HDF5 1.12.2 release created April 19, 2022.

* Create hdf5_1_12_2 preparation branch for HDF5 1.12.2 release.
Set version to 1.12.2-3.
Switch default build mode to production for release.
Switch AM_MAINTAINER_MODE to disabled.
Set HDF5_GENERATE_HEADERS to OFF.
Commit Makefile.ins and other generated files for release.

* Update so numbers.

Address codespell errors in files generated by autogen.sh.

.autom4te.cfg

@@ -5,7 +5,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 

.clang-format

@@ -0,0 +1,96 @@
+---
+Language:        Cpp
+BasedOnStyle:  LLVM
+AlignConsecutiveAssignments: true
+#llvm11: AlignConsecutiveBitFields: false
+AlignConsecutiveDeclarations: true
+AlignConsecutiveMacros: true
+#llvm10-11: AlignOperands:   true - Align
+#llvm11: AllowShortEnumsOnASingleLine: true
+AllowShortFunctionsOnASingleLine: None
+AlwaysBreakAfterReturnType: AllDefinitions
+# Can enable the following section when llvm 12.x is out
+#AttributeMacros:
+#  - H5_ATTR_FORMAT
+#  - H5_ATTR_UNUSED
+#  - H5_ATTR_DEPRECATED_USED
+#  - H5_ATTR_NDEBUG_UNUSED
+#  - H5_ATTR_DEBUG_API_USED
+#  - H5_ATTR_PARALLEL_UNUSED
+#  - H5_ATTR_PARALLEL_USED
+#  - H5_ATTR_NORETURN
+#  - H5_ATTR_CONST
+#  - H5_ATTR_PURE
+#  - H5_ATTR_FALLTHROUGH
+BraceWrapping:
+  AfterFunction:   true
+  #llvm10-11: AfterControlStatement: false - Never
+  BeforeCatch:     true
+  BeforeElse:      true
+  #llvm11:   BeforeLambdaBody: false
+  #llvm11:   BeforeWhile:     false
+BreakBeforeBraces: Stroustrup
+BreakAfterJavaFieldAnnotations: true
+BreakStringLiterals: true
+ColumnLimit:     110    # Update $max_trace_macro_line_len in bin/trace also
+ForEachMacros: ['ALL_MEMBERS', 'UNIQUE_MEMBERS']
+IncludeCategories:
+  - Regex:           '^"(llvm|llvm-c|clang|clang-c)/'
+    Priority:        3
+    SortPriority:    0
+  - Regex:           '^(<|"(gtest|gmock|isl|json)/)'
+    Priority:        4
+    SortPriority:    0
+  - Regex:           '.*'
+    Priority:        0
+    SortPriority:    0
+  - Regex:           '^H5*.*'
+    Priority:        1
+    SortPriority:    0
+  - Regex:           'private.*'
+    Priority:        2
+    SortPriority:    0
+IncludeIsMainRegex: '(public)?$'
+IndentCaseLabels: true
+#llvm11: IndentCaseBlocks: false
+IndentGotoLabels: false
+#llvm11: IndentExternBlock: AfterExternBlock
+IndentWidth:     4
+#llvm11: InsertTrailingCommas: None
+MacroBlockBegin: "^BEGIN_FUNC"
+MacroBlockEnd: "^END_FUNC"
+ObjCBlockIndentWidth: 4
+#llvm11: ObjCBreakBeforeNestedBlockParam: true
+ReflowComments:  true
+SortIncludes:    false
+StatementMacros:
+  - FUNC_ENTER_API
+  - FUNC_LEAVE_API
+  - FUNC_ENTER_NOAPI_NOINIT_NOERR
+  - FUNC_LEAVE_NOAPI
+  - H5_BEGIN_TAG
+  - HGOTO_DONE_TAG
+  - H5_END_TAG
+  - HSYS_DONE_ERROR
+  - HSYS_GOTO_ERROR
+  - HDONE_ERROR
+  - HERROR
+  - H5_LEAVE
+  - H5E_PRINTF
+  - H5E_THROW
+  - HGOTO_DONE
+  - HGOTO_ERROR
+  - HMPI_ERROR
+  - HMPI_DONE_ERROR
+  - HMPI_GOTO_ERROR
+  - H5_GCC_DIAG_OFF
+  - H5_GCC_DIAG_ON
+  - CATCH
+#llvm10: TypenameMacros:
+#llvm10:   - STACK_OF
+#llvm10:   - LIST
+#llvm11: WhitespaceSensitiveMacros:
+#llvm11:   - STRINGIZE
+#llvm11:   - PP_STRINGIZE
+...
+

.gitattributes

@@ -192,12 +192,12 @@ java/examples/testfiles/examples.intro.H5_CreateGroup.txt -text
 java/examples/testfiles/examples.intro.H5_CreateGroupAbsoluteRelative.txt -text
 java/examples/testfiles/examples.intro.H5_CreateGroupDataset.txt -text
 java/examples/testfiles/examples.intro.H5_ReadWrite.txt -text
-java/lib/ext/slf4j-nop-1.7.25.jar -text svneol=unset#application/zip
-java/lib/ext/slf4j-simple-1.7.25.jar -text svneol=unset#application/zip
+java/lib/ext/slf4j-nop-1.7.33.jar -text svneol=unset#application/zip
+java/lib/ext/slf4j-simple-1.7.33.jar -text svneol=unset#application/zip
 java/lib/hamcrest-core.jar -text svneol=unset#application/java-archive
 java/lib/junit.jar -text svneol=unset#application/java-archive
 java/lib/simplelogger.properties -text
-java/lib/slf4j-api-1.7.25.jar -text svneol=unset#application/zip
+java/lib/slf4j-api-1.7.33.jar -text svneol=unset#application/zip
 java/src/CMakeLists.txt -text
 java/src/Makefile.am -text
 java/src/hdf/CMakeLists.txt -text
@@ -216,10 +216,10 @@ java/src/hdf/hdf5lib/callbacks/H5D_iterate_cb.java -text
 java/src/hdf/hdf5lib/callbacks/H5D_iterate_t.java -text
 java/src/hdf/hdf5lib/callbacks/H5E_walk_cb.java -text
 java/src/hdf/hdf5lib/callbacks/H5E_walk_t.java -text
-java/src/hdf/hdf5lib/callbacks/H5L_iterate_cb.java -text
 java/src/hdf/hdf5lib/callbacks/H5L_iterate_t.java -text
-java/src/hdf/hdf5lib/callbacks/H5O_iterate_cb.java -text
+java/src/hdf/hdf5lib/callbacks/H5L_iterate_opdata_t.java -text
 java/src/hdf/hdf5lib/callbacks/H5O_iterate_t.java -text
+java/src/hdf/hdf5lib/callbacks/H5O_iterate_opdata_t.java -text
 java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_cb.java -text
 java/src/hdf/hdf5lib/callbacks/H5P_cls_close_func_t.java -text
 java/src/hdf/hdf5lib/callbacks/H5P_cls_copy_func_cb.java -text
@@ -267,6 +267,8 @@ java/src/hdf/hdf5lib/structs/H5G_info_t.java -text
 java/src/hdf/hdf5lib/structs/H5L_info_t.java -text
 java/src/hdf/hdf5lib/structs/H5O_hdr_info_t.java -text
 java/src/hdf/hdf5lib/structs/H5O_info_t.java -text
+java/src/hdf/hdf5lib/structs/H5O_native_info_t.java -text
+java/src/hdf/hdf5lib/structs/H5O_token_t.java -text
 java/src/hdf/hdf5lib/structs/H5_ih_info_t.java -text
 java/src/hdf/overview.html -text
 java/src/jni/CMakeLists.txt -text
@@ -363,6 +365,7 @@ m4/ax_check_rqrd_class.m4 -text
 m4/ax_java_check_class.m4 -text
 m4/ax_java_options.m4 -text
 m4/ax_jni_include_dir.m4 -text
+m4/ax_prog_doxygen.m4 -text
 m4/ax_prog_jar.m4 -text
 m4/ax_prog_java.m4 -text
 m4/ax_prog_java_cc.m4 -text
@@ -782,6 +785,7 @@ tools/testfiles/tints4dimsStride2.ddl -text
 tools/testfiles/tintsattrs.h5 -text svneol=unset#application/x-hdf
 tools/testfiles/tlarge_objname.h5 -text
 tools/testfiles/tldouble.h5 -text
+tools/testfiles/tldouble_scalar.h5 -text
 tools/testfiles/tlonglinks.h5 -text
 tools/testfiles/tloop.h5 -text
 tools/testfiles/tloop2.h5 -text

.github/CODEOWNERS

@@ -0,0 +1,42 @@
+# Lines starting with '#' are comments.
+# Each line is a file pattern followed by one or more owners.
+
+# These owners will be the default owners for everything in the repo.
+*       @lrknox
+
+# Order is important. The last matching pattern has the most precedence.
+# So if a pull request only touches javascript files, only these owners
+# will be requested to review.
+*.cmake           @byrnHDF @ChristopherHogan @gnuoyd @derobins
+CMakeLists.txt    @byrnHDF @ChristopherHogan @gnuoyd @derobins
+CMakeTests.*      @byrnHDF @ChristopherHogan @gnuoyd @derobins
+
+/bin/             @lrknox @ChristopherHogan @gnuoyd @derobins
+
+/c++/             @bmribler @byrnHDF @ChristopherHogan @gnuoyd @derobins
+
+/config/          @lrknox @byrnHDF @ChristopherHogan @gnuoyd @derobins
+
+/doc/             @ChristopherHogan @gnuoyd @jrmainzer
+
+/examples/        @lrknox @bmribler @ChristopherHogan @gnuoyd @derobins
+
+/fortran/         @brtnfld @epourmal
+
+/hl/              @bmribler @byrnHDF @ChristopherHogan @gnuoyd @derobins
+
+/java/            @jhendersonHDF @byrnHDF
+
+/m4/              @lrknox @ChristopherHogan @gnuoyd @derobins
+
+/release_docs/    @lrknox @bmribler @byrnHDF
+
+/src/             @jhendersonHDF @fortnern @soumagne @vchoi-hdfgroup @ChristopherHogan @gnuoyd @derobins @jrmainzer
+
+/test/            @jhendersonHDF @fortnern @soumagne @vchoi-hdfgroup @ChristopherHogan @gnuoyd @derobins @jrmainzer
+
+/testpar/         @jhendersonHDF @ChristopherHogan @gnuoyd @jrmainzer
+
+/tools/           @byrnHDF @bmribler @ChristopherHogan @gnuoyd @derobins
+
+/utils/           @lrknox @byrnHDF @ChristopherHogan @gnuoyd @derobins

.github/FUNDING.yml

@@ -0,0 +1,3 @@
+# These are supported funding model platforms
+
+custom: "https://hdfgroup.org/about-us/donate-to-the-hdf-group/"

.github/workflows/clang-format-check.yml

@@ -0,0 +1,18 @@
+name: clang-format Check
+on:
+  pull_request:
+jobs:
+  formatting-check:
+    name: Formatting Check
+    runs-on: ubuntu-latest
+    if: "!contains(github.event.head_commit.message, 'skip-ci')"
+    steps:
+    - uses: actions/checkout@v2
+    - name: Run clang-format style check for C programs.
+      uses: DoozyX/clang-format-lint-action@v0.11
+      with:
+        source: '.'
+        extensions: 'c,h,cpp,hpp'
+        clangFormatVersion: 10
+        style: file
+        exclude: './config ./hl/src/H5LTanalyze.c ./hl/src/H5LTparse.c ./hl/src/H5LTparse.h ./src/H5Epubgen.h ./src/H5Einit.h ./src/H5Eterm.h ./src/H5Edefin.h ./src/H5version.h ./src/H5overflow.h'

.github/workflows/clang-format-fix.yml

@@ -0,0 +1,25 @@
+name: clang-format Check
+on: 
+  workflow_dispatch:
+  push:
+jobs:
+  formatting-check:
+    name: Formatting Check
+    runs-on: ubuntu-latest
+    if: "!contains(github.event.head_commit.message, 'skip-ci')"
+    steps:
+    - uses: actions/checkout@v2
+    - name: Run clang-format style check for C programs.
+      uses: DoozyX/clang-format-lint-action@v0.11
+      with:
+        source: '.'
+        extensions: 'c,h,cpp,hpp'
+        clangFormatVersion: 10
+        inplace: True
+        style: file
+        exclude: './config ./hl/src/H5LTanalyze.c ./hl/src/H5LTparse.c ./hl/src/H5LTparse.h ./src/H5Epubgen.h ./src/H5Einit.h ./src/H5Eterm.h ./src/H5Edefin.h ./src/H5version.h ./src/H5overflow.h'
+    - uses: EndBug/add-and-commit@v7
+      with:
+          author_name: github-actions
+          author_email: 41898282+github-actions[bot]@users.noreply.github.com
+          message: 'Committing clang-format changes'

.github/workflows/codespell.yml

@@ -0,0 +1,15 @@
+# GitHub Action to automate the identification of common misspellings in text files
+# https://github.com/codespell-project/codespell
+# https://github.com/codespell-project/actions-codespell
+name: codespell
+on: [push, pull_request]
+jobs:
+  codespell:
+    name: Check for spelling errors
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v2
+      - uses: codespell-project/actions-codespell@master
+        with:
+          skip: ./bin/config.guess,./bin/config.sub,./bin/depcomp,./bin/ltmain.sh,./bin/trace,./configure,./hl/tools/h5watch/h5watch.c,./m4/libtool.m4,./tools/test/h5jam/tellub.c
+          ignore_words_list: isnt,inout,nd,parms,parm,ba,offsetP,ser,ois,had,fiter,fo,clude,refere,minnum,offsetp,creat,ans:,eiter,lastr,ans,isn't,ifset,sur,trun,dne,tthe,hda,filname,te,htmp,minnum,ro,oce,ot

.github/workflows/main.yml

@@ -0,0 +1,221 @@
+name: hdf5 dev CI
+
+# Controls when the action will run. Triggers the workflow on push or pull request
+on:
+  workflow_dispatch:
+  push:
+    branches: [ develop, hdf5_1_12, hdf5_1_10, hdf5_1_8 ]
+    paths-ignore:
+    - '.github/**'
+    - 'doc/**'
+    - 'release_docs/**'
+    - 'ACKNOWLEDGEMENTS'
+    - 'COPYING**'
+    - '**.md'
+    
+# A workflow run is made up of one or more jobs that can run sequentially or in parallel
+jobs:
+  # This workflow contains a single job called "build"
+  build:
+    strategy:
+#      fail-fast: false
+      matrix:
+        name: ["Windows Latest MSVC", "Ubuntu Latest GCC", "Ubuntu Debug GCC", "macOS Latest Clang", "Ubuntu Autotools GCC", "Windows TS MSVC", "Ubuntu TS GCC", "TS Debug GCC", "macOS TS Clang", "TS Autotools GCC"]
+        include:
+          - name: "Windows Latest MSVC"
+            artifact: "Windows-MSVC.tar.xz"
+            os: windows-2022
+            build_type: "Release"
+            toolchain: ""
+            cpp: ON
+            fortran: OFF
+            java: ON
+            ts: OFF
+            hl: ON
+            parallel: OFF
+            generator: "-G \"Visual Studio 17 2022\" -A x64"
+          - name: "Ubuntu Latest GCC"
+            artifact: "Linux.tar.xz"
+            os: ubuntu-latest
+            build_type: "Release"
+            cpp: ON
+            fortran: ON
+            java: ON
+            ts: OFF
+            hl: ON
+            parallel: OFF
+            toolchain: "config/toolchain/GCC.cmake"
+            generator: "-G Ninja"
+          - name: "macOS Latest Clang"
+            artifact: "macOS.tar.xz"
+            os: macos-latest
+            build_type: "Release"
+            cpp: ON
+            fortran: OFF
+            java: ON
+            ts: OFF
+            hl: ON
+            parallel: OFF
+            toolchain: "config/toolchain/clang.cmake"
+            generator: "-G Ninja"
+          - name: "Ubuntu Debug GCC"
+            artifact: "LinuxDBG.tar.xz"
+            os: ubuntu-latest
+            build_type: "Debug"
+            cpp: ON
+            fortran: OFF
+            java: OFF
+            ts: OFF
+            hl: ON
+            parallel: OFF
+            toolchain: "config/toolchain/GCC.cmake"
+            generator: "-G Ninja"
+          - name: "Ubuntu Autotools GCC"
+            artifact: "LinuxA.tar.xz"
+            os: ubuntu-latest
+            build_type: "Release"
+            cpp: enable
+            fortran: enable
+            java: enable
+            ts: disable
+            hl: enable
+            parallel: disable
+            toolchain: ""
+            generator: "autogen"
+#  Threadsafe runs
+          - name: "Windows TS MSVC"
+            artifact: "Windows-MSVCTS.tar.xz"
+            os: windows-2019
+            build_type: "Release"
+            toolchain: ""
+            cpp: OFF
+            fortran: OFF
+            java: OFF
+            ts: ON
+            hl: OFF
+            parallel: OFF
+            generator: "-G \"Visual Studio 16 2019\" -A x64"
+          - name: "Ubuntu TS GCC"
+            artifact: "LinuxTS.tar.xz"
+            os: ubuntu-latest
+            build_type: "Release"
+            cpp: OFF
+            fortran: OFF
+            java: OFF
+            ts: ON
+            hl: OFF
+            parallel: OFF
+            toolchain: "config/toolchain/GCC.cmake"
+            generator: "-G Ninja"
+          - name: "macOS TS Clang"
+            artifact: "macOSTS.tar.xz"
+            os: macos-latest
+            build_type: "Release"
+            cpp: OFF
+            fortran: OFF
+            java: OFF
+            ts: ON
+            hl: OFF
+            parallel: OFF
+            toolchain: "config/toolchain/clang.cmake"
+            generator: "-G Ninja"
+          - name: "TS Debug GCC"
+            artifact: "LinuxTSDBG.tar.xz"
+            os: ubuntu-latest
+            build_type: "Debug"
+            cpp: OFF
+            fortran: OFF
+            java: OFF
+            ts: ON
+            hl: OFF
+            parallel: OFF
+            toolchain: "config/toolchain/GCC.cmake"
+            generator: "-G Ninja"
+          - name: "TS Autotools GCC"
+            artifact: "LinuxATS.tar.xz"
+            os: ubuntu-latest
+            build_type: "Release"
+            cpp: disable
+            fortran: disable
+            java: disable
+            ts: enable
+            hl: disable
+            parallel: disable
+            toolchain: ""
+            generator: "autogen"
+#          - name: "Ubuntu Parallel GCC"
+#            artifact: "LinuxPar.tar.xz"
+#            os: ubuntu-latest
+#            build_type: "Release"
+#            cpp: OFF
+#            fortran: OFF
+#            parallel: ON
+#            toolchain: "config/toolchain/GCC.cmake"
+#            generator: "-G Ninja"
+
+    name: ${{ matrix.name }}
+    # The type of runner that the job will run on
+    runs-on: ${{ matrix.os }}
+    if: "!contains(github.event.head_commit.message, 'skip-ci')"
+          
+    # Steps represent a sequence of tasks that will be executed as part of the job
+    steps:
+    - name: Install Dependencies (Linux)
+      run: sudo apt-get install ninja-build
+      if: matrix.os == 'ubuntu-latest'
+    - name: Install Autotools Dependencies (Linux)
+      run: sudo apt-get install automake autoconf libtool libtool-bin
+      if: matrix.generator == 'autogen'
+    - name: Install Dependencies (Windows)
+      run: choco install ninja
+      if: matrix.os == 'windows-latest'
+    - name: Install Dependencies (macOS)
+      run: brew install ninja
+      if: matrix.os == 'macos-latest'
+    - name: Set environment for MSVC (Windows)
+      if:  matrix.os == 'windows-latest'
+      run: |
+        # Set these env vars so cmake picks the correct compiler
+        echo "CXX=cl.exe" >> $GITHUB_ENV
+        echo "CC=cl.exe" >> $GITHUB_ENV
+    
+    # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
+    - name: Get Sources
+      uses: actions/checkout@v2
+
+    - name: Autotools Configure 
+      if: matrix.generator == 'autogen'
+      run: |
+        sh ./autogen.sh
+        mkdir "${{ runner.workspace }}/build"
+        cd "${{ runner.workspace }}/build"
+        $GITHUB_WORKSPACE/configure --enable-shared --${{ matrix.ts }}-threadsafe --${{ matrix.hl }}-hl --${{ matrix.parallel }}-parallel --${{ matrix.cpp }}-cxx --${{ matrix.fortran }}-fortran --${{ matrix.java }}-java
+      shell: bash
+
+    - name: Configure
+      if: matrix.generator != 'autogen'
+      run: |
+        mkdir "${{ runner.workspace }}/build"
+        cd "${{ runner.workspace }}/build"
+        cmake ${{ matrix.generator }} -DCMAKE_BUILD_TYPE=${{ matrix.build_type }} -DCMAKE_TOOLCHAIN_FILE=${{ matrix.toolchain }} -DBUILD_SHARED_LIBS=ON -DHDF5_ENABLE_ALL_WARNINGS=ON -DHDF5_ENABLE_THREADSAFE:BOOL=${{ matrix.ts }} -DHDF5_BUILD_HL_LIB:BOOL=${{ matrix.hl }} -DHDF5_ENABLE_PARALLEL:BOOL=${{ matrix.parallel }} -DHDF5_BUILD_CPP_LIB:BOOL=${{ matrix.cpp }} -DHDF5_BUILD_FORTRAN=${{ matrix.fortran }} -DHDF5_BUILD_JAVA=${{ matrix.java }} $GITHUB_WORKSPACE
+      shell: bash
+
+    - name: Autotools Build
+      if: matrix.generator == 'autogen'
+      run: make
+      working-directory: ${{ runner.workspace }}/build      
+
+    - name: Build
+      if: matrix.generator != 'autogen'
+      run: cmake --build . --config ${{ matrix.build_type }}
+      working-directory: ${{ runner.workspace }}/build      
+
+    - name: Autotools Test
+      if: matrix.generator == 'autogen'
+      run: make check
+      working-directory: ${{ runner.workspace }}/build
+
+    - name: Test
+      if: matrix.generator != 'autogen'
+      run: ctest --build . -C ${{ matrix.build_type }} -V
+      working-directory: ${{ runner.workspace }}/build

.github/workflows/pr-check.yml

@@ -0,0 +1,213 @@
+name: hdf5 dev CI
+
+# Controls when the action will run. Triggers the workflow on push or pull request
+on:
+  pull_request:
+    branches: [ develop, hdf5_1_12, hdf5_1_10, hdf5_1_8 ]
+
+# A workflow run is made up of one or more jobs that can run sequentially or in parallel
+jobs:
+  # This workflow contains a single job called "build"
+  build:
+    strategy:
+#      fail-fast: false
+      matrix:
+        name: ["Windows Latest MSVC", "Ubuntu Latest GCC", "Ubuntu Debug GCC", "macOS Latest Clang", "Ubuntu Autotools GCC", "Windows TS MSVC", "Ubuntu TS GCC", "TS Debug GCC", "macOS TS Clang", "TS Autotools GCC"]
+        include:
+          - name: "Windows Latest MSVC"
+            artifact: "Windows-MSVC.tar.xz"
+            os: windows-2022
+            build_type: "Release"
+            toolchain: ""
+            cpp: ON
+            fortran: OFF
+            java: ON
+            ts: OFF
+            hl: ON
+            parallel: OFF
+            generator: "-G \"Visual Studio 17 2022\" -A x64"
+          - name: "Ubuntu Latest GCC"
+            artifact: "Linux.tar.xz"
+            os: ubuntu-latest
+            build_type: "Release"
+            cpp: ON
+            fortran: ON
+            java: ON
+            ts: OFF
+            hl: ON
+            parallel: OFF
+            toolchain: "config/toolchain/GCC.cmake"
+            generator: "-G Ninja"
+          - name: "macOS Latest Clang"
+            artifact: "macOS.tar.xz"
+            os: macos-latest
+            build_type: "Release"
+            cpp: ON
+            fortran: OFF
+            java: ON
+            ts: OFF
+            hl: ON
+            parallel: OFF
+            toolchain: "config/toolchain/clang.cmake"
+            generator: "-G Ninja"
+          - name: "Ubuntu Debug GCC"
+            artifact: "LinuxDBG.tar.xz"
+            os: ubuntu-latest
+            build_type: "Debug"
+            cpp: ON
+            fortran: OFF
+            java: OFF
+            ts: OFF
+            hl: ON
+            parallel: OFF
+            toolchain: "config/toolchain/GCC.cmake"
+            generator: "-G Ninja"
+          - name: "Ubuntu Autotools GCC"
+            artifact: "LinuxA.tar.xz"
+            os: ubuntu-latest
+            build_type: "Release"
+            cpp: enable
+            fortran: enable
+            java: enable
+            ts: disable
+            hl: enable
+            parallel: disable
+            toolchain: ""
+            generator: "autogen"
+#  Threadsafe runs
+          - name: "Windows TS MSVC"
+            artifact: "Windows-MSVCTS.tar.xz"
+            os: windows-2019
+            build_type: "Release"
+            toolchain: ""
+            cpp: OFF
+            fortran: OFF
+            java: OFF
+            ts: ON
+            hl: OFF
+            parallel: OFF
+            generator: "-G \"Visual Studio 16 2019\" -A x64"
+          - name: "Ubuntu TS GCC"
+            artifact: "LinuxTS.tar.xz"
+            os: ubuntu-latest
+            build_type: "Release"
+            cpp: OFF
+            fortran: OFF
+            java: OFF
+            ts: ON
+            hl: OFF
+            parallel: OFF
+            toolchain: "config/toolchain/GCC.cmake"
+            generator: "-G Ninja"
+          - name: "macOS TS Clang"
+            artifact: "macOSTS.tar.xz"
+            os: macos-latest
+            build_type: "Release"
+            cpp: OFF
+            fortran: OFF
+            java: OFF
+            ts: ON
+            hl: OFF
+            parallel: OFF
+            toolchain: "config/toolchain/clang.cmake"
+            generator: "-G Ninja"
+          - name: "TS Debug GCC"
+            artifact: "LinuxTSDBG.tar.xz"
+            os: ubuntu-latest
+            build_type: "Debug"
+            cpp: OFF
+            fortran: OFF
+            java: OFF
+            ts: ON
+            hl: OFF
+            parallel: OFF
+            toolchain: "config/toolchain/GCC.cmake"
+            generator: "-G Ninja"
+          - name: "TS Autotools GCC"
+            artifact: "LinuxATS.tar.xz"
+            os: ubuntu-latest
+            build_type: "Release"
+            cpp: disable
+            fortran: disable
+            java: disable
+            ts: enable
+            hl: disable
+            parallel: disable
+            toolchain: ""
+            generator: "autogen"
+#          - name: "Ubuntu Parallel GCC"
+#            artifact: "LinuxPar.tar.xz"
+#            os: ubuntu-latest
+#            build_type: "Release"
+#            cpp: OFF
+#            fortran: OFF
+#            parallel: ON
+#            toolchain: "config/toolchain/GCC.cmake"
+#            generator: "-G Ninja"
+
+    name: ${{ matrix.name }}
+    # The type of runner that the job will run on
+    runs-on: ${{ matrix.os }}
+    if: "!contains(github.event.head_commit.message, 'skip-ci')"
+          
+    # Steps represent a sequence of tasks that will be executed as part of the job
+    steps:
+    - name: Install Dependencies (Linux)
+      run: sudo apt-get install ninja-build
+      if: matrix.os == 'ubuntu-latest'
+    - name: Install Autotools Dependencies (Linux)
+      run: sudo apt-get install automake autoconf libtool libtool-bin
+      if: matrix.generator == 'autogen'
+    - name: Install Dependencies (Windows)
+      run: choco install ninja
+      if: matrix.os == 'windows-latest'
+    - name: Install Dependencies (macOS)
+      run: brew install ninja
+      if: matrix.os == 'macos-latest'
+    - name: Set environment for MSVC (Windows)
+      if:  matrix.os == 'windows-latest'
+      run: |
+        # Set these env vars so cmake picks the correct compiler
+        echo "CXX=cl.exe" >> $GITHUB_ENV
+        echo "CC=cl.exe" >> $GITHUB_ENV
+    
+    # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
+    - name: Get Sources
+      uses: actions/checkout@v2
+
+    - name: Autotools Configure 
+      if: matrix.generator == 'autogen'
+      run: |
+        sh ./autogen.sh
+        mkdir "${{ runner.workspace }}/build"
+        cd "${{ runner.workspace }}/build"
+        $GITHUB_WORKSPACE/configure --enable-shared --${{ matrix.ts }}-threadsafe --${{ matrix.hl }}-hl --${{ matrix.parallel }}-parallel --${{ matrix.cpp }}-cxx --${{ matrix.fortran }}-fortran --${{ matrix.java }}-java
+      shell: bash
+
+    - name: Configure
+      if: matrix.generator != 'autogen'
+      run: |
+        mkdir "${{ runner.workspace }}/build"
+        cd "${{ runner.workspace }}/build"
+        cmake ${{ matrix.generator }} -DCMAKE_BUILD_TYPE=${{ matrix.build_type }} -DCMAKE_TOOLCHAIN_FILE=${{ matrix.toolchain }} -DBUILD_SHARED_LIBS=ON -DHDF5_ENABLE_ALL_WARNINGS=ON -DHDF5_ENABLE_THREADSAFE:BOOL=${{ matrix.ts }} -DHDF5_BUILD_HL_LIB:BOOL=${{ matrix.hl }} -DHDF5_ENABLE_PARALLEL:BOOL=${{ matrix.parallel }} -DHDF5_BUILD_CPP_LIB:BOOL=${{ matrix.cpp }} -DHDF5_BUILD_FORTRAN=${{ matrix.fortran }} -DHDF5_BUILD_JAVA=${{ matrix.java }} $GITHUB_WORKSPACE
+      shell: bash
+
+    - name: Autotools Build
+      if: matrix.generator == 'autogen'
+      run: make
+      working-directory: ${{ runner.workspace }}/build      
+
+    - name: Build
+      if: matrix.generator != 'autogen'
+      run: cmake --build . --config ${{ matrix.build_type }}
+      working-directory: ${{ runner.workspace }}/build      
+
+    - name: Autotools Test
+      if: matrix.generator == 'autogen'
+      run: make check
+      working-directory: ${{ runner.workspace }}/build
+
+    - name: Test
+      if: matrix.generator != 'autogen'
+      run: ctest --build . -C ${{ matrix.build_type }} -V
+      working-directory: ${{ runner.workspace }}/build

.h5chkright.ini

@@ -5,7 +5,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 

CMakeFilters.cmake

@@ -5,17 +5,21 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #
+option (USE_LIBAEC "Use AEC library as SZip Filter" OFF)
+option (USE_LIBAEC_STATIC "Use static AEC library " OFF)
 
 include (ExternalProject)
+include (FetchContent)
+
 #option (HDF5_ALLOW_EXTERNAL_SUPPORT "Allow External Library Building (NO GIT TGZ)" "NO")
 set (HDF5_ALLOW_EXTERNAL_SUPPORT "NO" CACHE STRING "Allow External Library Building (NO GIT TGZ)")
 set_property (CACHE HDF5_ALLOW_EXTERNAL_SUPPORT PROPERTY STRINGS NO GIT TGZ)
 if (HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "GIT" OR HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "TGZ")
-  option (ZLIB_USE_EXTERNAL "Use External Library Building for ZLIB" 1)
+  option (ZLIB_USE_EXTERNAL "Use External Library Building for HDF5_ZLIB" 1)
   option (SZIP_USE_EXTERNAL "Use External Library Building for SZIP" 1)
   if (HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "GIT")
     set (ZLIB_URL ${ZLIB_GIT_URL} CACHE STRING "Path to zlib git repository")
@@ -29,12 +33,19 @@ if (HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "GIT" OR HDF5_ALLOW_EXTERNAL_SUPPORT MAT
     set (ZLIB_URL ${TGZPATH}/${ZLIB_TGZ_NAME})
     if (NOT EXISTS "${ZLIB_URL}")
       set (HDF5_ENABLE_Z_LIB_SUPPORT OFF CACHE BOOL "" FORCE)
-      message (STATUS "Filter ZLIB file ${ZLIB_URL} not found")
+      if (CMAKE_VERSION VERSION_GREATER_EQUAL "3.15.0")
+        message (VERBOSE "Filter ZLIB file ${ZLIB_URL} not found")
+      endif ()
     endif ()
     set (SZIP_URL ${TGZPATH}/${SZIP_TGZ_NAME})
+    if (USE_LIBAEC)
+      set (SZIP_URL ${TGZPATH}/${SZAEC_TGZ_NAME})
+    endif ()
     if (NOT EXISTS "${SZIP_URL}")
       set (HDF5_ENABLE_SZIP_SUPPORT OFF CACHE BOOL "" FORCE)
-      message (STATUS "Filter SZIP file ${SZIP_URL} not found")
+      if (CMAKE_VERSION VERSION_GREATER_EQUAL "3.15.0")
+        message (VERBOSE "Filter SZIP file ${SZIP_URL} not found")
+      endif ()
     endif ()
   else ()
     set (ZLIB_USE_EXTERNAL 0)
@@ -54,7 +65,6 @@ if (HDF5_ENABLE_Z_LIB_SUPPORT)
         find_package (ZLIB) # Legacy find
         if (ZLIB_FOUND)
           set (LINK_COMP_LIBS ${LINK_COMP_LIBS} ${ZLIB_LIBRARIES})
-          set (LINK_COMP_SHARED_LIBS ${LINK_COMP_SHARED_LIBS} ${ZLIB_LIBRARIES})
         endif ()
       endif ()
     endif ()
@@ -71,7 +81,9 @@ if (HDF5_ENABLE_Z_LIB_SUPPORT)
         set (H5_HAVE_FILTER_DEFLATE 1)
         set (H5_HAVE_ZLIB_H 1)
         set (H5_HAVE_LIBZ 1)
-        message (STATUS "Filter ZLIB is built")
+        if (CMAKE_VERSION VERSION_GREATER_EQUAL "3.15.0")
+          message (VERBOSE "Filter HDF5_ZLIB is built")
+        endif ()
       else ()
         message (FATAL_ERROR " ZLib is Required for ZLib support in HDF5")
       endif ()
@@ -85,12 +97,11 @@ if (HDF5_ENABLE_Z_LIB_SUPPORT)
   if (H5_HAVE_FILTER_DEFLATE)
     set (EXTERNAL_FILTERS "${EXTERNAL_FILTERS} DEFLATE")
   endif ()
-  if (BUILD_SHARED_LIBS)
-    set (LINK_COMP_SHARED_LIBS ${LINK_COMP_SHARED_LIBS} ${ZLIB_SHARED_LIBRARY})
-  endif ()
   set (LINK_COMP_LIBS ${LINK_COMP_LIBS} ${ZLIB_STATIC_LIBRARY})
   INCLUDE_DIRECTORIES (${ZLIB_INCLUDE_DIRS})
-  message (STATUS "Filter ZLIB is ON")
+  if (CMAKE_VERSION VERSION_GREATER_EQUAL "3.15.0")
+    message (VERBOSE "Filter HDF5_ZLIB is ON")
+  endif ()
 endif ()
 
 #-----------------------------------------------------------------------------
@@ -100,12 +111,22 @@ option (HDF5_ENABLE_SZIP_SUPPORT "Use SZip Filter" OFF)
 if (HDF5_ENABLE_SZIP_SUPPORT)
   option (HDF5_ENABLE_SZIP_ENCODING "Use SZip Encoding" OFF)
   if (NOT SZIP_USE_EXTERNAL)
-    find_package (SZIP NAMES ${SZIP_PACKAGE_NAME}${HDF_PACKAGE_EXT} COMPONENTS static shared)
-    if (NOT SZIP_FOUND)
-      find_package (SZIP) # Legacy find
+    set(SZIP_FOUND FALSE)
+    if (USE_LIBAEC)
+      set(libaec_USE_STATIC_LIBS ${USE_LIBAEC_STATIC})
+      find_package (libaec 1.0.5 CONFIG)
       if (SZIP_FOUND)
         set (LINK_COMP_LIBS ${LINK_COMP_LIBS} ${SZIP_LIBRARIES})
-        set (LINK_COMP_SHARED_LIBS ${LINK_COMP_SHARED_LIBS} ${SZIP_LIBRARIES})
+      endif ()
+    endif ()
+
+    if (NOT SZIP_FOUND)
+      find_package (SZIP NAMES ${SZIP_PACKAGE_NAME}${HDF_PACKAGE_EXT} COMPONENTS static shared)
+      if (NOT SZIP_FOUND)
+        find_package (SZIP) # Legacy find
+        if (SZIP_FOUND)
+          set (LINK_COMP_LIBS ${LINK_COMP_LIBS} ${SZIP_LIBRARIES})
+        endif ()
       endif ()
     endif ()
   endif ()
@@ -121,17 +142,26 @@ if (HDF5_ENABLE_SZIP_SUPPORT)
       set (H5_HAVE_FILTER_SZIP 1)
       set (H5_HAVE_SZLIB_H 1)
       set (H5_HAVE_LIBSZ 1)
-      message (STATUS "Filter SZIP is built")
+      if (CMAKE_VERSION VERSION_GREATER_EQUAL "3.15.0")
+        message (VERBOSE "Filter SZIP is built")
+      endif ()
+      if (USE_LIBAEC)
+        if (CMAKE_VERSION VERSION_GREATER_EQUAL "3.15.0")
+          message (VERBOSE "... with library AEC")
+        endif ()
+        set (SZIP_PACKAGE_NAME ${LIBAEC_PACKAGE_NAME})
+      else ()
+        set (SZIP_PACKAGE_NAME ${SZIP_PACKAGE_NAME})
+      endif ()
     else ()
       message (FATAL_ERROR "SZIP is Required for SZIP support in HDF5")
     endif ()
   endif ()
-  if (BUILD_SHARED_LIBS)
-    set (LINK_COMP_SHARED_LIBS ${LINK_COMP_SHARED_LIBS} ${SZIP_SHARED_LIBRARY})
-  endif ()
   set (LINK_COMP_LIBS ${LINK_COMP_LIBS} ${SZIP_STATIC_LIBRARY})
   INCLUDE_DIRECTORIES (${SZIP_INCLUDE_DIRS})
-  message (STATUS "Filter SZIP is ON")
+  if (CMAKE_VERSION VERSION_GREATER_EQUAL "3.15.0")
+    message (VERBOSE "Filter SZIP is ON")
+  endif ()
   if (H5_HAVE_FILTER_SZIP)
     set (EXTERNAL_FILTERS "${EXTERNAL_FILTERS} DECODE")
   endif ()

