* (fix) Added the missing cmpd_transform.c file to MANIFEST.

* (fix) cmpd_dtransform test: autotools and source header.

Added the cmp_dtransform test to the autotools configuration and
updated the HDF Group copyright header.

Co-authored-by: Jan-Willem Blokland <Jan-Willem.Blokland@Shell.com>

* (fix) H5Z_xform_create function and scientific notation (#144)

* (fix) H5Z_xform_create function and scientific notation

Implemented a more sophisticated check to support scientific notation
in the expression of the H5Zset_data_transform function.

* (fix) H5Z_xform_create and scientific notation: Added test.

Added a test to demonstrate that the parsing of expression
which includes scientific notation works correctly. Improved
inline comment.

Co-authored-by: Jan-Willem Blokland <Jan-Willem.Blokland@Shell.com>

* Adds const to a few global variables (#623)

* Committing clang-format changes

* Adds consts to a few global variables

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Made private my_yyinput function static (#618)

This prevents it being exported as a public symbol.

* Reduces overly-pedantic casting in the public headers (#644)

* Committing clang-format changes

* Fixes overly pedantic casting in public headers

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Use internal version of H5Eprint2 to avoid possible stack overflow (#661)

* Fixes for a couple of trivial warnings (#676)

* Committing clang-format changes

* Trivial warning fixes:

* Removes an unused done target in H5Tbit.c
* Add (void) to quiet "ignored return value" warnings in the generators
  (which generally ignore errors)

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Removes alternative function enter/leave macro scheme (#678)

* Committing clang-format changes

* Converted BEGIN_FUNC, etc. macros to FUNC_ENTER

* Rips out the BEGIN_FUNC, etc. macros

* Removes 'end if', etc. comments from H5HL package

* Committing clang-format changes

* Fixes an H5EA iterate issue

* Fixes an issue in the H5FA iterator code

* Further cleanup in bin/trace after macro removal

* Iterator changes in H5EA and H5FA

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Various CMake changes (#679)

* Committing clang-format changes

* Several CMake updates:

* Removes unused HDF5_ENABLE_HSIZET
* Switches TEST_SHELL_SCRIPTS to ON
* Sets SH_PROGRAM to bash instead of sh

* Set default build type back to RelWithDebInfo

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Revert "Removes alternative function enter/leave macro scheme (#678)"

This reverts commit edddb11b79.

* err_compat test cleanup (#681)

* Committing clang-format changes

* Cleans up err_compat test and output

* Formatted source

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Sets the memory alloc sanity check option to disabled in autotools (#686)

* Revert "Sets the memory alloc sanity check option to disabled in autotools (#686)"

This reverts commit 652ffca586.

(Only for release branch).

* Removes alternative function enter/leave macro scheme (#678)

* Committing clang-format changes

* Converted BEGIN_FUNC, etc. macros to FUNC_ENTER

* Rips out the BEGIN_FUNC, etc. macros

* Removes 'end if', etc. comments from H5HL package

* Committing clang-format changes

* Fixes an H5EA iterate issue

* Fixes an issue in the H5FA iterator code

* Further cleanup in bin/trace after macro removal

* Iterator changes in H5EA and H5FA

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Committing clang-format changes

* Squashed commit of the following:

commit e2578640fe
Author: Larry Knox <lrknox@hdfgroup.org>
Date:   Fri Jul 16 10:57:51 2021 -0500

    Merge issue 839 changes to hdf5 1 10 (#841)

    * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
    maintain binary compatibility.

    * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

    * Removes gratuitous (double)x.yF casts (#632)

    * Committing clang-format changes

    * Removes gratuitous (double)x.yF casts

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Cleans up a const warning left over from previous constification (#633)

    * Committing clang-format changes

    * Adds consts to a few global variables

    * Cleans up a const warning left over from previous constification

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Purges UFAIL from the library (#637)

    * Committing clang-format changes

    * Purges UFAIL from the library

    * H5HL_insert change requested in PR

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Bmr dev hdffv 11223 (#640)

    * Fixed HDFFV-11223 (CVE-2018-14460)

    Description
        - Added checks against buffer size to prevent segfault, in case of data
          corruption, for sdim->size and sdim->max.
        - Renamed data files in an existing test to shorten their length
          as agreed with other developers previously.
    Platforms tested:
        Linux/64 (jelly)

    * Committing clang-format changes

    * Updated for test files

    * Updated for HDFFV-11223

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    * Restore "error:" in line 2666.

    * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

    This reverts commit 426b504848.

    * Snapshot version 1.10 release 8-1. Update version to 1.10.8-2.

    Squashed commit of the following:

    commit 60734e63fe
    Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com>
    Date:   Thu Jun 24 14:20:39 2021 -0500

        Hdf5 1 10 Fix tools test (#796)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        * Add known problem

        * Use only core library for testing dynamic plugins.

        CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit bfb780a444
    Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com>
    Date:   Wed Jun 23 14:11:46 2021 -0500

        Hdf5 1 10 Release Note (#786)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        * Add known problem

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 9f50407368
    Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com>
    Date:   Tue Jun 22 07:03:26 2021 -0500

        Hdf5 1 10 Update missing release note info. (#778)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 2e80c9cdec
    Author: Dana Robinson <43805+derobins@users.noreply.github.com>
    Date:   Fri Jun 18 06:42:23 2021 -0700

        Brings hash table IDs feature from develop/1.12 (#768)

        * Brings updated tid test from develop

        * Adds empty H5Iint.c and H5Idbg.c files

        * H5I renaming to match 1.12/develop

        * Splits off H5I debug code to H5Idbg.c

        * Splits internal H5I.c functionality to H5Iint.c

        * Header cleanup

        * More renaming cleanup to match develop/1.12

        * Adds "save last ID" optimization

        * Adds uthash.h

        * Adds hash table IDs from develop/1.12

        * Committing clang-format changes

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 1e29bcbfe2
    Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com>
    Date:   Thu Jun 17 11:21:43 2021 -0500

        Hdf5 1 10 Fix cmake configure path (#762)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 475cdaf431
    Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com>
    Date:   Wed Jun 16 15:45:58 2021 -0500

        Hdf5 1 10 merge warnings changes (#756)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit e25980e7f3
    Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com>
    Date:   Tue Jun 8 14:37:13 2021 -0500

        Hdf5 1 10 merges of CMake changes (#738)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 061b23ac00
    Author: Larry Knox <lrknox@hdfgroup.org>
    Date:   Thu Jun 3 16:07:23 2021 -0500

        Partial merge issue #642 develop branch PRs to Hdf5 1 10 (#718)

        * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
        maintain binary compatibility.

        * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

        * Removes gratuitous (double)x.yF casts (#632)

        * Committing clang-format changes

        * Removes gratuitous (double)x.yF casts

        * Committing clang-format changes

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Cleans up a const warning left over from previous constification (#633)

        * Committing clang-format changes

        * Adds consts to a few global variables

        * Cleans up a const warning left over from previous constification

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Purges UFAIL from the library (#637)

        * Committing clang-format changes

        * Purges UFAIL from the library

        * H5HL_insert change requested in PR

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Bmr dev hdffv 11223 (#640)

        * Fixed HDFFV-11223 (CVE-2018-14460)

        Description
            - Added checks against buffer size to prevent segfault, in case of data
              corruption, for sdim->size and sdim->max.
            - Renamed data files in an existing test to shorten their length
              as agreed with other developers previously.
        Platforms tested:
            Linux/64 (jelly)

        * Committing clang-format changes

        * Updated for test files

        * Updated for HDFFV-11223

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Committing clang-format changes

        * Restore "error:" in line 2666.

        * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

        This reverts commit 426b504848.