CMakeInstallation.cmake

@@ -5,7 +5,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #
@@ -31,7 +31,7 @@ if (NOT HDF5_EXTERNALLY_CONFIGURED)
   if (HDF5_EXPORTED_TARGETS)
     install (
         EXPORT ${HDF5_EXPORTED_TARGETS}
-        DESTINATION ${HDF5_INSTALL_CMAKE_DIR}/hdf5
+        DESTINATION ${HDF5_INSTALL_CMAKE_DIR}
         FILE ${HDF5_PACKAGE}${HDF_PACKAGE_EXT}-targets.cmake
         NAMESPACE ${HDF_PACKAGE_NAMESPACE}
         COMPONENT configinstall
@@ -41,13 +41,11 @@ if (NOT HDF5_EXTERNALLY_CONFIGURED)
   #-----------------------------------------------------------------------------
   # Export all exported targets to the build tree for use by parent project
   #-----------------------------------------------------------------------------
-  if (NOT HDF5_EXTERNALLY_CONFIGURED)
-    export (
-        TARGETS ${HDF5_LIBRARIES_TO_EXPORT} ${HDF5_LIB_DEPENDENCIES} ${HDF5_UTILS_TO_EXPORT}
-        FILE ${HDF5_PACKAGE}${HDF_PACKAGE_EXT}-targets.cmake
-        NAMESPACE ${HDF_PACKAGE_NAMESPACE}
-    )
-  endif ()
+  export (
+      TARGETS ${HDF5_LIBRARIES_TO_EXPORT} ${HDF5_LIB_DEPENDENCIES} ${HDF5_UTILS_TO_EXPORT}
+      FILE ${HDF5_PACKAGE}${HDF_PACKAGE_EXT}-targets.cmake
+      NAMESPACE ${HDF_PACKAGE_NAMESPACE}
+  )
 endif ()
 
 #-----------------------------------------------------------------------------
@@ -55,7 +53,7 @@ endif ()
 #-----------------------------------------------------------------------------
 set (HDF5_INCLUDES_BUILD_TIME
     ${HDF5_SRC_DIR} ${HDF5_CPP_SRC_DIR} ${HDF5_HL_SRC_DIR}
-    ${HDF5_TOOLS_SRC_DIR} ${HDF5_BINARY_DIR}
+    ${HDF5_TOOLS_SRC_DIR} ${HDF5_SRC_BINARY_DIR}
 )
 
 #-----------------------------------------------------------------------------
@@ -74,7 +72,7 @@ set (CURRENT_BUILD_DIR "${CMAKE_CURRENT_BINARY_DIR}" )
 configure_package_config_file (
     ${HDF_RESOURCES_DIR}/hdf5-config.cmake.in
     "${HDF5_BINARY_DIR}/${HDF5_PACKAGE}${HDF_PACKAGE_EXT}-config.cmake"
-    INSTALL_DESTINATION "${HDF5_INSTALL_CMAKE_DIR}/hdf5"
+    INSTALL_DESTINATION "${HDF5_INSTALL_CMAKE_DIR}"
     PATH_VARS INCLUDE_INSTALL_DIR SHARE_INSTALL_DIR CURRENT_BUILD_DIR
     INSTALL_PREFIX "${CMAKE_CURRENT_BINARY_DIR}"
 )
@@ -88,14 +86,14 @@ set (CURRENT_BUILD_DIR "${CMAKE_INSTALL_PREFIX}" )
 configure_package_config_file (
     ${HDF_RESOURCES_DIR}/hdf5-config.cmake.in
     "${HDF5_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/${HDF5_PACKAGE}${HDF_PACKAGE_EXT}-config.cmake"
-    INSTALL_DESTINATION "${HDF5_INSTALL_CMAKE_DIR}/hdf5"
+    INSTALL_DESTINATION "${HDF5_INSTALL_CMAKE_DIR}"
     PATH_VARS INCLUDE_INSTALL_DIR SHARE_INSTALL_DIR CURRENT_BUILD_DIR
 )
 
 if (NOT HDF5_EXTERNALLY_CONFIGURED)
   install (
       FILES ${HDF5_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/${HDF5_PACKAGE}${HDF_PACKAGE_EXT}-config.cmake
-      DESTINATION ${HDF5_INSTALL_CMAKE_DIR}/hdf5
+      DESTINATION ${HDF5_INSTALL_CMAKE_DIR}
       COMPONENT configinstall
   )
 endif ()
@@ -104,19 +102,14 @@ endif ()
 # Configure the hdf5-config-version .cmake file for the install directory
 #-----------------------------------------------------------------------------
 if (NOT HDF5_EXTERNALLY_CONFIGURED)
-  # 3.11 or greater
-  #write_basic_package_version_file (
-  #  ${HDF5_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/${HDF5_PACKAGE}${HDF_PACKAGE_EXT}-config-version.cmake
-  #  VERSION ${HDF5_PACKAGE_VERSION}
-  #  COMPATIBILITY SameMinorVersion
-  #)
-  configure_file (
-      ${HDF_RESOURCES_DIR}/hdf5-config-version.cmake.in
-      ${HDF5_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/${HDF5_PACKAGE}${HDF_PACKAGE_EXT}-config-version.cmake @ONLY
+  write_basic_package_version_file (
+    "${HDF5_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/${HDF5_PACKAGE}${HDF_PACKAGE_EXT}-config-version.cmake"
+    VERSION ${HDF5_PACKAGE_VERSION}
+    COMPATIBILITY SameMinorVersion
   )
   install (
       FILES ${HDF5_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/${HDF5_PACKAGE}${HDF_PACKAGE_EXT}-config-version.cmake
-      DESTINATION ${HDF5_INSTALL_CMAKE_DIR}/hdf5
+      DESTINATION ${HDF5_INSTALL_CMAKE_DIR}
       COMPONENT configinstall
   )
 endif ()
@@ -131,10 +124,10 @@ else ()
 endif ()
 configure_file (
     ${HDF_RESOURCES_DIR}/libhdf5.settings.cmake.in
-    ${HDF5_BINARY_DIR}/libhdf5.settings ESCAPE_QUOTES @ONLY
+    ${HDF5_SRC_BINARY_DIR}/libhdf5.settings ESCAPE_QUOTES @ONLY
 )
 install (
-    FILES ${HDF5_BINARY_DIR}/libhdf5.settings
+    FILES ${HDF5_SRC_BINARY_DIR}/libhdf5.settings
     DESTINATION ${HDF5_INSTALL_LIB_DIR}
     COMPONENT libraries
 )
@@ -185,14 +178,14 @@ if (HDF5_PACK_EXAMPLES)
 endif ()
 
 #-----------------------------------------------------------------------------
-# Configure the README.txt file for the binary package
+# Configure the README.md file for the binary package
 #-----------------------------------------------------------------------------
 HDF_README_PROPERTIES(HDF5_BUILD_FORTRAN)
 
 #-----------------------------------------------------------------------------
 # Configure the COPYING.txt file for the windows binary package
 #-----------------------------------------------------------------------------
-if (WIN32 OR MINGW)
+if (WIN32)
   configure_file (${HDF5_SOURCE_DIR}/COPYING ${HDF5_BINARY_DIR}/COPYING.txt @ONLY)
 endif ()
 
@@ -201,18 +194,16 @@ endif ()
 #-----------------------------------------------------------------------------
 if (NOT HDF5_EXTERNALLY_CONFIGURED)
   install (
-      FILES
-          ${HDF5_SOURCE_DIR}/COPYING
+      FILES ${HDF5_SOURCE_DIR}/COPYING
       DESTINATION ${HDF5_INSTALL_DATA_DIR}
       COMPONENT hdfdocuments
   )
   if (EXISTS "${HDF5_SOURCE_DIR}/release_docs" AND IS_DIRECTORY "${HDF5_SOURCE_DIR}/release_docs")
     set (release_files
         ${HDF5_SOURCE_DIR}/release_docs/USING_HDF5_CMake.txt
-        ${HDF5_SOURCE_DIR}/release_docs/COPYING
         ${HDF5_SOURCE_DIR}/release_docs/RELEASE.txt
     )
-    if (WIN32 OR MINGW)
+    if (WIN32)
       set (release_files
           ${release_files}
           ${HDF5_SOURCE_DIR}/release_docs/USING_HDF5_VS.txt
@@ -226,7 +217,7 @@ if (NOT HDF5_EXTERNALLY_CONFIGURED)
           ${HDF5_SOURCE_DIR}/release_docs/HISTORY-1_8.txt
           ${HDF5_SOURCE_DIR}/release_docs/INSTALL
       )
-      if (WIN32 OR MINGW)
+      if (WIN32)
         set (release_files
             ${release_files}
             ${HDF5_SOURCE_DIR}/release_docs/INSTALL_Windows.txt
@@ -253,19 +244,6 @@ if (NOT HDF5_EXTERNALLY_CONFIGURED)
   endif ()
 endif ()
 
-if (CMAKE_INSTALL_PREFIX_INITIALIZED_TO_DEFAULT)
-  if (CMAKE_HOST_UNIX)
-    set (CMAKE_INSTALL_PREFIX "${CMAKE_INSTALL_PREFIX}/HDF_Group/${HDF5_PACKAGE_NAME}/${HDF5_PACKAGE_VERSION}"
-      CACHE PATH "Install path prefix, prepended onto install directories." FORCE)
-  else ()
-    GetDefaultWindowsPrefixBase(CMAKE_GENERIC_PROGRAM_FILES)
-    set (CMAKE_INSTALL_PREFIX
-      "${CMAKE_GENERIC_PROGRAM_FILES}/HDF_Group/${HDF5_PACKAGE_NAME}/${HDF5_PACKAGE_VERSION}"
-      CACHE PATH "Install path prefix, prepended onto install directories." FORCE)
-    set (CMAKE_GENERIC_PROGRAM_FILES)
-  endif ()
-endif ()
-
 #-----------------------------------------------------------------------------
 # Set the cpack variables
 #-----------------------------------------------------------------------------
@@ -280,9 +258,9 @@ if (NOT HDF5_EXTERNALLY_CONFIGURED AND NOT HDF5_NO_PACKAGES)
   set (CPACK_PACKAGE_VERSION_MAJOR "${HDF5_PACKAGE_VERSION_MAJOR}")
   set (CPACK_PACKAGE_VERSION_MINOR "${HDF5_PACKAGE_VERSION_MINOR}")
   set (CPACK_PACKAGE_VERSION_PATCH "")
+  set (CPACK_RESOURCE_FILE_LICENSE "${CMAKE_CURRENT_SOURCE_DIR}/COPYING")
   if (EXISTS "${HDF5_SOURCE_DIR}/release_docs")
     set (CPACK_PACKAGE_DESCRIPTION_FILE "${CMAKE_CURRENT_SOURCE_DIR}/release_docs/RELEASE.txt")
-    set (CPACK_RESOURCE_FILE_LICENSE "${CMAKE_CURRENT_SOURCE_DIR}/release_docs/COPYING")
     set (CPACK_RESOURCE_FILE_README "${CMAKE_CURRENT_SOURCE_DIR}/release_docs/RELEASE.txt")
   endif ()
   set (CPACK_PACKAGE_RELOCATABLE TRUE)
@@ -294,7 +272,7 @@ if (NOT HDF5_EXTERNALLY_CONFIGURED AND NOT HDF5_NO_PACKAGES)
   set (CPACK_PACKAGE_ICON "${HDF_RESOURCES_EXT_DIR}/hdf.bmp")
 
   set (CPACK_GENERATOR "TGZ")
-  if (WIN32 OR MINGW)
+  if (WIN32)
     set (CPACK_GENERATOR "ZIP")
 
     if (NSIS_EXECUTABLE)
@@ -413,13 +391,19 @@ if (NOT HDF5_EXTERNALLY_CONFIGURED AND NOT HDF5_NO_PACKAGES)
     set (CPACK_PACKAGING_INSTALL_PREFIX "/${CPACK_PACKAGE_INSTALL_DIRECTORY}")
     set (CPACK_COMPONENTS_ALL_IN_ONE_PACKAGE ON)
 
+    list (APPEND CPACK_GENERATOR "DEB")
     set (CPACK_DEBIAN_PACKAGE_SECTION "Libraries")
     set (CPACK_DEBIAN_PACKAGE_MAINTAINER "${HDF5_PACKAGE_BUGREPORT}")
 
-#    list (APPEND CPACK_GENERATOR "RPM")
+    list (APPEND CPACK_GENERATOR "RPM")
     set (CPACK_RPM_PACKAGE_RELEASE "1")
+    set (CPACK_RPM_PACKAGE_RELEASE_DIST ON)
     set (CPACK_RPM_COMPONENT_INSTALL ON)
     set (CPACK_RPM_PACKAGE_RELOCATABLE ON)
+    set (CPACK_RPM_FILE_NAME "RPM-DEFAULT")
+    set (CPACK_RPM_PACKAGE_NAME "${CPACK_PACKAGE_NAME}")
+    set (CPACK_RPM_PACKAGE_VERSION "${CPACK_PACKAGE_VERSION}")
+    set (CPACK_RPM_PACKAGE_VENDOR "${CPACK_PACKAGE_VENDOR}")
     set (CPACK_RPM_PACKAGE_LICENSE "BSD-style")
     set (CPACK_RPM_PACKAGE_GROUP "Development/Libraries")
     set (CPACK_RPM_PACKAGE_URL "${HDF5_PACKAGE_URL}")
@@ -459,7 +443,7 @@ The HDF5 data model, file format, API, library, and tools are open and distribut
   if (HDF5_PACKAGE_EXTLIBS)
     if (HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "GIT" OR HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "TGZ")
       if (ZLIB_FOUND AND ZLIB_USE_EXTERNAL)
-        if (WIN32 OR MINGW)
+        if (WIN32)
           set (CPACK_INSTALL_CMAKE_PROJECTS "${CPACK_INSTALL_CMAKE_PROJECTS};${ZLIB_INCLUDE_DIR_GEN};ZLIB;ALL;/")
         else ()
           set (CPACK_INSTALL_CMAKE_PROJECTS "${CPACK_INSTALL_CMAKE_PROJECTS};${ZLIB_INCLUDE_DIR_GEN};ZLIB;libraries;/")
@@ -468,7 +452,7 @@ The HDF5 data model, file format, API, library, and tools are open and distribut
         endif ()
       endif ()
       if (SZIP_FOUND AND SZIP_USE_EXTERNAL)
-        if (WIN32 OR MINGW)
+        if (WIN32)
           set (CPACK_INSTALL_CMAKE_PROJECTS "${CPACK_INSTALL_CMAKE_PROJECTS};${SZIP_INCLUDE_DIR_GEN};SZIP;ALL;/")
         else ()
           set (CPACK_INSTALL_CMAKE_PROJECTS "${CPACK_INSTALL_CMAKE_PROJECTS};${SZIP_INCLUDE_DIR_GEN};SZIP;libraries;/")
@@ -476,6 +460,13 @@ The HDF5 data model, file format, API, library, and tools are open and distribut
           set (CPACK_INSTALL_CMAKE_PROJECTS "${CPACK_INSTALL_CMAKE_PROJECTS};${SZIP_INCLUDE_DIR_GEN};SZIP;configinstall;/")
         endif ()
       endif ()
+      if (PLUGIN_FOUND AND PLUGIN_USE_EXTERNAL)
+        if (WIN32)
+          set (CPACK_INSTALL_CMAKE_PROJECTS "${CPACK_INSTALL_CMAKE_PROJECTS};${PLUGIN_BINARY_DIR};PLUGIN;ALL;/")
+        else ()
+          set (CPACK_INSTALL_CMAKE_PROJECTS "${CPACK_INSTALL_CMAKE_PROJECTS};${PLUGIN_BINARY_DIR};PLUGIN;libraries;/")
+        endif ()
+      endif ()
     endif ()
   endif ()
 
@@ -558,6 +549,13 @@ The HDF5 data model, file format, API, library, and tools are open and distribut
     )
   endif ()
 
+  cpack_add_component (utilsapplications
+      DISPLAY_NAME "HDF5 Utility Applications"
+      DEPENDS libraries
+      GROUP Applications
+      INSTALL_TYPES Full Developer User
+  )
+
   if (HDF5_BUILD_TOOLS)
     cpack_add_component (toolsapplications
         DISPLAY_NAME "HDF5 Tools Applications"

CMakeLists.txt

@@ -1,9 +1,13 @@
-cmake_minimum_required (VERSION 3.10)
+cmake_minimum_required (VERSION 3.12)
 project (HDF5 C)
 
-if(POLICY CMP0074)
-  cmake_policy(SET CMP0074 NEW)
-endif()
+if (POLICY CMP0074)
+  cmake_policy (SET CMP0074 NEW)
+endif ()
+
+if (POLICY CMP0083)
+  cmake_policy (SET CMP0083 NEW)
+endif ()
 
 #-----------------------------------------------------------------------------
 # Instructions for use : Normal Build
@@ -15,7 +19,7 @@ endif()
 # Make install can be used to install all components for system-wide use.
 #
 if (CMAKE_CURRENT_SOURCE_DIR STREQUAL CMAKE_CURRENT_BINARY_DIR)
-    MESSAGE(FATAL_ERROR "\nERROR! ${PROJECT_NAME} DOES NOT SUPPORT IN SOURCE BUILDS!\n"
+    message (FATAL_ERROR "\nERROR! ${PROJECT_NAME} DOES NOT SUPPORT IN SOURCE BUILDS!\n"
       "CMAKE_CURRENT_SOURCE_DIR=${CMAKE_CURRENT_SOURCE_DIR}"
       " == CMAKE_CURRENT_BINARY_DIR=${CMAKE_CURRENT_BINARY_DIR}\n"
       "NEXT STEPS:\n"
@@ -34,9 +38,13 @@ endif ()
 
 # CMake version 3.14 added option --ignore-eol to compare files
 #     cmake -E compare_files --ignore-eol file1 file2
-#if(CMAKE_VERSION VERSION_LESS "3.14.0" AND WIN32)
-#    MESSAGE(FATAL_ERROR "Windows builds requires a minimum of CMake 3.14")
-#endif()
+set (CMAKE_IGNORE_EOL "--ignore-eol")
+if (CMAKE_VERSION VERSION_LESS "3.14.0")
+  set (CMAKE_IGNORE_EOL "")
+  if (WIN32)
+    message (FATAL_ERROR "Windows builds require a minimum of CMake 3.14")
+  endif()
+endif ()
 
 #-----------------------------------------------------------------------------
 # Instructions for use : Sub-Project Build
@@ -63,6 +71,13 @@ mark_as_advanced (HDF5_EXTERNAL_LIB_PREFIX)
 #   If the parent project needs to install hdf libraries, but avoid
 #   name conflicts with system versions, then a prefix may be added
 #   to ensure that the correct versions configured are used.
+set (HDF5_LIB_INFIX "" CACHE STRING "Use infix for custom library naming.")
+mark_as_advanced (HDF5_LIB_INFIX)
+# HDF5_LIB_INFIX :
+#   This infix is added to all library names after 'hdf5'.
+#   e.g. the infix '_openmpi' results in the library name 'libhdf5_openmpi.so'
+#   This name is used in packages on debian based systems.
+#   (see https://packages.debian.org/jessie/amd64/libhdf5-openmpi-8/filelist)
 #
 # HDF5_INSTALL_BIN_DIR, HDF5_INSTALL_LIB_DIR, HDF5_INSTALL_INCLUDE_DIR, HDF5_INSTALL_DATA_DIR :
 #   Customize the 'bin', 'lib', 'include', and 'share' installation directories.
@@ -100,7 +115,7 @@ mark_as_advanced (HDF5_EXTERNAL_LIB_PREFIX)
 #   # Add the sub project
 #   add_subdirectory (Utilities/hdf5-1.8)
 #-----------------------------------------------------------------------------
-string(TIMESTAMP CONFIG_DATE "%Y-%m-%d")
+string (TIMESTAMP CONFIG_DATE "%Y-%m-%d")
 
 #-----------------------------------------------------------------------------
 # Allow Visual Studio solution directories
@@ -122,19 +137,20 @@ mark_as_advanced (ALLOW_UNSUPPORTED)
 #-----------------------------------------------------------------------------
 # Set the core names of all the libraries
 #-----------------------------------------------------------------------------
-set (HDF5_LIB_CORENAME              "hdf5")
-set (HDF5_TEST_LIB_CORENAME         "hdf5_test")
-set (HDF5_CPP_LIB_CORENAME          "hdf5_cpp")
-set (HDF5_HL_LIB_CORENAME           "hdf5_hl")
-set (HDF5_HL_CPP_LIB_CORENAME       "hdf5_hl_cpp")
-set (HDF5_TOOLS_LIB_CORENAME        "hdf5_tools")
-set (HDF5_F90_LIB_CORENAME          "hdf5_fortran")
-set (HDF5_F90_C_LIB_CORENAME        "hdf5_f90cstub")
-set (HDF5_F90_TEST_LIB_CORENAME     "hdf5_test_fortran")
-set (HDF5_F90_C_TEST_LIB_CORENAME   "hdf5_test_f90cstub")
-set (HDF5_HL_F90_LIB_CORENAME       "hdf5_hl_fortran")
-set (HDF5_HL_F90_C_LIB_CORENAME     "hdf5_hl_f90cstub")
-set (HDF5_JAVA_JNI_LIB_CORENAME     "hdf5_java")
+set (HDF5_LIB_CORENAME              "hdf5${HDF5_LIB_INFIX}")
+set (HDF5_TEST_LIB_CORENAME         "hdf5${HDF5_LIB_INFIX}_test")
+set (HDF5_CPP_LIB_CORENAME          "hdf5${HDF5_LIB_INFIX}_cpp")
+set (HDF5_HL_LIB_CORENAME           "hdf5${HDF5_LIB_INFIX}_hl")
+set (HDF5_HL_CPP_LIB_CORENAME       "hdf5${HDF5_LIB_INFIX}_hl_cpp")
+set (HDF5_TOOLS_LIB_CORENAME        "hdf5${HDF5_LIB_INFIX}_tools")
+set (HDF5_UTILS_LIB_CORENAME        "hdf5${HDF5_LIB_INFIX}_utils")
+set (HDF5_F90_LIB_CORENAME          "hdf5${HDF5_LIB_INFIX}_fortran")
+set (HDF5_F90_C_LIB_CORENAME        "hdf5${HDF5_LIB_INFIX}_f90cstub")
+set (HDF5_F90_TEST_LIB_CORENAME     "hdf5${HDF5_LIB_INFIX}_test_fortran")
+set (HDF5_F90_C_TEST_LIB_CORENAME   "hdf5${HDF5_LIB_INFIX}_test_f90cstub")
+set (HDF5_HL_F90_LIB_CORENAME       "hdf5${HDF5_LIB_INFIX}_hl_fortran")
+set (HDF5_HL_F90_C_LIB_CORENAME     "hdf5${HDF5_LIB_INFIX}_hl_f90cstub")
+set (HDF5_JAVA_JNI_LIB_CORENAME     "hdf5${HDF5_LIB_INFIX}_java")
 set (HDF5_JAVA_HDF5_LIB_CORENAME    "jarhdf5")
 set (HDF5_JAVA_TEST_LIB_CORENAME    "jartest5")
 
@@ -147,6 +163,7 @@ set (HDF5_CPP_LIB_NAME          "${HDF5_EXTERNAL_LIB_PREFIX}${HDF5_CPP_LIB_COREN
 set (HDF5_HL_LIB_NAME           "${HDF5_EXTERNAL_LIB_PREFIX}${HDF5_HL_LIB_CORENAME}")
 set (HDF5_HL_CPP_LIB_NAME       "${HDF5_EXTERNAL_LIB_PREFIX}${HDF5_HL_CPP_LIB_CORENAME}")
 set (HDF5_TOOLS_LIB_NAME        "${HDF5_EXTERNAL_LIB_PREFIX}${HDF5_TOOLS_LIB_CORENAME}")
+set (HDF5_UTILS_LIB_NAME        "${HDF5_EXTERNAL_LIB_PREFIX}${HDF5_UTILS_LIB_CORENAME}")
 set (HDF5_F90_LIB_NAME          "${HDF5_EXTERNAL_LIB_PREFIX}${HDF5_F90_LIB_CORENAME}")
 set (HDF5_F90_C_LIB_NAME        "${HDF5_EXTERNAL_LIB_PREFIX}${HDF5_F90_C_LIB_CORENAME}")
 set (HDF5_F90_TEST_LIB_NAME     "${HDF5_EXTERNAL_LIB_PREFIX}${HDF5_F90_TEST_LIB_CORENAME}")
@@ -166,6 +183,7 @@ set (HDF5_CPP_LIB_TARGET          "${HDF5_CPP_LIB_CORENAME}-static")
 set (HDF5_HL_LIB_TARGET           "${HDF5_HL_LIB_CORENAME}-static")
 set (HDF5_HL_CPP_LIB_TARGET       "${HDF5_HL_CPP_LIB_CORENAME}-static")
 set (HDF5_TOOLS_LIB_TARGET        "${HDF5_TOOLS_LIB_CORENAME}-static")
+set (HDF5_UTILS_LIB_TARGET        "${HDF5_UTILS_LIB_CORENAME}-static")
 set (HDF5_F90_LIB_TARGET          "${HDF5_F90_LIB_CORENAME}-static")
 set (HDF5_F90_C_LIB_TARGET        "${HDF5_F90_C_LIB_CORENAME}-static")
 set (HDF5_F90_TEST_LIB_TARGET     "${HDF5_F90_TEST_LIB_CORENAME}-static")
@@ -181,6 +199,7 @@ set (HDF5_CPP_LIBSH_TARGET        "${HDF5_CPP_LIB_CORENAME}-shared")
 set (HDF5_HL_LIBSH_TARGET         "${HDF5_HL_LIB_CORENAME}-shared")
 set (HDF5_HL_CPP_LIBSH_TARGET     "${HDF5_HL_CPP_LIB_CORENAME}-shared")
 set (HDF5_TOOLS_LIBSH_TARGET      "${HDF5_TOOLS_LIB_CORENAME}-shared")
+set (HDF5_UTILS_LIBSH_TARGET      "${HDF5_UTILS_LIB_CORENAME}-shared")
 set (HDF5_F90_LIBSH_TARGET        "${HDF5_F90_LIB_CORENAME}-shared")
 set (HDF5_F90_C_LIBSH_TARGET      "${HDF5_F90_C_LIB_CORENAME}-shared")
 set (HDF5_F90_TEST_LIBSH_TARGET   "${HDF5_F90_TEST_LIB_CORENAME}-shared")
@@ -191,6 +210,7 @@ set (HDF5_HL_F90_C_LIBSH_TARGET   "${HDF5_HL_F90_C_LIB_CORENAME}-shared")
 #-----------------------------------------------------------------------------
 # Define some CMake variables for use later in the project
 #-----------------------------------------------------------------------------
+set (HDF_CONFIG_DIR          ${HDF5_SOURCE_DIR}/config)
 set (HDF_RESOURCES_DIR       ${HDF5_SOURCE_DIR}/config/cmake)
 set (HDF_RESOURCES_EXT_DIR   ${HDF5_SOURCE_DIR}/config/cmake_ext_mod)
 set (HDF5_SRC_DIR            ${HDF5_SOURCE_DIR}/src)
@@ -203,14 +223,16 @@ set (HDF5_HL_TOOLS_DIR       ${HDF5_SOURCE_DIR}/hl/tools)
 set (HDF5_TOOLS_DIR          ${HDF5_SOURCE_DIR}/tools)
 set (HDF5_TOOLS_SRC_DIR      ${HDF5_SOURCE_DIR}/tools/src)
 set (HDF5_PERFORM_SRC_DIR    ${HDF5_SOURCE_DIR}/tools/src/perform)
+set (HDF5_UTILS_DIR          ${HDF5_SOURCE_DIR}/utils)
 set (HDF5_F90_SRC_DIR        ${HDF5_SOURCE_DIR}/fortran)
 set (HDF5_JAVA_JNI_SRC_DIR         ${HDF5_SOURCE_DIR}/java/src/jni)
 set (HDF5_JAVA_HDF5_SRC_DIR        ${HDF5_SOURCE_DIR}/java/src/hdf)
 set (HDF5_JAVA_TEST_SRC_DIR        ${HDF5_SOURCE_DIR}/java/test)
 set (HDF5_JAVA_LIB_DIR             ${HDF5_SOURCE_DIR}/java/lib)
-set (HDF5_JAVA_LOGGING_JAR         ${HDF5_SOURCE_DIR}/java/lib/slf4j-api-1.7.25.jar)
-set (HDF5_JAVA_LOGGING_NOP_JAR     ${HDF5_SOURCE_DIR}/java/lib/ext/slf4j-nop-1.7.25.jar)
-set (HDF5_JAVA_LOGGING_SIMPLE_JAR  ${HDF5_SOURCE_DIR}/java/lib/ext/slf4j-simple-1.7.25.jar)
+set (HDF5_JAVA_LOGGING_JAR         ${HDF5_SOURCE_DIR}/java/lib/slf4j-api-1.7.33.jar)
+set (HDF5_JAVA_LOGGING_NOP_JAR     ${HDF5_SOURCE_DIR}/java/lib/ext/slf4j-nop-1.7.33.jar)
+set (HDF5_JAVA_LOGGING_SIMPLE_JAR  ${HDF5_SOURCE_DIR}/java/lib/ext/slf4j-simple-1.7.33.jar)
+set (HDF5_DOXYGEN_DIR              ${HDF5_SOURCE_DIR}/doxygen)
 
 #-----------------------------------------------------------------------------
 # parse the full version number from H5public.h and include in H5_VERS_INFO
@@ -222,9 +244,11 @@ string (REGEX REPLACE ".*#define[ \t]+H5_VERS_MINOR[ \t]+([0-9]*).*$"
     "\\1" H5_VERS_MINOR ${_h5public_h_contents})
 string (REGEX REPLACE ".*#define[ \t]+H5_VERS_RELEASE[ \t]+([0-9]*).*$"
     "\\1" H5_VERS_RELEASE ${_h5public_h_contents})
-string (REGEX REPLACE ".*#define[ \t]+H5_VERS_SUBRELEASE[ \t]+\"([0-9A-Za-z._]*)\".*$"
+string (REGEX REPLACE ".*#define[ \t]+H5_VERS_SUBRELEASE[ \t]+\"([0-9A-Za-z._-]*)\".*$"
     "\\1" H5_VERS_SUBRELEASE ${_h5public_h_contents})
-#message (STATUS "VERSION: ${H5_VERS_MAJOR}.${H5_VERS_MINOR}.${H5_VERS_RELEASE}-${H5_VERS_SUBRELEASE}")
+if (CMAKE_VERSION VERSION_GREATER_EQUAL "3.15.0")
+  message (TRACE "VERSION: ${H5_VERS_MAJOR}.${H5_VERS_MINOR}.${H5_VERS_RELEASE}-${H5_VERS_SUBRELEASE}")
+endif ()
 
 #-----------------------------------------------------------------------------
 # parse the full soversion number from config/lt_vers.am and include in H5_SOVERS_INFO
@@ -237,7 +261,9 @@ string (REGEX REPLACE ".*LT_VERS_REVISION[ \t]+=[ \t]+([0-9]*).*$"
 string (REGEX REPLACE ".*LT_VERS_AGE[ \t]+=[ \t]+([0-9]*).*$"
     "\\1" H5_LIB_SOVERS_RELEASE ${_lt_vers_am_contents})
 math (EXPR H5_LIB_SOVERS_MAJOR ${H5_LIB_SOVERS_INTERFACE}-${H5_LIB_SOVERS_RELEASE})
-message (STATUS "SOVERSION: ${H5_LIB_SOVERS_MAJOR}.${H5_LIB_SOVERS_RELEASE}.${H5_LIB_SOVERS_MINOR}")
+if (CMAKE_VERSION VERSION_GREATER_EQUAL "3.15.0")
+  message (VERBOSE "SOVERSION: ${H5_LIB_SOVERS_MAJOR}.${H5_LIB_SOVERS_RELEASE}.${H5_LIB_SOVERS_MINOR}")
+endif ()
 string (REGEX MATCH ".*LT_TOOLS_VERS_INTERFACE[ \t]+=[ \t]+([0-9]*).*$" H5_TOOLS_SOVERS_EXISTS ${_lt_vers_am_contents})
 if (H5_TOOLS_SOVERS_EXISTS)
   string (REGEX REPLACE ".*LT_TOOLS_VERS_INTERFACE[ \t]+=[ \t]+([0-9]*).*$"
@@ -247,7 +273,9 @@ if (H5_TOOLS_SOVERS_EXISTS)
   string (REGEX REPLACE ".*LT_TOOLS_VERS_AGE[ \t]+=[ \t]+([0-9]*).*$"
       "\\1" H5_TOOLS_SOVERS_RELEASE ${_lt_vers_am_contents})
   math (EXPR H5_TOOLS_SOVERS_MAJOR ${H5_TOOLS_SOVERS_INTERFACE}-${H5_TOOLS_SOVERS_RELEASE})
-  message (STATUS "SOVERSION_TOOLS: ${H5_TOOLS_SOVERS_MAJOR}.${H5_TOOLS_SOVERS_RELEASE}.${H5_TOOLS_SOVERS_MINOR}")
+  if (CMAKE_VERSION VERSION_GREATER_EQUAL "3.15.0")
+    message (VERBOSE "SOVERSION_TOOLS: ${H5_TOOLS_SOVERS_MAJOR}.${H5_TOOLS_SOVERS_RELEASE}.${H5_TOOLS_SOVERS_MINOR}")
+  endif ()
 endif ()
 string (REGEX MATCH ".*LT_CXX_VERS_INTERFACE[ \t]+=[ \t]+([0-9]*).*$" H5_CXX_SOVERS_EXISTS ${_lt_vers_am_contents})
 if (H5_CXX_SOVERS_EXISTS)
@@ -258,7 +286,9 @@ if (H5_CXX_SOVERS_EXISTS)
   string (REGEX REPLACE ".*LT_CXX_VERS_AGE[ \t]+=[ \t]+([0-9]*).*$"
       "\\1" H5_CXX_SOVERS_RELEASE ${_lt_vers_am_contents})
   math (EXPR H5_CXX_SOVERS_MAJOR ${H5_CXX_SOVERS_INTERFACE}-${H5_CXX_SOVERS_RELEASE})
-  message (STATUS "SOVERSION_CXX: ${H5_CXX_SOVERS_MAJOR}.${H5_CXX_SOVERS_RELEASE}.${H5_CXX_SOVERS_MINOR}")
+  if (CMAKE_VERSION VERSION_GREATER_EQUAL "3.15.0")
+    message (VERBOSE "SOVERSION_CXX: ${H5_CXX_SOVERS_MAJOR}.${H5_CXX_SOVERS_RELEASE}.${H5_CXX_SOVERS_MINOR}")
+  endif ()
 endif ()
 string (REGEX MATCH ".*LT_F_VERS_INTERFACE[ \t]+=[ \t]+([0-9]*).*$" H5_F_SOVERS_EXISTS ${_lt_vers_am_contents})
 if (H5_F_SOVERS_EXISTS)
@@ -269,7 +299,9 @@ if (H5_F_SOVERS_EXISTS)
   string (REGEX REPLACE ".*LT_F_VERS_AGE[ \t]+=[ \t]+([0-9]*).*$"
       "\\1" H5_F_SOVERS_RELEASE ${_lt_vers_am_contents})
   math (EXPR H5_F_SOVERS_MAJOR ${H5_F_SOVERS_INTERFACE}-${H5_F_SOVERS_RELEASE})
-  message (STATUS "SOVERSION_F: ${H5_F_SOVERS_MAJOR}.${H5_F_SOVERS_RELEASE}.${H5_F_SOVERS_MINOR}")
+  if (CMAKE_VERSION VERSION_GREATER_EQUAL "3.15.0")
+    message (VERBOSE "SOVERSION_F: ${H5_F_SOVERS_MAJOR}.${H5_F_SOVERS_RELEASE}.${H5_F_SOVERS_MINOR}")
+  endif ()
 endif ()
 string (REGEX MATCH ".*LT_HL_VERS_INTERFACE[ \t]+=[ \t]+([0-9]*).*$" H5_HL_SOVERS_EXISTS ${_lt_vers_am_contents})
 if (H5_HL_SOVERS_EXISTS)
@@ -280,7 +312,9 @@ if (H5_HL_SOVERS_EXISTS)
   string (REGEX REPLACE ".*LT_HL_VERS_AGE[ \t]+=[ \t]+([0-9]*).*$"
       "\\1" H5_HL_SOVERS_RELEASE ${_lt_vers_am_contents})
   math (EXPR H5_HL_SOVERS_MAJOR ${H5_HL_SOVERS_INTERFACE}-${H5_HL_SOVERS_RELEASE})
-  message (STATUS "SOVERSION_HL: ${H5_HL_SOVERS_MAJOR}.${H5_HL_SOVERS_RELEASE}.${H5_HL_SOVERS_MINOR}")
+  if (CMAKE_VERSION VERSION_GREATER_EQUAL "3.15.0")
+    message (VERBOSE "SOVERSION_HL: ${H5_HL_SOVERS_MAJOR}.${H5_HL_SOVERS_RELEASE}.${H5_HL_SOVERS_MINOR}")
+  endif ()
 endif ()
 string (REGEX MATCH ".*LT_HL_CXX_VERS_INTERFACE[ \t]+=[ \t]+([0-9]*).*$" H5_HL_CXX_SOVERS_EXISTS ${_lt_vers_am_contents})
 if (H5_HL_CXX_SOVERS_EXISTS)
@@ -291,7 +325,9 @@ if (H5_HL_CXX_SOVERS_EXISTS)
   string (REGEX REPLACE ".*LT_HL_CXX_VERS_AGE[ \t]+=[ \t]+([0-9]*).*$"
       "\\1" H5_HL_CXX_SOVERS_RELEASE ${_lt_vers_am_contents})
   math (EXPR H5_HL_CXX_SOVERS_MAJOR ${H5_HL_CXX_SOVERS_INTERFACE}-${H5_HL_CXX_SOVERS_RELEASE})
-  message (STATUS "SOVERSION_HL_CXX: ${H5_HL_CXX_SOVERS_MAJOR}.${H5_HL_CXX_SOVERS_RELEASE}.${H5_HL_CXX_SOVERS_MINOR}")
+  if (CMAKE_VERSION VERSION_GREATER_EQUAL "3.15.0")
+    message (VERBOSE "SOVERSION_HL_CXX: ${H5_HL_CXX_SOVERS_MAJOR}.${H5_HL_CXX_SOVERS_RELEASE}.${H5_HL_CXX_SOVERS_MINOR}")
+  endif ()
 endif ()
 string (REGEX MATCH ".*LT_HL_F_VERS_INTERFACE[ \t]+=[ \t]+([0-9]*).*$" H5_HL_F_SOVERS_EXISTS ${_lt_vers_am_contents})
 if (H5_HL_F_SOVERS_EXISTS)
@@ -302,7 +338,9 @@ if (H5_HL_F_SOVERS_EXISTS)
   string (REGEX REPLACE ".*LT_HL_F_VERS_AGE[ \t]+=[ \t]+([0-9]*).*$"
       "\\1" H5_HL_F_SOVERS_RELEASE ${_lt_vers_am_contents})
   math (EXPR H5_HL_F_SOVERS_MAJOR ${H5_HL_F_SOVERS_INTERFACE}-${H5_HL_F_SOVERS_RELEASE})
-  message (STATUS "SOVERSION_HL_F: ${H5_HL_F_SOVERS_MAJOR}.${H5_HL_F_SOVERS_RELEASE}.${H5_HL_F_SOVERS_MINOR}")
+  if (CMAKE_VERSION VERSION_GREATER_EQUAL "3.15.0")
+    message (VERBOSE "SOVERSION_HL_F: ${H5_HL_F_SOVERS_MAJOR}.${H5_HL_F_SOVERS_RELEASE}.${H5_HL_F_SOVERS_MINOR}")
+  endif ()
 endif ()
 string (REGEX MATCH ".*LT_JAVA_VERS_INTERFACE[ \t]+=[ \t]+([0-9]*).*$" H5_JAVA_SOVERS_EXISTS ${_lt_vers_am_contents})
 if(H5_JAVA_SOVERS_EXISTS)
@@ -313,7 +351,9 @@ if(H5_JAVA_SOVERS_EXISTS)
   string (REGEX REPLACE ".*LT_JAVA_VERS_AGE[ \t]+=[ \t]+([0-9]*).*$"
       "\\1" H5_JAVA_SOVERS_RELEASE ${_lt_vers_am_contents})
   math (EXPR H5_JAVA_SOVERS_MAJOR ${H5_JAVA_SOVERS_INTERFACE}-${H5_JAVA_SOVERS_RELEASE})
-  message (STATUS "SOVERSION_JAVA: ${H5_JAVA_SOVERS_MAJOR}.${H5_JAVA_SOVERS_RELEASE}.${H5_JAVA_SOVERS_MINOR}")
+  if (CMAKE_VERSION VERSION_GREATER_EQUAL "3.15.0")
+    message (VERBOSE "SOVERSION_JAVA: ${H5_JAVA_SOVERS_MAJOR}.${H5_JAVA_SOVERS_RELEASE}.${H5_JAVA_SOVERS_MINOR}")
+  endif ()
 endif ()
 
 #-----------------------------------------------------------------------------
@@ -325,9 +365,11 @@ set (HDF5_PACKAGE_VERSION "${H5_VERS_MAJOR}.${H5_VERS_MINOR}.${H5_VERS_RELEASE}"
 set (HDF5_PACKAGE_VERSION_MAJOR "${H5_VERS_MAJOR}.${H5_VERS_MINOR}")
 set (HDF5_PACKAGE_VERSION_MINOR "${H5_VERS_RELEASE}")
 if (H5_VERS_SUBRELEASE)
-  set (HDF5_PACKAGE_VERSION_STRING "${HDF5_PACKAGE_VERSION}-${H5_VERS_SUBRELEASE}")
+  set (HDF5_PACKAGE_VERSION_STRING "${HDF5_PACKAGE_VERSION}.${H5_VERS_SUBRELEASE}")
+  set (HDF5_RELEASE_VERSION_STRING "${HDF5_PACKAGE_VERSION}-${H5_VERS_SUBRELEASE}")
 else ()
   set (HDF5_PACKAGE_VERSION_STRING "${HDF5_PACKAGE_VERSION}")
+  set (HDF5_RELEASE_VERSION_STRING "${HDF5_PACKAGE_VERSION}")
 endif ()
 set (HDF5_LIB_PACKAGE_SOVERSION "${H5_LIB_SOVERS_MAJOR}.${H5_LIB_SOVERS_RELEASE}.${H5_LIB_SOVERS_MINOR}")
 set (HDF5_LIB_PACKAGE_SOVERSION_MAJOR "${H5_LIB_SOVERS_MAJOR}")
@@ -393,6 +435,7 @@ include (${HDF_RESOURCES_EXT_DIR}/HDFMacros.cmake)
 HDF_DIR_PATHS(${HDF5_PACKAGE_NAME})
 
 include (${HDF_RESOURCES_EXT_DIR}/HDFLibMacros.cmake)
+include (${HDF_RESOURCES_DIR}/HDF5PluginMacros.cmake)
 include (${HDF_RESOURCES_DIR}/HDF5Macros.cmake)
 
 #-----------------------------------------------------------------------------
@@ -432,19 +475,46 @@ endif ()
 #-----------------------------------------------------------------------------
 # Option to Build Shared and Static libs, default is both
 #-----------------------------------------------------------------------------
+option (BUILD_STATIC_LIBS "Build Static Libraries" ON)
+set (H5_ENABLE_STATIC_LIB NO)
+option (BUILD_SHARED_LIBS "Build Shared Libraries" ON)
+set (H5_ENABLE_SHARED_LIB NO)
 option (ONLY_SHARED_LIBS "Only Build Shared Libraries" OFF)
-set (H5_ENABLE_STATIC_LIB YES)
+mark_as_advanced (ONLY_SHARED_LIBS)
+
+if (BUILD_STATIC_LIBS)
+  set (H5_ENABLE_STATIC_LIB YES)
+endif ()
+if (BUILD_SHARED_LIBS)
+  set (H5_ENABLE_SHARED_LIB YES)
+endif ()
+
+# Force only shared libraries if all OFF
+if (NOT BUILD_STATIC_LIBS AND NOT BUILD_SHARED_LIBS)
+  set (ONLY_SHARED_LIBS ON CACHE BOOL "Only Build Shared Libraries" FORCE)
+endif ()
+
 if (ONLY_SHARED_LIBS)
   set (H5_ENABLE_STATIC_LIB NO)
   set (BUILD_SHARED_LIBS ON CACHE BOOL "Build Shared Libraries")
 endif ()
-option (BUILD_SHARED_LIBS "Build Shared Libraries" ON)
-set (H5_ENABLE_SHARED_LIB NO)
-if (BUILD_SHARED_LIBS)
-  set (H5_ENABLE_SHARED_LIB YES)
-endif ()
+
 set (CMAKE_POSITION_INDEPENDENT_CODE ON)
 
+if (NOT BUILD_SHARED_LIBS)
+  set (tgt_file_ext "")
+else ()
+  set (tgt_file_ext "-shared")
+endif ()
+
+#-----------------------------------------------------------------------------
+# perl is used in some optional src and tests, check availability
+find_package (Perl)
+if (PERL_FOUND)
+  set (H5_PERL_FOUND YES)
+endif ()
+#-----------------------------------------------------------------------------
+
 #-----------------------------------------------------------------------------
 # Option to Build Static executables
 #-----------------------------------------------------------------------------
@@ -456,18 +526,39 @@ if (BUILD_STATIC_EXECS)
   endif ()
 endif ()
 
+option (HDF5_ENABLE_ANALYZER_TOOLS "enable the use of Clang tools" OFF)
+mark_as_advanced (HDF5_ENABLE_ANALYZER_TOOLS)
+if (HDF5_ENABLE_ANALYZER_TOOLS)
+  include (${HDF5_SOURCE_DIR}/config/sanitizer/tools.cmake)
+endif ()
+option (HDF5_ENABLE_SANITIZERS "execute the Clang sanitizer" OFF)
+mark_as_advanced (HDF5_ENABLE_SANITIZERS)
+if (HDF5_ENABLE_SANITIZERS)
+  include (${HDF5_SOURCE_DIR}/config/sanitizer/sanitizers.cmake)
+endif ()
+option (HDF5_ENABLE_FORMATTERS "format source files" OFF)
+mark_as_advanced (HDF5_ENABLE_FORMATTERS)
+if (HDF5_ENABLE_FORMATTERS)
+  include (${HDF5_SOURCE_DIR}/config/sanitizer/formatting.cmake)
+endif ()
+
 #-----------------------------------------------------------------------------
 # Option to use code coverage
 #-----------------------------------------------------------------------------
 option (HDF5_ENABLE_COVERAGE "Enable code coverage for Libraries and Programs" OFF)
 if (HDF5_ENABLE_COVERAGE)
-  set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -g -O0 --coverage -fprofile-arcs -ftest-coverage")
-  set (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -g --coverage -O0 -fprofile-arcs -ftest-coverage")
-  if (CMAKE_C_COMPILER_ID STREQUAL "GNU")
-    set (LDFLAGS "${LDFLAGS} -fprofile-arcs -ftest-coverage")
-    link_libraries (gcov)
+  include (${HDF5_SOURCE_DIR}/config/sanitizer/code-coverage.cmake)
+  if(CODE_COVERAGE AND CODE_COVERAGE_ADDED)
+    add_code_coverage () # Adds instrumentation to all targets
   else ()
-    set (CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} --coverage")
+    set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -g -O0 --coverage -fprofile-arcs -ftest-coverage")
+    set (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -g --coverage -O0 -fprofile-arcs -ftest-coverage")
+    if (CMAKE_C_COMPILER_ID STREQUAL "GNU")
+      set (LDFLAGS "${LDFLAGS} -fprofile-arcs -ftest-coverage")
+      link_libraries (gcov)
+    else ()
+      set (CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} --coverage")
+    endif ()
   endif ()
 endif ()
 
@@ -521,14 +612,15 @@ endif ()
 # Certain systems may add /Debug or /Release to output paths
 # and we need to call the executable from inside the CMake configuration
 #-----------------------------------------------------------------------------
-set (EXE_EXT "")
-if (WIN32 OR MINGW)
-  set (EXE_EXT ".exe")
-  add_definitions (-D_BIND_TO_CURRENT_VCLIBS_VERSION=1)
-  add_definitions (-D_CRT_SECURE_NO_WARNINGS)
-  add_definitions (-D_CONSOLE)
+if (WIN32)
+  add_compile_definitions (_CRT_SECURE_NO_WARNINGS)
+  if (MSVC)
+    add_compile_definitions (_BIND_TO_CURRENT_VCLIBS_VERSION=1 _CONSOLE)
+  endif ()
 endif ()
 
+option (HDF5_MINGW_STATIC_GCC_LIBS "Statically link libgcc/libstdc++" OFF)
+
 if (MSVC)
   set (CMAKE_MFC_FLAG 0)
   set (WIN_COMPILE_FLAGS "")
@@ -536,7 +628,7 @@ if (MSVC)
 endif ()
 
 set (MAKE_SYSTEM)
-if (CMAKE_BUILD_TOOL MATCHES "make")
+if (CMAKE_MAKE_PROGRAM MATCHES "make")
   set (MAKE_SYSTEM 1)
 endif ()
 
@@ -616,10 +708,14 @@ if (HDF5_ENABLE_PARALLEL)
 
     # Used by Parallel Compression feature
     set (PARALLEL_FILTERED_WRITES ON)
-    CHECK_SYMBOL_EXISTS (MPI_Mprobe "mpi.h" H5_HAVE_MPI_Mprobe)
-    CHECK_SYMBOL_EXISTS (MPI_Imrecv "mpi.h" H5_HAVE_MPI_Imrecv)
-    if (NOT H5_HAVE_MPI_Mprobe OR NOT H5_HAVE_MPI_Imrecv)
-      message (WARNING "The MPI_Mprobe and/or MPI_Imrecv functions could not be located.
+    CHECK_SYMBOL_EXISTS (MPI_Ibarrier "mpi.h" H5_HAVE_MPI_Ibarrier)
+    CHECK_SYMBOL_EXISTS (MPI_Issend "mpi.h" H5_HAVE_MPI_Issend)
+    CHECK_SYMBOL_EXISTS (MPI_Iprobe "mpi.h" H5_HAVE_MPI_Iprobe)
+    CHECK_SYMBOL_EXISTS (MPI_Irecv "mpi.h" H5_HAVE_MPI_Irecv)
+    if (H5_HAVE_MPI_Ibarrier AND H5_HAVE_MPI_Issend AND H5_HAVE_MPI_Iprobe AND H5_HAVE_MPI_Irecv)
+      set (H5_HAVE_PARALLEL_FILTERED_WRITES 1)
+    else ()
+      message (WARNING "The MPI_Ibarrier/MPI_Issend/MPI_Iprobe/MPI_Irecv functions could not be located.
                Parallel writes of filtered data will be disabled.")
       set (PARALLEL_FILTERED_WRITES OFF)
     endif ()
@@ -717,48 +813,60 @@ endif ()
 option (HDF5_ENABLE_THREADSAFE "Enable thread-safety" OFF)
 if (HDF5_ENABLE_THREADSAFE)
   # check for unsupported options
-  if (WIN32 OR MINGW)
-    message (STATUS " **** thread-safety option not supported with static library **** ")
-    message (STATUS " **** thread-safety option will not be used building static library **** ")
+  if (WIN32)
+    if (CMAKE_VERSION VERSION_GREATER_EQUAL "3.15.0")
+      message (VERBOSE " **** thread-safety option not supported with static library **** ")
+      message (VERBOSE " **** thread-safety option will not be used building static library **** ")
+    endif ()
   endif ()
   if (HDF5_ENABLE_PARALLEL)
     if (NOT ALLOW_UNSUPPORTED)
-      message (FATAL_ERROR " **** parallel and thread-safety options are not supported **** ")
+      message (FATAL_ERROR " **** parallel and thread-safety options are not supported, override with ALLOW_UNSUPPORTED option **** ")
     else ()
-      message (STATUS " **** Allowing unsupported parallel and thread-safety options **** ")
+      if (CMAKE_VERSION VERSION_GREATER_EQUAL "3.15.0")
+        message (VERBOSE " **** Allowing unsupported parallel and thread-safety options **** ")
+      endif ()
     endif ()
   endif ()
   if (HDF5_BUILD_FORTRAN)
     if (NOT ALLOW_UNSUPPORTED)
-      message (FATAL_ERROR " **** Fortran and thread-safety options are not supported **** ")
+      message (FATAL_ERROR " **** Fortran and thread-safety options are not supported, override with ALLOW_UNSUPPORTED option **** ")
     else ()
-      message (STATUS " **** Allowing unsupported Fortran and thread-safety options **** ")
+      if (CMAKE_VERSION VERSION_GREATER_EQUAL "3.15.0")
+        message (VERBOSE " **** Allowing unsupported Fortran and thread-safety options **** ")
+      endif ()
     endif ()
   endif ()
   if (HDF5_BUILD_CPP_LIB)
     if (NOT ALLOW_UNSUPPORTED)
-      message (FATAL_ERROR " **** C++ and thread-safety options are not supported **** ")
+      message (FATAL_ERROR " **** C++ and thread-safety options are not supported, override with ALLOW_UNSUPPORTED option **** ")
     else ()
-      message (STATUS " **** Allowing unsupported C++ and thread-safety options **** ")
+      if (CMAKE_VERSION VERSION_GREATER_EQUAL "3.15.0")
+        message (VERBOSE " **** Allowing unsupported C++ and thread-safety options **** ")
+      endif ()
     endif ()
   endif ()
   if (HDF5_BUILD_HL_LIB)
     if (NOT ALLOW_UNSUPPORTED)
-      message (FATAL_ERROR " **** HL and thread-safety options are not supported **** ")
+      message (FATAL_ERROR " **** HL and thread-safety options are not supported, override with ALLOW_UNSUPPORTED option **** ")
     else ()
-      message (STATUS " **** Allowing unsupported HL and thread-safety options **** ")
+      if (CMAKE_VERSION VERSION_GREATER_EQUAL "3.15.0")
+        message (VERBOSE " **** Allowing unsupported HL and thread-safety options **** ")
+      endif ()
     endif ()
   endif ()
   if (H5_HAVE_IOEO)
-    message (STATUS " **** Win32 threads requires WINVER>=0x600 (Windows Vista/7/8) **** ")
+    if (CMAKE_VERSION VERSION_GREATER_EQUAL "3.15.0")
+      message (VERBOSE " **** Win32 threads requires WINVER>=0x600 (Windows Vista/7/8) **** ")
+    endif ()
     set (H5_HAVE_WIN_THREADS 1)
   else ()
     if (NOT H5_HAVE_PTHREAD_H)
       message (FATAL_ERROR " **** thread-safe option requires Win32 threads or Pthreads **** ")
     endif ()
   endif ()
-  set(THREADS_PREFER_PTHREAD_FLAG ON)
-  find_package(Threads REQUIRED)
+  set (THREADS_PREFER_PTHREAD_FLAG ON)
+  find_package (Threads REQUIRED)
   if (Threads_FOUND)
     set (H5_HAVE_THREADSAFE 1)
   endif ()
@@ -780,10 +888,10 @@ add_subdirectory (src)
 if (HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "GIT" OR HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "TGZ")
   if (ZLIB_FOUND AND ZLIB_USE_EXTERNAL)
     if (NOT ONLY_SHARED_LIBS)
-      add_dependencies (${HDF5_LIB_TARGET} ZLIB)
+      add_dependencies (${HDF5_LIB_TARGET} HDF5_ZLIB)
     endif ()
     if (BUILD_SHARED_LIBS)
-      add_dependencies (${HDF5_LIBSH_TARGET} ZLIB)
+      add_dependencies (${HDF5_LIBSH_TARGET} HDF5_ZLIB)
     endif ()
   endif ()
   if (SZIP_FOUND AND SZIP_USE_EXTERNAL)
@@ -796,6 +904,21 @@ if (HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "GIT" OR HDF5_ALLOW_EXTERNAL_SUPPORT MAT
   endif ()
 endif ()
 
+#-----------------------------------------------------------------------------
+# Option to build documentation
+#-----------------------------------------------------------------------------
+option (HDF5_BUILD_DOC "Build documentation" OFF)
+if (HDF5_BUILD_DOC AND EXISTS "${HDF5_DOXYGEN_DIR}" AND IS_DIRECTORY "${HDF5_DOXYGEN_DIR}")
+# check if Doxygen is installed
+  find_package(Doxygen)
+  if (DOXYGEN_FOUND)
+    message(STATUS "Doxygen version: ${DOXYGEN_VERSION}")
+    add_subdirectory (doxygen)
+  else ()
+    message(STATUS "Doxygen needs to be installed to generate the doxygen documentation")
+  endif ()
+endif ()
+
 #-----------------------------------------------------------------------------
 # Dashboard and Testing Settings
 #-----------------------------------------------------------------------------
@@ -816,6 +939,9 @@ if (BUILD_TESTING)
   if (HDF5_TEST_VFD)
     option (HDF5_TEST_FHEAP_VFD "Execute tests with different VFDs" ON)
     mark_as_advanced (HDF5_TEST_FHEAP_VFD)
+
+    # Initialize the list of VFDs to be used for testing and create a test folder for each VFD
+    H5_SET_VFD_LIST()
   endif ()
 
   option (HDF5_TEST_PASSTHROUGH_VOL "Execute tests with different passthrough VOL connectors" OFF)
@@ -834,6 +960,30 @@ if (BUILD_TESTING)
   include (${HDF5_SOURCE_DIR}/CTestConfig.cmake)
   configure_file (${HDF_RESOURCES_DIR}/CTestCustom.cmake ${HDF5_BINARY_DIR}/CTestCustom.ctest @ONLY)
 
+  option (HDF5_TEST_SERIAL "Execute non-parallel tests" ON)
+  mark_as_advanced (HDF5_TEST_SERIAL)
+
+  option (HDF5_TEST_TOOLS "Execute tools tests" ON)
+  mark_as_advanced (HDF5_TEST_TOOLS)
+
+  option (HDF5_TEST_EXAMPLES "Execute tests on examples" ON)
+  mark_as_advanced (HDF5_TEST_EXAMPLES)
+
+  option (HDF5_TEST_SWMR "Execute SWMR tests" ON)
+  mark_as_advanced (HDF5_TEST_SWMR)
+
+  option (HDF5_TEST_PARALLEL "Execute parallel tests" ON)
+  mark_as_advanced (HDF5_TEST_PARALLEL)
+
+  option (HDF5_TEST_FORTRAN "Execute fortran tests" ON)
+  mark_as_advanced (HDF5_TEST_FORTRAN)
+
+  option (HDF5_TEST_CPP "Execute cpp tests" ON)
+  mark_as_advanced (HDF5_TEST_CPP)
+
+  option (HDF5_TEST_JAVA "Execute java tests" ON)
+  mark_as_advanced (HDF5_TEST_JAVA)
+
   if (NOT HDF5_EXTERNALLY_CONFIGURED)
     if (EXISTS "${HDF5_SOURCE_DIR}/test" AND IS_DIRECTORY "${HDF5_SOURCE_DIR}/test")
       add_subdirectory (test)
@@ -846,6 +996,13 @@ if (BUILD_TESTING)
   endif ()
 endif ()
 
+#-----------------------------------------------------------------------------
+# Option to build HDF5 Utilities
+#-----------------------------------------------------------------------------
+if (EXISTS "${HDF5_SOURCE_DIR}/utils" AND IS_DIRECTORY "${HDF5_SOURCE_DIR}/utils")
+  add_subdirectory (utils)
+endif ()
+
 #-----------------------------------------------------------------------------
 # Option to build HDF5 Tools
 #-----------------------------------------------------------------------------
@@ -856,6 +1013,21 @@ if (EXISTS "${HDF5_SOURCE_DIR}/tools" AND IS_DIRECTORY "${HDF5_SOURCE_DIR}/tools
   endif ()
 endif ()
 
+#-----------------------------------------------------------------------------
+# Include filter plugins
+#-----------------------------------------------------------------------------
+include (CMakePlugins.cmake)
+
+if (HDF5_PACKAGE_EXTLIBS AND NOT HDF5_NO_PACKAGES)
+  if (HDF5_ENABLE_PLUGIN_SUPPORT AND PLUGIN_FOUND)
+    PACKAGE_PLUGIN_LIBRARY (${HDF5_ALLOW_EXTERNAL_SUPPORT})
+#    option (HDF5_TEST_PLUGIN "Execute plugin tests" ON)
+#    mark_as_advanced (HDF5_TEST_PLUGIN)
+
+#    TEST_PLUGIN_LIBRARY ()
+  endif ()
+endif ()
+
 #-----------------------------------------------------------------------------
 # Option to build examples
 #-----------------------------------------------------------------------------
@@ -890,13 +1062,10 @@ if (EXISTS "${HDF5_SOURCE_DIR}/fortran" AND IS_DIRECTORY "${HDF5_SOURCE_DIR}/for
   if (HDF5_BUILD_FORTRAN)
     include (${HDF_RESOURCES_EXT_DIR}/HDFUseFortran.cmake)
 
-    message (STATUS "Fortran compiler ID is ${CMAKE_Fortran_COMPILER_ID}")
-    # Building with PGI requires CMake 3.3 or greater  because previous versions
-    # of CMake add the wrong compiler flag for the PGI Fortran compiler.
-    if (CMAKE_Fortran_COMPILER_ID MATCHES "PGI" AND CMAKE_VERSION VERSION_LESS "3.3")
-      message (FATAL_ERROR " **** PGI FORTRAN REQUIRES CMAKE VERSION 3.3 OR GREATER **** ")
+    if (CMAKE_VERSION VERSION_GREATER_EQUAL "3.15.0")
+      message (VERBOSE "Fortran compiler ID is ${CMAKE_Fortran_COMPILER_ID}")
     endif ()
-
+    include (${HDF_RESOURCES_DIR}/HDFFortranCompilerFlags.cmake)
     include (${HDF_RESOURCES_DIR}/HDF5UseFortran.cmake)
     set (LINK_Fortran_LIBS ${LINK_LIBS})
 
@@ -912,6 +1081,17 @@ if (EXISTS "${HDF5_SOURCE_DIR}/fortran" AND IS_DIRECTORY "${HDF5_SOURCE_DIR}/for
       endif ()
     endif ()
 
+    #option (HDF5_INSTALL_MOD_FORTRAN "Copy FORTRAN mod files to include directory (NO SHARED STATIC)" "NO")
+    set (HDF5_INSTALL_MOD_FORTRAN "SHARED" CACHE STRING "Copy FORTRAN mod files to include directory (NO SHARED STATIC)")
+    set_property (CACHE HDF5_INSTALL_MOD_FORTRAN PROPERTY STRINGS NO SHARED STATIC)
+    if (NOT HDF5_INSTALL_MOD_FORTRAN MATCHES "NO")
+      if (NOT BUILD_SHARED_LIBS AND BUILD_STATIC_LIBS)
+        set (HDF5_INSTALL_MOD_FORTRAN "STATIC")
+      elseif (BUILD_SHARED_LIBS AND NOT BUILD_STATIC_LIBS)
+        set (HDF5_INSTALL_MOD_FORTRAN "SHARED")
+      endif ()
+    endif ()
+
     add_subdirectory (fortran)
     if (HDF5_BUILD_HL_LIB)
       if (EXISTS "${HDF5_SOURCE_DIR}/hl/fortran" AND IS_DIRECTORY "${HDF5_SOURCE_DIR}/hl/fortran")
@@ -926,22 +1106,21 @@ endif ()
 # Option to build HDF5 C++ Library
 #-----------------------------------------------------------------------------
 if (EXISTS "${HDF5_SOURCE_DIR}/c++" AND IS_DIRECTORY "${HDF5_SOURCE_DIR}/c++")
-  option (HDF5_BUILD_CPP_LIB  "Build HDF5 C++ Library" ON)
+  option (HDF5_BUILD_CPP_LIB  "Build HDF5 C++ Library" OFF)
   if (HDF5_BUILD_CPP_LIB)
     # check for unsupported options
     if (HDF5_ENABLE_PARALLEL)
       if (NOT ALLOW_UNSUPPORTED)
-        message (FATAL_ERROR " **** Parallel and C++ options are mutually exclusive **** ")
+        message (FATAL_ERROR " **** Parallel and C++ options are mutually exclusive, override with ALLOW_UNSUPPORTED option **** ")
       else ()
-        message (STATUS " **** Allowing unsupported Parallel and C++ options **** ")
+        if (CMAKE_VERSION VERSION_GREATER_EQUAL "3.15.0")
+          message (VERBOSE " **** Allowing unsupported Parallel and C++ options **** ")
+        endif ()
       endif ()
     endif ()
 
-    include (${HDF_RESOURCES_EXT_DIR}/HDFUseCXX.cmake)
+    include (${HDF_RESOURCES_DIR}/HDFCXXCompilerFlags.cmake)
 
-    if (CMAKE_NO_STD_NAMESPACE)
-      set (H5_NO_STD 1)
-    endif ()
     add_subdirectory (c++)
     if (HDF5_BUILD_HL_LIB)
       if (EXISTS "${HDF5_SOURCE_DIR}/hl/c++" AND IS_DIRECTORY "${HDF5_SOURCE_DIR}/hl/c++")
@@ -975,7 +1154,7 @@ endif ()
 #-----------------------------------------------------------------------------
 # Generate the H5pubconf.h file containing user settings needed by compilation
 #-----------------------------------------------------------------------------
-configure_file (${HDF_RESOURCES_DIR}/H5pubconf.h.in ${HDF5_BINARY_DIR}/H5pubconf.h @ONLY)
+configure_file (${HDF_RESOURCES_DIR}/H5pubconf.h.in ${HDF5_SRC_BINARY_DIR}/H5pubconf.h @ONLY)
 
 #-----------------------------------------------------------------------------
 # Options for use by cross compiling and toolchains

CMakePlugins.cmake

@@ -0,0 +1,56 @@
+#
+# Copyright by The HDF Group.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the COPYING file, which can be found at the root of the source code
+# distribution tree, or in https://www.hdfgroup.org/licenses.
+# If you do not have access to either file, you may request a copy from
+# help@hdfgroup.org.
+#
+
+include (ExternalProject)
+#option (HDF5_ALLOW_EXTERNAL_SUPPORT "Allow External Library Building (NO GIT TGZ)" "NO")
+set (HDF5_ALLOW_EXTERNAL_SUPPORT "NO" CACHE STRING "Allow External Library Building (NO GIT TGZ)")
+set_property (CACHE HDF5_ALLOW_EXTERNAL_SUPPORT PROPERTY STRINGS NO GIT TGZ)
+if (HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "GIT" OR HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "TGZ")
+  option (PLUGIN_USE_EXTERNAL "Use External Library Building for filter PLUGIN" 1)
+  if (HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "GIT")
+    set (PLUGIN_URL ${PLUGIN_GIT_URL} CACHE STRING "Path to PLUGIN git repository")
+    set (PLUGIN_BRANCH ${PLUGIN_GIT_BRANCH})
+  elseif (HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "TGZ")
+    if (NOT TGZPATH)
+      set (TGZPATH ${HDF5_SOURCE_DIR})
+    endif ()
+    set (PLUGIN_URL ${TGZPATH}/${PLUGIN_TGZ_NAME})
+    if (NOT EXISTS "${PLUGIN_URL}")
+      set (HDF5_ENABLE_PLUGIN_SUPPORT OFF CACHE BOOL "" FORCE)
+      message (STATUS "Filter PLUGIN file ${PLUGIN_URL} not found")
+    endif ()
+  else ()
+    set (PLUGIN_USE_EXTERNAL 0)
+  endif ()
+endif ()
+
+#-----------------------------------------------------------------------------
+# Option for PLUGIN support
+#-----------------------------------------------------------------------------
+option (HDF5_ENABLE_PLUGIN_SUPPORT "Enable PLUGIN Filters" OFF)
+if (HDF5_ENABLE_PLUGIN_SUPPORT)
+  if (NOT PLUGIN_USE_EXTERNAL)
+    find_package (PLUGIN NAMES ${PLUGIN_PACKAGE_NAME}${HDF_PACKAGE_EXT})
+    if (NOT PLUGIN_FOUND)
+      find_package (PLUGIN) # Legacy find
+    endif ()
+  endif ()
+  if (NOT PLUGIN_FOUND)
+    if (HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "GIT" OR HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "TGZ")
+      EXTERNAL_PLUGIN_LIBRARY (${HDF5_ALLOW_EXTERNAL_SUPPORT})
+      message (STATUS "Filter PLUGIN is built")
+    else ()
+      message (FATAL_ERROR " PLUGIN is Required for PLUGIN support in HDF5")
+    endif ()
+  endif ()
+  message (STATUS "Filter PLUGIN is ON")
+endif ()

COPYING

@@ -67,6 +67,12 @@ under Prime Contract No. DE-AC02-05CH11231.
 
 -----------------------------------------------------------------------------
 
+Portions of HDF5 were developed with support from Lawrence Livermore 
+National Laboratory and the United States Department of Energy under 
+Prime Contract No. DE-AC52-07NA27344.
+
+-----------------------------------------------------------------------------
+
 Portions of HDF5 were developed with support from the University of 
 California, Lawrence Livermore National Laboratory (UC LLNL).  
 The following statement applies to those portions of the product and must 
@@ -97,10 +103,4 @@ and/or accompanying materials:
 
 -----------------------------------------------------------------------------
 
-HDF5 is available with the SZIP compression library but SZIP is not part 
-of HDF5 and has separate copyright and license terms. See SZIP Compression 
-in HDF Products (www.hdfgroup.org/doc_resource/SZIP/) for further details.
-
------------------------------------------------------------------------------
-
 

CTestConfig.cmake

@@ -5,7 +5,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #
@@ -18,7 +18,7 @@
 set (CTEST_PROJECT_NAME "HDF5")
 set (CTEST_NIGHTLY_START_TIME "18:00:00 CST")
 
-set (CTEST_DROP_METHOD "http")
+set (CTEST_DROP_METHOD "https")
 if (CTEST_DROP_SITE_INIT)
   set (CTEST_DROP_SITE "${CTEST_DROP_SITE_INIT}")
 else ()
@@ -32,7 +32,7 @@ if (CTEST_DROP_LOCATION_INIT)
   set (CTEST_DROP_LOCATION "${CTEST_DROP_LOCATION_INIT}")
 else ()
   if (CDASH_LOCAL)
-    set (CTEST_DROP_LOCATION "/submit.php?project=HDF5Trunk")
+    set (CTEST_DROP_LOCATION "/submit.php?project=HDF5112")
   else ()
     set (CTEST_DROP_LOCATION "/submit.php?project=HDF5")
   endif ()
@@ -42,8 +42,6 @@ set (CTEST_DROP_SITE_CDASH TRUE)
 set (UPDATE_TYPE git)
 set (VALGRIND_COMMAND "/usr/bin/valgrind")
 set (VALGRIND_COMMAND_OPTIONS "-v --tool=memcheck --leak-check=full --track-fds=yes --num-callers=50 --show-reachable=yes --track-origins=yes --malloc-fill=0xff --free-fill=0xfe")
-set (CTEST_MEMORYCHECK_COMMAND "/usr/bin/valgrind")
-set (CTEST_MEMORYCHECK_COMMAND_OPTIONS "-v --tool=memcheck --leak-check=full --track-fds=yes --num-callers=50 --show-reachable=yes --track-origins=yes --malloc-fill=0xff --free-fill=0xfe")
 
 set (CTEST_TEST_TIMEOUT 1200 CACHE STRING
     "Maximum time allowed before CTest will kill the test.")

Makefile.am

@@ -6,14 +6,14 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 ##
 ## Makefile.am
 ## Run automake to generate a Makefile.in from this file.
 ##
-# 
+#
 # This makefile mostly just reinvokes make in the various subdirectories
 # but does so in the correct order.  You can alternatively invoke make from
 # each subdirectory manually.
@@ -35,6 +35,9 @@
 
 include $(top_srcdir)/config/commence.am
 
+# include Doxygen rules (requires autoconf-archive >2016-03-20)
+@DX_RULES@
+
 # Define subdirectories to build.
 ## Automake understands that `make distclean' should recurse into
 ## conditional subdirectories even if `make all' does not.
@@ -45,7 +48,7 @@ include $(top_srcdir)/config/commence.am
 # Since we're explicitly listing DIST_SUBDIRS, we also need to list
 # directories that are only conditionally built (so that their Makefiles
 # are cleaned as well).
-# Note that `make clean' will not affect the examples or doc directories. 
+# Note that `make clean' will not affect the examples or doc directories.
 
 # Conditionals.  These conditionals are defined during configure
 # Define each variable to empty if it is not used to placate pmake
@@ -85,9 +88,9 @@ else
    TOOLS_DIR=
 endif
 
-SUBDIRS = src $(TESTSERIAL_DIR) $(TESTPARALLEL_DIR) bin $(TOOLS_DIR) . \
+SUBDIRS = src $(TESTSERIAL_DIR) $(TESTPARALLEL_DIR) bin utils $(TOOLS_DIR) . \
           $(CXX_DIR) $(FORTRAN_DIR) $(JAVA_DIR) $(HDF5_HL_DIR)
-DIST_SUBDIRS = src test testpar tools . c++ fortran hl examples java
+DIST_SUBDIRS = src test testpar utils tools . c++ fortran hl examples java
 
 # Some files generated during configure that should be cleaned
 DISTCLEANFILES=config/stamp1 config/stamp2
@@ -133,7 +136,7 @@ mostlyclean-local:
 # 'make install' will now install examples, the same as 'make install-all'.
 # 'make-install-all' will be redundant but will still work.
 install: install-recursive install-examples
-uninstall: uninstall-recursive uninstall-examples 
+uninstall: uninstall-recursive uninstall-examples
 
 # 'make install-all' also installs examples
 install-all:
@@ -154,7 +157,7 @@ install-doc:
 uninstall-doc:
 	@echo "docs no longer live in this tree.  Use install-examples to install examples."
 
-# `make check-install' or `make installcheck' checks that examples can 
+# `make check-install' or `make installcheck' checks that examples can
 #  be successfully built
 installcheck-local:
 	if test -n "${DESTDIR}"; then                                  \
@@ -187,13 +190,18 @@ check-all-install:
 trace:
 	@(cd src && $(MAKE) $(AM_MAKEFLAGS) $@) || exit 1;
 
+# doxygen support
+if BUILD_DOXYGEN_CONDITIONAL
+doxygen: doxygen-doc
+endif
+
 # Run tests with different Virtual File Drivers.
 # Currently, only invoke check-vfd in the test directory.
 check-vfd:
-	for d in src test; do                                 \
-	  if test $$d != .; then                                       \
-	    (cd $$d && $(MAKE) $(AM_MAKEFLAGS) $@) || exit 1;          \
-	  fi;                                                          \
+	for d in src utils test; do                                     \
+	  if test $$d != .; then                                        \
+	    (cd $$d && $(MAKE) $(AM_MAKEFLAGS) $@) || exit 1;           \
+	  fi;                                                           \
 	done
 
 # Run tests with different passthrough Virtual Object Layer Connectors.

Makefile.dist

@@ -7,7 +7,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 

README.md

@@ -1,39 +1,41 @@
-HDF5 version 1.11.6 currently under development
+HDF5 version 1.12.2 released on 2022-04-19
 
-------------------------------------------------------------------------------
-Please refer to the release_docs/INSTALL file for installation instructions.
-------------------------------------------------------------------------------
+![HDF5 Logo](doxygen/img/HDF5.png)
+
+*Please refer to the release_docs/INSTALL file for installation instructions.*
 
 THE HDF GROUP
 ---------------
 
-The HDF Group is the developer of HDF5®, a high-performance software library and 
-data format that has been adopted across multiple industries and has become a 
+The HDF Group is the developer of HDF5®, a high-performance software library and
+data format that has been adopted across multiple industries and has become a
 de facto standard in scientific and research communities.
 
 More information about The HDF Group, the HDF5 Community and the HDF5 software
 project, tools and services can be found at the Group's website.
-
-    https://www.hdfgroup.org/
+    
+   https://www.hdfgroup.org/
 
 
 DOCUMENTATION
 -------------
-This release is fully functional for the API described in the documentation. 
-    https://portal.hdfgroup.org/display/HDF5/The+HDF5+API
+This release is fully functional for the API described in the documentation.
+    
+   https://portal.hdfgroup.org/display/HDF5/The+HDF5+API
 
 Full Documentation and Programming Resources for this release can be found at
-    https://portal.hdfgroup.org/display/HDF5
 
-See the RELEASE.txt file in the release_docs/ directory for information specific 
-to the features and updates included in this release of the library. 
+   https://portal.hdfgroup.org/display/HDF5
 
-Several more files are located within the release_docs/ directory with specific 
+See the RELEASE.txt file in the release_docs/ directory for information specific
+to the features and updates included in this release of the library.
+
+Several more files are located within the release_docs/ directory with specific
 details for several common platforms and configurations.
 
     INSTALL - Start Here. General instructions for compiling and installing the library
     INSTALL_CMAKE  - instructions for building with CMake (Kitware.com)
-    INSTALL_parallel - instructions for building and configuring Parallel HDF5 
+    INSTALL_parallel - instructions for building and configuring Parallel HDF5
     INSTALL_Windows and INSTALL_Cygwin - MS Windows installations.
 
 
@@ -42,39 +44,62 @@ HELP AND SUPPORT
 ----------------
 Information regarding Help Desk and Support services is available at
 
-    https://portal.hdfgroup.org/display/support/The+HDF+Help+Desk
+   https://portal.hdfgroup.org/display/support/The+HDF+Help+Desk
 
 
 
 FORUM and NEWS
 --------------
-The following public forums are provided for public announcements and discussions 
+The following public forums are provided for public announcements and discussions
 of interest to the general HDF5 Community.
 