        Co-authored-by: jhendersonHDF <jhenderson@hdfgroup.org>
        Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
        Co-authored-by: bmribler <39579120+bmribler@users.noreply.github.com>

    * (fix) Segmentation fault when using a compound type. (#143)

    * (fix) Segmentation fault when using a compound type.

    In the case when a compounded attribute is written to dataset
    followed by writing the data with a data transform function
    to the dataset will result in a segmentation fault. It turns out
    the data is classified as compounded while it is not. Now, the
    state is always reset first to not compounded followed by the
    existing check if the variable is compounded.

    * (fix) Removed undesired comment lines.

    * (fix) Segmentation fault when using a compound type: added test.

    * (fix) Added the missing cmpd_transform.c file to MANIFEST.

    * (fix) cmpd_dtransform test: autotools and source header.

    Added the cmp_dtransform test to the autotools configuration and
    updated the HDF Group copyright header.

    Co-authored-by: Jan-Willem Blokland <Jan-Willem.Blokland@Shell.com>

    * (fix) H5Z_xform_create function and scientific notation (#144)

    * (fix) H5Z_xform_create function and scientific notation

    Implemented a more sophisticated check to support scientific notation
    in the expression of the H5Zset_data_transform function.

    * (fix) H5Z_xform_create and scientific notation: Added test.

    Added a test to demonstrate that the parsing of expression
    which includes scientific notation works correctly. Improved
    inline comment.

    Co-authored-by: Jan-Willem Blokland <Jan-Willem.Blokland@Shell.com>

    * Adds const to a few global variables (#623)

    * Committing clang-format changes

    * Adds consts to a few global variables

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Made private my_yyinput function static (#618)

    This prevents it being exported as a public symbol.

    * Reduces overly-pedantic casting in the public headers (#644)

    * Committing clang-format changes

    * Fixes overly pedantic casting in public headers

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Use internal version of H5Eprint2 to avoid possible stack overflow (#661)

    * Fixes for a couple of trivial warnings (#676)

    * Committing clang-format changes

    * Trivial warning fixes:

    * Removes an unused done target in H5Tbit.c
    * Add (void) to quiet "ignored return value" warnings in the generators
      (which generally ignore errors)

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Removes alternative function enter/leave macro scheme (#678)

    * Committing clang-format changes

    * Converted BEGIN_FUNC, etc. macros to FUNC_ENTER

    * Rips out the BEGIN_FUNC, etc. macros

    * Removes 'end if', etc. comments from H5HL package

    * Committing clang-format changes

    * Fixes an H5EA iterate issue

    * Fixes an issue in the H5FA iterator code

    * Further cleanup in bin/trace after macro removal

    * Iterator changes in H5EA and H5FA

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Various CMake changes (#679)

    * Committing clang-format changes

    * Several CMake updates:

    * Removes unused HDF5_ENABLE_HSIZET
    * Switches TEST_SHELL_SCRIPTS to ON
    * Sets SH_PROGRAM to bash instead of sh

    * Set default build type back to RelWithDebInfo

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Revert "Removes alternative function enter/leave macro scheme (#678)"

    This reverts commit edddb11b79.

    * err_compat test cleanup (#681)

    * Committing clang-format changes

    * Cleans up err_compat test and output

    * Formatted source

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Sets the memory alloc sanity check option to disabled in autotools (#686)

    * Revert "Sets the memory alloc sanity check option to disabled in autotools (#686)"

    This reverts commit 652ffca586.

    (Only for release branch).

    * Removes alternative function enter/leave macro scheme (#678)

    * Committing clang-format changes

    * Converted BEGIN_FUNC, etc. macros to FUNC_ENTER

    * Rips out the BEGIN_FUNC, etc. macros

    * Removes 'end if', etc. comments from H5HL package

    * Committing clang-format changes

    * Fixes an H5EA iterate issue

    * Fixes an issue in the H5FA iterator code

    * Further cleanup in bin/trace after macro removal

    * Iterator changes in H5EA and H5FA

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    Co-authored-by: jhendersonHDF <jhenderson@hdfgroup.org>
    Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
    Co-authored-by: bmribler <39579120+bmribler@users.noreply.github.com>
    Co-authored-by: Jan-Willem Blokland <J.W.S.Blokland@XS4All.nl>
    Co-authored-by: Jan-Willem Blokland <Jan-Willem.Blokland@Shell.com>
    Co-authored-by: Sean McBride <sean@rogue-research.com>

commit 14794490ec
Author: Larry Knox <lrknox@hdfgroup.org>
Date:   Wed Jul 14 13:50:26 2021 -0500

    Update version to 1.10.8-2 after snapshot release of 1.10.8-1 (#838)

    * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
    maintain binary compatibility.

    * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

    * Removes gratuitous (double)x.yF casts (#632)

    * Committing clang-format changes

    * Removes gratuitous (double)x.yF casts

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Cleans up a const warning left over from previous constification (#633)

    * Committing clang-format changes

    * Adds consts to a few global variables

    * Cleans up a const warning left over from previous constification

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Purges UFAIL from the library (#637)

    * Committing clang-format changes

    * Purges UFAIL from the library

    * H5HL_insert change requested in PR

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Bmr dev hdffv 11223 (#640)

    * Fixed HDFFV-11223 (CVE-2018-14460)

    Description
        - Added checks against buffer size to prevent segfault, in case of data
          corruption, for sdim->size and sdim->max.
        - Renamed data files in an existing test to shorten their length
          as agreed with other developers previously.
    Platforms tested:
        Linux/64 (jelly)

    * Committing clang-format changes

    * Updated for test files

    * Updated for HDFFV-11223

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    * Restore "error:" in line 2666.

    * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

    This reverts commit 426b504848.

    * Snapshot version 1.10 release 8-1. Update version to 1.10.8-2.

    Squashed commit of the following:

    commit 60734e63fe
    Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com>
    Date:   Thu Jun 24 14:20:39 2021 -0500

        Hdf5 1 10 Fix tools test (#796)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        * Add known problem

        * Use only core library for testing dynamic plugins.

        CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit bfb780a444
    Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com>
    Date:   Wed Jun 23 14:11:46 2021 -0500

        Hdf5 1 10 Release Note (#786)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        * Add known problem

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 9f50407368
    Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com>
    Date:   Tue Jun 22 07:03:26 2021 -0500

        Hdf5 1 10 Update missing release note info. (#778)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 2e80c9cdec
    Author: Dana Robinson <43805+derobins@users.noreply.github.com>
    Date:   Fri Jun 18 06:42:23 2021 -0700

        Brings hash table IDs feature from develop/1.12 (#768)

        * Brings updated tid test from develop

        * Adds empty H5Iint.c and H5Idbg.c files

        * H5I renaming to match 1.12/develop

        * Splits off H5I debug code to H5Idbg.c

        * Splits internal H5I.c functionality to H5Iint.c

        * Header cleanup

        * More renaming cleanup to match develop/1.12

        * Adds "save last ID" optimization

        * Adds uthash.h

        * Adds hash table IDs from develop/1.12

        * Committing clang-format changes

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 1e29bcbfe2
    Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com>
    Date:   Thu Jun 17 11:21:43 2021 -0500

        Hdf5 1 10 Fix cmake configure path (#762)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 475cdaf431
    Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com>
    Date:   Wed Jun 16 15:45:58 2021 -0500

        Hdf5 1 10 merge warnings changes (#756)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit e25980e7f3
    Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com>
    Date:   Tue Jun 8 14:37:13 2021 -0500

        Hdf5 1 10 merges of CMake changes (#738)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 061b23ac00
    Author: Larry Knox <lrknox@hdfgroup.org>
    Date:   Thu Jun 3 16:07:23 2021 -0500

        Partial merge issue #642 develop branch PRs to Hdf5 1 10 (#718)

        * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
        maintain binary compatibility.

        * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

        * Removes gratuitous (double)x.yF casts (#632)

        * Committing clang-format changes

        * Removes gratuitous (double)x.yF casts

        * Committing clang-format changes

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Cleans up a const warning left over from previous constification (#633)

        * Committing clang-format changes

        * Adds consts to a few global variables

        * Cleans up a const warning left over from previous constification

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Purges UFAIL from the library (#637)

        * Committing clang-format changes

        * Purges UFAIL from the library

        * H5HL_insert change requested in PR

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Bmr dev hdffv 11223 (#640)

        * Fixed HDFFV-11223 (CVE-2018-14460)

        Description
            - Added checks against buffer size to prevent segfault, in case of data
              corruption, for sdim->size and sdim->max.
            - Renamed data files in an existing test to shorten their length
              as agreed with other developers previously.
        Platforms tested:
            Linux/64 (jelly)

        * Committing clang-format changes

        * Updated for test files

        * Updated for HDFFV-11223

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Committing clang-format changes

        * Restore "error:" in line 2666.

        * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

        This reverts commit 426b504848.

        Co-authored-by: jhendersonHDF <jhenderson@hdfgroup.org>
        Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
        Co-authored-by: bmribler <39579120+bmribler@users.noreply.github.com>

    Co-authored-by: jhendersonHDF <jhenderson@hdfgroup.org>
    Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
    Co-authored-by: bmribler <39579120+bmribler@users.noreply.github.com>

* Revert references to SIZE_MAX to ((size_t)(-1)) in C header defines used by c++ code that
fail on centos7 when -std=c++11 is not set.

* Fix H5FD_mpio_Debug="rw" can report MPI_count instead of bytes (#699)

* fixed missed closing of a dataset

* fixed missed closing of a dataset

* fixed typo in error return

* Committing clang-format changes

* minor edits

* code format

* Committing clang-format changes

* code format

* minor edit

* switched from using MPI_count, to actual bytes written for H5FD_mpio_debug rw debugging

* Committing clang-format changes

* changed size_i in printf to reflect the I/O.

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Removes pre-C99 build and header cruft (#700)

* Committing clang-format changes

* Removes pre-C99 build and header cruft

* Assumes ANSI C headers exist
* Assumes stdbool.h, stdint.h, and inttypes.h are present
* Assumes the C++ compiler can handle stdint.h
* Removes all work-arounds for missing functionality, especially stdbool.h

* Formats source

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Clean up type size checks in configure.ac (#702)

* Removes some DEC Alpha cruft from H5detect and H5private.h (#708)

* Cleans up hsize_t and haddr_t size guessing (#709)

* Cleans up definitions of haddr_t and hsize_t + cruft removal

* Formatted source

* Revert "Cleans up hsize_t and haddr_t size guessing (#709)"

This reverts commit be6ad9a7a0.

* Updates bin/trace script to correctly wrap H5TRACE macros near clang-format column limit (#719)

* Removes clang-format comments from H5O.c call

* Fixes bin/trace to correctly wrap lines near the clang-format limit

* Removed unused variable from bin/trace
Conflicts:
	bin/trace
	src/H5O.c

* Fixes a segfault when H5Pset_mdc_log_options is called multiple times on a fapl (#601)

* Committing clang-format changes

* Fixes a segfault when H5Pset_mdc_log_options() is called multiple times

An internal string is incorrectly freed when the API call is invoked
multiple times on a property list, which will usually cause a segfault
to occur. On the first call the log location is NULL so the problem
doesn't occur.

Fixes HDFFV-11239

* Fixes typos

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Conflicts:
	release_docs/RELEASE.txt

* Fix for a segfault when H5Pset_fapl_log is passed an invalid fapl ID (#607)

* Committing clang-format changes

* Fixes an issue where H5Pset_fapl_log sefaults when passed an invalid
fapl ID

This was due to a pointer-containing struct being memset after the first
internal API call. If the first call failed, the error condition would
check if the pointer was not NULL and then attempt to free it if not.
This would lead to the freeing of a wild pointer if an invalid fapl ID
were passed in.

This was fixed by reordering the memset and adding a test to ensure the
problem stays fixed.

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Conflicts:
	release_docs/RELEASE.txt

* Fixes crashes when size_hint > UINT32_MAX is passed to H5Gcreate1 (#611)

* Committing clang-format changes

* Fixes incorrect size_hint handling in H5Gcreate1

* Updates the size hint type for group creation

* Updates the RELEASE.txt note

* Revert "Updates the RELEASE.txt note"

This reverts commit 3df386acca.

* Reverts previous behavior to use a uint32_t struct field

* Updates RELEASE.txt

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Conflicts:
	src/H5Gdeprec.c

* Adds __STDC_FORMAT_MACROS before including inttypes.h w/ C++ (#726)

* Adds __STDC_FORMAT_MACROS before including inttypes.h w/ C++

Allows C++ library to be built on older versions of gcc.

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Conflicts:
	src/H5public.h

* Remove conflicts from RELEASE.txt

* Always include inttypes.h

* Moves H5PacketTable default ctor inside source file (#731)

* Remove private H5_GCC_DIAG_OFF/ON from standalone program (#734)

* Fixes C++ warnings when passing hsize_t values to printf in test code (#745)

* Squashed commit of the following:

commit 1aa2c3421b
Author: Larry Knox <lrknox@hdfgroup.org>
Date:   Sun Jul 25 21:20:20 2021 -0500

    Merge issue 839 develop PRs to hdf5 1 10 - round 2 (#852)

    * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
    maintain binary compatibility.

    * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

    * Removes gratuitous (double)x.yF casts (#632)

    * Committing clang-format changes

    * Removes gratuitous (double)x.yF casts

    * Committing clang-format changes

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Cleans up a const warning left over from previous constification (#633)

    * Committing clang-format changes

    * Adds consts to a few global variables

    * Cleans up a const warning left over from previous constification

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Purges UFAIL from the library (#637)

    * Committing clang-format changes

    * Purges UFAIL from the library

    * H5HL_insert change requested in PR

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Bmr dev hdffv 11223 (#640)

    * Fixed HDFFV-11223 (CVE-2018-14460)

    Description
        - Added checks against buffer size to prevent segfault, in case of data
          corruption, for sdim->size and sdim->max.
        - Renamed data files in an existing test to shorten their length
          as agreed with other developers previously.
    Platforms tested:
        Linux/64 (jelly)

    * Committing clang-format changes

    * Updated for test files

    * Updated for HDFFV-11223

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    * Restore "error:" in line 2666.

    * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

    This reverts commit 426b504848.

    * Snapshot version 1.10 release 8-1. Update version to 1.10.8-2.

    Squashed commit of the following:

    commit 60734e63fe
    Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com>
    Date:   Thu Jun 24 14:20:39 2021 -0500

        Hdf5 1 10 Fix tools test (#796)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        * Add known problem

        * Use only core library for testing dynamic plugins.

        CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit bfb780a444
    Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com>
    Date:   Wed Jun 23 14:11:46 2021 -0500

        Hdf5 1 10 Release Note (#786)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        * Add known problem

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 9f50407368
    Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com>
    Date:   Tue Jun 22 07:03:26 2021 -0500

        Hdf5 1 10 Update missing release note info. (#778)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        * Update missing release note info.