-    Homepage of the Forum
-        https://forum.hdfgroup.org
+   - Homepage of the Forum
+   https://forum.hdfgroup.org
 
-    News and Announcement
-        https://forum.hdfgroup.org/c/news-and-announcements-from-the-hdf-group
+   - News and Announcement
+   https://forum.hdfgroup.org/c/news-and-announcements-from-the-hdf-group
 
-    HDF5 and HDF4 Topics
-        https://forum.hdfgroup.org/c/hdf5
- 
-These forums are provided as an open and public service for searching and reading. 
-Posting requires completing a simple registration and allows one to join in the 
-conversation.  Please read the following instructions pertaining to the Forum's 
+   - HDF5 and HDF4 Topics
+   https://forum.hdfgroup.org/c/hdf5
+
+These forums are provided as an open and public service for searching and reading.
+Posting requires completing a simple registration and allows one to join in the
+conversation.  Please read the following instructions pertaining to the Forum's
 use and configuration
     https://forum.hdfgroup.org/t/quickstart-guide-welcome-to-the-new-hdf-forum
 
 
+RELEASE SCHEDULE
+----------------
+
+![HDF5 release schedule](doc/img/release-schedule.png) 
+
+HDF5 does not release on a regular schedule. Instead, releases are driven by
+new features and bug fixes, though we try to have at least one release of each
+maintenance branch per year. Future HDF5 releases indicated on this schedule
+are tentative. 
+
+| Release | New Features |
+| ------- | ------------ |
+| 1.13.2 | VFD SWMR, Onion VFD, Selection I/O |
+| 1.13.3 | Multi-Dataset I/O |
+| 1.13.4 | Subfiling |
+
+This list of feature release versions is also tentative, and the specific release
+in which a feature is introduced may change.
+
+
 SNAPSHOTS, PREVIOUS RELEASES AND SOURCE CODE
 --------------------------------------------
 Periodically development code snapshots are provided at the following URL:
-    https://gamma.hdfgroup.org/ftp/pub/outgoing/hdf5/snapshots/
+    
+   https://gamma.hdfgroup.org/ftp/pub/outgoing/hdf5/snapshots/
 
 Source packages for current and previous releases are located at:
-    https://portal.hdfgroup.org/display/support/Downloads
+    
+   https://portal.hdfgroup.org/display/support/Downloads
 
-Development code is available at our BitBucket Server:
-    https://bitbucket.hdfgroup.org/projects/HDFFV/repos/hdf5/browse
+Development code is available at our Github location:
+    
+   https://github.com/HDFGroup/hdf5.git
 

UserMacros.cmake

@@ -5,7 +5,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #

acsite.m4

@@ -8,7 +8,7 @@ dnl
 dnl This file is part of HDF5.  The full HDF5 copyright notice, including
 dnl terms governing use, modification, and redistribution, is contained in
 dnl the COPYING file, which can be found at the root of the source code
-dnl dnl distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+dnl dnl distribution tree, or in https://www.hdfgroup.org/licenses.
 dnl dnl If you do not have access to either file, you may request a copy from
 dnl dnl help@hdfgroup.org.
 dnl
@@ -21,9 +21,9 @@ dnl -------------------------------------------------------------------------
 dnl _AC_SYS_LARGEFILE_MACRO_VALUE
 dnl
 dnl The following macro overrides the autoconf macro of the same name
-dnl with this custom definition. This macro performs the same checks as 
+dnl with this custom definition. This macro performs the same checks as
 dnl autoconf's native _AC_SYS_LARGEFILE_MACRO_VALUE, but will also set
-dnl AM_CPPFLAGS with the appropriate -D defines so additional configure 
+dnl AM_CPPFLAGS with the appropriate -D defines so additional configure
 dnl sizeof checks do not fail.
 dnl
 # _AC_SYS_LARGEFILE_MACRO_VALUE(C-MACRO, VALUE,

autogen.sh

@@ -6,7 +6,7 @@
 # This file is part of HDF5. The full HDF5 copyright notice, including     
 # terms governing use, modification, and redistribution, is contained in   
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #

bin/COPYING

@@ -1,13 +0,0 @@
-
-  Copyright by  The HDF Group and 
-                The Board of Trustees of the University of Illinois. 
-  All rights reserved. 
-
-  The files and subdirectories in this directory are part of HDF5.  
-  The full HDF5 copyright notice, including terms governing use, 
-  modification, and redistribution, is contained in the COPYING file
-  which can be found at the root of the source code distribution tree
-  or in https://support.hdfgroup.org/ftp/HDF5/releases.  If you do
-  not have access to either file, you may request a copy from 
-  help@hdfgroup.org. 
-

bin/Makefile.am

@@ -6,7 +6,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 ##

bin/README

@@ -1,2 +0,0 @@
-The daily tests run copies of some of the scripts in this directory from another repository, notably snapshot and runtest.  The copies in this directory should work, but are not used in daily tests, though they should be tested occasionally.  
-

bin/batch/ctestP.sl.in.cmake

@@ -10,5 +10,5 @@
 cd @HDF5_BINARY_DIR@
 ctest . -R MPI_TEST_ -C Release -T test >& ctestP.out
 
-echo "Done running ctestP.sl" 
+echo "Done running ctestP.sl"
 

bin/bbrelease

@@ -7,39 +7,20 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #
 
 # Make a release of hdf5.
 #
-# Programmer: Robb Matzke
-# Creation date: on or before 1998-01-29.
+#   NOTE:
+#   This script differs from bin/release in that this has an added
+#   --revision option to create private releases with the code revision
+#   hash in the version strings.
 #
-# Modifications
-#   Robb Matzke, 1999-07-16
-#   The SunOS 5.6 sed *must* have slashes as delimiters. I changed things like
-#   `sed s+/CVS++' to `sed 's/\/CVS//'
-#
-#   Albert Cheng, 1999-10-26
-#   Moved the MANIFEST checking to a separate command file so that
-#   it can be invoked individually.
-#
-#   Albert Cheng, 2004-08-14
-#   Added the --private option.
-#
-#   James Laird, 2005-09-07
-#   Added the md5 method.
-#
-#   Larry Knox, 2016-08-30
-#   Added the --revision option to create private releases with the 
-#   code revision hash in the version strings. Currently the version
-#   of this script with the --revision option is named bbrelease. It 
-#   can probably be merged into the original release script in the
-#   future.
-#   Commands to get the revision hash have now been converted to git
-#   to match the source repository change.
+#   This script can probably be merged into the original release script in
+#   the future.
 
 # Function definitions
 #
@@ -47,26 +28,25 @@
 USAGE()
 {
 cat << EOF
-Usage: $0 -d <dir> [--docver BRANCHNAME] [-h] [--nocheck] [--private] <methods> ...
-   -d DIR	The name of the directory where the releas(es) should be
+Usage: $0 -d <dir> [--docver BRANCHNAME] [-h] [--private] [--revision] <methods> ...
+   -d DIR       The name of the directory where the release(s) should be
                 placed.
    --docver BRANCHNAME  This is added for 1.8 and beyond to get the correct
                         version of documentation files from the hdf5docs
                         repository.  BRANCHNAME for v1.8 should be hdf5_1_8.
    -h           print the help page.
-   --nocheck	Ignore errors in MANIFEST file.
-   --private	Make a private release with today's date in version information.
-   --revision	Make a private release with the code revision number in version information.
-         
+   --private    Make a private release with today's date in version information.
+   --revision   Make a private release with the code revision number in version information.
+
 This must be run at the top level of the source directory.
 The other command-line options are the names of the programs to use
 for compressing the resulting tar archive (if none are given then
 "tar" is assumed):
 
-    tar		-- use tar and don't do any compressing.
-    gzip	-- use gzip with "-9" and append ".gz" to the output name.
+    tar         -- use tar and don't do any compressing.
+    gzip        -- use gzip with "-9" and append ".gz" to the output name.
     bzip2       -- use bzip2 with "-9" and append ".bz2" to the output name.
-    zip		-- convert all text files to DOS style and form a zip file for Windows use.
+    zip         -- convert all text files to DOS style and form a zip file for Windows use.
     doc         -- produce the latest doc tree in addition to the archive.
 
 An md5 checksum is produced for each archive created and stored in the md5 file.
@@ -97,15 +77,10 @@ EOF
 # Function name: tar2zip
 # Convert the release tarball to a Windows zipball.
 #
-# Programmer: Albert Cheng
-# Creation date: 2014-04-23
-#
-# Modifications
-#
 # Steps:
-# 1. untar the tarball in a temporay directory;
+# 1. untar the tarball in a temporary directory;
 #    Note: do this in a temporary directory to avoid changing
-#    the original source directory which maybe around.
+#    the original source directory which may be around.
 # 2. convert all its text files to DOS (LF-CR) style;
 # 3. form a zip file which is usable by Windows users.
 #
@@ -119,8 +94,8 @@ EOF
 tar2zip()
 {
     if [ $# -ne 3 ]; then
-	echo "usage: tar2zip <tarfilename> <zipfilename>"
-	return 1
+        echo "usage: tar2zip <tarfilename> <zipfilename>"
+        return 1
     fi
     ztmpdir=/tmp/tmpdir$$
     mkdir -p $ztmpdir
@@ -132,23 +107,23 @@ tar2zip()
     (cd $ztmpdir; tar xf -) < $tarfile
     # sanity check
     if [ ! -d $ztmpdir/$version ]; then
-	echo "untar did not create $ztmpdir/$version source dir"
-	# cleanup
-	rm -rf $ztmpdir
-	return 1
+        echo "untar did not create $ztmpdir/$version source dir"
+        # cleanup
+        rm -rf $ztmpdir
+        return 1
     fi
     # step 2: convert text files
     # There maybe a simpler way to do this.
     # options used in unix2dos:
-    # -k   Keep the date stamp 
+    # -k   Keep the date stamp
     # -q   quiet mode
     # grep redirect output to /dev/null because -q or -s are not portable.
     find $ztmpdir/$version | \
-	while read inf; do \
-	    if file $inf | grep "$inf\: .*text" > /dev/null 2>&1 ; then \
-		unix2dos -q -k $inf; \
-	    fi\
-	done
+        while read inf; do \
+            if file $inf | grep "$inf\: .*text" > /dev/null 2>&1 ; then \
+                unix2dos -q -k $inf; \
+            fi\
+        done
     # step 3: make zipball
     # -9 maximum compression
     # -y Store symbolic links as such in the zip archive
@@ -163,14 +138,6 @@ tar2zip()
 
 # This command must be run at the top level of the hdf5 source directory.
 # Verify this requirement.
-# Since we are running bbrelease to create an HDF5 source tarfile for buildbot
-# testing with source that is not for release, there is not a file named
-# "configure" but there will be one named "configure.ac".  The "configure"
-# file will be created when autogen.sh runs. There probably will always
-# be a bin/release file, but just in case it is removed, we can check for 
-# this script, bbrelease, in the bin directory.  The bin/release script should
-# continue to check for "configure" because it should be present in release 
-# source.
 if [ ! \( -f configure.ac -a -f bin/bbrelease \) ]; then
     echo "$0 must be run at the top level of the hdf5 source directory"
     exit 1
@@ -182,12 +149,11 @@ VERS=`perl bin/h5vers`
 VERS_OLD=
 test "$VERS" || exit 1
 verbose=yes
-check=yes
 release_date=`date +%F`
 today=`date +%Y%m%d`
 pmode='no'
 revmode='no'
-tmpdir="../#release_tmp.$$"	# tmp work directory
+tmpdir="../#release_tmp.$$"     # tmp work directory
 DOC_URL=https://git@bitbucket.hdfgroup.org/scm/hdffv/hdf5doc.git
 CPPLUS_RM_NAME=cpplus_RM
 
@@ -195,11 +161,11 @@ CPPLUS_RM_NAME=cpplus_RM
 RESTORE_VERSION()
 {
     if [ X-${VERS_OLD} != X- ]; then
-	echo restoring version information back to $VERS_OLD
-	rm -f config/lt_vers.am
-	cp $tmpdir/lt_vers.am config/lt_vers.am
-	bin/h5vers -s $VERS_OLD
-	VERS_OLD=
+        echo restoring version information back to $VERS_OLD
+        rm -f config/lt_vers.am
+        cp $tmpdir/lt_vers.am config/lt_vers.am
+        bin/h5vers -s $VERS_OLD
+        VERS_OLD=
     fi
 }
 
@@ -209,20 +175,17 @@ while [ -n "$1" ]; do
     arg=$1
     shift
     case "$arg" in
-	-d)
-	    DEST=$1
-	    shift
-	    ;;
-	--nocheck)
-	    check=no
-	    ;;
-	-h)
-	    USAGE
-	    exit 0
-	    ;;
-	--private)
-	    pmode=yes
-	    ;;
+        -d)
+            DEST=$1
+            shift
+            ;;
+        -h)
+            USAGE
+            exit 0
+            ;;
+        --private)
+            pmode=yes
+            ;;
         --revision)
             revmode=yes
             ;;
@@ -230,14 +193,14 @@ while [ -n "$1" ]; do
             DOCVERSION=$1
             shift
             ;;
-	-*)
-	    echo "Unknown switch: $arg" 1>&2
-	    USAGE
-	    exit 1
-	    ;;
-	*)
-	    methods="$methods $arg"
-	    ;;
+        -*)
+            echo "Unknown switch: $arg" 1>&2
+            USAGE
+            exit 1
+            ;;
+        *)
+            methods="$methods $arg"
+            ;;
     esac
 done
 
@@ -246,7 +209,7 @@ if [ "X$methods" = "X" ]; then
     methods="tar"
 fi
 
-# Create the temporay work directory.
+# Create the temporary work directory.
 if mkdir $tmpdir; then
     echo "temporary work directory for release.  "\
          "Can be deleted after release completes." > $tmpdir/README
@@ -278,7 +241,7 @@ if [ X$revmode = Xyes ]; then
     cp config/lt_vers.am $tmpdir
     branch=`git branch | grep '*' | awk '{print $NF}'`
     revision=`git rev-parse --short HEAD`
-# Set version information to m.n.r-r$revision.
+    # Set version information to m.n.r-r$revision.
     # (h5vers does not correctly handle just m.n.r-$today.)
     VERS=`echo $VERS | sed -e s/-.*//`-$revision
     echo Private release of $VERS
@@ -299,30 +262,17 @@ if [ ! -d $DEST ]; then
     exit 1
 fi
 
-# Check the validity of the MANIFEST file.
-bin/chkmanifest || fail=yes
-if [ "X$fail" = "Xyes" ]; then
-    if [ $check = yes ]; then
-        exit 1
-    else
-	echo "Continuing anyway..."
-    fi
-fi
-
-# Create a manifest that contains only files for distribution.
-MANIFEST=$tmpdir/H5_MANIFEST
-grep '^\.' MANIFEST | grep -v _DO_NOT_DISTRIBUTE_ >$MANIFEST
-
-# Prepare the source tree for a release.
-#ln -s `pwd` $tmpdir/$HDF5_VERS || exit 1
+# Create a symlink to the source so files in the tarball have the prefix
+# we want (gnu's --transform isn't portable)
 ln -s `pwd` $tmpdir/$HDF5_IN_VERS || exit 1
+
 # Save a backup copy of Makefile if exists.
 test -f Makefile && mv Makefile $tmpdir/Makefile.x
 cp -p Makefile.dist Makefile
 
-# Update README.txt and release_docs/RELEASE.txt with release information in
+# Update README.md and release_docs/RELEASE.txt with release information in
 # line 1.
-for f in README.txt release_docs/RELEASE.txt; do
+for f in README.md release_docs/RELEASE.txt; do
     echo "HDF5 version $VERS released on $release_date" >$f.x
     sed -e 1d $f >>$f.x
     mv $f.x $f
@@ -330,64 +280,60 @@ for f in README.txt release_docs/RELEASE.txt; do
     chmod 644 $f
 done
 
-# trunk is different than branches.
+# develop is different than branches.
 if [ "${DOCVERSION}" ]; then
     DOC_URL=https://git@bitbucket.hdfgroup.org/scm/hdffv/hdf5doc.git -b ${DOCVERSION}
 fi
 
 # Create the tar file
 test "$verbose" && echo "   Running tar..." 1>&2
-( \
-    cd $tmpdir; \
-    tar cf $HDF5_VERS.tar $HDF5_IN_VERS/Makefile \
-	`sed 's/^\.\//'$HDF5_IN_VERS'\//' $MANIFEST` || exit 1 \
-)
+(cd "$tmpdir" && exec tar -ch --exclude-vcs -f "$HDF5_VERS.tar" "./$HDF5_IN_VERS" || exit 1 )
 
 # Compress
 MD5file=$HDF5_VERS.md5
 cp /dev/null $DEST/$MD5file
 for comp in $methods; do
     case $comp in
-	tar)
-	    cp -p $tmpdir/$HDF5_VERS.tar $DEST/$HDF5_VERS.tar
-	    (cd $DEST; md5sum $HDF5_VERS.tar >> $MD5file) 
-	    ;;
-	gzip)
-	    test "$verbose" && echo "   Running gzip..." 1>&2
-	    gzip -9 <$tmpdir/$HDF5_VERS.tar >$DEST/$HDF5_VERS.tar.gz
-	    (cd $DEST; md5sum $HDF5_VERS.tar.gz >> $MD5file) 
-	    ;;
-	bzip2)
-	    test "$verbose" && echo "   Running bzip2..." 1>&2
-	    bzip2 -9 <$tmpdir/$HDF5_VERS.tar >$DEST/$HDF5_VERS.tar.bz2
-	    (cd $DEST; md5sum $HDF5_VERS.tar.bz2 >> $MD5file) 
-	    ;;
-	zip)
-	    test "$verbose" && echo "   Creating zip ball..." 1>&2
-	    tar2zip $HDF5_IN_VERS $tmpdir/$HDF5_VERS.tar $DEST/$HDF5_VERS.zip 1>&2
-	    (cd $DEST; md5sum $HDF5_VERS.zip >> $MD5file) 
-	    ;;
-	doc)
+        tar)
+            cp -p $tmpdir/$HDF5_VERS.tar $DEST/$HDF5_VERS.tar
+            (cd $DEST; md5sum $HDF5_VERS.tar >> $MD5file)
+            ;;
+        gzip)
+            test "$verbose" && echo "   Running gzip..." 1>&2
+            gzip -9 <$tmpdir/$HDF5_VERS.tar >$DEST/$HDF5_VERS.tar.gz
+            (cd $DEST; md5sum $HDF5_VERS.tar.gz >> $MD5file)
+            ;;
+        bzip2)
+            test "$verbose" && echo "   Running bzip2..." 1>&2
+            bzip2 -9 <$tmpdir/$HDF5_VERS.tar >$DEST/$HDF5_VERS.tar.bz2
+            (cd $DEST; md5sum $HDF5_VERS.tar.bz2 >> $MD5file)
+            ;;
+        zip)
+            test "$verbose" && echo "   Creating zip ball..." 1>&2
+            tar2zip $HDF5_IN_VERS $tmpdir/$HDF5_VERS.tar $DEST/$HDF5_VERS.zip 1>&2
+            (cd $DEST; md5sum $HDF5_VERS.zip >> $MD5file)
+            ;;
+        doc)
             if [ "${DOCVERSION}" = "" ]; then
                 DOCVERSION=master
             fi
-	    test "$verbose" && echo "   Creating docs..." 1>&2
-	    # Check out docs from git repo
-	    (cd $tmpdir; git clone $DOC_URL > /dev/null) || exit 1
-	    # Create doxygen C++ RM
-	    (cd c++/src && doxygen cpp_doc_config > /dev/null ) || exit 1
-	    # Replace version of C++ RM with just-created version
+            test "$verbose" && echo "   Creating docs..." 1>&2
+            # Check out docs from git repo
+            (cd $tmpdir; git clone $DOC_URL > /dev/null) || exit 1
+            # Create doxygen C++ RM
+            (cd c++/src && doxygen cpp_doc_config > /dev/null ) || exit 1
+            # Replace version of C++ RM with just-created version
             rm -rf $tmpdir/${DOCVERSION}/html/$CPPLUS_RM_NAME
             mv c++/src/$CPPLUS_RM_NAME $tmpdir/${DOCVERSION}/html/$CPPLUS_RM_NAME
             # Compress the docs and move them to the release area
             mv $tmpdir/$DOCVERSION $tmpdir/${HDF5_VERS}_docs
-	    (cd $tmpdir && tar cf ${HDF5_VERS}_docs.tar ${HDF5_VERS}_docs)
-	    mv $tmpdir/${HDF5_VERS}_docs.tar $DEST
-	    ;;
-	*)
-	    echo "***Error*** Unknown method $comp"
-	    exit 1
-	    ;;
+            (cd $tmpdir && tar cf ${HDF5_VERS}_docs.tar ${HDF5_VERS}_docs)
+            mv $tmpdir/${HDF5_VERS}_docs.tar $DEST
+            ;;
+        *)
+            echo "***Error*** Unknown method $comp"
+            exit 1
+            ;;
     esac
 done
 
@@ -408,4 +354,6 @@ fi
 # Remove temporary things
 rm -rf $tmpdir
 
+echo "DONE"
+
 exit 0

bin/buildhdf5

@@ -7,7 +7,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #
@@ -178,7 +178,7 @@ LOCATE_SZLIB()
 	    esac
 	    ;;	# end of case ncsa
 	unknown)
-	    # Unknow domain. Give a shot at the some standard places.
+	    # Unknown domain. Give a shot at the some standard places.
 	    szlibpaths="/usr/local"
 	    ;;
     esac	# end of case $mydomain

bin/checkapi

@@ -1,4 +1,4 @@
-#!/usr/bin/perl -w
+#!/usr/bin/env perl
 #
 # Copyright by The HDF Group.
 # Copyright by the Board of Trustees of the University of Illinois.
@@ -7,12 +7,14 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #
 require 5.003;
 
+use warnings;
+
 # Purpose: insures that API functions aren't called internally.
 # Usage:   checkapi H5*.c
 my $filename = "";

bin/checkposix

@@ -1,5 +1,6 @@
-#!/usr/bin/perl -w
+#!/usr/bin/env perl
 require 5.003;
+use warnings;
 
 #
 # Copyright by The HDF Group.
@@ -9,7 +10,7 @@ require 5.003;
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #
@@ -43,7 +44,27 @@ foreach $arg (@ARGV) {
     #
     # If a user specifies one file, process it no matter what so people
     # can inspect files we normally skip (like H5system.c).
+
+    $ignore = 0;
+
+    # Ignored files in src/
     if($#ARGV gt 0 and $filename =~ /H5FDmulti|H5FDstdio|H5VLpassthru|H5system|H5detect|H5make_libsettings/) {
+        $ignore = 1;
+    }
+    # Ignored atomic test files in test/
+    if($#ARGV gt 0 and $filename =~ /atomic_reader|atomic_writer/) {
+        $ignore = 1;
+    }
+    # Ignored filter plugins in test/
+    if($#ARGV gt 0 and $filename =~ /^filter_plugin\d_/) {
+        $ignore = 1;
+    }
+    # Ignored generators in test/
+    if($#ARGV gt 0 and $filename =~ /^gen_/) {
+        $ignore = 1;
+    }
+
+    if($ignore) {
         print "$filename is exempt from using Standard library macro wrappers\n";
         next;
     }
@@ -94,18 +115,21 @@ foreach $arg (@ARGV) {
 
             # These are really HDF5 functions/macros even though they don't
             # start with `h' or `H'.
-            next if $name =~ /^FUNC_(ENTER|LEAVE)(_(NO)?API|_PACKAGE|_STATIC)?(_NOFS|_NOCLEAR|_NOINIT)?(_NOFUNC|_TAG)?$/;
+            next if $name =~ /^FUNC_(ENTER|LEAVE)(_(NO)?API|_PACKAGE|_STATIC)?(_NAMECHECK_ONLY|_NOFS|_NOCLEAR|_NOINIT|_NOPUSH)?(_NOFUNC|_TAG)?$/;
             next if $name =~ /^(BEGIN|END)_FUNC$/;
             next if $name =~ /^U?INT(8|16|32|64)(ENCODE|DECODE)(_VAR)?$/;
             next if $name =~ /^CI_(PRINT_STATS|INC_SRC|INC_DST)$/;
             next if $name =~ /^(ABS|ADDR_OVERFLOW|ALL_MEMBERS|BOUND|CONSTR|DETECT_[I|F|M]|DOWN)$/;
             next if $name =~ /^(MIN3?|MAX3?|NELMTS|POWER_OF_TWO|REGION_OVERFLOW)$/;
-            next if $name =~ /^(UNIQUE_MEMBERS|S_ISDIR)$/;
+            next if $name =~ /^(SIZE_OVERFLOW|UNIQUE_MEMBERS|S_ISDIR)$/;
             next if $name =~ /^addr_defined$/;
+            next if $name =~ /^TERMINATOR$/;
 
-            # These functions/macros are exempt.
-            # op, cb, and OP are often spuriously flagged so ignore them.
-            next if $name =~ /^(main|op|cb|OP)$/;
+            # Ignore callback invocation
+            next if $name =~ /^(op|cb|OP|iter_op|func)$/;
+
+            # Ignore main
+            next if $name =~ /^main$/;
 
             # This often appears in preprocessor lines that span multiple lines
             next if $name =~ /^(defined)$/;
@@ -139,15 +163,38 @@ foreach $arg (@ARGV) {
                 next if $name =~ /^(pow_fun|round_fun|abs_fun|lround_fun|llround_fun)$/;
             }
 
+            # This is a macro parameter in H5Rint.c. Ignore it in this file.
+            if($filename =~ /H5Rint/) {
+                next if $name =~ /^(func)$/;
+            }
+
+            # Internal calls in the HDFS VFD (H5FDhdfs.c). Ignore it in this file.
+            if($filename =~ /H5FDhdfs/) {
+                next if $name =~ /^(hdfs)/;
+            }
+
+            # Macros, etc. from the mirror VFD (H5FDmirror.c). Ignore in this file.
+            if($filename =~ /H5FDmirror/) {
+                next if $name =~ /^(LOG)/;
+                next if $name =~ /^(BSWAP_64|is_host_little_endian)$/;
+            }
+
+            # These are things in H5FDs3comms.c and H5FDros3.c. Ignore them in these files.
+            if($filename =~ /H5FDs3comms|H5FDros3/) {
+                next if $name =~ /^(curl_|curlwritecallback|gmnow)/;
+                next if $name =~ /^(ros3_|ROS3_|S3COMMS_)/;
+                next if $name =~ /^(EVP_sha256|SHA256|ISO8601NOW)$/;
+            }
+
             # TESTING (not comprehensive - just noise reduction)
             
             # Test macros and functions (testhdf5.h)
             next if $name =~ /^(AddTest|TestErrPrintf|TestSummary|TestCleanup|TestShutdown)$/;
             next if $name =~ /^(CHECK|CHECK_PTR|CHECK_PTR_NULL|CHECK_PTR_EQ|CHECK_I)$/;
-            next if $name =~ /^(VERIFY|VERIFY_STR|VERIFY|TYPE|MESSAGE|ERROR)$/;
+            next if $name =~ /^(VERIFY|VERIFY_STR|VERIFY_TYPE|MESSAGE|ERROR)$/;
 
             # Test macros and functions (h5test.h)
-            next if $name =~ /^(TESTING|PASSED|SKIPPED|FAIL_PUTS_ERROR|FAIL_STACK_ERROR|TEST_ERROR)$/;
+            next if $name =~ /^(TESTING|PASSED|SKIPPED|PUTS_ERROR|FAIL_PUTS_ERROR|FAIL_STACK_ERROR|TEST_ERROR|AT)$/;
             next if $name =~ /^(GetTestExpress)$/;
 
             # Ignore functions that start with test_ or check_
@@ -157,9 +204,49 @@ foreach $arg (@ARGV) {
             # Ignore functions that start with h5_
             next if $name =~ /^h5_/;
 
+            # Ignore process completed status
+            next if $name =~ /(WIFEXITED|WEXITSTATUS|WIFSIGNALED|WTERMSIG|WCOREDUMP|WIFSTOPPED|WSTOPSIG)/;
+
             # Ignore usage functions
             next if $name =~ /^usage$/;
 
+            # Ignore callbacks
+            next if $name =~ /(_cb\d?)$/;
+
+            # Specific tests (not even remotely comprehensive)
+
+            # accum test code
+            if($filename =~ /accum/) {
+                next if $name =~ /^(accum_)/;
+            }
+
+            # cache test code
+            if($filename =~ /cache/) {
+                next if $name =~ /(_entry|_entries|_cache|_check|_dependency|_status|_op)$/;
+                next if $name =~ /^(verify_|smoke_check_|row_major_|col_major_)/;
+                next if $name =~ /^(resize_configs_are_equal|CACHE_ERROR)$/
+            }
+
+            # Splitter VFD test code. Ignore in vfd.c.
+            if($filename =~ /vfd/) {
+                next if $name =~ /^(SPLITTER_|splitter_)/;
+                next if $name =~ /(_splitter_)/;
+                next if $name =~ /^(file_exists)$/;
+            }
+
+            # S3 VFD test code. Ignore in ros3.c and s3comms.c.
+            # HDFS VFD test code. Ignore in hdfs.c.
+            if($filename =~ /ros3|s3comms|hdfs/) {
+                next if $name =~ /^(JSVERIFY|JSFAILED_|JSERR_|jserr_|FAIL_)/;
+                next if $name =~ /^(curl_)/;
+                next if $name =~ /^(S3COMMS_FORMAT_CREDENTIAL|ISO8601NOW|gmnow)$/;
+            }
+
+            # VDS test code. Ignore in vds.c.
+            if($filename =~ /vds/) {
+                next if $name =~ /^(vds_)/;
+            }
+
             print "$filename:$.: $name\n";
         }
 

bin/chkconfigure

@@ -6,7 +6,7 @@
 ## This file is part of HDF5.  The full HDF5 copyright notice, including
 ## terms governing use, modification, and redistribution, is contained in
 ## the COPYING file, which can be found at the root of the source code
-## distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+## distribution tree, or in https://www.hdfgroup.org/licenses.
 ## If you do not have access to either file, you may request a copy from
 ## help@hdfgroup.org.  
 ##

bin/chkcopyright

@@ -7,7 +7,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #

bin/chkmanifest

@@ -1,154 +0,0 @@
-#!/bin/sh
-#
-# Copyright by The HDF Group.
-# Copyright by the Board of Trustees of the University of Illinois.
-# All rights reserved.
-#
-# This file is part of HDF5.  The full HDF5 copyright notice, including
-# terms governing use, modification, and redistribution, is contained in
-# the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
-# If you do not have access to either file, you may request a copy from
-# help@hdfgroup.org.
-#
-
-# Check that all the files in MANIFEST exist and (if this is a
-# GIT checkout) that all the GIT-managed files appear in the
-# MANIFEST.
-# 
-
-verbose=yes
-MANIFEST=/tmp/HD_MANIFEST.$$
-AUTOGEN=./autogen.sh
-AUTOGEN_LOG=/tmp/autogen.log.$$
-
-# Main
-test "$verbose" && echo "   Checking MANIFEST..." 1>&2
-# clean up $MANIFEST file when exits
-trap "rm -f $MANIFEST" 0
-
-# Only split lines on newline, not whitespace
-set -f
-IFS='
-'
-
-# First make sure i am in the directory in which there is an MANIFEST file
-# and then do the checking from there.  Will try the following,
-# current directory, parent directory, the directory this command resides.
-if [ -f MANIFEST ]; then
-    continue
-elif [ -f ../MANIFEST ]; then
-    cd ..
-else
-    commanddir=`dirname $0`
-    if [ -d "$commanddir" -a -f $commanddir/MANIFEST ]; then
-	cd $commanddir
-	continue
-    else
-	echo MANIFEST file not found. Abort.
-	exit 1
-    fi
-fi
-
-# Do an autogen if generated files (e.g., configure) is not present
-if [ ! -f configure ]; then
-    echo "   running $AUTOGEN"
-    $AUTOGEN > $AUTOGEN_LOG 2>&1
-    if [ $? -ne 0 ]; then
-	echo $AUTOGEN encountered error. Abort.
-	echo output from $AUTOGEN:
-	cat $AUTOGEN_LOG
-	exit 1
-    fi
-    rm $AUTOGEN_LOG
-fi
-
-# Check for duplicate entries.  This can be done at any time, but it may as 
-# well be sooner so that if something else fails the presence of duplicates
-# will already be known.
-errcode=0
-DUPLICATES=`perl -ne 's/#.*//; next if /^\s*$/; if ($uniq{$_}++) { print $_; }' MANIFEST`
-if [ "$DUPLICATES" ]; then
-   cat 1>&2 <<EOF
-These entries appear more than once in the MANIFEST:  
-$DUPLICATES
-Please remove the duplicate lines and try again.
-
-EOF
-errcode=1 
-fi
-
-# Copy the manifest file to get a list of file names.
-grep '^\.' MANIFEST | expand | cut -f1 -d' ' >$MANIFEST
-
-for file in `cat $MANIFEST`; do
-    if [ ! -f $file ]; then
-       echo "- $file"
-       fail=yes
-    fi
-done
-
-# Get the list of files under version control and check that they are
-# present.
-#
-# First get a list of all the pending files with git status and
-# check those.
-git_stat=`git status -s`
-for file in $git_stat; do
-
-    # Newly added files are not listed by git ls-files, which
-    # we check later.
-
-    # The line listing new files starts with 'A'.
-    letter=`echo $file | head -c 1`
-    if [ "$letter" = "A" ]; then
-        # Convert the git status columns to './' so it matches
-        # the manifest file name.
-        #
-        # There is a space between the status columns and file name, hence
-        # the '3'.
-        path=`echo $file | sed 's/^.\{3\}/\.\//g'`
-        # Ignore directories
-        if [ ! -d $path ]; then
-            if (grep ^$path$ $MANIFEST >/dev/null); then
-                :
-            else
-                echo "- $path"
-                fail=yes
-            fi
-        fi
-    fi
-done
-
-# Next check git ls-files, which gets a list of all files that are
-# checked in.
-git_ls=`git ls-files`
-for file in $git_ls; do
-    path="./${file}"
-    # Ignore directories
-    if [ ! -d $path ]; then
-        if (grep ^$path$ $MANIFEST >/dev/null); then
-            :
-        else
-            echo "+ $path"
-            fail=yes
-        fi
-    fi
-done
-
-# Finish up
-if [ "X$fail" = "Xyes" ]; then
-    cat 1>&2 <<EOF
-The MANIFEST is out of date. Files marked with a minus sign (-) no
-longer exist; files marked with a plus sign (+) are GIT-managed but do
-not appear in the MANIFEST.  Please remedy the situation and try again.
-EOF
-    exit 1
-fi
-
-if [ $errcode -ne 0 ]; then
-    exit 1
-fi 
-
-test "$verbose" && echo "   The MANIFEST is up to date." 1>&2
-exit 0

bin/cmakehdf5

@@ -199,7 +199,7 @@ DUMP_LOGFILE()
 # Show a start time stamp
 TIMESTAMP
 
-# Initialize njobs if $AMKE is defined
+# Initialize njobs if $MAKE is defined
 if [ -n "$MAKE" ]; then
     # assume all arguments are for --jobs
     njobs=`echo $MAKE | cut -s -d' ' -f2-`
@@ -365,7 +365,7 @@ STEP "Test the library and tools..." "ctest . -C Release $njobs" $testlog
 #      7. Create an install image with this command:
 STEP "Create an install image..." "cpack -C Release CPackConfig.cmake" $packlog
 
-# The implementation of installation is imcomplete (only works for linux).
+# The implementation of installation is incomplete (only works for linux).
 # Screen it out for now till it is completed.
 if false; then
 #      8. Install with this command:

bin/compile

@@ -0,0 +1,347 @@
+#! /bin/sh
+# Wrapper for compilers which do not understand '-c -o'.
+
+scriptversion=2012-10-14.11; # UTC
+
+# Copyright (C) 1999-2014 Free Software Foundation, Inc.
+# Written by Tom Tromey <tromey@cygnus.com>.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation; either version 2, or (at your option)
+# any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <http://www.gnu.org/licenses/>.
+
+# As a special exception to the GNU General Public License, if you
+# distribute this file as part of a program that contains a
+# configuration script generated by Autoconf, you may include it under
+# the same distribution terms that you use for the rest of that program.
+
+# This file is maintained in Automake, please report
+# bugs to <bug-automake@gnu.org> or send patches to
+# <automake-patches@gnu.org>.
+
+nl='
+'
+
+# We need space, tab and new line, in precisely that order.  Quoting is
+# there to prevent tools from complaining about whitespace usage.
+IFS=" ""	$nl"
+
+file_conv=
+
+# func_file_conv build_file lazy
+# Convert a $build file to $host form and store it in $file
+# Currently only supports Windows hosts. If the determined conversion
+# type is listed in (the comma separated) LAZY, no conversion will
+# take place.
+func_file_conv ()
+{
+  file=$1
+  case $file in
+    / | /[!/]*) # absolute file, and not a UNC file
+      if test -z "$file_conv"; then
+	# lazily determine how to convert abs files
+	case `uname -s` in
+	  MINGW*)
+	    file_conv=mingw
+	    ;;
+	  CYGWIN*)
+	    file_conv=cygwin
+	    ;;
+	  *)
+	    file_conv=wine
+	    ;;
+	esac
+      fi
+      case $file_conv/,$2, in
+	*,$file_conv,*)
+	  ;;
+	mingw/*)
+	  file=`cmd //C echo "$file " | sed -e 's/"\(.*\) " *$/\1/'`
+	  ;;
+	cygwin/*)
+	  file=`cygpath -m "$file" || echo "$file"`
+	  ;;
+	wine/*)
+	  file=`winepath -w "$file" || echo "$file"`
+	  ;;
+      esac
+      ;;
+  esac
+}
+
+# func_cl_dashL linkdir
+# Make cl look for libraries in LINKDIR
+func_cl_dashL ()
+{
+  func_file_conv "$1"
+  if test -z "$lib_path"; then
+    lib_path=$file
+  else
+    lib_path="$lib_path;$file"
+  fi
+  linker_opts="$linker_opts -LIBPATH:$file"
+}
+
+# func_cl_dashl library
+# Do a library search-path lookup for cl
+func_cl_dashl ()
+{
+  lib=$1
+  found=no
+  save_IFS=$IFS
+  IFS=';'
+  for dir in $lib_path $LIB
+  do
+    IFS=$save_IFS
+    if $shared && test -f "$dir/$lib.dll.lib"; then
+      found=yes
+      lib=$dir/$lib.dll.lib
+      break
+    fi
+    if test -f "$dir/$lib.lib"; then
+      found=yes
+      lib=$dir/$lib.lib
+      break
+    fi
+    if test -f "$dir/lib$lib.a"; then
+      found=yes
+      lib=$dir/lib$lib.a
+      break
+    fi
+  done
+  IFS=$save_IFS
+
+  if test "$found" != yes; then
+    lib=$lib.lib
+  fi
+}
+
+# func_cl_wrapper cl arg...
+# Adjust compile command to suit cl
+func_cl_wrapper ()
+{
+  # Assume a capable shell
+  lib_path=
+  shared=:
+  linker_opts=
+  for arg
+  do
+    if test -n "$eat"; then
+      eat=
+    else
+      case $1 in
+	-o)
+	  # configure might choose to run compile as 'compile cc -o foo foo.c'.
+	  eat=1
+	  case $2 in
+	    *.o | *.[oO][bB][jJ])
+	      func_file_conv "$2"
+	      set x "$@" -Fo"$file"
+	      shift
+	      ;;
+	    *)
+	      func_file_conv "$2"
+	      set x "$@" -Fe"$file"
+	      shift
+	      ;;
+	  esac
+	  ;;
+	-I)
+	  eat=1
+	  func_file_conv "$2" mingw
+	  set x "$@" -I"$file"
+	  shift
+	  ;;
+	-I*)
+	  func_file_conv "${1#-I}" mingw
+	  set x "$@" -I"$file"
+	  shift
+	  ;;
+	-l)
+	  eat=1
+	  func_cl_dashl "$2"
+	  set x "$@" "$lib"
+	  shift
+	  ;;
+	-l*)
+	  func_cl_dashl "${1#-l}"
+	  set x "$@" "$lib"
+	  shift
+	  ;;
+	-L)
+	  eat=1
+	  func_cl_dashL "$2"
+	  ;;
+	-L*)
+	  func_cl_dashL "${1#-L}"
+	  ;;
+	-static)
+	  shared=false
+	  ;;
+	-Wl,*)
+	  arg=${1#-Wl,}
+	  save_ifs="$IFS"; IFS=','
+	  for flag in $arg; do
+	    IFS="$save_ifs"
+	    linker_opts="$linker_opts $flag"
+	  done
+	  IFS="$save_ifs"
+	  ;;
+	-Xlinker)
+	  eat=1
+	  linker_opts="$linker_opts $2"
+	  ;;
+	-*)
+	  set x "$@" "$1"
+	  shift
+	  ;;
+	*.cc | *.CC | *.cxx | *.CXX | *.[cC]++)
+	  func_file_conv "$1"
+	  set x "$@" -Tp"$file"
+	  shift
+	  ;;
+	*.c | *.cpp | *.CPP | *.lib | *.LIB | *.Lib | *.OBJ | *.obj | *.[oO])
+	  func_file_conv "$1" mingw
+	  set x "$@" "$file"
+	  shift
+	  ;;
+	*)
+	  set x "$@" "$1"
+	  shift
+	  ;;
+      esac
+    fi
+    shift
+  done
+  if test -n "$linker_opts"; then
+    linker_opts="-link$linker_opts"
+  fi
+  exec "$@" $linker_opts
+  exit 1
+}
+
+eat=
+
+case $1 in
+  '')
+     echo "$0: No command.  Try '$0 --help' for more information." 1>&2
+     exit 1;
+     ;;
+  -h | --h*)
+    cat <<\EOF
+Usage: compile [--help] [--version] PROGRAM [ARGS]
+
+Wrapper for compilers which do not understand '-c -o'.
+Remove '-o dest.o' from ARGS, run PROGRAM with the remaining
+arguments, and rename the output as expected.
+
+If you are trying to build a whole package this is not the
+right script to run: please start by reading the file 'INSTALL'.
+
+Report bugs to <bug-automake@gnu.org>.
+EOF
+    exit $?
+    ;;
+  -v | --v*)
+    echo "compile $scriptversion"
+    exit $?
+    ;;
+  cl | *[/\\]cl | cl.exe | *[/\\]cl.exe )
+    func_cl_wrapper "$@"      # Doesn't return...
+    ;;
+esac
+
+ofile=
+cfile=
+
+for arg
+do
+  if test -n "$eat"; then
+    eat=
+  else
+    case $1 in
+      -o)
+	# configure might choose to run compile as 'compile cc -o foo foo.c'.
+	# So we strip '-o arg' only if arg is an object.
+	eat=1
+	case $2 in
+	  *.o | *.obj)
+	    ofile=$2
+	    ;;
+	  *)
+	    set x "$@" -o "$2"
+	    shift
+	    ;;
+	esac
+	;;
+      *.c)
+	cfile=$1
+	set x "$@" "$1"
+	shift
+	;;
+      *)
+	set x "$@" "$1"
+	shift
+	;;
+    esac
+  fi
+  shift
+done
+
+if test -z "$ofile" || test -z "$cfile"; then
+  # If no '-o' option was seen then we might have been invoked from a
+  # pattern rule where we don't need one.  That is ok -- this is a
+  # normal compilation that the losing compiler can handle.  If no
+  # '.c' file was seen then we are probably linking.  That is also
+  # ok.
+  exec "$@"
+fi
+
+# Name of file we expect compiler to create.
+cofile=`echo "$cfile" | sed 's|^.*[\\/]||; s|^[a-zA-Z]:||; s/\.c$/.o/'`
+
+# Create the lock directory.
+# Note: use '[/\\:.-]' here to ensure that we don't use the same name
+# that we are using for the .o file.  Also, base the name on the expected
+# object file name, since that is what matters with a parallel build.
+lockdir=`echo "$cofile" | sed -e 's|[/\\:.-]|_|g'`.d
+while true; do
+  if mkdir "$lockdir" >/dev/null 2>&1; then
+    break
+  fi
+  sleep 1
+done
+# FIXME: race condition here if user kills between mkdir and trap.
+trap "rmdir '$lockdir'; exit 1" 1 2 15
+
+# Run the compile.
+"$@"
+ret=$?
+
+if test -f "$cofile"; then
+  test "$cofile" = "$ofile" || mv "$cofile" "$ofile"
+elif test -f "${cofile}bj"; then
+  test "${cofile}bj" = "$ofile" || mv "${cofile}bj" "$ofile"
+fi
+
+rmdir "$lockdir"
+exit $ret
+
+# Local Variables:
+# mode: shell-script
+# sh-indentation: 2
+# eval: (add-hook 'write-file-hooks 'time-stamp)
+# time-stamp-start: "scriptversion="
+# time-stamp-format: "%:y-%02m-%02d.%02H"
+# time-stamp-time-zone: "UTC"
+# time-stamp-end: "; # UTC"
+# End:

bin/debug-ohdr

@@ -1,4 +1,4 @@
-#!/usr/bin/perl
+#!/usr/bin/env perl
 #
 # Copyright by The HDF Group.
 # Copyright by the Board of Trustees of the University of Illinois.
@@ -7,7 +7,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #

bin/depcomp

@@ -0,0 +1,791 @@
+#! /bin/sh
+# depcomp - compile a program generating dependencies as side-effects
+
+scriptversion=2013-05-30.07; # UTC
+
+# Copyright (C) 1999-2014 Free Software Foundation, Inc.
+
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation; either version 2, or (at your option)
+# any later version.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <http://www.gnu.org/licenses/>.
+
+# As a special exception to the GNU General Public License, if you
+# distribute this file as part of a program that contains a
+# configuration script generated by Autoconf, you may include it under
+# the same distribution terms that you use for the rest of that program.
+
+# Originally written by Alexandre Oliva <oliva@dcc.unicamp.br>.
+
+case $1 in
+  '')
+    echo "$0: No command.  Try '$0 --help' for more information." 1>&2
+    exit 1;
+    ;;
+  -h | --h*)
+    cat <<\EOF
+Usage: depcomp [--help] [--version] PROGRAM [ARGS]
+
+Run PROGRAMS ARGS to compile a file, generating dependencies
+as side-effects.
+
+Environment variables:
+  depmode     Dependency tracking mode.
+  source      Source file read by 'PROGRAMS ARGS'.
+  object      Object file output by 'PROGRAMS ARGS'.
+  DEPDIR      directory where to store dependencies.
+  depfile     Dependency file to output.
+  tmpdepfile  Temporary file to use when outputting dependencies.
+  libtool     Whether libtool is used (yes/no).
+
+Report bugs to <bug-automake@gnu.org>.
+EOF
+    exit $?
+    ;;
+  -v | --v*)
+    echo "depcomp $scriptversion"
+    exit $?
+    ;;
+esac
+
+# Get the directory component of the given path, and save it in the
+# global variables '$dir'.  Note that this directory component will
+# be either empty or ending with a '/' character.  This is deliberate.
+set_dir_from ()
+{
+  case $1 in
+    */*) dir=`echo "$1" | sed -e 's|/[^/]*$|/|'`;;
+      *) dir=;;
+  esac
+}
+
+# Get the suffix-stripped basename of the given path, and save it the
+# global variable '$base'.
+set_base_from ()
+{
+  base=`echo "$1" | sed -e 's|^.*/||' -e 's/\.[^.]*$//'`
+}
+
+# If no dependency file was actually created by the compiler invocation,
+# we still have to create a dummy depfile, to avoid errors with the
+# Makefile "include basename.Plo" scheme.
+make_dummy_depfile ()
+{
+  echo "#dummy" > "$depfile"
+}
+
+# Factor out some common post-processing of the generated depfile.
+# Requires the auxiliary global variable '$tmpdepfile' to be set.
+aix_post_process_depfile ()
+{
+  # If the compiler actually managed to produce a dependency file,
+  # post-process it.
+  if test -f "$tmpdepfile"; then
+    # Each line is of the form 'foo.o: dependency.h'.
+    # Do two passes, one to just change these to
+    #   $object: dependency.h
+    # and one to simply output
+    #   dependency.h:
+    # which is needed to avoid the deleted-header problem.
+    { sed -e "s,^.*\.[$lower]*:,$object:," < "$tmpdepfile"
+      sed -e "s,^.*\.[$lower]*:[$tab ]*,," -e 's,$,:,' < "$tmpdepfile"
+    } > "$depfile"
+    rm -f "$tmpdepfile"
+  else
+    make_dummy_depfile
+  fi
+}
+
+# A tabulation character.
+tab='	'
+# A newline character.
+nl='
+'
+# Character ranges might be problematic outside the C locale.
+# These definitions help.
+upper=ABCDEFGHIJKLMNOPQRSTUVWXYZ
+lower=abcdefghijklmnopqrstuvwxyz
+digits=0123456789
+alpha=${upper}${lower}
+
+if test -z "$depmode" || test -z "$source" || test -z "$object"; then
+  echo "depcomp: Variables source, object and depmode must be set" 1>&2
+  exit 1
+fi
+
+# Dependencies for sub/bar.o or sub/bar.obj go into sub/.deps/bar.Po.
+depfile=${depfile-`echo "$object" |
+  sed 's|[^\\/]*$|'${DEPDIR-.deps}'/&|;s|\.\([^.]*\)$|.P\1|;s|Pobj$|Po|'`}
+tmpdepfile=${tmpdepfile-`echo "$depfile" | sed 's/\.\([^.]*\)$/.T\1/'`}
+
+rm -f "$tmpdepfile"
+
+# Avoid interferences from the environment.
+gccflag= dashmflag=
+
+# Some modes work just like other modes, but use different flags.  We
+# parameterize here, but still list the modes in the big case below,
+# to make depend.m4 easier to write.  Note that we *cannot* use a case
+# here, because this file can only contain one case statement.
+if test "$depmode" = hp; then
+  # HP compiler uses -M and no extra arg.
+  gccflag=-M
+  depmode=gcc
+fi
+
+if test "$depmode" = dashXmstdout; then
+  # This is just like dashmstdout with a different argument.
+  dashmflag=-xM
+  depmode=dashmstdout
+fi
+
+cygpath_u="cygpath -u -f -"
+if test "$depmode" = msvcmsys; then
+  # This is just like msvisualcpp but w/o cygpath translation.
+  # Just convert the backslash-escaped backslashes to single forward
+  # slashes to satisfy depend.m4
+  cygpath_u='sed s,\\\\,/,g'
+  depmode=msvisualcpp
+fi
+
+if test "$depmode" = msvc7msys; then
+  # This is just like msvc7 but w/o cygpath translation.
+  # Just convert the backslash-escaped backslashes to single forward
+  # slashes to satisfy depend.m4
+  cygpath_u='sed s,\\\\,/,g'
+  depmode=msvc7
+fi
+
+if test "$depmode" = xlc; then
+  # IBM C/C++ Compilers xlc/xlC can output gcc-like dependency information.
+  gccflag=-qmakedep=gcc,-MF
+  depmode=gcc
+fi
+
+case "$depmode" in
+gcc3)
+## gcc 3 implements dependency tracking that does exactly what
+## we want.  Yay!  Note: for some reason libtool 1.4 doesn't like
+## it if -MD -MP comes after the -MF stuff.  Hmm.
+## Unfortunately, FreeBSD c89 acceptance of flags depends upon
+## the command line argument order; so add the flags where they
+## appear in depend2.am.  Note that the slowdown incurred here
+## affects only configure: in makefiles, %FASTDEP% shortcuts this.
+  for arg
+  do
+    case $arg in
+    -c) set fnord "$@" -MT "$object" -MD -MP -MF "$tmpdepfile" "$arg" ;;
+    *)  set fnord "$@" "$arg" ;;
+    esac
+    shift # fnord
+    shift # $arg
+  done
+  "$@"
+  stat=$?
+  if test $stat -ne 0; then
+    rm -f "$tmpdepfile"
+    exit $stat
+  fi
+  mv "$tmpdepfile" "$depfile"
+  ;;
+
+gcc)
+## Note that this doesn't just cater to obsosete pre-3.x GCC compilers.
+## but also to in-use compilers like IMB xlc/xlC and the HP C compiler.
+## (see the conditional assignment to $gccflag above).
+## There are various ways to get dependency output from gcc.  Here's
+## why we pick this rather obscure method:
+## - Don't want to use -MD because we'd like the dependencies to end
+##   up in a subdir.  Having to rename by hand is ugly.
+##   (We might end up doing this anyway to support other compilers.)
+## - The DEPENDENCIES_OUTPUT environment variable makes gcc act like
+##   -MM, not -M (despite what the docs say).  Also, it might not be
+##   supported by the other compilers which use the 'gcc' depmode.
+## - Using -M directly means running the compiler twice (even worse
+##   than renaming).
+  if test -z "$gccflag"; then
+    gccflag=-MD,
+  fi
+  "$@" -Wp,"$gccflag$tmpdepfile"
+  stat=$?
+  if test $stat -ne 0; then
+    rm -f "$tmpdepfile"
+    exit $stat
+  fi
+  rm -f "$depfile"
+  echo "$object : \\" > "$depfile"
+  # The second -e expression handles DOS-style file names with drive
+  # letters.
+  sed -e 's/^[^:]*: / /' \
+      -e 's/^['$alpha']:\/[^:]*: / /' < "$tmpdepfile" >> "$depfile"
+## This next piece of magic avoids the "deleted header file" problem.
+## The problem is that when a header file which appears in a .P file
+## is deleted, the dependency causes make to die (because there is
+## typically no way to rebuild the header).  We avoid this by adding
+## dummy dependencies for each header file.  Too bad gcc doesn't do
+## this for us directly.
+## Some versions of gcc put a space before the ':'.  On the theory
+## that the space means something, we add a space to the output as
+## well.  hp depmode also adds that space, but also prefixes the VPATH
+## to the object.  Take care to not repeat it in the output.
+## Some versions of the HPUX 10.20 sed can't process this invocation
+## correctly.  Breaking it into two sed invocations is a workaround.
+  tr ' ' "$nl" < "$tmpdepfile" \
+    | sed -e 's/^\\$//' -e '/^$/d' -e "s|.*$object$||" -e '/:$/d' \
+    | sed -e 's/$/ :/' >> "$depfile"
+  rm -f "$tmpdepfile"
+  ;;
+
+hp)
+  # This case exists only to let depend.m4 do its work.  It works by
+  # looking at the text of this script.  This case will never be run,
+  # since it is checked for above.
+  exit 1
+  ;;
+
+sgi)
+  if test "$libtool" = yes; then
+    "$@" "-Wp,-MDupdate,$tmpdepfile"
+  else
+    "$@" -MDupdate "$tmpdepfile"
+  fi
+  stat=$?
+  if test $stat -ne 0; then
+    rm -f "$tmpdepfile"
+    exit $stat
+  fi
+  rm -f "$depfile"
+
+  if test -f "$tmpdepfile"; then  # yes, the sourcefile depend on other files
+    echo "$object : \\" > "$depfile"
+    # Clip off the initial element (the dependent).  Don't try to be
+    # clever and replace this with sed code, as IRIX sed won't handle
+    # lines with more than a fixed number of characters (4096 in
+    # IRIX 6.2 sed, 8192 in IRIX 6.5).  We also remove comment lines;
+    # the IRIX cc adds comments like '#:fec' to the end of the
+    # dependency line.
+    tr ' ' "$nl" < "$tmpdepfile" \
+      | sed -e 's/^.*\.o://' -e 's/#.*$//' -e '/^$/ d' \
+      | tr "$nl" ' ' >> "$depfile"
+    echo >> "$depfile"
+    # The second pass generates a dummy entry for each header file.
+    tr ' ' "$nl" < "$tmpdepfile" \
+      | sed -e 's/^.*\.o://' -e 's/#.*$//' -e '/^$/ d' -e 's/$/:/' \
+      >> "$depfile"
+  else
+    make_dummy_depfile
+  fi
+  rm -f "$tmpdepfile"
+  ;;
+
+xlc)
+  # This case exists only to let depend.m4 do its work.  It works by
+  # looking at the text of this script.  This case will never be run,
+  # since it is checked for above.
+  exit 1
+  ;;
+
+aix)
+  # The C for AIX Compiler uses -M and outputs the dependencies
+  # in a .u file.  In older versions, this file always lives in the
+  # current directory.  Also, the AIX compiler puts '$object:' at the
+  # start of each line; $object doesn't have directory information.
+  # Version 6 uses the directory in both cases.
+  set_dir_from "$object"
+  set_base_from "$object"
+  if test "$libtool" = yes; then
+    tmpdepfile1=$dir$base.u
+    tmpdepfile2=$base.u
+    tmpdepfile3=$dir.libs/$base.u
+    "$@" -Wc,-M
+  else
+    tmpdepfile1=$dir$base.u
+    tmpdepfile2=$dir$base.u
+    tmpdepfile3=$dir$base.u
+    "$@" -M
+  fi
+  stat=$?
+  if test $stat -ne 0; then
+    rm -f "$tmpdepfile1" "$tmpdepfile2" "$tmpdepfile3"
+    exit $stat
+  fi
+
+  for tmpdepfile in "$tmpdepfile1" "$tmpdepfile2" "$tmpdepfile3"
+  do
+    test -f "$tmpdepfile" && break
+  done
+  aix_post_process_depfile
+  ;;
+
+tcc)
+  # tcc (Tiny C Compiler) understand '-MD -MF file' since version 0.9.26
+  # FIXME: That version still under development at the moment of writing.
+  #        Make that this statement remains true also for stable, released
+  #        versions.
+  # It will wrap lines (doesn't matter whether long or short) with a
+  # trailing '\', as in:
+  #
+  #   foo.o : \
+  #    foo.c \
+  #    foo.h \
+  #
+  # It will put a trailing '\' even on the last line, and will use leading
+  # spaces rather than leading tabs (at least since its commit 0394caf7
+  # "Emit spaces for -MD").
+  "$@" -MD -MF "$tmpdepfile"
+  stat=$?
+  if test $stat -ne 0; then
+    rm -f "$tmpdepfile"
+    exit $stat
+  fi
+  rm -f "$depfile"
+  # Each non-empty line is of the form 'foo.o : \' or ' dep.h \'.
+  # We have to change lines of the first kind to '$object: \'.
+  sed -e "s|.*:|$object :|" < "$tmpdepfile" > "$depfile"
+  # And for each line of the second kind, we have to emit a 'dep.h:'
+  # dummy dependency, to avoid the deleted-header problem.
+  sed -n -e 's|^  *\(.*\) *\\$|\1:|p' < "$tmpdepfile" >> "$depfile"
+  rm -f "$tmpdepfile"
+  ;;
+
+## The order of this option in the case statement is important, since the
+## shell code in configure will try each of these formats in the order
+## listed in this file.  A plain '-MD' option would be understood by many
+## compilers, so we must ensure this comes after the gcc and icc options.
+pgcc)
+  # Portland's C compiler understands '-MD'.
+  # Will always output deps to 'file.d' where file is the root name of the
+  # source file under compilation, even if file resides in a subdirectory.
+  # The object file name does not affect the name of the '.d' file.
+  # pgcc 10.2 will output
+  #    foo.o: sub/foo.c sub/foo.h
+  # and will wrap long lines using '\' :
+  #    foo.o: sub/foo.c ... \
+  #     sub/foo.h ... \
+  #     ...
+  set_dir_from "$object"
+  # Use the source, not the object, to determine the base name, since
+  # that's sadly what pgcc will do too.
+  set_base_from "$source"
+  tmpdepfile=$base.d
+
+  # For projects that build the same source file twice into different object
+  # files, the pgcc approach of using the *source* file root name can cause
+  # problems in parallel builds.  Use a locking strategy to avoid stomping on
+  # the same $tmpdepfile.
+  lockdir=$base.d-lock
+  trap "
+    echo '$0: caught signal, cleaning up...' >&2
+    rmdir '$lockdir'
+    exit 1
+  " 1 2 13 15
+  numtries=100
+  i=$numtries
+  while test $i -gt 0; do
+    # mkdir is a portable test-and-set.
+    if mkdir "$lockdir" 2>/dev/null; then
+      # This process acquired the lock.
+      "$@" -MD
+      stat=$?
+      # Release the lock.
+      rmdir "$lockdir"
+      break
+    else
+      # If the lock is being held by a different process, wait
+      # until the winning process is done or we timeout.
+      while test -d "$lockdir" && test $i -gt 0; do
+        sleep 1
+        i=`expr $i - 1`
+      done
+    fi
+    i=`expr $i - 1`
+  done
+  trap - 1 2 13 15
+  if test $i -le 0; then
+    echo "$0: failed to acquire lock after $numtries attempts" >&2
+    echo "$0: check lockdir '$lockdir'" >&2
+    exit 1
+  fi
+
+  if test $stat -ne 0; then
+    rm -f "$tmpdepfile"
+    exit $stat
+  fi
+  rm -f "$depfile"
+  # Each line is of the form `foo.o: dependent.h',
+  # or `foo.o: dep1.h dep2.h \', or ` dep3.h dep4.h \'.
+  # Do two passes, one to just change these to
+  # `$object: dependent.h' and one to simply `dependent.h:'.
+  sed "s,^[^:]*:,$object :," < "$tmpdepfile" > "$depfile"
+  # Some versions of the HPUX 10.20 sed can't process this invocation
+  # correctly.  Breaking it into two sed invocations is a workaround.
+  sed 's,^[^:]*: \(.*\)$,\1,;s/^\\$//;/^$/d;/:$/d' < "$tmpdepfile" \
+    | sed -e 's/$/ :/' >> "$depfile"
+  rm -f "$tmpdepfile"
+  ;;
+
+hp2)
+  # The "hp" stanza above does not work with aCC (C++) and HP's ia64
+  # compilers, which have integrated preprocessors.  The correct option
+  # to use with these is +Maked; it writes dependencies to a file named
+  # 'foo.d', which lands next to the object file, wherever that
+  # happens to be.
+  # Much of this is similar to the tru64 case; see comments there.
+  set_dir_from  "$object"
+  set_base_from "$object"
+  if test "$libtool" = yes; then
+    tmpdepfile1=$dir$base.d
+    tmpdepfile2=$dir.libs/$base.d
+    "$@" -Wc,+Maked
+  else
+    tmpdepfile1=$dir$base.d
+    tmpdepfile2=$dir$base.d
+    "$@" +Maked
+  fi
+  stat=$?
+  if test $stat -ne 0; then
+     rm -f "$tmpdepfile1" "$tmpdepfile2"
+     exit $stat
+  fi
+
+  for tmpdepfile in "$tmpdepfile1" "$tmpdepfile2"
+  do
+    test -f "$tmpdepfile" && break
+  done
+  if test -f "$tmpdepfile"; then
+    sed -e "s,^.*\.[$lower]*:,$object:," "$tmpdepfile" > "$depfile"
+    # Add 'dependent.h:' lines.
+    sed -ne '2,${
+               s/^ *//
+               s/ \\*$//
+               s/$/:/
+               p
+             }' "$tmpdepfile" >> "$depfile"
+  else
+    make_dummy_depfile
+  fi
+  rm -f "$tmpdepfile" "$tmpdepfile2"
+  ;;
+
+tru64)
+  # The Tru64 compiler uses -MD to generate dependencies as a side
+  # effect.  'cc -MD -o foo.o ...' puts the dependencies into 'foo.o.d'.
+  # At least on Alpha/Redhat 6.1, Compaq CCC V6.2-504 seems to put
+  # dependencies in 'foo.d' instead, so we check for that too.
+  # Subdirectories are respected.
+  set_dir_from  "$object"
+  set_base_from "$object"
+
+  if test "$libtool" = yes; then
+    # Libtool generates 2 separate objects for the 2 libraries.  These
+    # two compilations output dependencies in $dir.libs/$base.o.d and
+    # in $dir$base.o.d.  We have to check for both files, because
+    # one of the two compilations can be disabled.  We should prefer
+    # $dir$base.o.d over $dir.libs/$base.o.d because the latter is
+    # automatically cleaned when .libs/ is deleted, while ignoring
+    # the former would cause a distcleancheck panic.
+    tmpdepfile1=$dir$base.o.d          # libtool 1.5
+    tmpdepfile2=$dir.libs/$base.o.d    # Likewise.
+    tmpdepfile3=$dir.libs/$base.d      # Compaq CCC V6.2-504
+    "$@" -Wc,-MD
+  else
+    tmpdepfile1=$dir$base.d
+    tmpdepfile2=$dir$base.d
+    tmpdepfile3=$dir$base.d
+    "$@" -MD
+  fi
+
+  stat=$?
+  if test $stat -ne 0; then
+    rm -f "$tmpdepfile1" "$tmpdepfile2" "$tmpdepfile3"
+    exit $stat
+  fi
+
+  for tmpdepfile in "$tmpdepfile1" "$tmpdepfile2" "$tmpdepfile3"
+  do
+    test -f "$tmpdepfile" && break
+  done
+  # Same post-processing that is required for AIX mode.
+  aix_post_process_depfile
+  ;;
+
+msvc7)
+  if test "$libtool" = yes; then
+    showIncludes=-Wc,-showIncludes
+  else
+    showIncludes=-showIncludes
+  fi
+  "$@" $showIncludes > "$tmpdepfile"
+  stat=$?
+  grep -v '^Note: including file: ' "$tmpdepfile"
+  if test $stat -ne 0; then
+    rm -f "$tmpdepfile"
+    exit $stat
+  fi
+  rm -f "$depfile"
+  echo "$object : \\" > "$depfile"
+  # The first sed program below extracts the file names and escapes
+  # backslashes for cygpath.  The second sed program outputs the file
+  # name when reading, but also accumulates all include files in the
+  # hold buffer in order to output them again at the end.  This only
+  # works with sed implementations that can handle large buffers.
+  sed < "$tmpdepfile" -n '
+/^Note: including file:  *\(.*\)/ {
+  s//\1/
+  s/\\/\\\\/g
+  p
+}' | $cygpath_u | sort -u | sed -n '
+s/ /\\ /g
+s/\(.*\)/'"$tab"'\1 \\/p
+s/.\(.*\) \\/\1:/
+H
+$ {
+  s/.*/'"$tab"'/
+  G
+  p
+}' >> "$depfile"
+  echo >> "$depfile" # make sure the fragment doesn't end with a backslash
+  rm -f "$tmpdepfile"
+  ;;
+
+msvc7msys)
+  # This case exists only to let depend.m4 do its work.  It works by
+  # looking at the text of this script.  This case will never be run,
+  # since it is checked for above.
+  exit 1
+  ;;
+
+#nosideeffect)
+  # This comment above is used by automake to tell side-effect
+  # dependency tracking mechanisms from slower ones.
+
+dashmstdout)
+  # Important note: in order to support this mode, a compiler *must*
+  # always write the preprocessed file to stdout, regardless of -o.
+  "$@" || exit $?
+
+  # Remove the call to Libtool.
+  if test "$libtool" = yes; then
+    while test "X$1" != 'X--mode=compile'; do
+      shift
+    done
+    shift
+  fi
+
+  # Remove '-o $object'.
+  IFS=" "
+  for arg
+  do
+    case $arg in
+    -o)
+      shift
+      ;;
+    $object)
+      shift
+      ;;
+    *)
+      set fnord "$@" "$arg"
+      shift # fnord
+      shift # $arg
+      ;;
+    esac
+  done
+
+  test -z "$dashmflag" && dashmflag=-M
+  # Require at least two characters before searching for ':'
+  # in the target name.  This is to cope with DOS-style filenames:
+  # a dependency such as 'c:/foo/bar' could be seen as target 'c' otherwise.
+  "$@" $dashmflag |
+    sed "s|^[$tab ]*[^:$tab ][^:][^:]*:[$tab ]*|$object: |" > "$tmpdepfile"
+  rm -f "$depfile"
+  cat < "$tmpdepfile" > "$depfile"
+  # Some versions of the HPUX 10.20 sed can't process this sed invocation
+  # correctly.  Breaking it into two sed invocations is a workaround.
+  tr ' ' "$nl" < "$tmpdepfile" \
+    | sed -e 's/^\\$//' -e '/^$/d' -e '/:$/d' \
+    | sed -e 's/$/ :/' >> "$depfile"
+  rm -f "$tmpdepfile"
+  ;;
+
+dashXmstdout)
+  # This case only exists to satisfy depend.m4.  It is never actually
+  # run, as this mode is specially recognized in the preamble.
+  exit 1
+  ;;
+
+makedepend)
+  "$@" || exit $?
+  # Remove any Libtool call
+  if test "$libtool" = yes; then
+    while test "X$1" != 'X--mode=compile'; do
+      shift
+    done
+    shift
+  fi
+  # X makedepend
+  shift
+  cleared=no eat=no
+  for arg
+  do
+    case $cleared in
+    no)
+      set ""; shift
+      cleared=yes ;;
+    esac
+    if test $eat = yes; then
+      eat=no
+      continue
+    fi
+    case "$arg" in
+    -D*|-I*)
+      set fnord "$@" "$arg"; shift ;;
+    # Strip any option that makedepend may not understand.  Remove
+    # the object too, otherwise makedepend will parse it as a source file.
+    -arch)
+      eat=yes ;;
+    -*|$object)
+      ;;
+    *)
+      set fnord "$@" "$arg"; shift ;;
+    esac
+  done
+  obj_suffix=`echo "$object" | sed 's/^.*\././'`
+  touch "$tmpdepfile"
+  ${MAKEDEPEND-makedepend} -o"$obj_suffix" -f"$tmpdepfile" "$@"
+  rm -f "$depfile"
+  # makedepend may prepend the VPATH from the source file name to the object.
+  # No need to regex-escape $object, excess matching of '.' is harmless.
+  sed "s|^.*\($object *:\)|\1|" "$tmpdepfile" > "$depfile"
+  # Some versions of the HPUX 10.20 sed can't process the last invocation
+  # correctly.  Breaking it into two sed invocations is a workaround.
+  sed '1,2d' "$tmpdepfile" \
+    | tr ' ' "$nl" \
+    | sed -e 's/^\\$//' -e '/^$/d' -e '/:$/d' \
+    | sed -e 's/$/ :/' >> "$depfile"
+  rm -f "$tmpdepfile" "$tmpdepfile".bak
+  ;;
+
+cpp)
+  # Important note: in order to support this mode, a compiler *must*
+  # always write the preprocessed file to stdout.
+  "$@" || exit $?
+
+  # Remove the call to Libtool.
+  if test "$libtool" = yes; then
+    while test "X$1" != 'X--mode=compile'; do
+      shift
+    done
+    shift
+  fi
+
+  # Remove '-o $object'.
+  IFS=" "
+  for arg
+  do
+    case $arg in
+    -o)
+      shift
+      ;;
+    $object)
+      shift
+      ;;
+    *)
+      set fnord "$@" "$arg"
+      shift # fnord
+      shift # $arg
+      ;;
+    esac
+  done
+
+  "$@" -E \
+    | sed -n -e '/^# [0-9][0-9]* "\([^"]*\)".*/ s:: \1 \\:p' \
+             -e '/^#line [0-9][0-9]* "\([^"]*\)".*/ s:: \1 \\:p' \
+    | sed '$ s: \\$::' > "$tmpdepfile"
+  rm -f "$depfile"
+  echo "$object : \\" > "$depfile"
+  cat < "$tmpdepfile" >> "$depfile"
+  sed < "$tmpdepfile" '/^$/d;s/^ //;s/ \\$//;s/$/ :/' >> "$depfile"
+  rm -f "$tmpdepfile"
+  ;;
+
+msvisualcpp)
+  # Important note: in order to support this mode, a compiler *must*
+  # always write the preprocessed file to stdout.
+  "$@" || exit $?
+
+  # Remove the call to Libtool.
+  if test "$libtool" = yes; then
+    while test "X$1" != 'X--mode=compile'; do
+      shift
+    done
+    shift
+  fi
+
+  IFS=" "
+  for arg
+  do
+    case "$arg" in
+    -o)
+      shift
+      ;;
+    $object)
+      shift
+      ;;
+    "-Gm"|"/Gm"|"-Gi"|"/Gi"|"-ZI"|"/ZI")
+        set fnord "$@"
+        shift
+        shift
+        ;;
+    *)
+        set fnord "$@" "$arg"
+        shift
+        shift
+        ;;
+    esac
+  done
+  "$@" -E 2>/dev/null |
+  sed -n '/^#line [0-9][0-9]* "\([^"]*\)"/ s::\1:p' | $cygpath_u | sort -u > "$tmpdepfile"
+  rm -f "$depfile"
+  echo "$object : \\" > "$depfile"
+  sed < "$tmpdepfile" -n -e 's% %\\ %g' -e '/^\(.*\)$/ s::'"$tab"'\1 \\:p' >> "$depfile"
+  echo "$tab" >> "$depfile"
+  sed < "$tmpdepfile" -n -e 's% %\\ %g' -e '/^\(.*\)$/ s::\1\::p' >> "$depfile"
+  rm -f "$tmpdepfile"
+  ;;
+
+msvcmsys)
+  # This case exists only to let depend.m4 do its work.  It works by
+  # looking at the text of this script.  This case will never be run,
+  # since it is checked for above.
+  exit 1
+  ;;
+
+none)
+  exec "$@"
+  ;;
+
+*)
+  echo "Unknown depmode $depmode" 1>&2
+  exit 1
+  ;;
+esac
+
+exit 0
+
+# Local Variables:
+# mode: shell-script
+# sh-indentation: 2
+# eval: (add-hook 'write-file-hooks 'time-stamp)
+# time-stamp-start: "scriptversion="
+# time-stamp-format: "%:y-%02m-%02d.%02H"
+# time-stamp-time-zone: "UTC"
+# time-stamp-end: "; # UTC"
+# End:

bin/dependencies

@@ -1,4 +1,4 @@
-#!/usr/bin/perl -w
+#!/usr/bin/env perl
 #
 # Copyright by The HDF Group.
 # Copyright by the Board of Trustees of the University of Illinois.
@@ -7,10 +7,12 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #
+use warnings;
+
 my $depend_file;
 my $new_depend_file;
 my $srcdir;

bin/deploy

@@ -7,7 +7,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #

bin/distdep

@@ -1,4 +1,7 @@
-#!/usr/bin/perl -p
+#!/bin/sh
+#! -*-perl-*-
+eval 'exec perl -p -x -S $0 ${1+"$@"}'
+  if 0;
 #
 # Copyright by The HDF Group.
 # Copyright by the Board of Trustees of the University of Illinois.
@@ -7,7 +10,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #

bin/errors

@@ -1,5 +1,6 @@
-#!/usr/local/bin/perl -w
+#!/usr/bin/env perl
 require 5.003;
+use warnings;
 use Text::Tabs;
 
 # NOTE: THE FORMAT OF HRETURN_ERROR AND HGOTO_ERROR MACROS HAS
@@ -12,11 +13,11 @@ use Text::Tabs;
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #
-# Robb Matzke, matzke@llnl.gov
+# Robb Matzke
 # 30 Aug 1997
 #
 # Purpose: This script will read standard input which should be a

bin/format_source

@@ -0,0 +1,26 @@
+#!/bin/bash
+#
+# Recursively format all C & C++ sources and header files, except those in the
+# 'config' directory and generated files, such as H5LTanalyze.c, etc.
+#
+# Note that any files or directories that are excluded here should also be
+# added to the 'exclude' list in .github/workflows/clang-format-check.yml
+#
+# (Remember to update both bin/format_source and bin/format_source_patch)
+
+find . \( -type d -path ./config -prune -and -not -path ./config \) \
+    -or \( \( \! \( \
+        -name H5LTanalyze.c \
+        -or -name H5LTparse.c \
+        -or -name H5LTparse.h \
+        -or -name H5Epubgen.h \
+        -or -name H5Einit.h \
+        -or -name H5Eterm.h \
+        -or -name H5Edefin.h \
+        -or -name H5version.h \
+        -or -name H5overflow.h \
+        \) \) \
+    -and \( -iname *.h -or -iname *.c -or -iname *.cpp -or -iname *.hpp \) \) \
+    | xargs clang-format -style=file -i -fallback-style=none
+
+exit 0

bin/format_source_patch

@@ -0,0 +1,34 @@
+#!/bin/bash
+#
+# Recursively format all C & C++ sources and header files, except those in the
+# 'config' directory and generated files, such as H5LTanalyze.c, etc.
+#
+# Note that any files or directories that are excluded here should also be
+# added to the 'exclude' list in .github/workflows/clang-format-check.yml
+#
+# (Remember to update both bin/format_source and bin/format_source_patch)
+
+find . \( -type d -path ./config -prune -and -not -path ./config \) \
+    -or \( \( \! \( \
+        -name H5LTanalyze.c \
+        -or -name H5LTparse.c \
+        -or -name H5LTparse.h \
+        -or -name H5Epubgen.h \
+        -or -name H5Einit.h \
+        -or -name H5Eterm.h \
+        -or -name H5Edefin.h \
+        -or -name H5version.h \
+        -or -name H5overflow.h \
+        \) \) \
+    -and \( -iname *.h -or -iname *.c -or -iname *.cpp -or -iname *.hpp \) \) \
+    | xargs clang-format -style=file -i -fallback-style=none
+
+git diff > clang_format.patch
+
+# Delete if 0 size
+if [ ! -s clang_format.patch ]
+then
+    rm clang_format.patch
+fi
+
+exit 0

bin/gcov_script

@@ -7,7 +7,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 

bin/genparser

@@ -1,12 +1,12 @@
 #! /bin/bash
 #
-# Copyright by The HDF Group.                                              
-# All rights reserved.                                                     
-#                                                                          
-# This file is part of HDF5. The full HDF5 copyright notice, including     
-# terms governing use, modification, and redistribution, is contained in   
+# Copyright by The HDF Group.
+# All rights reserved.
+#
+# This file is part of HDF5. The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #
@@ -27,7 +27,7 @@
 # IMPORTANT OS X NOTE
 #
 # If you are using OS X, you will probably not have flex or bison
-# installed. In addtion, even if you do have bison installed, the bison
+# installed. In addition, even if you do have bison installed, the bison
 # version you have installed may also have a bug that makes it unable to
 # process our input files.
 #
@@ -200,28 +200,34 @@ if [ "$verbose" = true ] ; then
 fi
 ${HDF5_FLEX} --nounistd -PH5LTyy -o ${path_to_hl_src}/H5LTanalyze.c ${path_to_hl_src}/H5LTanalyze.l
 
-# fix H5LTparse.c to declare H5LTyyparse return type as an hid_t
-# instead of int.  Currently the generated function H5LTyyparse is
+# fix H5LTparse.c and H5LTlparse.h to declare H5LTyyparse return type as an
+# hid_t instead of int.  Currently the generated function H5LTyyparse is
 # generated with a return value of type int, which is a mapping to the
 # flex yyparse function.  The return value in the HL library should be
-# an hid_t. 
-# I propose to not use flex to generate this function, but for now I am 
+# an hid_t.
+# I propose to not use flex to generate this function, but for now I am
 # adding a perl command to find and replace this function declaration in
 # H5LTparse.c.
 perl -0777 -pi -e 's/int yyparse/hid_t yyparse/igs' ${path_to_hl_src}/H5LTparse.c
 perl -0777 -pi -e 's/int\nyyparse/hid_t\nyyparse/igs' ${path_to_hl_src}/H5LTparse.c
 perl -0777 -pi -e 's/int H5LTyyparse/hid_t H5LTyyparse/igs' ${path_to_hl_src}/H5LTparse.c
+perl -0777 -pi -e 's/int yyparse/hid_t yyparse/igs' ${path_to_hl_src}/H5LTparse.h
+perl -0777 -pi -e 's/int\nyyparse/hid_t\nyyparse/igs' ${path_to_hl_src}/H5LTparse.h
+perl -0777 -pi -e 's/int H5LTyyparse/hid_t H5LTyyparse/igs' ${path_to_hl_src}/H5LTparse.h
 
 # Add code that disables warnings in the flex/bison-generated code.
 #
 # Note that the GCC pragmas did not exist until gcc 4.2. Earlier versions
 # will simply ignore them, but we want to avoid those warnings.
+#
+# Note also that although clang defines __GNUC__, it doesn't support every
+# warning that GCC does.
 for f in ${path_to_hl_src}/H5LTparse.c ${path_to_hl_src}/H5LTanalyze.c
 do
-    echo '#if defined __GNUC__ && 402 <= __GNUC__ * 100 + __GNUC_MINOR__    ' >> tmp.out
+    echo '#if defined (__GNUC__)                                            ' >> tmp.out
+    echo '#if ((__GNUC__ * 100) + __GNUC_MINOR__) >= 402                    ' >> tmp.out
     echo '#pragma GCC diagnostic ignored "-Wconversion"                     ' >> tmp.out
     echo '#pragma GCC diagnostic ignored "-Wimplicit-function-declaration"  ' >> tmp.out
-    echo '#pragma GCC diagnostic ignored "-Wlarger-than="                   ' >> tmp.out
     echo '#pragma GCC diagnostic ignored "-Wmissing-prototypes"             ' >> tmp.out
     echo '#pragma GCC diagnostic ignored "-Wnested-externs"                 ' >> tmp.out
     echo '#pragma GCC diagnostic ignored "-Wold-style-definition"           ' >> tmp.out
@@ -230,11 +236,19 @@ do
     echo '#pragma GCC diagnostic ignored "-Wsign-conversion"                ' >> tmp.out
     echo '#pragma GCC diagnostic ignored "-Wstrict-overflow"                ' >> tmp.out
     echo '#pragma GCC diagnostic ignored "-Wstrict-prototypes"              ' >> tmp.out
+    echo '#if !defined (__clang__)                                          ' >> tmp.out
+    echo '#pragma GCC diagnostic ignored "-Wlarger-than="                   ' >> tmp.out
+    echo '#pragma GCC diagnostic ignored "-Wsuggest-attribute=const"        ' >> tmp.out
     echo '#pragma GCC diagnostic ignored "-Wsuggest-attribute=pure"         ' >> tmp.out
+    echo '#endif                                                            ' >> tmp.out
     echo '#pragma GCC diagnostic ignored "-Wswitch-default"                 ' >> tmp.out
     echo '#pragma GCC diagnostic ignored "-Wunused-function"                ' >> tmp.out
     echo '#pragma GCC diagnostic ignored "-Wunused-macros"                  ' >> tmp.out
     echo '#pragma GCC diagnostic ignored "-Wunused-parameter"               ' >> tmp.out
+    echo '#endif                                                            ' >> tmp.out
+    echo '#if ((__GNUC__ * 100) + __GNUC_MINOR__) >= 600                    ' >> tmp.out
+    echo '#pragma GCC diagnostic ignored "-Wnull-dereference"               ' >> tmp.out
+    echo '#endif                                                            ' >> tmp.out
     echo '#elif defined __SUNPRO_CC                                         ' >> tmp.out
     echo '#pragma disable_warn                                              ' >> tmp.out
     echo '#elif defined _MSC_VER                                            ' >> tmp.out

bin/h5cc.in

@@ -7,7 +7,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 ##
@@ -40,7 +40,7 @@ HL="@HL@"
 ##    $CLINKER $H5BLD_CPPFLAGS $CPPFLAGS $H5BLD_CFLAGS $CFLAGS $LDFLAGS   ##
 ##    $LIBS $clibpath $link_objs $link_args $shared_link                  ##
 ##                                                                        ##
-## These settings can be overriden by setting HDF5_CFLAGS,                ##
+## These settings can be overridden by setting HDF5_CFLAGS,               ##
 ## HDF5_CPPFLAGS, HDF5_LDFLAGS, or HDF5_LIBS in the environment.          ##
 ##                                                                        ##
 ############################################################################
@@ -83,10 +83,10 @@ CLINKERBASE="@CC@"
 # CFLAGS, CPPFLAGS and LDFLAGS are reserved for use by the script user.
 # FLAGS brought from the hdf5 build are put in H5BLD_*FLAGS.
 