        * Update code owners

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 2e80c9cdec
    Author: Dana Robinson <43805+derobins@users.noreply.github.com>
    Date:   Fri Jun 18 06:42:23 2021 -0700

        Brings hash table IDs feature from develop/1.12 (#768)

        * Brings updated tid test from develop

        * Adds empty H5Iint.c and H5Idbg.c files

        * H5I renaming to match 1.12/develop

        * Splits off H5I debug code to H5Idbg.c

        * Splits internal H5I.c functionality to H5Iint.c

        * Header cleanup

        * More renaming cleanup to match develop/1.12

        * Adds "save last ID" optimization

        * Adds uthash.h

        * Adds hash table IDs from develop/1.12

        * Committing clang-format changes

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 1e29bcbfe2
    Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com>
    Date:   Thu Jun 17 11:21:43 2021 -0500

        Hdf5 1 10 Fix cmake configure path (#762)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        * Fix cmake configure path

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 475cdaf431
    Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com>
    Date:   Wed Jun 16 15:45:58 2021 -0500

        Hdf5 1 10 merge warnings changes (#756)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        * Merge warnings files fixes from develop

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit e25980e7f3
    Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com>
    Date:   Tue Jun 8 14:37:13 2021 -0500

        Hdf5 1 10 merges of CMake changes (#738)

        * HDFFV-10865 - merge from dev, HDFArray perf fix.

        * Remove duplicate setting

        * Whitespace changes after clang format

        * Undo version 11 clang format changes

        * Merge CMake changes from develop

        * test testing script merge from develop

        * Update supported platforms

        * PR#3 merge from develop

        * Merge gcc 10 diagnostics option from develop

        * Merge #318 OSX changes from develop

        * Merge small changes from develop

        * Minor non-space formatting changes

        * #386 copyright corrections for java folder

        * Merges from develop

        #358 patches from vtk
        #361 fix header guard spelling

        * Merge updates

        #358 patches from vtk
        #361 fix header guard spelling

        * format fix

        * Fix missing underscore and make H5public.h closer to dev

        * Merges from develop

        #340 clang -Wformat-security warnings
        #360 Fixed uninitialized warnings
        header guard underscore cleanup
        JNI cleanup

        * format alignment

        * Add missing test ref file

        * Merge #380 from develop

        * Finish java merges from develop

        * Fix java issues with tests and javadoc

        * Correct use of attribute access plist

        * Remove debug code

        * Remove unused variable

        * Change file access to read only for java tests

        * Split clang format operations.

        * More javadoc comments

        * Remove pre-split setting

        * format source

        * Change windows TS to use older VS.

        * Mostly all javadoc fixes, one argument rename.

        * synch file

        * Merge of long double fix and compiler flags

        * HDFFV-11229 merge changes from develop

        * HDFFV-11229 correct test script

        * HDFFV-11229 update autotools test script for two ref files

        * HDFFV-11229 merge dev changes for long double display in tools

        * Committing clang-format changes

        * minor whitespace

        * remove unneeded macro

        * Committing clang-format changes

        * Add "option" command for clang options

        * Rework CMake add_custom to use the BYPRODUCTS argument

        Update pkgconfig scripts for parallel builds.
        Fix install COPYING file reference.
        Remove unused round defines.
        Change CMake default setting of BUILD_CPP to off.

        * Fortran target depends

        * Remove incorrect source attribute

        * Revert define removal

        * printf specifiers and VS2015 min changes

        * Committing clang-format changes

        * Add time struct

        * TRILAB-227 and tools debug merges from develop

        * Merge various changes from dev

        * Issue #669 remove version from pkgcfg filename

        * remove version from h5cc script

        * doxygen changes merged from develop

        * Committing clang-format changes

        * Merge CMake fortran ninja changes from dev

        * Enable fortran to gcc yaml

        * Refactor Fortran CMake config tests and CMake test args

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    commit 061b23ac00
    Author: Larry Knox <lrknox@hdfgroup.org>
    Date:   Thu Jun 3 16:07:23 2021 -0500

        Partial merge issue #642 develop branch PRs to Hdf5 1 10 (#718)

        * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
        maintain binary compatibility.

        * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

        * Removes gratuitous (double)x.yF casts (#632)

        * Committing clang-format changes

        * Removes gratuitous (double)x.yF casts

        * Committing clang-format changes

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Cleans up a const warning left over from previous constification (#633)

        * Committing clang-format changes

        * Adds consts to a few global variables

        * Cleans up a const warning left over from previous constification

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Purges UFAIL from the library (#637)

        * Committing clang-format changes

        * Purges UFAIL from the library

        * H5HL_insert change requested in PR

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Bmr dev hdffv 11223 (#640)

        * Fixed HDFFV-11223 (CVE-2018-14460)

        Description
            - Added checks against buffer size to prevent segfault, in case of data
              corruption, for sdim->size and sdim->max.
            - Renamed data files in an existing test to shorten their length
              as agreed with other developers previously.
        Platforms tested:
            Linux/64 (jelly)

        * Committing clang-format changes

        * Updated for test files

        * Updated for HDFFV-11223

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Committing clang-format changes

        * Restore "error:" in line 2666.

        * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

        This reverts commit 426b504848.

        Co-authored-by: jhendersonHDF <jhenderson@hdfgroup.org>
        Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
        Co-authored-by: bmribler <39579120+bmribler@users.noreply.github.com>

    * (fix) Segmentation fault when using a compound type. (#143)

    * (fix) Segmentation fault when using a compound type.

    In the case when a compounded attribute is written to dataset
    followed by writing the data with a data transform function
    to the dataset will result in a segmentation fault. It turns out
    the data is classified as compounded while it is not. Now, the
    state is always reset first to not compounded followed by the
    existing check if the variable is compounded.

    * (fix) Removed undesired comment lines.

    * (fix) Segmentation fault when using a compound type: added test.

    * (fix) Added the missing cmpd_transform.c file to MANIFEST.

    * (fix) cmpd_dtransform test: autotools and source header.

    Added the cmp_dtransform test to the autotools configuration and
    updated the HDF Group copyright header.

    Co-authored-by: Jan-Willem Blokland <Jan-Willem.Blokland@Shell.com>

    * (fix) H5Z_xform_create function and scientific notation (#144)

    * (fix) H5Z_xform_create function and scientific notation

    Implemented a more sophisticated check to support scientific notation
    in the expression of the H5Zset_data_transform function.

    * (fix) H5Z_xform_create and scientific notation: Added test.

    Added a test to demonstrate that the parsing of expression
    which includes scientific notation works correctly. Improved
    inline comment.

    Co-authored-by: Jan-Willem Blokland <Jan-Willem.Blokland@Shell.com>

    * Adds const to a few global variables (#623)

    * Committing clang-format changes

    * Adds consts to a few global variables

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Made private my_yyinput function static (#618)

    This prevents it being exported as a public symbol.

    * Reduces overly-pedantic casting in the public headers (#644)

    * Committing clang-format changes

    * Fixes overly pedantic casting in public headers

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Use internal version of H5Eprint2 to avoid possible stack overflow (#661)

    * Fixes for a couple of trivial warnings (#676)

    * Committing clang-format changes

    * Trivial warning fixes:

    * Removes an unused done target in H5Tbit.c
    * Add (void) to quiet "ignored return value" warnings in the generators
      (which generally ignore errors)

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Removes alternative function enter/leave macro scheme (#678)

    * Committing clang-format changes

    * Converted BEGIN_FUNC, etc. macros to FUNC_ENTER

    * Rips out the BEGIN_FUNC, etc. macros

    * Removes 'end if', etc. comments from H5HL package

    * Committing clang-format changes

    * Fixes an H5EA iterate issue

    * Fixes an issue in the H5FA iterator code

    * Further cleanup in bin/trace after macro removal

    * Iterator changes in H5EA and H5FA

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Various CMake changes (#679)

    * Committing clang-format changes

    * Several CMake updates:

    * Removes unused HDF5_ENABLE_HSIZET
    * Switches TEST_SHELL_SCRIPTS to ON
    * Sets SH_PROGRAM to bash instead of sh

    * Set default build type back to RelWithDebInfo

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Revert "Removes alternative function enter/leave macro scheme (#678)"

    This reverts commit edddb11b79.