-# User's CPPFLAGS and CFLAGS come after their H5BLD counterparts.  User's 
-# LDFLAGS come just before clibpath, user's LIBS come after $link_objs and 
-# before the hdf5 libraries in $link_args, followed by any external library 
-# paths and libraries from AM_LDFLAGS, LDFLAGS, AM_LIBS or LIBS carried in 
+# User's CPPFLAGS and CFLAGS come after their H5BLD counterparts.  User's
+# LDFLAGS come just before clibpath, user's LIBS come after $link_objs and
+# before the hdf5 libraries in $link_args, followed by any external library
+# paths and libraries from AM_LDFLAGS, LDFLAGS, AM_LIBS or LIBS carried in
 # from the hdf5 build. The order of the flags is intended to give precedence
 # to the user's flags.
 H5BLD_CFLAGS="@AM_CFLAGS@ @CFLAGS@"
@@ -102,9 +102,9 @@ LDFLAGS="${HDF5_LDFLAGS:-$LDFLAGSBASE}"
 LIBS="${HDF5_LIBS:-$LIBSBASE}"
 
 # If a static library is available, the default will be to use it.  If the only
-# available library is shared, it will be used by default.  The user can 
+# available library is shared, it will be used by default.  The user can
 # override either default, although choosing an unavailable library will result
-# in link errors.  
+# in link errors.
 STATIC_AVAILABLE="@enable_static@"
 if test "${STATIC_AVAILABLE}" = "yes"; then
   USE_SHARED_LIB="${HDF5_USE_SHLIB:-no}"
@@ -114,13 +114,6 @@ fi
 
 
 usage() {
-  # A wonderfully informative "usage" message.
-  echo "usage: $prog_name [OPTIONS] <compile line>"
-  echo "  OPTIONS:"
-  echo "    -help        This help message."
-  echo "    -echo        Show all the shell commands executed"
-  echo "    -prefix=DIR  Prefix directory to find HDF5 lib/ and include/"
-  echo "                   subdirectories [default: $prefix]"
   # A wonderfully informative "usage" message.
   echo "usage: $prog_name [OPTIONS] <compile line>"
   echo "  OPTIONS:"
@@ -147,11 +140,11 @@ usage() {
   echo "   HDF5_CC                  -  use a different C compiler"
   echo "   HDF5_CLINKER             -  use a different linker"
   echo "   HDF5_USE_SHLIB=[yes|no]  -  use shared or static version of the HDF5 library"
-  echo "                                 [default: no except when built with only" 
+  echo "                                 [default: no except when built with only"
   echo "                                           shared libraries]"
   echo " "
   echo " You can also add or change paths and flags to the compile line using"
-  echo " the following environment varibles or by assigning them to their counterparts"
+  echo " the following environment variables or by assigning them to their counterparts"
   echo " in the 'Things You Can Modify to Override...'" section of $prog_name
   echo " "
   echo "  Variable              Current value to be replaced"
@@ -325,7 +318,7 @@ fi
 
 if test "x$do_link" = "xyes"; then
   shared_link=""
-# conditionnaly link with the hl library  
+# conditionally link with the hl library
   if test "X$HL" = "Xhl"; then
    libraries=" $libraries -lhdf5_hl -lhdf5 "
   else
@@ -386,10 +379,10 @@ if test "x$do_link" = "xyes"; then
   # module. It's okay if they're included twice in the compile line.
   link_args="$link_args $H5BLD_LDFLAGS $H5BLD_LIBS"
 
-  # User's CPPFLAGS and CFLAGS come after their H5BLD counterparts.  User's 
-  # LDFLAGS come just before clibpath, user's LIBS come after $link_objs and 
-  # before the hdf5 libraries in $link_args, followed by any external library 
-  # paths and libraries from AM_LDFLAGS, LDFLAGS, AM_LIBS or LIBS carried in 
+  # User's CPPFLAGS and CFLAGS come after their H5BLD counterparts.  User's
+  # LDFLAGS come just before clibpath, user's LIBS come after $link_objs and
+  # before the hdf5 libraries in $link_args, followed by any external library
+  # paths and libraries from AM_LDFLAGS, LDFLAGS, AM_LIBS or LIBS carried in
   # from the hdf5 build. The order of the flags is intended to give precedence
   # to the user's flags.
   $SHOW $CLINKER $H5BLD_CPPFLAGS $CPPFLAGS $H5BLD_CFLAGS $CFLAGS $LDFLAGS $clibpath $link_objs $LIBS $link_args $shared_link

bin/h5redeploy.in

@@ -7,7 +7,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #

bin/h5vers

@@ -13,11 +13,11 @@ use strict;
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #
-# Robb Matzke <matzke@llnl.gov>
+# Robb Matzke
 # 17 July 1998
 
 ### Purpose
@@ -66,7 +66,7 @@ use strict;
 # ./H5public.h or ./src/H5public.h.
 #
 # If the version number is changed (either `-s' or `-i' was used on
-# the command line) then the first line of the README.txt and RELEASE.txt files
+# the command line) then the version line of the README.md and RELEASE.txt files
 # one directory above the H5public.h file is also modified so it looks
 # something like: This is hdf5-1.2.3-pre1 currently under development.
 # The AC_INIT macro in configure.ac will also change in this case to be
@@ -156,10 +156,10 @@ while ($_ = shift) {
 }
 die "mutually exclusive options given\n" if $set && $inc;
 
-# Determine file to use as H5public.h, README.txt,
+# Determine file to use as H5public.h, README.md,
 # release_docs/RELEASE.txt, configure.ac, windows/src/H5pubconf.h
 # config/lt_vers.am and config/cmake/scripts/HDF5config.cmake. 
-# The README.txt, release_docs/RELEASE.txt, configure.ac, 
+# The README.md, release_docs/RELEASE.txt, configure.ac, 
 # windows/src/H5pubconf.h, config/lt_vers.am and
 # config/cmake/scripts/HDF5config.cmake
 # files are always in the directory above H5public.h
@@ -178,9 +178,9 @@ die "unable to read file: $LT_VERS\n" unless -r $file;
 my $HDF5CONFIGCMAKE = $file;
 $HDF5CONFIGCMAKE =~ s/[^\/]*$/..\/config\/cmake\/scripts\/HDF5config.cmake/;
 die "unable to read file: $HDF5CONFIGCMAKE\n" unless -r $file;
-# README.txt
+# README.md
 my $README = $file;
-$README =~ s/[^\/]*$/..\/README.txt/;
+$README =~ s/[^\/]*$/..\/README.md/;
 die "unable to read file: $README\n" unless -r $file;
 # release_docs/RELEASE.txt
 my $RELEASE = $file;
@@ -213,7 +213,7 @@ my (@curver) = getvers $contents;
 # Determine the new version number.
 my @newver; #new version
 if ($set) {
-  if ($set =~ /(\d+)\.(\d+)\.(\d+)(-([a-zA-Z]\w*))?/) {
+  if ($set =~ /(\d+)\.(\d+)\.(\d+)(-([\da-zA-Z]\w*))?/) {
     @newver = ($1, $2, $3, $5);
   } elsif ($set =~ /(\d+)\D+(\d+)\D+(\d+)(\s*\(([a-zA-Z]\w*)\))?\D*$/) {
     @newver = ($1, $2, $3, $5);
@@ -303,7 +303,7 @@ if ($LT_VERS && $version_increased) {
 #  close FILE;
 }
 
-# Update the README.txt file
+# Update the README.md file
 if ($README) {
   open FILE, $README or die "$README: $!\n";
   my @contents = <FILE>;

bin/install-sh

@@ -0,0 +1,501 @@
+#!/bin/sh
+# install - install a program, script, or datafile
+
+scriptversion=2013-12-25.23; # UTC
+
+# This originates from X11R5 (mit/util/scripts/install.sh), which was
+# later released in X11R6 (xc/config/util/install.sh) with the
+# following copyright and license.
+#
+# Copyright (C) 1994 X Consortium
+#
+# Permission is hereby granted, free of charge, to any person obtaining a copy
+# of this software and associated documentation files (the "Software"), to
+# deal in the Software without restriction, including without limitation the
+# rights to use, copy, modify, merge, publish, distribute, sublicense, and/or
+# sell copies of the Software, and to permit persons to whom the Software is
+# furnished to do so, subject to the following conditions:
+#
+# The above copyright notice and this permission notice shall be included in
+# all copies or substantial portions of the Software.
+#
+# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.  IN NO EVENT SHALL THE
+# X CONSORTIUM BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN
+# AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNEC-
+# TION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
+#
+# Except as contained in this notice, the name of the X Consortium shall not
+# be used in advertising or otherwise to promote the sale, use or other deal-
+# ings in this Software without prior written authorization from the X Consor-
+# tium.
+#
+#
+# FSF changes to this file are in the public domain.
+#
+# Calling this script install-sh is preferred over install.sh, to prevent
+# 'make' implicit rules from creating a file called install from it
+# when there is no Makefile.
+#
+# This script is compatible with the BSD install script, but was written
+# from scratch.
+
+tab='	'
+nl='
+'
+IFS=" $tab$nl"
+
+# Set DOITPROG to "echo" to test this script.
+
+doit=${DOITPROG-}
+doit_exec=${doit:-exec}
+
+# Put in absolute file names if you don't have them in your path;
+# or use environment vars.
+
+chgrpprog=${CHGRPPROG-chgrp}
+chmodprog=${CHMODPROG-chmod}
+chownprog=${CHOWNPROG-chown}
+cmpprog=${CMPPROG-cmp}
+cpprog=${CPPROG-cp}
+mkdirprog=${MKDIRPROG-mkdir}
+mvprog=${MVPROG-mv}
+rmprog=${RMPROG-rm}
+stripprog=${STRIPPROG-strip}
+
+posix_mkdir=
+
+# Desired mode of installed file.
+mode=0755
+
+chgrpcmd=
+chmodcmd=$chmodprog
+chowncmd=
+mvcmd=$mvprog
+rmcmd="$rmprog -f"
+stripcmd=
+
+src=
+dst=
+dir_arg=
+dst_arg=
+
+copy_on_change=false
+is_target_a_directory=possibly
+
+usage="\
+Usage: $0 [OPTION]... [-T] SRCFILE DSTFILE
+   or: $0 [OPTION]... SRCFILES... DIRECTORY
+   or: $0 [OPTION]... -t DIRECTORY SRCFILES...
+   or: $0 [OPTION]... -d DIRECTORIES...
+
+In the 1st form, copy SRCFILE to DSTFILE.
+In the 2nd and 3rd, copy all SRCFILES to DIRECTORY.
+In the 4th, create DIRECTORIES.
+
+Options:
+     --help     display this help and exit.
+     --version  display version info and exit.
+
+  -c            (ignored)
+  -C            install only if different (preserve the last data modification time)
+  -d            create directories instead of installing files.
+  -g GROUP      $chgrpprog installed files to GROUP.
+  -m MODE       $chmodprog installed files to MODE.
+  -o USER       $chownprog installed files to USER.
+  -s            $stripprog installed files.
+  -t DIRECTORY  install into DIRECTORY.
+  -T            report an error if DSTFILE is a directory.
+
+Environment variables override the default commands:
+  CHGRPPROG CHMODPROG CHOWNPROG CMPPROG CPPROG MKDIRPROG MVPROG
+  RMPROG STRIPPROG
+"
+
+while test $# -ne 0; do
+  case $1 in
+    -c) ;;
+
+    -C) copy_on_change=true;;
+
+    -d) dir_arg=true;;
+
+    -g) chgrpcmd="$chgrpprog $2"
+        shift;;
+
+    --help) echo "$usage"; exit $?;;
+
+    -m) mode=$2
+        case $mode in
+          *' '* | *"$tab"* | *"$nl"* | *'*'* | *'?'* | *'['*)
+            echo "$0: invalid mode: $mode" >&2
+            exit 1;;
+        esac
+        shift;;
+
+    -o) chowncmd="$chownprog $2"
+        shift;;
+
+    -s) stripcmd=$stripprog;;
+
+    -t)
+        is_target_a_directory=always
+        dst_arg=$2
+        # Protect names problematic for 'test' and other utilities.
+        case $dst_arg in
+          -* | [=\(\)!]) dst_arg=./$dst_arg;;
+        esac
+        shift;;
+
+    -T) is_target_a_directory=never;;
+
+    --version) echo "$0 $scriptversion"; exit $?;;
+
+    --) shift
+        break;;
+
+    -*) echo "$0: invalid option: $1" >&2
+        exit 1;;
+
+    *)  break;;
+  esac
+  shift
+done
+
+# We allow the use of options -d and -T together, by making -d
+# take the precedence; this is for compatibility with GNU install.
+
+if test -n "$dir_arg"; then
+  if test -n "$dst_arg"; then
+    echo "$0: target directory not allowed when installing a directory." >&2
+    exit 1
+  fi
+fi
+
+if test $# -ne 0 && test -z "$dir_arg$dst_arg"; then
+  # When -d is used, all remaining arguments are directories to create.
+  # When -t is used, the destination is already specified.
+  # Otherwise, the last argument is the destination.  Remove it from $@.
+  for arg
+  do
+    if test -n "$dst_arg"; then
+      # $@ is not empty: it contains at least $arg.
+      set fnord "$@" "$dst_arg"
+      shift # fnord
+    fi
+    shift # arg
+    dst_arg=$arg
+    # Protect names problematic for 'test' and other utilities.
+    case $dst_arg in
+      -* | [=\(\)!]) dst_arg=./$dst_arg;;
+    esac
+  done
+fi
+
+if test $# -eq 0; then
+  if test -z "$dir_arg"; then
+    echo "$0: no input file specified." >&2
+    exit 1
+  fi
+  # It's OK to call 'install-sh -d' without argument.
+  # This can happen when creating conditional directories.
+  exit 0
+fi
+
+if test -z "$dir_arg"; then
+  if test $# -gt 1 || test "$is_target_a_directory" = always; then
+    if test ! -d "$dst_arg"; then
+      echo "$0: $dst_arg: Is not a directory." >&2
+      exit 1
+    fi
+  fi
+fi
+
+if test -z "$dir_arg"; then
+  do_exit='(exit $ret); exit $ret'
+  trap "ret=129; $do_exit" 1
+  trap "ret=130; $do_exit" 2
+  trap "ret=141; $do_exit" 13
+  trap "ret=143; $do_exit" 15
+
+  # Set umask so as not to create temps with too-generous modes.
+  # However, 'strip' requires both read and write access to temps.
+  case $mode in
+    # Optimize common cases.
+    *644) cp_umask=133;;
+    *755) cp_umask=22;;
+
+    *[0-7])
+      if test -z "$stripcmd"; then
+        u_plus_rw=
+      else
+        u_plus_rw='% 200'
+      fi
+      cp_umask=`expr '(' 777 - $mode % 1000 ')' $u_plus_rw`;;
+    *)
+      if test -z "$stripcmd"; then
+        u_plus_rw=
+      else
+        u_plus_rw=,u+rw
+      fi
+      cp_umask=$mode$u_plus_rw;;
+  esac
+fi
+
+for src
+do
+  # Protect names problematic for 'test' and other utilities.
+  case $src in
+    -* | [=\(\)!]) src=./$src;;
+  esac
+
+  if test -n "$dir_arg"; then
+    dst=$src
+    dstdir=$dst
+    test -d "$dstdir"
+    dstdir_status=$?
+  else
+
+    # Waiting for this to be detected by the "$cpprog $src $dsttmp" command
+    # might cause directories to be created, which would be especially bad
+    # if $src (and thus $dsttmp) contains '*'.
+    if test ! -f "$src" && test ! -d "$src"; then
+      echo "$0: $src does not exist." >&2
+      exit 1
+    fi
+
+    if test -z "$dst_arg"; then
+      echo "$0: no destination specified." >&2
+      exit 1
+    fi
+    dst=$dst_arg
+
+    # If destination is a directory, append the input filename; won't work
+    # if double slashes aren't ignored.
+    if test -d "$dst"; then
+      if test "$is_target_a_directory" = never; then
+        echo "$0: $dst_arg: Is a directory" >&2
+        exit 1
+      fi
+      dstdir=$dst
+      dst=$dstdir/`basename "$src"`
+      dstdir_status=0
+    else
+      dstdir=`dirname "$dst"`
+      test -d "$dstdir"
+      dstdir_status=$?
+    fi
+  fi
+
+  obsolete_mkdir_used=false
+
+  if test $dstdir_status != 0; then
+    case $posix_mkdir in
+      '')
+        # Create intermediate dirs using mode 755 as modified by the umask.
+        # This is like FreeBSD 'install' as of 1997-10-28.
+        umask=`umask`
+        case $stripcmd.$umask in
+          # Optimize common cases.
+          *[2367][2367]) mkdir_umask=$umask;;
+          .*0[02][02] | .[02][02] | .[02]) mkdir_umask=22;;
+
+          *[0-7])
+            mkdir_umask=`expr $umask + 22 \
+              - $umask % 100 % 40 + $umask % 20 \
+              - $umask % 10 % 4 + $umask % 2
+            `;;
+          *) mkdir_umask=$umask,go-w;;
+        esac
+
+        # With -d, create the new directory with the user-specified mode.
+        # Otherwise, rely on $mkdir_umask.
+        if test -n "$dir_arg"; then
+          mkdir_mode=-m$mode
+        else
+          mkdir_mode=
+        fi
+
+        posix_mkdir=false
+        case $umask in
+          *[123567][0-7][0-7])
+            # POSIX mkdir -p sets u+wx bits regardless of umask, which
+            # is incompatible with FreeBSD 'install' when (umask & 300) != 0.
+            ;;
+          *)
+            tmpdir=${TMPDIR-/tmp}/ins$RANDOM-$$
+            trap 'ret=$?; rmdir "$tmpdir/d" "$tmpdir" 2>/dev/null; exit $ret' 0
+
+            if (umask $mkdir_umask &&
+                exec $mkdirprog $mkdir_mode -p -- "$tmpdir/d") >/dev/null 2>&1
+            then
+              if test -z "$dir_arg" || {
+                   # Check for POSIX incompatibilities with -m.
+                   # HP-UX 11.23 and IRIX 6.5 mkdir -m -p sets group- or
+                   # other-writable bit of parent directory when it shouldn't.
+                   # FreeBSD 6.1 mkdir -m -p sets mode of existing directory.
+                   ls_ld_tmpdir=`ls -ld "$tmpdir"`
+                   case $ls_ld_tmpdir in
+                     d????-?r-*) different_mode=700;;
+                     d????-?--*) different_mode=755;;
+                     *) false;;
+                   esac &&
+                   $mkdirprog -m$different_mode -p -- "$tmpdir" && {
+                     ls_ld_tmpdir_1=`ls -ld "$tmpdir"`
+                     test "$ls_ld_tmpdir" = "$ls_ld_tmpdir_1"
+                   }
+                 }
+              then posix_mkdir=:
+              fi
+              rmdir "$tmpdir/d" "$tmpdir"
+            else
+              # Remove any dirs left behind by ancient mkdir implementations.
+              rmdir ./$mkdir_mode ./-p ./-- 2>/dev/null
+            fi
+            trap '' 0;;
+        esac;;
+    esac
+
+    if
+      $posix_mkdir && (
+        umask $mkdir_umask &&
+        $doit_exec $mkdirprog $mkdir_mode -p -- "$dstdir"
+      )
+    then :
+    else
+
+      # The umask is ridiculous, or mkdir does not conform to POSIX,
+      # or it failed possibly due to a race condition.  Create the
+      # directory the slow way, step by step, checking for races as we go.
+
+      case $dstdir in
+        /*) prefix='/';;
+        [-=\(\)!]*) prefix='./';;
+        *)  prefix='';;
+      esac
+
+      oIFS=$IFS
+      IFS=/
+      set -f
+      set fnord $dstdir
+      shift
+      set +f
+      IFS=$oIFS
+
+      prefixes=
+
+      for d
+      do
+        test X"$d" = X && continue
+
+        prefix=$prefix$d
+        if test -d "$prefix"; then
+          prefixes=
+        else
+          if $posix_mkdir; then
+            (umask=$mkdir_umask &&
+             $doit_exec $mkdirprog $mkdir_mode -p -- "$dstdir") && break
+            # Don't fail if two instances are running concurrently.
+            test -d "$prefix" || exit 1
+          else
+            case $prefix in
+              *\'*) qprefix=`echo "$prefix" | sed "s/'/'\\\\\\\\''/g"`;;
+              *) qprefix=$prefix;;
+            esac
+            prefixes="$prefixes '$qprefix'"
+          fi
+        fi
+        prefix=$prefix/
+      done
+
+      if test -n "$prefixes"; then
+        # Don't fail if two instances are running concurrently.
+        (umask $mkdir_umask &&
+         eval "\$doit_exec \$mkdirprog $prefixes") ||
+          test -d "$dstdir" || exit 1
+        obsolete_mkdir_used=true
+      fi
+    fi
+  fi
+
+  if test -n "$dir_arg"; then
+    { test -z "$chowncmd" || $doit $chowncmd "$dst"; } &&
+    { test -z "$chgrpcmd" || $doit $chgrpcmd "$dst"; } &&
+    { test "$obsolete_mkdir_used$chowncmd$chgrpcmd" = false ||
+      test -z "$chmodcmd" || $doit $chmodcmd $mode "$dst"; } || exit 1
+  else
+
+    # Make a couple of temp file names in the proper directory.
+    dsttmp=$dstdir/_inst.$$_
+    rmtmp=$dstdir/_rm.$$_
+
+    # Trap to clean up those temp files at exit.
+    trap 'ret=$?; rm -f "$dsttmp" "$rmtmp" && exit $ret' 0
+
+    # Copy the file name to the temp name.
+    (umask $cp_umask && $doit_exec $cpprog "$src" "$dsttmp") &&
+
+    # and set any options; do chmod last to preserve setuid bits.
+    #
+    # If any of these fail, we abort the whole thing.  If we want to
+    # ignore errors from any of these, just make sure not to ignore
+    # errors from the above "$doit $cpprog $src $dsttmp" command.
+    #
+    { test -z "$chowncmd" || $doit $chowncmd "$dsttmp"; } &&
+    { test -z "$chgrpcmd" || $doit $chgrpcmd "$dsttmp"; } &&
+    { test -z "$stripcmd" || $doit $stripcmd "$dsttmp"; } &&
+    { test -z "$chmodcmd" || $doit $chmodcmd $mode "$dsttmp"; } &&
+
+    # If -C, don't bother to copy if it wouldn't change the file.
+    if $copy_on_change &&
+       old=`LC_ALL=C ls -dlL "$dst"     2>/dev/null` &&
+       new=`LC_ALL=C ls -dlL "$dsttmp"  2>/dev/null` &&
+       set -f &&
+       set X $old && old=:$2:$4:$5:$6 &&
+       set X $new && new=:$2:$4:$5:$6 &&
+       set +f &&
+       test "$old" = "$new" &&
+       $cmpprog "$dst" "$dsttmp" >/dev/null 2>&1
+    then
+      rm -f "$dsttmp"
+    else
+      # Rename the file to the real destination.
+      $doit $mvcmd -f "$dsttmp" "$dst" 2>/dev/null ||
+
+      # The rename failed, perhaps because mv can't rename something else
+      # to itself, or perhaps because mv is so ancient that it does not
+      # support -f.
+      {
+        # Now remove or move aside any old file at destination location.
+        # We try this two ways since rm can't unlink itself on some
+        # systems and the destination file might be busy for other
+        # reasons.  In this case, the final cleanup might fail but the new
+        # file should still install successfully.
+        {
+          test ! -f "$dst" ||
+          $doit $rmcmd -f "$dst" 2>/dev/null ||
+          { $doit $mvcmd -f "$dst" "$rmtmp" 2>/dev/null &&
+            { $doit $rmcmd -f "$rmtmp" 2>/dev/null; :; }
+          } ||
+          { echo "$0: cannot unlink or rename $dst" >&2
+            (exit 1); exit 1
+          }
+        } &&
+
+        # Now rename the file to the real destination.
+        $doit $mvcmd "$dsttmp" "$dst"
+      }
+    fi || exit 1
+
+    trap '' 0
+  fi
+done
+
+# Local variables:
+# eval: (add-hook 'write-file-hooks 'time-stamp)
+# time-stamp-start: "scriptversion="
+# time-stamp-format: "%:y-%02m-%02d.%02H"
+# time-stamp-time-zone: "UTC"
+# time-stamp-end: "; # UTC"
+# End:

bin/iostats

@@ -1,4 +1,4 @@
-#!/usr/bin/perl
+#!/usr/bin/env perl
 #
 # Copyright by The HDF Group.
 # Copyright by the Board of Trustees of the University of Illinois.
@@ -7,7 +7,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #

bin/locate_sw

@@ -1,238 +0,0 @@
-#!/bin/sh
-#
-# Copyright by The HDF Group.
-# Copyright by the Board of Trustees of the University of Illinois.
-# All rights reserved.
-#
-# This file is part of HDF5.  The full HDF5 copyright notice, including
-# terms governing use, modification, and redistribution, is contained in
-# the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
-# If you do not have access to either file, you may request a copy from
-# help@hdfgroup.org.
-#
-
-# Try to locate the software as named in argument.
-# This is a sequential search of all possible locations of the software.
-# Usage: locate_sw <SW-Name>
-# It prints a string showing the paths leading to the include, lib and bin
-# directory of the software, separated by colons.  E.g., if the software is
-# located in /usr/sdt/*, it prints
-# /usr/sdt/include:/usr/sdt/lib:/usr/sdt/bin
-# Any component that is not found will be returned as an empty string. E.g.,
-# if somehow the header files of the software are not found, it prints
-# :/usr/sdt/lib;/usr/sdt/bin
-
-# Function definitions
-USAGE()
-{
-    echo "Usage: locate_sw <SW-Name>"
-    echo "    where <SW-Name> can be hdf4, hdf5, zlib"
-    echo "    It prints the paths leading the header files (include),"
-    echo "    library (lib), and tools (bin).   E.g.,"
-    echo "    /usr/sdt/include:/usr/sdt/lib:/usr/sdt/bin"
-    echo "    Any component that is not found will be returned as an empty string. E.g.,"
-    echo "    if somehow the header files of the software are not found, it prints"
-    echo "    :/usr/sdt/lib;/usr/sdt/bin"
-    echo "Exit code: 0 if software located; otherwise non-zero"
-}
-
-# locate hdf4 software
-locate_hdf4()
-{
-# this default is the best guess of locating hdf4 software
-swpaths_defaults="/usr/ncsa /usr/sdt /usr/local"
-swpaths=
-
-case "$OSname" in
-    SunOS)
-        case "$OSrelease" in
-            5.7)
-               swpaths="/afs/ncsa/packages/hdf/SunOS_5.7"
-               ;;
-	    *)
-            # use default
-	       ;;
-        esac
-        ;;
-    HP-UX)
-        case "$OSrelease" in
-	   B.11.00)
-	        swpaths="/afs/ncsa/packages/hdf/HPUX_11.00"
-               ;;
-           *)
-           # use default
-              ;;
-        esac
-	;;
-    Linux)
-	swpaths="/afs/ncsa/packages/hdf/Linux"
-	;;
-    OSF1)
-	swpaths="/afs/ncsa/packages/hdf/OSF1_V4.0"
-	;;
-    *)
-	# just use the defaults
-	;;
-esac
-
-# Check if the hdf4 software is actually available.
-# Accept the directory only if needed .h, .a and tools are found
-# in the same place.  That way, they are more likely to be of the
-# same version.
-# 
-swpaths="$swpaths $swpaths_defaults"
-for sw in $swpaths; do
-    if [ -r $sw/include/hdf.h -a -r $sw/lib/libdf.a -a -r $sw/bin/hdp ]; then
-	SW_inc=$sw/include
-	SW_lib=$sw/lib
-	SW_bin=$sw/bin
-	SW_Location=$sw
-	break
-    fi
-done
-}
-
-# locate hdf5 software
-locate_hdf5()
-{
-# this default is the best guess of locating hdf5 software
-swpaths_defaults="/usr/ncsa /usr/sdt /usr/local"
-swpaths=
-
-case "$OSname" in
-    SunOS)
-        case "$OSrelease" in
-            5.7)
-               swpaths="/afs/ncsa/packages/hdf5/SunOS_5.7"
-               ;;
-	    *)
-            # use default
-	       ;;
-        esac
-        ;;
-    HP-UX)
-        case "$OSrelease" in
-	   B.11.00)
-	        swpaths="/afs/ncsa/packages/hdf5/HPUX_11.00"
-               ;;
-           *)
-           # use default
-              ;;
-        esac
-	;;
-    Linux)
-	swpaths="/afs/ncsa/packages/hdf5/Linux"
-	;;
-    FreeBSD)
-        swpaths="/afs/ncsa/packages/hdf5/FreeBSD"
-        ;;
-    OSF1)
-	swpaths="/afs/ncsa/packages/hdf5/OSF1_V4.0"
-	;;
-    *)
-	# just use the defaults
-	;;
-esac
-
-# Check if the hdf5 software is actually available.
-# Accept the directory only if needed .h, .a and tools are found
-# in the same place.  That way, they are more likely to be of the
-# same version.
-# 
-swpaths="$swpaths $swpaths_defaults"
-for sw in $swpaths; do
-    if [ -r $sw/include/hdf5.h -a -r $sw/lib/libhdf5.a -a -r $sw/bin/h5dump ]; then
-	SW_inc=$sw/include
-	SW_lib=$sw/lib
-	SW_bin=$sw/bin
-	SW_Location=$sw
-	break
-    fi
-done
-}
-
-# locate zlib software
-locate_zlib()
-{
-# this default is the best guess of locating zlib software
-swpaths_defaults="/usr /usr/local /usr/ncsa /usr/sdt"
-swpaths=
-
-
-# Check if the zlib software is actually available.
-# Accept the directory only if needed .h, .a and tools are found
-# in the same place.  That way, they are more likely to be of the
-# same version.
-# Don't know something specific to check the bin directory.  Maybe gzip?
-# Just make sure it exists.
-# 
-swpaths="$swpaths $swpaths_defaults"
-for sw in $swpaths; do
-    if [ -r $sw/include/zlib.h -a	\
-	    \( -r $sw/lib/libz.a -o -r $sw/lib/libz.so \) -a -d $cw/bin ]; then
-	SW_inc=$sw/include
-	SW_lib=$sw/lib
-	SW_bin=$sw/bin
-	SW_Location=$sw
-	break
-    fi
-done
-
-# if none found, try HDF4 software which contains a version of zlib.
-if [ x-$SW_Location = x- ]; then
-    locate_hdf4
-fi
-
-}
-
-# Main
-#
-# Options
-#
-if [ $# -lt 1 ]; then
-    USAGE
-    exit 1
-fi
-
-if [ "$1" = -h ]; then
-    USAGE
-    exit 0
-fi
-
-SW=$1
-shift
-
-# locations of the software seeked.
-SW_inc=			# include place
-SW_lib=			# library place
-SW_bin=			# binary place
-SW_Location=		# parent directory of all the above
-
-OSname=`uname -s`
-OSrelease=`uname -r`
-
-case $SW in
-hdf4|hdf)
-    locate_hdf4
-    ;;
-hdf5)
-    locate_hdf5
-    ;;
-zlib)
-    locate_zlib
-    ;;
-*)
-    echo "unknown software ($SW)"
-    USAGE
-    exit 1
-    ;;
-esac
-
-# show the results located, separated by commas.
-if [ -n "${SW_inc}" -a -n "${SW_lib}" -a -n "${SW_bin}" ]; then
-    echo ${SW_inc},${SW_lib},${SW_bin}
-    exit 0
-else
-    exit 1
-fi

bin/make_err

@@ -1,6 +1,7 @@
-#!/usr/bin/perl -w
+#!/usr/bin/env perl
 require 5.003;
 $indent=4;
+use warnings;
 
 #
 # Copyright by The HDF Group.
@@ -10,7 +11,7 @@ $indent=4;
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #
@@ -37,7 +38,7 @@ sub print_copyright ($) {
     print $fh " * This file is part of HDF5.  The full HDF5 copyright notice, including     *\n";
     print $fh " * terms governing use, modification, and redistribution, is contained in    *\n";
     print $fh " * the COPYING file, which can be found at the root of the source code       *\n";
-    print $fh " * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *\n";
+    print $fh " * distribution tree, or in https://www.hdfgroup.org/licenses.               *\n";
     print $fh " * If you do not have access to either file, you may request a copy from     *\n";
     print $fh " * help\@hdfgroup.org.                                                        *\n";
     print $fh " * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */\n";
@@ -63,8 +64,8 @@ sub print_startprotect ($$) {
     $file =~ s/(\w*)\.h/$1/;
 
     # Print the ifdef info
-    print $fh "\n#ifndef _${file}_H\n";
-    print $fh "#define _${file}_H\n";
+    print $fh "\n#ifndef ${file}_H\n";
+    print $fh "#define ${file}_H\n";
 }
 
 ##############################################################################

bin/make_overflow

@@ -1,6 +1,7 @@
-#!/usr/bin/perl -w
+#!/usr/bin/env perl
 require 5.003;
 use strict;
+use warnings;
 
 # Global settings
 
@@ -15,7 +16,7 @@ my @ctypes = ( () );
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #
@@ -66,7 +67,7 @@ sub print_copyright ($) {
     print $fh " * This file is part of HDF5.  The full HDF5 copyright notice, including     *\n";
     print $fh " * terms governing use, modification, and redistribution, is contained in    *\n";
     print $fh " * the COPYING file, which can be found at the root of the source code       *\n";
-    print $fh " * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *\n";
+    print $fh " * distribution tree, or in https://www.hdfgroup.org/licenses.               *\n";
     print $fh " * If you do not have access to either file, you may request a copy from     *\n";
     print $fh " * help\@hdfgroup.org.                                                        *\n";
     print $fh " * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */\n";
@@ -92,8 +93,8 @@ sub print_startprotect ($$) {
     $file =~ s/(\w*)\.h/$1/;
 
     # Print the ifdef info
-    print $fh "\n#ifndef _${file}_H\n";
-    print $fh "#define _${file}_H\n";
+    print $fh "\n#ifndef ${file}_H\n";
+    print $fh "#define ${file}_H\n";
 }
 
 ##############################################################################

bin/make_vers

@@ -1,11 +1,12 @@
-#!/usr/bin/perl -w
+#!/usr/bin/env perl
 require 5.003;
+use warnings;
 
 # Global settings
 # (The max_idx parameter is the only thing that needs to be changed when adding
 #       support for a new major release.  If support for a prior major release
 #       is added (like support for 1.4, etc), the min_sup_idx parameter will
-#       need to be decremented. - QAK)
+#       need to be decremented.)
 
 # Max. library "index" (0 = v1.0, 1 = 1.2, 2 = 1.4, 3 = 1.6, 4 = 1.8, 5 = 1.10, 6 = 1.12, etc)
 $max_idx = 6;
@@ -24,7 +25,7 @@ $indent = 2;
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #
@@ -51,7 +52,7 @@ sub print_copyright ($) {
     print $fh " * This file is part of HDF5.  The full HDF5 copyright notice, including     *\n";
     print $fh " * terms governing use, modification, and redistribution, is contained in    *\n";
     print $fh " * the COPYING file, which can be found at the root of the source code       *\n";
-    print $fh " * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *\n";
+    print $fh " * distribution tree, or in https://www.hdfgroup.org/licenses.               *\n";
     print $fh " * If you do not have access to either file, you may request a copy from     *\n";
     print $fh " * help\@hdfgroup.org.                                                        *\n";
     print $fh " * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */\n";
@@ -77,8 +78,8 @@ sub print_startprotect ($$) {
     $file =~ s/(\w*)\.h/$1/;
 
     # Print the ifdef info
-    print $fh "\n#ifndef _${file}_H\n";
-    print $fh "#define _${file}_H\n";
+    print $fh "\n#ifndef ${file}_H\n";
+    print $fh "#define ${file}_H\n";
 }
 
 ##############################################################################
@@ -89,7 +90,8 @@ sub print_checkoptions ($) {
     my $curr_idx;               # Current API version index
 
     # Print the option checking
-    print $fh "\n/* Issue error if contradicting macros have been defined. */\n";
+    print $fh "\n\n/* Issue error if contradicting macros have been defined. */\n";
+    print $fh "/* (Can't use an older (deprecated) API version if deprecated symbols have been disabled) */\n";
 
     # Print the #ifdef
     print $fh "#if (";
@@ -118,7 +120,30 @@ sub print_checkoptions ($) {
 ##############################################################################
 # Print "global" API version macro settings
 #
-sub print_globalapivers ($) {
+sub print_globalapidefvers ($) {
+    my $fh = shift;             # File handle for output file
+    my $curr_idx;               # Current API version index
+
+    # Print the descriptive comment
+    print $fh "\n\n/* If a particular default \"global\" version of the library's interfaces is\n";
+    print $fh " *      chosen, set the corresponding version macro for API symbols.\n";
+    print $fh " *\n";
+    print $fh " */\n";
+
+    for $curr_idx ($min_sup_idx .. ($max_idx - 1)) {
+        # Print API version ifdef
+        print $fh "\n#if defined(H5_USE_1", ($curr_idx * 2), "_API_DEFAULT) && !defined(H5_USE_1", ($curr_idx * 2), "_API)\n";
+        # Print API version definition
+        print $fh " " x $indent, "#define H5_USE_1", ($curr_idx * 2), "_API 1\n";
+        # Print API version endif
+        print $fh "#endif /* H5_USE_1", ($curr_idx * 2), "_API_DEFAULT && !H5_USE_1", ($curr_idx * 2), "_API */\n";
+    }
+}
+
+##############################################################################
+# Print "global" API symbol version macro settings
+#
+sub print_globalapisymbolvers ($) {
     my $fh = shift;             # File handle for output file
     my $curr_idx;               # Current API version index
 
@@ -130,15 +155,6 @@ sub print_globalapivers ($) {
     print $fh " *      API symbol, the individual API version macro takes priority.\n";
     print $fh " */\n";
 
-    for $curr_idx ($min_sup_idx .. ($max_idx - 1)) {
-        # Print API version ifdef
-        print $fh "#if defined(H5_USE_1", ($curr_idx * 2), "_API_DEFAULT) && !defined(H5_USE_1", ($curr_idx * 2), "_API)\n";
-        # Print API version definition
-        print $fh " " x $indent, "#define H5_USE_1", ($curr_idx * 2), "_API 1\n";
-        # Print API version endif
-        print $fh "#endif /* H5_USE_1", ($curr_idx * 2), "_API_DEFAULT && !H5_USE_1", ($curr_idx * 2), "_API */\n\n";
-    }
-
     # Loop over supported older library APIs and define the appropriate macros
     for $curr_idx ($min_sup_idx .. ($max_idx - 1)) {
         # Print API version ifdef
@@ -338,7 +354,18 @@ sub parse_line ($) {
             my $vers_idx;       # Index of version in array
 
             # Do some validation on the input
-            if(!( $_ =~ /v1[02468]/ || $_ =~ /v11[02468]/ )) {
+            # Note:  v111 is allowed because H5O functions were prematurely versioned
+            #        in HDF5 1.10.  Because users were affected by this, the versioning
+            #        was rescinded but the H5O version 2 functions were kept to be 
+            #        called directly.  Now that the version macros are added in 1.12,
+            #        along with a 3rd version of the H5O functions, the H5O function
+            #        version for default api=v110 should be version 1 to work correctly
+            #        with 1.10 applications that were using unversioned H5O functions,
+            #        and the H5O function version should be version 3 for default api=v112 
+            #        (the default api version for 1.12).  Allowing a v111 entry and 
+            #        incrementing its index 13 lines below allows a version 2 that is
+            #        never accessed via the H5O function macros.
+            if(!( $_ =~ /v1[02468]/ || $_ =~ /v11[02468]/ ||  $_ =~ /v111/ )) {
                 die "bad version information: $name";
             }
             if(exists($sym_versions{$_})) {
@@ -351,6 +378,9 @@ sub parse_line ($) {
 #print "parse_line: _=$_\n";
             # Get the index of the version
             ($vers_idx) = ($_ =~ /v1(\d+)/);
+            if($vers_idx == 11) {
+                $vers_idx++;
+            }
             $vers_idx /= 2;
 #print "parse_line: vers_idx='$vers_idx'\n";
             push(@vers_nums, $vers_idx);
@@ -443,8 +473,9 @@ sub create_public ($) {
     print_copyright(*HEADER);
     print_warning(*HEADER);
     print_startprotect(*HEADER, $file);
+    print_globalapidefvers(*HEADER);
     print_checkoptions(*HEADER);
-    print_globalapivers(*HEADER);
+    print_globalapisymbolvers(*HEADER);
     print_defaultapivers(*HEADER);
     print_endprotect(*HEADER, $file);
 

bin/missing

@@ -0,0 +1,215 @@
+#! /bin/sh
+# Common wrapper for a few potentially missing GNU programs.
+
+scriptversion=2013-10-28.13; # UTC
+
+# Copyright (C) 1996-2014 Free Software Foundation, Inc.
+# Originally written by Fran,cois Pinard <pinard@iro.umontreal.ca>, 1996.
+
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation; either version 2, or (at your option)
+# any later version.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <http://www.gnu.org/licenses/>.
+
+# As a special exception to the GNU General Public License, if you
+# distribute this file as part of a program that contains a
+# configuration script generated by Autoconf, you may include it under
+# the same distribution terms that you use for the rest of that program.
+
+if test $# -eq 0; then
+  echo 1>&2 "Try '$0 --help' for more information"
+  exit 1
+fi
+
+case $1 in
+
+  --is-lightweight)
+    # Used by our autoconf macros to check whether the available missing
+    # script is modern enough.
+    exit 0
+    ;;
+
+  --run)
+    # Back-compat with the calling convention used by older automake.
+    shift
+    ;;
+
+  -h|--h|--he|--hel|--help)
+    echo "\
+$0 [OPTION]... PROGRAM [ARGUMENT]...
+
+Run 'PROGRAM [ARGUMENT]...', returning a proper advice when this fails due
+to PROGRAM being missing or too old.
+
+Options:
+  -h, --help      display this help and exit
+  -v, --version   output version information and exit
+
+Supported PROGRAM values:
+  aclocal   autoconf  autoheader   autom4te  automake  makeinfo
+  bison     yacc      flex         lex       help2man
+
+Version suffixes to PROGRAM as well as the prefixes 'gnu-', 'gnu', and
+'g' are ignored when checking the name.
+
+Send bug reports to <bug-automake@gnu.org>."
+    exit $?
+    ;;
+
+  -v|--v|--ve|--ver|--vers|--versi|--versio|--version)
+    echo "missing $scriptversion (GNU Automake)"
+    exit $?
+    ;;
+
+  -*)
+    echo 1>&2 "$0: unknown '$1' option"
+    echo 1>&2 "Try '$0 --help' for more information"
+    exit 1
+    ;;
+
+esac
+
+# Run the given program, remember its exit status.
+"$@"; st=$?
+
+# If it succeeded, we are done.
+test $st -eq 0 && exit 0
+
+# Also exit now if we it failed (or wasn't found), and '--version' was
+# passed; such an option is passed most likely to detect whether the
+# program is present and works.
+case $2 in --version|--help) exit $st;; esac
+
+# Exit code 63 means version mismatch.  This often happens when the user
+# tries to use an ancient version of a tool on a file that requires a
+# minimum version.
+if test $st -eq 63; then
+  msg="probably too old"
+elif test $st -eq 127; then
+  # Program was missing.
+  msg="missing on your system"
+else
+  # Program was found and executed, but failed.  Give up.
+  exit $st
+fi
+
+perl_URL=http://www.perl.org/
+flex_URL=http://flex.sourceforge.net/
+gnu_software_URL=http://www.gnu.org/software
+
+program_details ()
+{
+  case $1 in
+    aclocal|automake)
+      echo "The '$1' program is part of the GNU Automake package:"
+      echo "<$gnu_software_URL/automake>"
+      echo "It also requires GNU Autoconf, GNU m4 and Perl in order to run:"
+      echo "<$gnu_software_URL/autoconf>"
+      echo "<$gnu_software_URL/m4/>"
+      echo "<$perl_URL>"
+      ;;
+    autoconf|autom4te|autoheader)
+      echo "The '$1' program is part of the GNU Autoconf package:"
+      echo "<$gnu_software_URL/autoconf/>"
+      echo "It also requires GNU m4 and Perl in order to run:"
+      echo "<$gnu_software_URL/m4/>"
+      echo "<$perl_URL>"
+      ;;
+  esac
+}
+
+give_advice ()
+{
+  # Normalize program name to check for.
+  normalized_program=`echo "$1" | sed '
+    s/^gnu-//; t
+    s/^gnu//; t
+    s/^g//; t'`
+
+  printf '%s\n' "'$1' is $msg."
+
+  configure_deps="'configure.ac' or m4 files included by 'configure.ac'"
+  case $normalized_program in
+    autoconf*)
+      echo "You should only need it if you modified 'configure.ac',"
+      echo "or m4 files included by it."
+      program_details 'autoconf'
+      ;;
+    autoheader*)
+      echo "You should only need it if you modified 'acconfig.h' or"
+      echo "$configure_deps."
+      program_details 'autoheader'
+      ;;
+    automake*)
+      echo "You should only need it if you modified 'Makefile.am' or"
+      echo "$configure_deps."
+      program_details 'automake'
+      ;;
+    aclocal*)
+      echo "You should only need it if you modified 'acinclude.m4' or"
+      echo "$configure_deps."
+      program_details 'aclocal'
+      ;;
+   autom4te*)
+      echo "You might have modified some maintainer files that require"
+      echo "the 'autom4te' program to be rebuilt."
+      program_details 'autom4te'
+      ;;
+    bison*|yacc*)
+      echo "You should only need it if you modified a '.y' file."
+      echo "You may want to install the GNU Bison package:"
+      echo "<$gnu_software_URL/bison/>"
+      ;;
+    lex*|flex*)
+      echo "You should only need it if you modified a '.l' file."
+      echo "You may want to install the Fast Lexical Analyzer package:"
+      echo "<$flex_URL>"
+      ;;
+    help2man*)
+      echo "You should only need it if you modified a dependency" \
+           "of a man page."
+      echo "You may want to install the GNU Help2man package:"
+      echo "<$gnu_software_URL/help2man/>"
+    ;;
+    makeinfo*)
+      echo "You should only need it if you modified a '.texi' file, or"
+      echo "any other file indirectly affecting the aspect of the manual."
+      echo "You might want to install the Texinfo package:"
+      echo "<$gnu_software_URL/texinfo/>"
+      echo "The spurious makeinfo call might also be the consequence of"
+      echo "using a buggy 'make' (AIX, DU, IRIX), in which case you might"
+      echo "want to install GNU make:"
+      echo "<$gnu_software_URL/make/>"
+      ;;
+    *)
+      echo "You might have modified some files without having the proper"
+      echo "tools for further handling them.  Check the 'README' file, it"
+      echo "often tells you about the needed prerequisites for installing"
+      echo "this package.  You may also peek at any GNU archive site, in"
+      echo "case some other package contains this missing '$1' program."
+      ;;
+  esac
+}
+
+give_advice "$1" | sed -e '1s/^/WARNING: /' \
+                       -e '2,$s/^/         /' >&2
+
+# Propagate the correct exit status (expected to be 127 for a program
+# not found, 63 for a program that failed due to version mismatch).
+exit $st
+
+# Local variables:
+# eval: (add-hook 'write-file-hooks 'time-stamp)
+# time-stamp-start: "scriptversion="
+# time-stamp-format: "%:y-%02m-%02d.%02H"
+# time-stamp-time-zone: "UTC"
+# time-stamp-end: "; # UTC"
+# End:

bin/mkdirs

@@ -7,7 +7,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #

bin/newer

@@ -7,7 +7,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #
@@ -19,7 +19,7 @@
 # Created Date: 2005/07/06
 # Modification:
 #    Albert Cheng 2005/8/30
-#    Changed from two arguments to mulitple arguments.
+#    Changed from two arguments to multiple arguments.
 
 if test $# -lt 2; then
     exit 1

bin/output_filter.sh

@@ -4,7 +4,7 @@
 ## This file is part of HDF5.  The full HDF5 copyright notice, including
 ## terms governing use, modification, and redistribution, is contained in
 ## the COPYING file, which can be found at the root of the source code
-## distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+## distribution tree, or in https://www.hdfgroup.org/licenses.
 ## If you do not have access to either file, you may request a copy from
 ## help@hdfgroup.org.
 

bin/pkgscrpts/h5rmflags

@@ -7,7 +7,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #

bin/pkgscrpts/makeHDF5BinaryTarfiles.pl

@@ -8,7 +8,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #

bin/release

@@ -7,30 +7,12 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #
 
 # Make a release of hdf5.
-#
-# Programmer: Robb Matzke
-# Creation date: on or before 1998-01-29.
-#
-# Modifications
-#   Robb Matzke, 1999-07-16
-#   The SunOS 5.6 sed *must* have slashes as delimiters. I changed things like
-#   `sed s+/CVS++' to `sed 's/\/CVS//'
-#
-#   Albert Cheng, 1999-10-26
-#   Moved the MANIFEST checking to a separate command file so that
-#   it can be invoked individually.
-#
-#   Albert Cheng, 2004-08-14
-#   Added the --private option.
-#
-#   James Laird, 2005-09-07
-#   Added the md5 method.
 
 # Function definitions
 #
@@ -38,37 +20,36 @@
 USAGE()
 {
 cat << EOF
-Usage: $0 -d <dir> [--docver BRANCHNAME] [-h] [--nocheck] [--private] <methods> ...
-   -d DIR	The name of the directory where the releas(es) should be
+Usage: $0 -d <dir> [--docver BRANCHNAME] [-h] [--private] <methods> ...
+   -d DIR       The name of the directory where the release(s) should be
                 placed.
    --docver BRANCHNAME  This is added for 1.8 and beyond to get the correct
                         version of documentation files from the hdf5docs
                         repository.  BRANCHNAME for v1.8 should be hdf5_1_8.
    -h           print the help page.
-   --nocheck	Ignore errors in MANIFEST file.
-   --private	Make a private release with today's date in version information.
-         
+   --private    Make a private release with today's date in version information.
+
 This must be run at the top level of the source directory.
 The other command-line options are the names of the programs to use
 for compressing the resulting tar archive (if none are given then
 "tar" is assumed):
 
-    tar		-- use tar and don't do any compressing.
-    gzip	-- use gzip with "-9" and append ".gz" to the output name.
+    tar         -- use tar and don't do any compressing.
+    gzip        -- use gzip with "-9" and append ".gz" to the output name.
     bzip2       -- use bzip2 with "-9" and append ".bz2" to the output name.
-    zip		-- convert all text files to DOS style and form a zip file for Windows use.
-    cmake-tgz   -- create a tar file using the gzip default level with a build-unix.sh 
+    zip         -- convert all text files to DOS style and form a zip file for Windows use.
+    cmake-tgz   -- create a tar file using the gzip default level with a build-unix.sh
                    command file and all other CMake files needed to build HDF5 source
                    using CMake on unix machines.
-    cmake-zip   -- convert all text files to DOS style and create a zip file inluding cmake
-                   scripts and .bat files to build HDF5 source using CMake on Windows. 
-    hpc-cmake-tgz  
-                -- create a tar file using the gzip default level with a build-unix.sh 
+    cmake-zip   -- convert all text files to DOS style and create a zip file including cmake
+                   scripts and .bat files to build HDF5 source using CMake on Windows.
+    hpc-cmake-tgz
+                -- create a tar file using the gzip default level with a build-unix.sh
                    command file and all other CMake files needed to build HDF5 source
                    using CMake on unix machines, with HDF5options.cmake files for serial
                    and parallel builds on machines requiring batch jobs to run tests.
                    The default is for parallel build, with serial only build by changing
-                   the HDF5options.cmake symlink to ser-HDF5options.cmake.  More 
+                   the HDF5options.cmake symlink to ser-HDF5options.cmake.  More
                    information is available in the README_HPC file.
     doc         -- produce the latest doc tree in addition to the archive.
 
@@ -100,11 +81,6 @@ EOF
 # Function name: tar2zip
 # Convert the release tarball to a Windows zipball.
 #
-# Programmer: Albert Cheng
-# Creation date: 2014-04-23
-#
-# Modifications
-#
 # Steps:
 # 1. untar the tarball in a temporary directory;
 #    Note: do this in a temporary directory to avoid changing
@@ -122,8 +98,8 @@ EOF
 tar2zip()
 {
     if [ $# -ne 3 ]; then
-	echo "usage: tar2zip <tarfilename> <zipfilename>"
-	return 1
+        echo "usage: tar2zip <tarfilename> <zipfilename>"
+        return 1
     fi
     ztmpdir=/tmp/ztmpdir$$
     mkdir -p $ztmpdir
@@ -135,23 +111,23 @@ tar2zip()
     (cd $ztmpdir; tar xf -) < $tarfile
     # sanity check
     if [ ! -d $ztmpdir/$version ]; then
-	echo "untar did not create $ztmpdir/$version source dir"
-	# cleanup
-	rm -rf $ztmpdir
-	return 1
+        echo "untar did not create $ztmpdir/$version source dir"
+        # cleanup
+        rm -rf $ztmpdir
+        return 1
     fi
     # step 2: convert text files
     # There maybe a simpler way to do this.
     # options used in unix2dos:
-    # -k   Keep the date stamp 
+    # -k   Keep the date stamp
     # -q   quiet mode
     # grep redirect output to /dev/null because -q or -s are not portable.
     find $ztmpdir/$version | \
-	while read inf; do \
-	    if file $inf | grep "$inf\: .*text" > /dev/null 2>&1 ; then \
-		unix2dos -q -k $inf; \
-	    fi\
-	done
+        while read inf; do \
+            if file $inf | grep "$inf\: .*text" > /dev/null 2>&1 ; then \
+                unix2dos -q -k $inf; \
+            fi\
+        done
     # step 3: make zipball
     # -9 maximum compression
     # -y Store symbolic links as such in the zip archive
@@ -167,24 +143,19 @@ tar2zip()
 # Function name: tar2cmakezip
 # Convert the release tarball to a Windows zipball with files to run CMake build.
 #
-# Programmer: Larry Knox
-# Creation date: 2017-02-20
-#
-# Modifications
-#
 # Steps:
 # 1. untar the tarball in a temporary directory;
 #    Note: do this in a temporary directory to avoid changing
 #    the original source directory which may be around.
 # 2. add build-unix.sh script.
-# 3. add SZIP.tar.gz, ZLib.tar.gz and cmake files to top level directory.
+# 3. add LIBAEC.tar.gz, ZLib.tar.gz and cmake files to top level directory.
 # 4. create gzipped tar file with these contents:
 #        build-unix.sh          script
 #        hdf5-<version>         source code directory extracted from tar file
 #        CTestScript.cmake      cmake file copied from <hdf5 source code>/config/cmake/scripts
 #        HDF5config.cmake       cmake file copied from <hdf5 source code>/config/cmake/scripts
 #        HDF5options.cmake      cmake file copied from <hdf5 source code>/config/cmake/scripts
-#        SZip.tar.gz            copied from /mnt/scr1/pre-release/hdf5/CMake
+#        LIBAEC.tar.gz          copied from /mnt/scr1/pre-release/hdf5/CMake
 #        ZLib.tar.gz            copied from /mnt/scr1/pre-release/hdf5/CMake
 
 
@@ -197,13 +168,13 @@ tar2zip()
 #
  # need function to create another temporary directory, extract the
             # $tmpdir/$HDF5_VERS.tar into it, create build-VS*.bat files,
-            # add CTestScript.cmake, HDF5config.cmake, SZIP.tar.gz
+            # add CTestScript.cmake, HDF5config.cmake, LIBAEC.tar.gz
             # ZLib.tar.gz, HDF5 examples, and then zip it.
 tar2cmakezip()
 {
     if [ $# -ne 3 ]; then
-	echo "usage: tar2cmakezip <tarfilename> <zipfilename>"
-	return 1
+        echo "usage: tar2cmakezip <tarfilename> <zipfilename>"
+        return 1
     fi
     cmziptmpdir=/tmp/cmziptmpdir$$
     cmziptmpsubdir=$cmziptmpdir/CMake-$HDF5_VERS
@@ -216,10 +187,10 @@ tar2cmakezip()
     (cd $cmziptmpsubdir; tar xf -) < $tarfile
     # sanity check
     if [ ! -d $cmziptmpsubdir/$version ]; then
-	echo "untar did not create $cmziptmpsubdir/$version source dir"
-	# cleanup
-	rm -rf $cmziptmpdir
-	return 1
+        echo "untar did not create $cmziptmpsubdir/$version source dir"
+        # cleanup
+        rm -rf $cmziptmpdir
+        return 1
     fi
 
     # step 2: add batch file for building CMake on window
@@ -229,11 +200,14 @@ tar2cmakezip()
     (cd $cmziptmpsubdir; echo "ctest -S HDF5config.cmake,BUILD_GENERATOR=VS201564 -C Release -V -O hdf5.log" > build-VS2015-64.bat; chmod 755 build-VS2015-64.bat)
     (cd $cmziptmpsubdir; echo "ctest -S HDF5config.cmake,BUILD_GENERATOR=VS2017 -C Release -V -O hdf5.log" > build-VS2017-32.bat; chmod 755 build-VS2017-32.bat)
     (cd $cmziptmpsubdir; echo "ctest -S HDF5config.cmake,BUILD_GENERATOR=VS201764 -C Release -V -O hdf5.log" > build-VS2017-64.bat; chmod 755 build-VS2017-64.bat)
+    (cd $cmziptmpsubdir; echo "ctest -S HDF5config.cmake,BUILD_GENERATOR=VS2019 -C Release -V -O hdf5.log" > build-VS2019-32.bat; chmod 755 build-VS2019-32.bat)
+    (cd $cmziptmpsubdir; echo "ctest -S HDF5config.cmake,BUILD_GENERATOR=VS201964 -C Release -V -O hdf5.log" > build-VS2019-64.bat; chmod 755 build-VS2019-64.bat)
 
-    # step 3: add SZIP.tar.gz, ZLib.tar.gz and cmake files
-    cp /mnt/scr1/pre-release/hdf5/CMake/SZip.tar.gz $cmziptmpsubdir
+    # step 3: add LIBAEC.tar.gz, ZLib.tar.gz and cmake files
+    cp /mnt/scr1/pre-release/hdf5/CMake/LIBAEC.tar.gz $cmziptmpsubdir
     cp /mnt/scr1/pre-release/hdf5/CMake/ZLib.tar.gz $cmziptmpsubdir
-    cp /mnt/scr1/pre-release/hdf5/CMake/HDF5Examples-1.12.4-Source.zip $cmziptmpsubdir
+    cp /mnt/scr1/pre-release/hdf5/CMake/HDF5Examples-1.12.9-Source.zip $cmziptmpsubdir
+    cp /mnt/scr1/pre-release/hdf5/CMake/hdf5_plugins-1_12_2.zip $cmziptmpsubdir
     cp $cmziptmpsubdir/$version/config/cmake/scripts/CTestScript.cmake $cmziptmpsubdir
     cp $cmziptmpsubdir/$version/config/cmake/scripts/HDF5config.cmake $cmziptmpsubdir
     cp $cmziptmpsubdir/$version/config/cmake/scripts/HDF5options.cmake $cmziptmpsubdir
@@ -241,15 +215,15 @@ tar2cmakezip()
     # step 4: convert text files
     # There maybe a simpler way to do this.
     # options used in unix2dos:
-    # -k   Keep the date stamp 
+    # -k   Keep the date stamp
     # -q   quiet mode
     # grep redirect output to /dev/null because -q or -s are not portable.
     find $cmziptmpsubdir/$version | \
-	while read inf; do \
-	    if file $inf | grep "$inf\: .*text" > /dev/null 2>&1 ; then \
-		unix2dos -q -k $inf; \
-	    fi\
-	done
+        while read inf; do \
+            if file $inf | grep "$inf\: .*text" > /dev/null 2>&1 ; then \
+                unix2dos -q -k $inf; \
+            fi\
+        done
 
     # step 3: make zipball
     # -9 maximum compression
@@ -266,24 +240,20 @@ tar2cmakezip()
 # Function name: tar2cmaketgz
 # Convert the release tarball to a gzipped tar file with files to run CMake build.
 #
-# Programmer: Larry Knox
-# Creation date: 2017-02-20
-#
-# Modifications
 #
 # Steps:
 # 1. untar the tarball in a temporary directory;
 #    Note: do this in a temporary directory to avoid changing
 #    the original source directory which may be around.
 # 2. add build-unix.sh script.
-# 3. add SZIP.tar.gz, ZLib.tar.gz and cmake files to top level directory.
+# 3. add LIBAEC.tar.gz, ZLib.tar.gz and cmake files to top level directory.
 # 4. create gzipped tar file with these contents:
 #        build-unix.sh          script
 #        hdf5-<version>         source code directory extracted from tar file
 #        CTestScript.cmake      cmake file copied from <hdf5 source code>/config/cmake/scripts
 #        HDF5config.cmake       cmake file copied from <hdf5 source code>/config/cmake/scripts
 #        HDF5options.cmake      cmake file copied from <hdf5 source code>/config/cmake/scripts
-#        SZip.tar.gz            copied from /mnt/scr1/pre-release/hdf5/CMake
+#        LIBAEC.tar.gz          copied from /mnt/scr1/pre-release/hdf5/CMake
 #        ZLib.tar.gz            copied from /mnt/scr1/pre-release/hdf5/CMake
 
 
@@ -296,13 +266,13 @@ tar2cmakezip()
 #
  # need function to create another temporary directory, extract the
             # $tmpdir/$HDF5_VERS.tar into it, create build-unix.sh,
-            # add CTestScript.cmake, HDF5config.cmake, SZIP.tar.gz
+            # add CTestScript.cmake, HDF5config.cmake, LIBAEC.tar.gz
             # ZLib.tar.gz, HDF5 examples, and then tar.gz it.
 tar2cmaketgz()
 {
     if [ $# -ne 3 ]; then
-	echo "usage: tar2cmaketgz <tarfilename> <tgzfilename>"
-	return 1
+        echo "usage: tar2cmaketgz <tarfilename> <tgzfilename>"
+        return 1
     fi
     cmgztmpdir=/tmp/cmgztmpdir$$
     cmgztmpsubdir=$cmgztmpdir/CMake-$HDF5_VERS
@@ -315,25 +285,26 @@ tar2cmaketgz()
     (cd $cmgztmpsubdir; tar xf -) < $tarfile
     # sanity check
     if [ ! -d $cmgztmpsubdir/$version ]; then
-	echo "untar did not create $cmgztmpsubdir/$version source dir"
-	# cleanup
-	rm -rf $cmgztmpdir
-	return 1
+        echo "untar did not create $cmgztmpsubdir/$version source dir"
+        # cleanup
+        rm -rf $cmgztmpdir
+        return 1
     fi
 
 
     # step 2: add build-unix.sh script
     (cd $cmgztmpsubdir; echo "ctest -S HDF5config.cmake,BUILD_GENERATOR=Unix -C Release -V -O hdf5.log" > build-unix.sh; chmod 755 build-unix.sh)
 
-    # step 3: add SZIP.tar.gz, ZLib.tar.gz and cmake files
-    cp /mnt/scr1/pre-release/hdf5/CMake/SZip.tar.gz $cmgztmpsubdir
+    # step 3: add LIBAEC.tar.gz, ZLib.tar.gz and cmake files
+    cp /mnt/scr1/pre-release/hdf5/CMake/LIBAEC.tar.gz $cmgztmpsubdir
     cp /mnt/scr1/pre-release/hdf5/CMake/ZLib.tar.gz $cmgztmpsubdir
-    cp /mnt/scr1/pre-release/hdf5/CMake/HDF5Examples-1.12.4-Source.tar.gz $cmgztmpsubdir
+    cp /mnt/scr1/pre-release/hdf5/CMake/HDF5Examples-1.12.9-Source.tar.gz $cmgztmpsubdir
+    cp /mnt/scr1/pre-release/hdf5/CMake/hdf5_plugins-1_12_2.tar.gz $cmgztmpsubdir
     cp $cmgztmpsubdir/$version/config/cmake/scripts/CTestScript.cmake $cmgztmpsubdir
     cp $cmgztmpsubdir/$version/config/cmake/scripts/HDF5config.cmake $cmgztmpsubdir
     cp $cmgztmpsubdir/$version/config/cmake/scripts/HDF5options.cmake $cmgztmpsubdir
-    tar czf $DEST/CMake-$HDF5_VERS.tar.gz -C $cmgztmpdir . || exit 1 
-                 
+    tar czf $DEST/CMake-$HDF5_VERS.tar.gz -C $cmgztmpdir . || exit 1
+
     # cleanup
     rm -rf $cmgztmpdir
 }
@@ -343,24 +314,19 @@ tar2cmaketgz()
 # and HDF5options.cmake files for parallel or serial only builds where build
 # tests are run on compute nodes using batch scripts.
 #
-# Programmer: Larry Knox
-# Creation date: 2019-01-28
-#
-# Modifications
-#
 # Steps:
 # 1. untar the tarball in a temporary directory;
 #    Note: do this in a temporary directory to avoid changing
 #    the original source directory which may be around.
 # 2. add build-unix.sh script.
-# 3. add SZIP.tar.gz, ZLib.tar.gz and cmake files to top level directory.
+# 3. add LIBAEC.tar.gz, ZLib.tar.gz and cmake files to top level directory.
 # 4. create gzipped tar file with these contents:
 #        build-unix.sh          script
 #        hdf5-<version>         source code directory extracted from tar file
 #        CTestScript.cmake      cmake file copied from <hdf5 source code>/config/cmake/scripts
 #        HDF5config.cmake       cmake file copied from <hdf5 source code>/config/cmake/scripts
 #        HDF5options.cmake      cmake file copied from <hdf5 source code>/config/cmake/scripts
-#        SZip.tar.gz            copied from /mnt/scr1/pre-release/hdf5/CMake
+#        LIBAEC.tar.gz          copied from /mnt/scr1/pre-release/hdf5/CMake
 #        ZLib.tar.gz            copied from /mnt/scr1/pre-release/hdf5/CMake
 #
 # 5. For HPC-CMake tgz file the following are also needed in the top-level directory:
@@ -379,13 +345,13 @@ tar2cmaketgz()
 #
  # need function to create another temporary directory, extract the
             # $tmpdir/$HDF5_VERS.tar into it, create build-unix.sh,
-            # add CTestScript.cmake, HDF5config.cmake, SZIP.tar.gz
+            # add CTestScript.cmake, HDF5config.cmake, LIBAEC.tar.gz
             # ZLib.tar.gz, HDF5 examples, and then tar.gz it.
 tar2hpccmaketgz()
 {
     if [ $# -ne 3 ]; then
-	echo "usage: tar2hpccmaketgz <tarfilename> <tgzfilename>"
-	return 1
+        echo "usage: tar2hpccmaketgz <tarfilename> <tgzfilename>"
+        return 1
     fi
     cmgztmpdir=/tmp/cmgztmpdir$$
     cmgztmpsubdir=$cmgztmpdir/HPC-CMake-$HDF5_VERS
@@ -398,20 +364,21 @@ tar2hpccmaketgz()
     (cd $cmgztmpsubdir; tar xf -) < $tarfile
     # sanity check
     if [ ! -d $cmgztmpsubdir/$version ]; then
-	echo "untar did not create $cmgztmpsubdir/$version source dir"
-	# cleanup
-	rm -rf $cmgztmpdir
-	return 1
+        echo "untar did not create $cmgztmpsubdir/$version source dir"
+        # cleanup
+        rm -rf $cmgztmpdir
+        return 1
     fi
 
 
     # step 2: add build-unix.sh script
     (cd $cmgztmpsubdir; echo "ctest -S HDF5config.cmake,BUILD_GENERATOR=Unix -C Release -V -O hdf5.log" > build-unix.sh; chmod 755 build-unix.sh)
 
-    # step 3: add SZIP.tar.gz, ZLib.tar.gz and cmake files
-    cp /mnt/scr1/pre-release/hdf5/CMake/SZip.tar.gz $cmgztmpsubdir
+    # step 3: add LIBAEC.tar.gz, ZLib.tar.gz and cmake files
+    cp /mnt/scr1/pre-release/hdf5/CMake/LIBAEC.tar.gz $cmgztmpsubdir
     cp /mnt/scr1/pre-release/hdf5/CMake/ZLib.tar.gz $cmgztmpsubdir
-    cp /mnt/scr1/pre-release/hdf5/CMake/HDF5Examples-1.12.4-Source.tar.gz $cmgztmpsubdir
+    cp /mnt/scr1/pre-release/hdf5/CMake/HDF5Examples-1.12.9-Source.tar.gz $cmgztmpsubdir
+    cp /mnt/scr1/pre-release/hdf5/CMake/hdf5_plugins-1_12_2.tar.gz $cmgztmpsubdir
     cp $cmgztmpsubdir/$version/config/cmake/scripts/CTestScript.cmake $cmgztmpsubdir
     cp $cmgztmpsubdir/$version/config/cmake/scripts/HDF5config.cmake $cmgztmpsubdir
 
@@ -419,8 +386,8 @@ tar2hpccmaketgz()
     cp $cmgztmpsubdir/$version/config/cmake/scripts/HPC/ser-HDF5options.cmake $cmgztmpsubdir
     cp $cmgztmpsubdir/$version/config/cmake/scripts/HPC/par-HDF5options.cmake $cmgztmpsubdir
     (cd $cmgztmpsubdir; ln -s par-HDF5options.cmake HDF5options.cmake)
-    tar czf $DEST/HPC-CMake-$HDF5_VERS.tar.gz -C $cmgztmpdir . || exit 1 
-                 
+    tar czf $DEST/HPC-CMake-$HDF5_VERS.tar.gz -C $cmgztmpdir . || exit 1
+
     # cleanup
     rm -rf $cmgztmpdir
 }
@@ -438,11 +405,10 @@ VERS=`perl bin/h5vers`
 VERS_OLD=
 test "$VERS" || exit 1
 verbose=yes
-check=yes
 release_date=`date +%F`
 today=`date +%Y%m%d`
 pmode='no'
-tmpdir="../#release_tmp.$$"	# tmp work directory
+tmpdir="../#release_tmp.$$"     # tmp work directory
 DOC_URL=https://git@bitbucket.hdfgroup.org/scm/hdffv/hdf5doc.git
 CPPLUS_RM_NAME=cpplus_RM
 MAINT_MODE_ENABLED=""
@@ -459,11 +425,11 @@ fi
 RESTORE_VERSION()
 {
     if [ X-${VERS_OLD} != X- ]; then
-	echo restoring version information back to $VERS_OLD
-	rm -f config/lt_vers.am
-	cp $tmpdir/lt_vers.am config/lt_vers.am
-	bin/h5vers -s $VERS_OLD
-	VERS_OLD=
+        echo restoring version information back to $VERS_OLD
+        rm -f config/lt_vers.am
+        cp $tmpdir/lt_vers.am config/lt_vers.am
+        bin/h5vers -s $VERS_OLD
+        VERS_OLD=
     fi
 }
 
@@ -473,32 +439,29 @@ while [ -n "$1" ]; do
     arg=$1
     shift
     case "$arg" in
-	-d)
-	    DEST=$1
-	    shift
-	    ;;
-	--nocheck)
-	    check=no
-	    ;;
-	-h)
-	    USAGE
-	    exit 0
-	    ;;
-	--private)
-	    pmode=yes
-	    ;;
+        -d)
+            DEST=$1
+            shift
+            ;;
+        -h)
+            USAGE
+            exit 0
+            ;;
+        --private)
+            pmode=yes
+            ;;
         --docver)
             DOCVERSION=$1
             shift
             ;;
-	-*)
-	    echo "Unknown switch: $arg" 1>&2
-	    USAGE
-	    exit 1
-	    ;;
-	*)
-	    methods="$methods $arg"
-	    ;;
+        -*)
+            echo "Unknown switch: $arg" 1>&2
+            USAGE
+            exit 1
+            ;;
+        *)
+            methods="$methods $arg"
+            ;;
     esac
 done
 
@@ -507,7 +470,7 @@ if [ "X$methods" = "X" ]; then
     methods="tar"
 fi
 
-# Create the temporay work directory.
+# Create the temporary work directory.
 if mkdir $tmpdir; then
     echo "temporary work directory for release.  "\
          "Can be deleted after release completes." > $tmpdir/README
@@ -541,35 +504,17 @@ if [ ! -d $DEST ]; then
     exit 1
 fi
 
-# Check the validity of the MANIFEST file.
-bin/chkmanifest || fail=yes
-if [ "X$fail" = "Xyes" ]; then
-    if [ $check = yes ]; then
-        echo ""
-        echo "Note!  If you are running bin/release in a development branch"
-        echo "later than v 1.8 the MANIFEST check is expected to fail when"
-        echo "autogen.sh has not been run successfully. Either run autogen.sh " 
-        echo "with /usr/hdf/bin/AUTOTOOLS at the beginning of PATH or add the"
-        echo "--nocheck argument to the bin/release command."
-        exit 1
-    else
-	echo "Continuing anyway..."
-    fi
-fi
-
-# Create a manifest that contains only files for distribution.
-MANIFEST=$tmpdir/H5_MANIFEST
-grep '^\.' MANIFEST | grep -v _DO_NOT_DISTRIBUTE_ >$MANIFEST
-
-# Prepare the source tree for a release.
+# Create a symlink to the source so files in the tarball have the prefix
+# we want (gnu's --transform isn't portable)
 ln -s `pwd` $tmpdir/$HDF5_VERS || exit 1
+
 # Save a backup copy of Makefile if exists.
 test -f Makefile && mv Makefile $tmpdir/Makefile.x
 cp -p Makefile.dist Makefile
 