    * err_compat test cleanup (#681)

    * Committing clang-format changes

    * Cleans up err_compat test and output

    * Formatted source

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Sets the memory alloc sanity check option to disabled in autotools (#686)

    * Revert "Sets the memory alloc sanity check option to disabled in autotools (#686)"

    This reverts commit 652ffca586.

    (Only for release branch).

    * Removes alternative function enter/leave macro scheme (#678)

    * Committing clang-format changes

    * Converted BEGIN_FUNC, etc. macros to FUNC_ENTER

    * Rips out the BEGIN_FUNC, etc. macros

    * Removes 'end if', etc. comments from H5HL package

    * Committing clang-format changes

    * Fixes an H5EA iterate issue

    * Fixes an issue in the H5FA iterator code

    * Further cleanup in bin/trace after macro removal

    * Iterator changes in H5EA and H5FA

    Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

    * Committing clang-format changes

    * Squashed commit of the following:

    commit e2578640fe
    Author: Larry Knox <lrknox@hdfgroup.org>
    Date:   Fri Jul 16 10:57:51 2021 -0500

        Merge issue 839 changes to hdf5 1 10 (#841)

        * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
        maintain binary compatibility.

        * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

        * Removes gratuitous (double)x.yF casts (#632)

        * Committing clang-format changes

        * Removes gratuitous (double)x.yF casts

        * Committing clang-format changes

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Cleans up a const warning left over from previous constification (#633)

        * Committing clang-format changes

        * Adds consts to a few global variables

        * Cleans up a const warning left over from previous constification

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Purges UFAIL from the library (#637)

        * Committing clang-format changes

        * Purges UFAIL from the library

        * H5HL_insert change requested in PR

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Bmr dev hdffv 11223 (#640)

        * Fixed HDFFV-11223 (CVE-2018-14460)

        Description
            - Added checks against buffer size to prevent segfault, in case of data
              corruption, for sdim->size and sdim->max.
            - Renamed data files in an existing test to shorten their length
              as agreed with other developers previously.
        Platforms tested:
            Linux/64 (jelly)

        * Committing clang-format changes

        * Updated for test files

        * Updated for HDFFV-11223

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Committing clang-format changes

        * Restore "error:" in line 2666.

        * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

        This reverts commit 426b504848.

        * Snapshot version 1.10 release 8-1. Update version to 1.10.8-2.

        Squashed commit of the following:

        commit 60734e63fe
        Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com>
        Date:   Thu Jun 24 14:20:39 2021 -0500

            Hdf5 1 10 Fix tools test (#796)

            * HDFFV-10865 - merge from dev, HDFArray perf fix.

            * Remove duplicate setting

            * Whitespace changes after clang format

            * Undo version 11 clang format changes

            * Merge CMake changes from develop

            * test testing script merge from develop

            * Update supported platforms

            * PR#3 merge from develop

            * Merge gcc 10 diagnostics option from develop

            * Merge #318 OSX changes from develop

            * Merge small changes from develop

            * Minor non-space formatting changes

            * #386 copyright corrections for java folder

            * Merges from develop

            #358 patches from vtk
            #361 fix header guard spelling

            * Merge updates

            #358 patches from vtk
            #361 fix header guard spelling

            * format fix

            * Fix missing underscore and make H5public.h closer to dev

            * Merges from develop

            #340 clang -Wformat-security warnings
            #360 Fixed uninitialized warnings
            header guard underscore cleanup
            JNI cleanup

            * format alignment

            * Add missing test ref file

            * Merge #380 from develop

            * Finish java merges from develop

            * Fix java issues with tests and javadoc

            * Correct use of attribute access plist

            * Remove debug code

            * Remove unused variable

            * Change file access to read only for java tests

            * Split clang format operations.

            * More javadoc comments

            * Remove pre-split setting

            * format source

            * Change windows TS to use older VS.

            * Mostly all javadoc fixes, one argument rename.

            * synch file

            * Merge of long double fix and compiler flags

            * HDFFV-11229 merge changes from develop

            * HDFFV-11229 correct test script

            * HDFFV-11229 update autotools test script for two ref files

            * HDFFV-11229 merge dev changes for long double display in tools

            * Committing clang-format changes

            * minor whitespace

            * remove unneeded macro

            * Committing clang-format changes

            * Add "option" command for clang options

            * Rework CMake add_custom to use the BYPRODUCTS argument

            Update pkgconfig scripts for parallel builds.
            Fix install COPYING file reference.
            Remove unused round defines.
            Change CMake default setting of BUILD_CPP to off.

            * Fortran target depends

            * Remove incorrect source attribute

            * Revert define removal

            * printf specifiers and VS2015 min changes

            * Committing clang-format changes

            * Add time struct

            * TRILAB-227 and tools debug merges from develop

            * Merge various changes from dev

            * Issue #669 remove version from pkgcfg filename

            * remove version from h5cc script

            * doxygen changes merged from develop

            * Committing clang-format changes

            * Merge CMake fortran ninja changes from dev

            * Enable fortran to gcc yaml

            * Refactor Fortran CMake config tests and CMake test args

            * Merge warnings files fixes from develop

            * Fix cmake configure path

            * Update missing release note info.

            * Update code owners

            * Add known problem

            * Use only core library for testing dynamic plugins.

            CMake uses H5_HAVE_DIRECT instead of DIRECT_VFD

            Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        commit bfb780a444
        Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com>
        Date:   Wed Jun 23 14:11:46 2021 -0500

            Hdf5 1 10 Release Note (#786)

            * HDFFV-10865 - merge from dev, HDFArray perf fix.

            * Remove duplicate setting

            * Whitespace changes after clang format

            * Undo version 11 clang format changes

            * Merge CMake changes from develop

            * test testing script merge from develop

            * Update supported platforms

            * PR#3 merge from develop

            * Merge gcc 10 diagnostics option from develop

            * Merge #318 OSX changes from develop

            * Merge small changes from develop

            * Minor non-space formatting changes

            * #386 copyright corrections for java folder

            * Merges from develop

            #358 patches from vtk
            #361 fix header guard spelling

            * Merge updates

            #358 patches from vtk
            #361 fix header guard spelling

            * format fix

            * Fix missing underscore and make H5public.h closer to dev

            * Merges from develop

            #340 clang -Wformat-security warnings
            #360 Fixed uninitialized warnings
            header guard underscore cleanup
            JNI cleanup

            * format alignment

            * Add missing test ref file

            * Merge #380 from develop

            * Finish java merges from develop

            * Fix java issues with tests and javadoc

            * Correct use of attribute access plist

            * Remove debug code

            * Remove unused variable

            * Change file access to read only for java tests

            * Split clang format operations.

            * More javadoc comments

            * Remove pre-split setting

            * format source

            * Change windows TS to use older VS.

            * Mostly all javadoc fixes, one argument rename.

            * synch file

            * Merge of long double fix and compiler flags

            * HDFFV-11229 merge changes from develop

            * HDFFV-11229 correct test script

            * HDFFV-11229 update autotools test script for two ref files

            * HDFFV-11229 merge dev changes for long double display in tools

            * Committing clang-format changes

            * minor whitespace

            * remove unneeded macro

            * Committing clang-format changes

            * Add "option" command for clang options

            * Rework CMake add_custom to use the BYPRODUCTS argument

            Update pkgconfig scripts for parallel builds.
            Fix install COPYING file reference.
            Remove unused round defines.
            Change CMake default setting of BUILD_CPP to off.

            * Fortran target depends

            * Remove incorrect source attribute

            * Revert define removal

            * printf specifiers and VS2015 min changes

            * Committing clang-format changes

            * Add time struct

            * TRILAB-227 and tools debug merges from develop

            * Merge various changes from dev

            * Issue #669 remove version from pkgcfg filename

            * remove version from h5cc script

            * doxygen changes merged from develop

            * Committing clang-format changes

            * Merge CMake fortran ninja changes from dev

            * Enable fortran to gcc yaml

            * Refactor Fortran CMake config tests and CMake test args

            * Merge warnings files fixes from develop

            * Fix cmake configure path

            * Update missing release note info.

            * Update code owners

            * Add known problem

            Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        commit 9f50407368
        Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com>
        Date:   Tue Jun 22 07:03:26 2021 -0500

            Hdf5 1 10 Update missing release note info. (#778)

            * HDFFV-10865 - merge from dev, HDFArray perf fix.

            * Remove duplicate setting

            * Whitespace changes after clang format

            * Undo version 11 clang format changes

            * Merge CMake changes from develop

            * test testing script merge from develop

            * Update supported platforms

            * PR#3 merge from develop

            * Merge gcc 10 diagnostics option from develop

            * Merge #318 OSX changes from develop

            * Merge small changes from develop

            * Minor non-space formatting changes

            * #386 copyright corrections for java folder

            * Merges from develop

            #358 patches from vtk
            #361 fix header guard spelling

            * Merge updates

            #358 patches from vtk
            #361 fix header guard spelling

            * format fix

            * Fix missing underscore and make H5public.h closer to dev

            * Merges from develop

            #340 clang -Wformat-security warnings
            #360 Fixed uninitialized warnings
            header guard underscore cleanup
            JNI cleanup

            * format alignment

            * Add missing test ref file

            * Merge #380 from develop

            * Finish java merges from develop

            * Fix java issues with tests and javadoc

            * Correct use of attribute access plist

            * Remove debug code

            * Remove unused variable

            * Change file access to read only for java tests

            * Split clang format operations.

            * More javadoc comments

            * Remove pre-split setting

            * format source

            * Change windows TS to use older VS.

            * Mostly all javadoc fixes, one argument rename.

            * synch file

            * Merge of long double fix and compiler flags

            * HDFFV-11229 merge changes from develop

            * HDFFV-11229 correct test script

            * HDFFV-11229 update autotools test script for two ref files

            * HDFFV-11229 merge dev changes for long double display in tools

            * Committing clang-format changes

            * minor whitespace

            * remove unneeded macro

            * Committing clang-format changes

            * Add "option" command for clang options

            * Rework CMake add_custom to use the BYPRODUCTS argument

            Update pkgconfig scripts for parallel builds.
            Fix install COPYING file reference.
            Remove unused round defines.
            Change CMake default setting of BUILD_CPP to off.

            * Fortran target depends

            * Remove incorrect source attribute

            * Revert define removal

            * printf specifiers and VS2015 min changes

            * Committing clang-format changes

            * Add time struct

            * TRILAB-227 and tools debug merges from develop

            * Merge various changes from dev

            * Issue #669 remove version from pkgcfg filename

            * remove version from h5cc script

            * doxygen changes merged from develop

            * Committing clang-format changes

            * Merge CMake fortran ninja changes from dev

            * Enable fortran to gcc yaml

            * Refactor Fortran CMake config tests and CMake test args

            * Merge warnings files fixes from develop

            * Fix cmake configure path

            * Update missing release note info.

            * Update code owners

            Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        commit 2e80c9cdec
        Author: Dana Robinson <43805+derobins@users.noreply.github.com>
        Date:   Fri Jun 18 06:42:23 2021 -0700

            Brings hash table IDs feature from develop/1.12 (#768)

            * Brings updated tid test from develop

            * Adds empty H5Iint.c and H5Idbg.c files

            * H5I renaming to match 1.12/develop

            * Splits off H5I debug code to H5Idbg.c

            * Splits internal H5I.c functionality to H5Iint.c

            * Header cleanup

            * More renaming cleanup to match develop/1.12

            * Adds "save last ID" optimization

            * Adds uthash.h

            * Adds hash table IDs from develop/1.12

            * Committing clang-format changes

            Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        commit 1e29bcbfe2
        Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com>
        Date:   Thu Jun 17 11:21:43 2021 -0500

            Hdf5 1 10 Fix cmake configure path (#762)

            * HDFFV-10865 - merge from dev, HDFArray perf fix.

            * Remove duplicate setting

            * Whitespace changes after clang format

            * Undo version 11 clang format changes

            * Merge CMake changes from develop

            * test testing script merge from develop

            * Update supported platforms

            * PR#3 merge from develop

            * Merge gcc 10 diagnostics option from develop

            * Merge #318 OSX changes from develop

            * Merge small changes from develop

            * Minor non-space formatting changes

            * #386 copyright corrections for java folder

            * Merges from develop

            #358 patches from vtk
            #361 fix header guard spelling

            * Merge updates

            #358 patches from vtk
            #361 fix header guard spelling

            * format fix

            * Fix missing underscore and make H5public.h closer to dev

            * Merges from develop

            #340 clang -Wformat-security warnings
            #360 Fixed uninitialized warnings
            header guard underscore cleanup
            JNI cleanup

            * format alignment

            * Add missing test ref file

            * Merge #380 from develop

            * Finish java merges from develop

            * Fix java issues with tests and javadoc

            * Correct use of attribute access plist

            * Remove debug code

            * Remove unused variable

            * Change file access to read only for java tests

            * Split clang format operations.

            * More javadoc comments

            * Remove pre-split setting

            * format source

            * Change windows TS to use older VS.

            * Mostly all javadoc fixes, one argument rename.

            * synch file

            * Merge of long double fix and compiler flags

            * HDFFV-11229 merge changes from develop

            * HDFFV-11229 correct test script

            * HDFFV-11229 update autotools test script for two ref files

            * HDFFV-11229 merge dev changes for long double display in tools

            * Committing clang-format changes

            * minor whitespace

            * remove unneeded macro

            * Committing clang-format changes

            * Add "option" command for clang options

            * Rework CMake add_custom to use the BYPRODUCTS argument

            Update pkgconfig scripts for parallel builds.
            Fix install COPYING file reference.
            Remove unused round defines.
            Change CMake default setting of BUILD_CPP to off.

            * Fortran target depends

            * Remove incorrect source attribute

            * Revert define removal

            * printf specifiers and VS2015 min changes

            * Committing clang-format changes

            * Add time struct

            * TRILAB-227 and tools debug merges from develop

            * Merge various changes from dev

            * Issue #669 remove version from pkgcfg filename

            * remove version from h5cc script

            * doxygen changes merged from develop

            * Committing clang-format changes

            * Merge CMake fortran ninja changes from dev

            * Enable fortran to gcc yaml

            * Refactor Fortran CMake config tests and CMake test args

            * Merge warnings files fixes from develop

            * Fix cmake configure path

            Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        commit 475cdaf431
        Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com>
        Date:   Wed Jun 16 15:45:58 2021 -0500

            Hdf5 1 10 merge warnings changes (#756)

            * HDFFV-10865 - merge from dev, HDFArray perf fix.

            * Remove duplicate setting

            * Whitespace changes after clang format

            * Undo version 11 clang format changes

            * Merge CMake changes from develop

            * test testing script merge from develop

            * Update supported platforms

            * PR#3 merge from develop

            * Merge gcc 10 diagnostics option from develop

            * Merge #318 OSX changes from develop

            * Merge small changes from develop

            * Minor non-space formatting changes

            * #386 copyright corrections for java folder

            * Merges from develop

            #358 patches from vtk
            #361 fix header guard spelling

            * Merge updates

            #358 patches from vtk
            #361 fix header guard spelling

            * format fix

            * Fix missing underscore and make H5public.h closer to dev

            * Merges from develop

            #340 clang -Wformat-security warnings
            #360 Fixed uninitialized warnings
            header guard underscore cleanup
            JNI cleanup

            * format alignment

            * Add missing test ref file

            * Merge #380 from develop

            * Finish java merges from develop

            * Fix java issues with tests and javadoc

            * Correct use of attribute access plist

            * Remove debug code

            * Remove unused variable

            * Change file access to read only for java tests

            * Split clang format operations.

            * More javadoc comments

            * Remove pre-split setting

            * format source

            * Change windows TS to use older VS.

            * Mostly all javadoc fixes, one argument rename.

            * synch file

            * Merge of long double fix and compiler flags

            * HDFFV-11229 merge changes from develop

            * HDFFV-11229 correct test script

            * HDFFV-11229 update autotools test script for two ref files

            * HDFFV-11229 merge dev changes for long double display in tools

            * Committing clang-format changes

            * minor whitespace

            * remove unneeded macro

            * Committing clang-format changes

            * Add "option" command for clang options

            * Rework CMake add_custom to use the BYPRODUCTS argument

            Update pkgconfig scripts for parallel builds.
            Fix install COPYING file reference.
            Remove unused round defines.
            Change CMake default setting of BUILD_CPP to off.

            * Fortran target depends

            * Remove incorrect source attribute

            * Revert define removal

            * printf specifiers and VS2015 min changes

            * Committing clang-format changes

            * Add time struct

            * TRILAB-227 and tools debug merges from develop

            * Merge various changes from dev

            * Issue #669 remove version from pkgcfg filename

            * remove version from h5cc script

            * doxygen changes merged from develop

            * Committing clang-format changes

            * Merge CMake fortran ninja changes from dev

            * Enable fortran to gcc yaml

            * Refactor Fortran CMake config tests and CMake test args

            * Merge warnings files fixes from develop

            Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        commit e25980e7f3
        Author: Allen Byrne <50328838+byrnHDF@users.noreply.github.com>
        Date:   Tue Jun 8 14:37:13 2021 -0500

            Hdf5 1 10 merges of CMake changes (#738)

            * HDFFV-10865 - merge from dev, HDFArray perf fix.

            * Remove duplicate setting

            * Whitespace changes after clang format

            * Undo version 11 clang format changes

            * Merge CMake changes from develop

            * test testing script merge from develop

            * Update supported platforms

            * PR#3 merge from develop

            * Merge gcc 10 diagnostics option from develop

            * Merge #318 OSX changes from develop

            * Merge small changes from develop

            * Minor non-space formatting changes

            * #386 copyright corrections for java folder

            * Merges from develop

            #358 patches from vtk
            #361 fix header guard spelling

            * Merge updates

            #358 patches from vtk
            #361 fix header guard spelling

            * format fix

            * Fix missing underscore and make H5public.h closer to dev

            * Merges from develop

            #340 clang -Wformat-security warnings
            #360 Fixed uninitialized warnings
            header guard underscore cleanup
            JNI cleanup

            * format alignment

            * Add missing test ref file

            * Merge #380 from develop

            * Finish java merges from develop

            * Fix java issues with tests and javadoc

            * Correct use of attribute access plist

            * Remove debug code

            * Remove unused variable

            * Change file access to read only for java tests

            * Split clang format operations.

            * More javadoc comments

            * Remove pre-split setting

            * format source

            * Change windows TS to use older VS.

            * Mostly all javadoc fixes, one argument rename.

            * synch file

            * Merge of long double fix and compiler flags

            * HDFFV-11229 merge changes from develop

            * HDFFV-11229 correct test script

            * HDFFV-11229 update autotools test script for two ref files

            * HDFFV-11229 merge dev changes for long double display in tools

            * Committing clang-format changes

            * minor whitespace

            * remove unneeded macro

            * Committing clang-format changes

            * Add "option" command for clang options

            * Rework CMake add_custom to use the BYPRODUCTS argument

            Update pkgconfig scripts for parallel builds.
            Fix install COPYING file reference.
            Remove unused round defines.
            Change CMake default setting of BUILD_CPP to off.

            * Fortran target depends

            * Remove incorrect source attribute

            * Revert define removal

            * printf specifiers and VS2015 min changes

            * Committing clang-format changes

            * Add time struct

            * TRILAB-227 and tools debug merges from develop

            * Merge various changes from dev

            * Issue #669 remove version from pkgcfg filename

            * remove version from h5cc script

            * doxygen changes merged from develop

            * Committing clang-format changes

            * Merge CMake fortran ninja changes from dev

            * Enable fortran to gcc yaml

            * Refactor Fortran CMake config tests and CMake test args

            Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        commit 061b23ac00
        Author: Larry Knox <lrknox@hdfgroup.org>
        Date:   Thu Jun 3 16:07:23 2021 -0500

            Partial merge issue #642 develop branch PRs to Hdf5 1 10 (#718)

            * Revert addition of & to 2 parameters in DSetCreatPropList::setVirtual to
            maintain binary compatibility.

            * Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)

            * Removes gratuitous (double)x.yF casts (#632)

            * Committing clang-format changes

            * Removes gratuitous (double)x.yF casts

            * Committing clang-format changes

            Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

            * Cleans up a const warning left over from previous constification (#633)

            * Committing clang-format changes

            * Adds consts to a few global variables

            * Cleans up a const warning left over from previous constification

            Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

            * Purges UFAIL from the library (#637)

            * Committing clang-format changes

            * Purges UFAIL from the library

            * H5HL_insert change requested in PR

            Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

            * Bmr dev hdffv 11223 (#640)

            * Fixed HDFFV-11223 (CVE-2018-14460)

            Description
                - Added checks against buffer size to prevent segfault, in case of data
                  corruption, for sdim->size and sdim->max.
                - Renamed data files in an existing test to shorten their length
                  as agreed with other developers previously.
            Platforms tested:
                Linux/64 (jelly)

            * Committing clang-format changes

            * Updated for test files

            * Updated for HDFFV-11223

            Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

            * Committing clang-format changes

            * Restore "error:" in line 2666.

            * Revert "Fix H5Eget_auto2/H5Eauto_is_v2 to not clear error stack (#625)"

            This reverts commit 426b504848.

            Co-authored-by: jhendersonHDF <jhenderson@hdfgroup.org>
            Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
            Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
            Co-authored-by: bmribler <39579120+bmribler@users.noreply.github.com>

        * (fix) Segmentation fault when using a compound type. (#143)

        * (fix) Segmentation fault when using a compound type.

        In the case when a compounded attribute is written to dataset
        followed by writing the data with a data transform function
        to the dataset will result in a segmentation fault. It turns out
        the data is classified as compounded while it is not. Now, the
        state is always reset first to not compounded followed by the
        existing check if the variable is compounded.

        * (fix) Removed undesired comment lines.

        * (fix) Segmentation fault when using a compound type: added test.

        * (fix) Added the missing cmpd_transform.c file to MANIFEST.

        * (fix) cmpd_dtransform test: autotools and source header.

        Added the cmp_dtransform test to the autotools configuration and
        updated the HDF Group copyright header.

        Co-authored-by: Jan-Willem Blokland <Jan-Willem.Blokland@Shell.com>

        * (fix) H5Z_xform_create function and scientific notation (#144)

        * (fix) H5Z_xform_create function and scientific notation

        Implemented a more sophisticated check to support scientific notation
        in the expression of the H5Zset_data_transform function.

        * (fix) H5Z_xform_create and scientific notation: Added test.

        Added a test to demonstrate that the parsing of expression
        which includes scientific notation works correctly. Improved
        inline comment.

        Co-authored-by: Jan-Willem Blokland <Jan-Willem.Blokland@Shell.com>

        * Adds const to a few global variables (#623)

        * Committing clang-format changes

        * Adds consts to a few global variables

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Made private my_yyinput function static (#618)

        This prevents it being exported as a public symbol.

        * Reduces overly-pedantic casting in the public headers (#644)

        * Committing clang-format changes

        * Fixes overly pedantic casting in public headers

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Use internal version of H5Eprint2 to avoid possible stack overflow (#661)

        * Fixes for a couple of trivial warnings (#676)

        * Committing clang-format changes

        * Trivial warning fixes:

        * Removes an unused done target in H5Tbit.c
        * Add (void) to quiet "ignored return value" warnings in the generators
          (which generally ignore errors)

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Removes alternative function enter/leave macro scheme (#678)

        * Committing clang-format changes

        * Converted BEGIN_FUNC, etc. macros to FUNC_ENTER

        * Rips out the BEGIN_FUNC, etc. macros

        * Removes 'end if', etc. comments from H5HL package

        * Committing clang-format changes

        * Fixes an H5EA iterate issue

        * Fixes an issue in the H5FA iterator code

        * Further cleanup in bin/trace after macro removal

        * Iterator changes in H5EA and H5FA

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Various CMake changes (#679)

        * Committing clang-format changes

        * Several CMake updates:

        * Removes unused HDF5_ENABLE_HSIZET
        * Switches TEST_SHELL_SCRIPTS to ON
        * Sets SH_PROGRAM to bash instead of sh

        * Set default build type back to RelWithDebInfo

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Revert "Removes alternative function enter/leave macro scheme (#678)"

        This reverts commit edddb11b79.

        * err_compat test cleanup (#681)

        * Committing clang-format changes

        * Cleans up err_compat test and output

        * Formatted source

        Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

        * Sets the memory alloc sanity check option to disabled in autotools (#686)

        * Revert "Sets the memory alloc sanity check option to disabled in autotools (#686)"

        This reverts commit 652ffca586.

        (Only for release branch).

        * Removes alternative function enter/leave macro scheme (#678)

        * Committing clang-for…

* Normalization of H5_nanosleep() with VFD SWMR branch (#746)

* Normalization of H5_nanosleep() with VFD SWMR branch

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Fixes some H5SL include statements (#758)

* Fixes an array issue flagged by PGI in a C++ test (#763)

* Fixes non-C99 format strings in tarray test code (#766)

* Removes checks and work-arounds for strtoll and strtoull (#769)

* Removes checks and work-arounds for strtoll and strtoull

* Removes CMake checks for strtoll and strtoull

* Removes checks for (v)snprintf, which are C99 (#772)

* Removes outdated checks for ways inline might be defined (#781)

These are obsolete now that we require C99.

* Removes checks for system(), which is C89/90 (#782)

* Cleans up some POSIX header bits in H5private.h (#783)

* Further simplifies Autotools type size checks (#789)

Also fixes an issue where clock_gettime and difftime are not detected
due to earlier simplifications of this code.

* Removes ancient Autotools cruft (#790)

* Normalization of CMake H5pubconf.h with Autotools (#791)

Mostly just moving things around and changing the comments to keep the
delta small. The only symbol change is that for curl/curl.h which I
changed to H5_HAVE_CURL_CURL_H to match the Autotools. This symbol
is not used in the library and is just an artifact of the checks.

* Update initialization of table_id in PacketTable Null constructor for
non c++11 clang compiler.

Co-authored-by: jhendersonHDF <jhenderson@hdfgroup.org>
Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: bmribler <39579120+bmribler@users.noreply.github.com>
Co-authored-by: Jan-Willem Blokland <J.W.S.Blokland@XS4All.nl>
Co-authored-by: Jan-Willem Blokland <Jan-Willem.Blokland@Shell.com>
Co-authored-by: Sean McBride <sean@rogue-research.com>
Co-authored-by: Scot Breitenfeld <brtnfld@hdfgroup.org>
Co-authored-by: Allen Byrne <50328838+byrnHDF@users.noreply.github.com>
2021-07-26 12:12:50 -05:00
..
2021-05-25 10:03:14 -05:00
2020-07-15 11:27:52 -05:00
2020-09-04 15:46:30 -05:00
2019-06-10 13:16:11 -05:00

@HDF5_PACKAGE_NAME@ version @HDF5_PACKAGE_VERSION_STRING@
------------------------------------------------------------------------------

This directory contains the binary (release) distribution of
@HDF5_PACKAGE_NAME@ @HDF5_PACKAGE_VERSION_MAJOR@ that was compiled on;
    @BINARY_PLATFORM@.

It was built with the following options:
    -- @LIB_TYPE@ C/C++/Fortran libraries
    -- SZIP (encoder enabled) and ZLIB
    -- @LIB_TYPE@ HDF5 tools
    -- Java @Java_VERSION@

The contents of this directory are:

    COPYING                 - Copyright notice
    README.txt              - This file
    @HDF5_PACKAGE_NAME@-@HDF5_PACKAGE_VERSION@-@BINARY_SYSTEM_NAME@.@BINARY_INSTALL_ENDING@    - HDF5 Install Package

This binary was built with the ZLIB and SZIP/Libaec external libraries and are
included for convenience.  Libaec is an unrestricted open-source replacement for SZIP
(version 1.0.4, Encoder ENABLED).

The official ZLIB and SZIP/Libaec pages are at:

    ZLIB: https://git.savannah.gnu.org/cgit/gzip.git/
        https://git.savannah.gnu.org/cgit/gzip.git/tree/COPYING
    SZIP/Libaec: https://gitlab.dkrz.de/k202009/libaec
        https://gitlab.dkrz.de/k202009/libaec/-/blob/master/Copyright.txt


Installation
===========================================================================
1. Execute @HDF5_PACKAGE_NAME@-@HDF5_PACKAGE_VERSION@-@BINARY_SYSTEM_NAME@.@BINARY_INSTALL_ENDING@
2. Follow prompts
===========================================================================

After Installation
===========================================================================
The examples folder, HDF5Examples, located in the
HDF5 install folder, can be built and tested with CMake and the supplied
HDF5_Examples.cmake file. The HDF5_Examples.cmake expects HDF5 to have
been installed in the default location with above compilers (see the
libhdf5.settings file in the lib install folder). Also, the CMake
utility should be installed.

To test the installation with the examples;
    Create a directory to run the examples.
    Copy HDF5Examples folder to this directory.
    Copy CTestScript.cmake to this directory.
    Copy HDF5_Examples.cmake to this directory.
    Copy HDF5_Examples_options.cmake to this directory.
    The default source folder is defined as "HDF5Examples". It can be changed
        with the CTEST_SOURCE_NAME script option.
    The default installation folder is defined as "@CMAKE_INSTALL_PREFIX@".
        It can be changed with the INSTALLDIR script option.
    The default ctest configuration is defined as "Release". It can be changed
        with the CTEST_CONFIGURATION_TYPE script option. Note that this must
        be the same as the value used with the -C command line option.
    The default build configuration is defined to build and use static libraries.
        Shared libraries can be used with the STATICONLYLIBRARIES script option set to "NO".
    Other options can be changed by editing the HDF5_Examples_options.cmake file.

    If the defaults are okay, execute from this directory:
        ctest -S HDF5_Examples.cmake -C Release -V -O test.log
    If the defaults need change, execute from this directory:
        ctest -S HDF5_Examples.cmake,CTEST_SOURCE_NAME=MyExamples,INSTALLDIR=MyLocation -C Release -V -O test.log

When executed, the ctest script will save the results to the log file, test.log, as
indicated by the ctest command. If you wish the to see more build and test information,
add "-VV" to the ctest command. The output should show;
      100% tests passed, 0 tests failed out of 156.

For more information see USING_CMake_Examples.txt in the install folder.
===========================================================================

Documentation for this release can be found at the following URL:
    https://portal.hdfgroup.org/display/support

Bugs should be reported to help@hdfgroup.org.