-# Update README.txt and release_docs/RELEASE.txt with release information in
+# Update README.md and release_docs/RELEASE.txt with release information in
 # line 1.
-for f in README.txt release_docs/RELEASE.txt; do
+for f in README.md release_docs/RELEASE.txt; do
     echo "HDF5 version $VERS released on $release_date" >$f.x
     sed -e 1d $f >>$f.x
     mv $f.x $f
@@ -577,79 +522,75 @@ for f in README.txt release_docs/RELEASE.txt; do
     chmod 644 $f
 done
 
-# trunk is different than branches.
+# develop is different than branches.
 if [ "${DOCVERSION}" ]; then
     DOC_URL="$DOC_URL -b ${DOCVERSION}"
 fi
 
 # Create the tar file
 test "$verbose" && echo "   Running tar..." 1>&2
-( \
-    cd $tmpdir; \
-    tar cf $HDF5_VERS.tar $HDF5_VERS/Makefile \
-	`sed 's/^\.\//hdf5-'$VERS'\//' $MANIFEST` || exit 1 \
-)
+(cd "$tmpdir" && exec tar -ch --exclude-vcs -f "$HDF5_VERS.tar" "./$HDF5_VERS" || exit 1 )
 
 # Compress
 MD5file=$HDF5_VERS.md5
 cp /dev/null $DEST/$MD5file
 for comp in $methods; do
     case $comp in
-	tar)
-	    cp -p $tmpdir/$HDF5_VERS.tar $DEST/$HDF5_VERS.tar
-	    (cd $DEST; md5sum $HDF5_VERS.tar >> $MD5file) 
-	    ;;
-	gzip)
-	    test "$verbose" && echo "   Running gzip..." 1>&2
-	    gzip -9 <$tmpdir/$HDF5_VERS.tar >$DEST/$HDF5_VERS.tar.gz
-	    (cd $DEST; md5sum $HDF5_VERS.tar.gz >> $MD5file) 
-	    ;;
+        tar)
+            cp -p $tmpdir/$HDF5_VERS.tar $DEST/$HDF5_VERS.tar
+            (cd $DEST; md5sum $HDF5_VERS.tar >> $MD5file)
+            ;;
+        gzip)
+            test "$verbose" && echo "   Running gzip..." 1>&2
+            gzip -9 <$tmpdir/$HDF5_VERS.tar >$DEST/$HDF5_VERS.tar.gz
+            (cd $DEST; md5sum $HDF5_VERS.tar.gz >> $MD5file)
+            ;;
         cmake-tgz)
-	    test "$verbose" && echo "   Creating CMake tar.gz file..." 1>&2
-	    tar2cmaketgz $HDF5_VERS $tmpdir/$HDF5_VERS.tar $DEST/CMake-$HDF5_VERS.tar.gz 1>&2
-	    (cd $DEST; md5sum CMake-$HDF5_VERS.tar.gz >> $MD5file) 
+            test "$verbose" && echo "   Creating CMake tar.gz file..." 1>&2
+            tar2cmaketgz $HDF5_VERS $tmpdir/$HDF5_VERS.tar $DEST/CMake-$HDF5_VERS.tar.gz 1>&2
+            (cd $DEST; md5sum CMake-$HDF5_VERS.tar.gz >> $MD5file)
             ;;
         hpc-cmake-tgz)
-	    test "$verbose" && echo "   Creating HPC-CMake tar.gz file..." 1>&2
-	    tar2hpccmaketgz $HDF5_VERS $tmpdir/$HDF5_VERS.tar $DEST/HPC-CMake-$HDF5_VERS.tar.gz 1>&2
-	    (cd $DEST; md5sum HPC-CMake-$HDF5_VERS.tar.gz >> $MD5file) 
+            test "$verbose" && echo "   Creating HPC-CMake tar.gz file..." 1>&2
+            tar2hpccmaketgz $HDF5_VERS $tmpdir/$HDF5_VERS.tar $DEST/HPC-CMake-$HDF5_VERS.tar.gz 1>&2
+            (cd $DEST; md5sum HPC-CMake-$HDF5_VERS.tar.gz >> $MD5file)
+            ;;
+        bzip2)
+            test "$verbose" && echo "   Running bzip2..." 1>&2
+            bzip2 -9 <$tmpdir/$HDF5_VERS.tar >$DEST/$HDF5_VERS.tar.bz2
+            (cd $DEST; md5sum $HDF5_VERS.tar.bz2 >> $MD5file)
+            ;;
+        zip)
+            test "$verbose" && echo "   Creating zip ball..." 1>&2
+            tar2zip $HDF5_VERS $tmpdir/$HDF5_VERS.tar $DEST/$HDF5_VERS.zip 1>&2
+            (cd $DEST; md5sum $HDF5_VERS.zip >> $MD5file)
             ;;
-	bzip2)
-	    test "$verbose" && echo "   Running bzip2..." 1>&2
-	    bzip2 -9 <$tmpdir/$HDF5_VERS.tar >$DEST/$HDF5_VERS.tar.bz2
-	    (cd $DEST; md5sum $HDF5_VERS.tar.bz2 >> $MD5file) 
-	    ;;
-	zip)
-	    test "$verbose" && echo "   Creating zip ball..." 1>&2
-	    tar2zip $HDF5_VERS $tmpdir/$HDF5_VERS.tar $DEST/$HDF5_VERS.zip 1>&2
-	    (cd $DEST; md5sum $HDF5_VERS.zip >> $MD5file) 
-	    ;;
         cmake-zip)
             test "$verbose" && echo "   Creating CMake-zip ball..." 1>&2
             tar2cmakezip $HDF5_VERS $tmpdir/$HDF5_VERS.tar $DEST/CMake-$HDF5_VERS.zip 1>&2
             (cd $DEST; md5sum CMake-$HDF5_VERS.zip >> $MD5file)
             ;;
-	doc)
+        doc)
             if [ "${DOCVERSION}" = "" ]; then
                 DOCVERSION=master
             fi
-	    test "$verbose" && echo "   Creating docs..." 1>&2
-	    # Check out docs from git repo
-	    (cd $tmpdir; git clone -q $DOC_URL ${DOCVERSION} > /dev/null) || exit 1
+            test "$verbose" && echo "   Creating docs..." 1>&2
+            # Check out docs from git repo
+            (cd $tmpdir; git clone -q $DOC_URL ${DOCVERSION} > /dev/null) || exit 1
             # Create doxygen C++ RM
-	    (cd c++/src && doxygen cpp_doc_config > /dev/null ) || exit 1
-	    # Replace version of C++ RM with just-created version
-	    rm -rf $tmpdir/${DOCVERSION}/html/$CPPLUS_RM_NAME || exit 1
-	    mv c++/src/$CPPLUS_RM_NAME $tmpdir/${DOCVERSION}/html/$CPPLUS_RM_NAME || exit 1
+            (cd c++/src && doxygen cpp_doc_config > /dev/null ) || exit 1
+            # Replace version of C++ RM with just-created version
+            rm -rf $tmpdir/${DOCVERSION}/html/$CPPLUS_RM_NAME || exit 1
+            mv c++/src/$CPPLUS_RM_NAME $tmpdir/${DOCVERSION}/html/$CPPLUS_RM_NAME || exit 1
             # Compress the docs and move them to the release area
-	    mv $tmpdir/${DOCVERSION} $tmpdir/${HDF5_VERS}_docs || exit 1
-	    (cd $tmpdir && tar cf ${HDF5_VERS}_docs.tar ${HDF5_VERS}_docs) || exit 1
-	    mv $tmpdir/${HDF5_VERS}_docs.tar $DEST || exit 1
-	    ;;
-	*)
-	    echo "***Error*** Unknown method $comp"
-	    exit 1
-	    ;;
+            mv $tmpdir/${DOCVERSION} $tmpdir/${HDF5_VERS}_docs || exit 1
+            (cd $tmpdir && tar cf ${HDF5_VERS}_docs.tar ${HDF5_VERS}_docs) || exit 1
+            mv $tmpdir/${HDF5_VERS}_docs.tar $DEST || exit 1
+            ;;
+        *)
+            echo "***Error*** Unknown method $comp"
+            exit 1
+            ;;
     esac
 done
 
@@ -675,4 +616,6 @@ fi
 # Remove temporary things
 rm -rf $tmpdir
 
+echo "DONE"
+
 exit 0

bin/restore.sh

@@ -6,7 +6,7 @@
 # This file is part of HDF5. The full HDF5 copyright notice, including     
 # terms governing use, modification, and redistribution, is contained in   
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #
@@ -48,6 +48,9 @@ rm -f bin/missing
 rm -f bin/test-driver
 rm -f bin/depcomp
 
+echo "Remove files generated by autoheader"
+rm -f src/H5config.h.in
+
 echo "Remove files generated by bin/make_err"
 rm -f src/H5Epubgen.h
 rm -f src/H5Einit.h

bin/runbkgprog

@@ -1,5 +1,6 @@
-#!/usr/bin/perl -w
+#!/usr/bin/env perl
 require 5.003;
+use warnings;
 $indent=4;
 
 #
@@ -10,7 +11,7 @@ $indent=4;
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #

bin/runtest

@@ -1,966 +0,0 @@
-#! /bin/sh
-#
-# Copyright by The HDF Group.
-# Copyright by the Board of Trustees of the University of Illinois.
-# All rights reserved.
-#
-# This file is part of HDF5.  The full HDF5 copyright notice, including
-# terms governing use, modification, and redistribution, is contained in
-# the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
-# If you do not have access to either file, you may request a copy from
-# help@hdfgroup.org.
-#
-
-# run the hdf5/bin/snapshot
-# Usage:
-#	runtest		run the test for the local host
-#	runtest <hostname>	run the test for <hostname>
-#	runtest -all		run the test for all predefined hosts
-#
-# Assumptions in knowing where to find the right scripts to execute.
-# 1. assume we are at the top level of the hdf5 source.  So, bin/* are
-#    where the script files are.
-# 2. after the cvs update is completed, we can go to the snapshot area
-#    hdf5 source tree and use the bin/* there.
-# 3. Cannot use the snapshot area scripts from the beginning because
-#    for one, the current directory is renamed as previous right after
-#    a snapshot release; and for another, some scripts may be changed
-#    by the cvs update while it is being used.
-
-# local setup
-DEBUGMODE=""
-test -n "$DEBUGMODE" && echo "******** DEBUGMODE is $DEBUGMODE ************"
-WHEREAMI='pwd'
-CMD=
-
-# the name of this program
-PROGNAME="bin/runtest $DEBUGMODE"
-
-# Setup
-HOSTNAME=`hostname | cut -f1 -d.`	# no domain part
-TODAY=`date +%m%d%a`
-WEEKDAY=`date +%a`
-H5VER=			# default to current CVS version
-H5VERSION=		# default to current CVS version
-n_test=0		# Number of tests ran
-n_pass=0		# Number of tests passed
-n_fail=0		# Number of tests failed
-n_skip=0		# Number of tests skipped
-
-# Default to do checkout (only once) and test, no release.
-# Will run test only if there is significant differences from previous version.
-# If srcdir is not used, don't launched multiple tests
-SNAPSHOT="${DEBUGMODE:+echo }bin/snapshot"
-SRCDIR="srcdir"
-# Default standard Snaptest commands
-SNAPCMD="$SRCDIR test clean"
-# Default Standard snaptest command options
-STANDARD_OPT=""
-ENABLE_PARALLEL="--enable-parallel"
-CONFIGNAME=$HOSTNAME	# Name used in the SNAPTESTCFG file
-
-# test host default as local host.
-TESTHOST=""
-
-#################################
-# Function definitions
-#################################
-
-# Print messages to stdout
-# Use this to show output heading to stdout
-PRINT()
-{
-    echo "$*"
-}
-
-# Show seconds since midnight.
-# This is used to calculate seconds elapsed
-SecOfDay()
-{
-    set `date '+%H %M %S'`
-    t_sec=`expr $1 \* 3600 + $2 \* 60 + $3`
-    echo $t_sec
-}
-
-# Calculated the elapsed time (in seconds) between the first
-# and second time.  If second time is smaller than the first,
-# we assume the clock has passed midnight and calculate appropriately.
-ElapsedTime()
-{
-    if [ $2 -lt $1 ]; then
-	t_sec=`expr 3600 \* 24 - $1 + $2`
-    else
-	t_sec=`expr $2 - $1`
-    fi
-    echo `expr $t_sec / 60`m `expr $t_sec % 60`s
-}
-
-# Report errors
-# $1--an error message to be printed
-REPORT_ERR()
-{
-    ERRMSG=$1
-    # print it with a banner shifted right a bit
-    PRINT "	*************************************"
-    PRINT "	`date`"
-    PRINT "	$ERRMSG"
-    PRINT "	*************************************"
-    # report it in the FAILED-LOG file too
-    PRINT "$ERRMSG" >> $FAILEDLOG
-}
-
-#
-# Report results of the last test done
-REPORT_RESULT()
-{
-    if [ $retcode -eq 0 ]; then
-	if [ $skiptest = yes ]; then
-	    n_skip=`expr $n_skip + 1`
-	    PRINT "SKIPPED ${HOSTNAME}: $TEST_TYPE" | tee -a $SKIPPEDLOG
-	else
-	    n_pass=`expr $n_pass + 1`
-	    PRINT "PASSED ${HOSTNAME}: $TEST_TYPE" | tee -a $PASSEDLOG
-	fi
-    else
-	# test failed.
-	n_fail=`expr $n_fail + 1`
-	REPORT_ERR "****FAILED ${HOSTNAME}: $TEST_TYPE****"
-    fi
-}
-
-# Print a blank line
-PRINT_BLANK()
-{
-    PRINT
-}
-
-# Print test trailer
-PRINT_TEST_TRAILER()
-{
-    PRINT "*** finished $TEST_TYPE tests for $HOSTNAME ***"
-    date; EndTime=`SecOfDay`
-    PRINT Total time = `ElapsedTime $StartTime $EndTime`
-    PRINT_BLANK
-}
-
-# Print trailer summary
-PRINT_TRAILER()
-{
-    PRINT "*** finished tests in $HOSTNAME ***"
-    date; TotalEndTime=`SecOfDay`
-    PRINT "${HOSTNAME}: Ran $n_test($n_pass/$n_fail/$n_skip) $runtest_type, Grand total test time = " \
-          "`ElapsedTime $TotalStartTime $TotalEndTime`" | tee -a $TIMELOG
-    PRINT_BLANK
-}
-
-# Figure out which remote command to use to reach a host.
-# Try ssh first, then rsh since fewer machines support rsh exec.
-# $1--hostname to reach.
-CHECK_RSH()
-{
-    # Figure out how to use ping command in this host.
-    # Some hosts use "ping host count", some use "ping -c count host".
-    # Test "ping -c 3 -w 5" since it has timeout feature.
-    # Test "ping -c ..." style before "ping host 3" because some machines
-    # that recognize -c treat 'ping localhost 3' as to ping host '3'.
-    if [ -z "$PING" ]; then
-	if ping -c 3 -w 5 localhost >/dev/null 2>&1; then
-	    PING='ping -c 3 -w 5'
-	    PINGCOUNT=
-	elif ping -c 3 localhost >/dev/null 2>&1; then
-	    PING='ping -c 3'
-	    PINGCOUNT=
-	elif ping localhost 3 >/dev/null 2>&1; then
-	    PING=ping
-	    PINGCOUNT=3
-	else	# don't know how to use ping.
-	    PING=no_ping
-	    PINGCOUNT=
-	fi
-    fi
-    #
-    host=$1
-    # Try remote command with host if it responds to ping.
-    # Still try it if we don't know how to do ping.
-    if [ no_ping = "$PING" ] || $PING $host $PINGCOUNT >/dev/null 2>&1; then
-	if ssh $host -n hostname >/dev/null 2>&1; then
-	    RSH=ssh
-	elif rsh $host -n hostname >/dev/null 2>&1; then
-	    RSH=rsh
-	else
-	    PRINT cannot remote command with $host
-	    RSH="NoRemoteCommand"
-	fi
-    else
-	RSH="NotReachable"
-    fi
-}
-
-
-# Wait for a file for at most number of minutes
-# $1--the file
-# $2--number of minutes
-# WAIT_STATUS set to:
-#	-1 if errors encountered
-#	0  if file found within time limit
-#	1  if file not found within time limit
-WAITFOR()
-{
-    wait_file=$1
-    nminutes=$2
-    if [ -z "$wait_file" -o ! "$nminutes" -ge 0 ]
-    then
-	PRINT "errors in argument of WAITFOR(): wait_file($1) or nminutes($2)"
-	WAIT_STATUS=-1
-	return
-    fi
-    while [ ! -f $wait_file ]; do
-	if [ $nminutes -gt 0 ]; then
-	    PRINT "Wait For $wait_file to appear"
-	    sleep 60			#sleep 1 minute
-	else
-	    WAIT_STATUS=1
-	    return
-	fi
-	nminutes=`expr $nminutes - 1`
-    done
-    WAIT_STATUS=0
-    return
-}
-
-
-# Wait till a file disappears for at most number of minutes.
-# Useful to wait till a lock is removed by another process.
-# $1--the file
-# $2--number of minutes
-# WAIT_STATUS set to:
-#	-1 if errors encountered
-#	0  if file disappears within time limit
-#	1  if file has not disappeared within time limit
-WAITTILL()
-{
-    wait_file=$1
-    nminutes=$2
-    if [ -z "$wait_file" -o ! "$nminutes" -ge 0 ]
-    then
-	PRINT "errors in argument of WAITTILL(): wait_file($1) or nminutes($2)"
-	WAIT_STATUS=-1
-	return
-    fi
-    while [ -f $wait_file ]; do
-	if [ $nminutes -gt 0 ]; then
-	    PRINT "Wait till $wait_file has disappeared"
-	    sleep 60			#sleep 1 minute
-	else
-	    WAIT_STATUS=1
-	    return
-	fi
-	nminutes=`expr $nminutes - 1`
-    done
-    WAIT_STATUS=0
-    return
-}
-
-
-# Run one snapshot test
-# $*--Types of test being run
-RUNSNAPTEST()
-{
-    SNAPCMD_OPT="$STANDARD_OPT"		# snapshot test option
-    SRCDIRNAME=${HOSTNAME}
-    # restore CC, PATH in case they were changed in the last test.
-    CC="$CC_SAVED"
-    PATH=$PATH_SAVED
-    export PATH			# DEC OSF1 needs to export PATH explicitly
-    TEST_TYPE=$*
-    retcode=0
-    skiptest=no
-    date
-    PRINT "*** starting $TEST_TYPE tests in $HOSTNAME ***"
-    PRINT "Uname -a: `uname -a`"
-
-    # Parse the test type and set options accordingly.
-    # See comments of SNAPTEST_CONFIG_PARSE().
-    while [ $# -gt 0 ]; do
-	case $1 in
-	    -n32) # want -n32 option
-		SRCDIRNAME=${SRCDIRNAME}-n32
-		CC="cc -n32"
-		export CC
-		;;
-	    -64) # want -64 option
-		SRCDIRNAME=${SRCDIRNAME}-64
-		CC="cc -64"
-		export CC
-		;;
-	    parallel) # want parallel test
-		SNAPCMD_OPT="$SNAPCMD_OPT $ENABLE_PARALLEL"
-		SRCDIRNAME=${SRCDIRNAME}-pp
-		;;
-	    standard) # standard test
-		;;
-	    --*)
-		# option for configure
-		SNAPCMD_OPT="$SNAPCMD_OPT $1"
-		;;
-	    op-configure)
-		# option for configure
-		SNAPCMD_OPT="$SNAPCMD_OPT $1 $2"
-		shift
-		;;
-	    op-snapshot)
-		# option for snapshot
-		shift
-		SNAPCMD_OPT="$SNAPCMD_OPT $1"
-		;;
-	    setenv)
-		# pass them along to snapshot set environment variable
-		shift
-		SNAPCMD_OPT="$SNAPCMD_OPT setenv $1 $2"
-		shift
-		;;
-	    setenvN)
-		# set environment variable with $1 values
-		# e.g., setenvN 3 x a b c is same as setenv x="a b c".
-		# pass them along to snapshot set environment variable
-		shift
-		envN=$1
-		shift
-		envname=$1
-		SNAPCMD_OPT="$SNAPCMD_OPT setenvN $envN $envname"
-		envalue=
-		while test $envN -gt 0; do
-		    shift
-		    envalue="$envalue $1"
-		    envN=`expr $envN - 1`
-		done
-		SNAPCMD_OPT="$SNAPCMD_OPT $envalue"
-		;;
-	    skip)
-		# skip this test
-		skiptest=yes
-		;;
-	    srcdirname)
-		# Use this before using parallel and -n32 since this overrides
-		# the others.
-		shift
-		SRCDIRNAME=$1
-		;;
-	    deploy)
-		# deploy the built binary.
-		shift
-		SNAPCMD_OPT="$SNAPCMD_OPT deploy $1"
-		;;
-	    deploydir)
-		# default directory for deployment.
-		shift
-		SNAPCMD_OPT="$SNAPCMD_OPT deploydir $1"
-		;;
-	    *) # unknown test
-		PRINT "$0: unknown type of test ($1)"
-		retcode=1
-		;;
-	esac
-	shift
-    done
-
-    if [ $retcode -ne 0 -o $skiptest = yes ]; then
-	errcode=$retcode 
-	return $retcode
-    fi
-
-    # Track down the zlib software
-    ans=`$SNAPYARD/current/bin/locate_sw zlib`
-    if [ $? = 0 ]; then
-	Z_INC=`echo $ans | cut -f1 -d,`
-	Z_LIB=`echo $ans | cut -f2 -d,`
-	SNAPCMD_OPT="$SNAPCMD_OPT zlib $Z_INC,$Z_LIB"
-    else
-	# cannot locate zlib software.
-	# continue the test, maybe configure can find it.
-	:
-    fi
-
-    if [ -n "${SRCDIRNAME}" ]; then
-	SNAPCMD_OPT="$SNAPCMD_OPT srcdirname ${SRCDIRNAME}"
-    fi
-
-    # Setup log file name to save test output
-    THIS_MINUTE=`date +%H%M`
-    LOGFILE=${LOGBASENAME}/${SRCDIRNAME}_${TODAY}_${THIS_MINUTE}
-    PRINT "Running snapshot with output saved in"
-    PRINT "   $LOGFILE"
-    (date; PRINT Hostname=$HOSTNAME) >> $LOGFILE
-
-    (
-    cd $SNAPYARD/current
-    $SNAPSHOT $SNAPCMD $SNAPCMD_OPT
-    ) >> $LOGFILE 2>&1
-    retcode=$?
-    [ $retcode -ne 0 ] && errcode=$retcode
-
-    date >> $LOGFILE
-    if [ $retcode -ne 0 ]; then
-        # Dump the first 10 lines and the last 30 lines of the LOGFILE.
-        ( ntail=30
-	    echo =========================
-	    echo "Dumping logfile of ${HOSTNAME}: $TEST_TYPE"
-	    echo "Last $ntail lines of $LOGFILE"
-	    echo =========================
-	    tail -$ntail $LOGFILE
-            echo =========================
-            echo Dumping done
-            echo =========================
-	    echo ""
-	) >> $FAILEDDETAIL
-    fi
-}
-
-TIMELIMIT_PARSE()
-{
-    # Function returns timeparam for timekeeper via standard out - 
-    # any debug statements should be 'echo "Debug string" >&2' or timekeeper 
-    # will declare timeparam to be non-numeric and ignore it.
-    while read x y ; do
-        # Scan for entry for this weekday.
-        xd=`echo $x | cut -f1 -d/`
-        if [ "$xd" = ${WEEKDAY} ]; then
-            # strip away the weekday/ part.
-            timeparam=`echo $x | cut -f2 -d/`
-            break
-        fi
-        case "$x" in
-           '' | '#'*)
-                # blank or comment lines.  Continue.
-                ;;
-            ???/*)
-                # Ignore any entry not of this weekday.
-                ;;
-            *)
-                timeparam="$x"
-                ;;
-        esac
-    done
-    echo $timeparam
-    return
-}
-
-# configuration parsing.
-# Taking configuration from input.
-# This should be invoke with configure file as stdin.
-# Syntax of the configure file:
-#    All lines started with the # are comment lines and are ignored.
-#    Blank lines are ignored too.
-#    Each config line starts with a "Scope" followed by test types.
-#
-# Scope can be:
-#    standard ...          # what the standard test types are.
-#    <host>: <test>        Do <test> for <host> 
-#    all: <test>           Do <test> for all hosts. 
-#    <weekday>/...         Use this scope if the <weekday> matches.
-#                          <weekday> can be {Mon,Tue,Wed,Thu,Fri,Sat,Sun}
-#    If no <host>: input for a <host>, the standard test is used.
-#
-# Test types:
-#    standard		tests defined in standard scope.
-#    -n32		-n32 mode.  Apply to 64/32 bit OS such as IRIX64.
-#    parallel		parallel mode.
-#    op-configure <option>	configure option
-#    op-snapshot <option>	snapshot option
-#    --*		configure option
-#    setenv <name> <value>	set environment variable <name> to <value>
-#                       Pass along to snapshot
-#    setenvN <N> <name> <value> ...
-#		        set environment variable with <N> values
-#		        e.g., setenvN 3 x a b c is same as setenv x="a b c".
-#                       Pass along to snapshot.
-#    skip		skip this test
-#    srcdirname <name>	use <name> as the build-directory.
-#    deploy <name>	deploy the built binary at directory <name>.
-#    deploydir <name>   use <name> as the default directory for deployment.
-SNAPTEST_CONFIG_PARSE()
-{
-    while read x y ; do
-	# Scan for entry for this weekday.
-	xd=`echo $x | cut -f1 -d/`
-	if [ "$xd" = ${WEEKDAY} ]; then
-	    # strip away the weekday/ part.
-	    x=`echo $x | cut -f2 -d/`
-	fi
-	case "$x" in
-	    '' | '#'*)
-		# blank or comment lines.  Continue.
-	    	;;
-	    ???/*)
-		# Ignore any entry not of this weekday.
-		;;
-	    standard)
-		#standard configuration
-		STANDARD_OPT="$y"
-		;;
-	    all: | ${CONFIGNAME}:)
-		# types of test for all hosts or this host
-		if [ -n "$TEST_TYPES" ]; then
-		    TEST_TYPES="$TEST_TYPES ; $y"
-		else
-		    TEST_TYPES="$y"
-		fi
-		;;
-	    *:)	# ignore types of test for other hosts
-		;;
-	    *)	# unknown configuration option
-		PRINT $x $y
-		PRINT "***Unknown configuration option. Ignored.***"
-		;;
-	esac
-    done
-}
-
-# Snap Test configuration parsing.
-# If TEST_TYPES is not set, set it to do the "standard" test.
-SNAPTEST_CONFIG()
-{
-    TEST_TYPES=
-    STANDARD_OPT=
-    if [ -f $SNAPTESTCFG ]; then
-	SNAPTEST_CONFIG_PARSE < $SNAPTESTCFG
-    fi
-    TEST_TYPES=${TEST_TYPES:-'standard'}
-}
-
-
-# Show usage page
-USAGE()
-{
-cat <<EOF
-Usage: runtest [-h] [-debug] [-r<version>] [-all] [-nocvs] [-nodiff] [<host> ...]
-    -h
-	print this help page
-    -debug
-	turn on debug mode
-    -r<version>
-	do runtest for <version>
-    -all
-	launch tests for all pre-defined testing hosts
-    -nocvs
-	do not do cvs commands
-    -nodiff
-	do not do diff commands
-    -setup
-        setup the directory structure for snapshot test
-    -configname <name>
-	use <name> as hostname in the parsing of the snaptest configure file
-    <host>
-	launch tests for <host>
-    
--all and <host> are contradictory and whichever is specified last, is
-the one to take effect.  If neither are given, do the test for the
-local host.
-EOF
-}
-
-
-# Verify if directory ($1) exists.  If not, create it.
-CHECK_DIR()
-{
-   dir=$1
-   if test ! -e $1; then
-      echo mkdir $1
-      mkdir $1
-      errcode=$?
-   elif test ! -d $1; then
-      echo $1 is not a directory
-      errcode=1
-   fi
-}
-
-
-#################################
-# Main
-#################################
-#################################
-# Set up global variables
-#################################
-retcode=0			# error code of individula task
-errcode=0			# error code of the whole test
-skiptest=no			# if test is skipped
-CC_SAVED="$CC"			# CC & PATH maybe changed within a test.
-PATH_SAVED=$PATH		# These save the original values.
-timelimit=300			# default time limit (minutes) for the timekeeper
-
-#################################
-# Parse options
-#################################
-while [ $# -gt 0 ]; do
-    case "$1" in
-	-h) # help--show usage
-	    USAGE
-	    exit 0
-	    ;;
-	-debug*)
-	    # set debug mode
-	    DEBUGMODE="$1"
-	    SNAPSHOT="echo bin/snapshot"
-	    PROGNAME="$PROGNAME $DEBUGMODE"
-	    PRINT "******** DEBUGMODE is $DEBUGMODE ************"
-	    ;;
-	-r*)
-	    # version string
-	    H5VER="$1"
-	    ;;
-	-all)
-	    # Test all hosts.
-	    TESTHOST=-all
-	    ;;
-	-nocvs)
-	    # do not do cvs commands.
-	    NOCVS=nocvs
-	    ;;
-	-nodiff)
-	    # do not do diff commands.
-	    NODIFF=nodiff
-	    ;;
-	-configname)
-	    # use <name> as hostname in the parsing of the snaptest configure file.
-	    shift
-	    CONFIGNAME=$1
-	    ;;
-	-setup)
-	    # setup the directory structure for snapshot test.
-	    CMD=setup
-	    ;;
-	-*) # Unknow option
-	    PRINT "Unknown option ($1)"
-	    USAGE
-	    exit 1
-	    ;;
-	*)
-	    TESTHOST=$*
-	    break
-	    ;;
-    esac
-    shift
-done
-
-# setup H5VER if not set yet
-if [ -z "$H5VER" -a -f bin/snapshot_version ]
-then
-    . bin/snapshot_version
-fi
-
-if [ -n "$H5VER" ]
-then
-    H5VERSION=hdf5_`echo $H5VER | sed -e s/-r// -e s/\\\./_/g`
-    PROGNAME="$PROGNAME $H5VER"
-else
-    H5VERSION=hdf5
-fi
-
-#################################
-# Setup snapshot test directories
-#################################
-BASEDIR=${HOME}/snapshots-${H5VERSION}
-# initial processing of setup option if requested
-if test x-$CMD = x-setup; then
-    CHECK_DIR $BASEDIR
-    test $errcode -ne 0 && exit 1
-elif [ ! -d ${BASEDIR} ]; then
-    echo "BASEDIR ($BASEDIR) does not exist"
-    exit 1
-fi
-# Show the real physical path rather than the symbolic path
-SNAPYARD=`cd $BASEDIR && /bin/pwd`
-# Log file basename
-LOGDIR=${SNAPYARD}/log
-LOGBASENAME=${LOGDIR}
-PASSEDLOG=${LOGDIR}/PASSED_LOG_${TODAY}
-FAILEDLOG=${LOGDIR}/FAILED_LOG_${TODAY}
-FAILEDDETAIL=${LOGDIR}/FAILED_DETAIL_${TODAY}
-SKIPPEDLOG=${LOGDIR}/SKIPPED_LOG_${TODAY}
-TIMELOG=${LOGDIR}/TIME_LOG_${TODAY}
-TIMEKEEPERLOG=${LOGDIR}/TIMEKEEPER_LOG_${TODAY}
-CVSLOG=${LOGDIR}/CVS_LOG_${TODAY}
-CVSLOG_LOCK=${LOGDIR}/CVS_LOG_LOCK_${TODAY}
-DIFFLOG=${LOGDIR}/DIFF_LOG_${TODAY}
-COPYRIGHT_ERR=${LOGDIR}/COPYRIGHT_ERR_${TODAY}
-# Snap Test hosts and Configuration files
-ALLHOSTSFILE=${SNAPYARD}/allhostfile
-SNAPTESTCFG=${SNAPYARD}/snaptest.cfg
-TIMELIMIT=${SNAPYARD}/timelimit
-TMPFILE="${LOGDIR}/#runtest.${TODAY}.$$"
-
-# more processing of setup option if requested
-if test x-$CMD = x-setup; then
-    CHECK_DIR $LOGDIR
-    test $errcode -ne 0 && exit 1
-    CHECK_DIR $LOGDIR/OLD
-    test $errcode -ne 0 && exit 1
-    CHECK_DIR $SNAPYARD/TestDir
-    test $errcode -ne 0 && exit 1
-    # create empty test hosts or configure files if non-existing
-    for f in $ALLHOSTSFILE $SNAPTESTCFG; do
-	if test ! -f $f; then
-	    echo Creating $f
-	    touch $f
-	fi
-    done
-    # create or update the current source.
-    echo update current source
-    $SNAPSHOT checkout 
-    # setup completed.  Exit.
-    exit 0
-fi
-
-#################################
-# Show some host status numbers
-#################################
-# df sometimes hangs due to file system problems.  Invoke it as background
-# process and give it 10 seconds to finish.  If it hangs, just continue.
-uptime
-df &
-sleep 10
-
-#################################
-# Setup test host(s)
-#################################
-if [ "$TESTHOST" = -all ]; then
-    if [ -f $ALLHOSTSFILE ]; then
-	TESTHOST=`sed -e '/^#/d;/^ *$/d' $ALLHOSTSFILE`
-    else
-	PRINT "could not access the all-hosts-file ($ALLHOSTSFILE)"
-	USAGE
-	exit 1
-    fi
-fi
-
-
-#################################
-# Setup to print a trailer summary when exiting not via
-# the normal end of the script.
-#################################
-trap PRINT_TRAILER 0
-
-#
-TotalStartTime=`SecOfDay`
-
-# Process the configuration
-SNAPTEST_CONFIG
-PRINT STANDARD_OPT=$STANDARD_OPT
-PRINT TEST_TYPES=$TEST_TYPES
-PRINT_BLANK
-
-# Do a checkout if one has not been done today.
-# Then check MANIFEST file and copyrights noitces.
-if [ -z "$NOCVS" ]; then
-    PRINT "Running CVS checkout with output saved in"
-    PRINT "   $CVSLOG"
-    # Set CVS lock first
-    touch $CVSLOG_LOCK
-    ($SNAPSHOT checkout ) >> $CVSLOG 2>&1
-    # Save error code and remove the lock
-    errcode=$?
-    rm -f $CVSLOG_LOCK
-    if [ $errcode -ne 0 ]; then
-	# test failed.
-	REPORT_ERR "****FAILED ${HOSTNAME}: CVS checkout****"
-	exit $errcode
-    fi
-    # ===================
-    # Check MANIFEST file
-    # ===================
-    PRINT Checking MAINFEST file ...
-    (cd $SNAPYARD/current; bin/chkmanifest) > $TMPFILE 2>&1
-    errcode=$?
-    if [ $errcode -eq 0 ]; then
-	# test passed.
-	cat $TMPFILE
-    else
-	# test failed.
-	REPORT_ERR "****FAILED ${HOSTNAME}: MANIFEST check****"
-        (   echo =========================
-	    echo "MANIFEST checking failed output"
-	    echo =========================
-	    cat $TMPFILE
-            echo =========================
-	    echo "MANIFEST checking failed output done"
-            echo =========================
-	    echo ""
-	) >> $FAILEDDETAIL
-    fi
-    rm $TMPFILE
-    PRINT_BLANK
-    # No copyright checking until what need copyright is decided. 2006/4/7.
-    if false; then
-    # ======================
-    # Check Copyright notice
-    # ======================
-    PRINT Checking Copyrights notices ...
-    if (cd $SNAPYARD/current; bin/chkcopyright) > $TMPFILE 2>&1 ; then
-	echo Passed.
-    else
-	# Save the output and report some of it.
-	# Do not report it as failed for runtest yet.
-	# Send a separate report mail via hardcoding.
-	# Need fixes/cleanup later.
-	echo "Failed. See detail in another report mail"
-	cp $TMPFILE $COPYRIGHT_ERR
-	nheadlines=300
-	ntaillines=5		# Number of lines in report summary.
-	(
-	    echo =========================
-	    echo "Copyright checking failed. Showing first $nheadlines lines of output."
-	    echo "Complete output is in file $COPYRIGHT_ERR"
-	    echo =========================
-	    nreportlines=`wc -l < $COPYRIGHT_ERR`
-	    if [ $nreportlines -le `expr $nheadlines + $ntaillines` ]; then
-		# Just print the whole file.
-		cat $COPYRIGHT_ERR
-	    else
-		# Show the first $nheadlines plus report summary
-		head -$nheadlines $COPYRIGHT_ERR
-		echo ...
-		tail -$ntaillines $COPYRIGHT_ERR
-	    fi 
-	)  | Mail -s "${H5VERSION} Copyrights check Failed" hdf5lib
-    fi
-    rm $TMPFILE
-    PRINT_BLANK
-    fi
-else
-    # make sure the cvs update, if done by another host, has completed.
-    # First wait for the presence of $CVSLOG which signals some host
-    # has started the cvs update.  Then wait for the absense of $CVSLOG_LOCK
-    # which signals the host has completed the cvs update.
-    WAITFOR $CVSLOG 90
-    if [ $WAIT_STATUS -ne 0 ]; then
-	errcode=$WAIT_STATUS
-	REPORT_ERR "****FAILED ${HOSTNAME}: Time expired waiting CVS update to start****"
-	exit $errcode
-    fi
-    WAITTILL $CVSLOG_LOCK 10
-    if [ $WAIT_STATUS -ne 0 ]; then
-	errcode=$WAIT_STATUS
-	REPORT_ERR "****FAILED ${HOSTNAME}: Time expired waiting CVS update to finish****"
-	exit $errcode
-    fi
-fi
-
-# run a snapshot diff to see if any significant differences between
-# the current and previous versions
-if [ -z "$NODIFF" ]; then
-    $SNAPSHOT diff >> $DIFFLOG 2>&1
-    errcode=$?
-    # check the errcode only if NOT in DEBUG MODE
-    if [ -z "$DEBUGMODE" -a $errcode -eq 0 ]; then
-	# no need to run test
-	PRINT "NO TEST: no significant differences between current and previous versions" |
-	    tee -a $PASSEDLOG
-	exit 0
-    fi
-fi
-
-# we can use the version of script in SNAPYARD/current now.
-# Don't do the diff or cvs update any more.
-PROGNAME="$SNAPYARD/current/$PROGNAME -nodiff -nocvs"
-
-# Decide to do test for the local host or for remote hosts
-if [ -n "$TESTHOST" -a $HOSTNAME != "$TESTHOST" ]; then
-    date
-    PRINT "*** launching tests from $HOSTNAME ***"
-    PRINT_BLANK
-    TEST_TYPE="launching"
-    cd ${SNAPYARD}/log
-    # Fork off timekeeper if concurrent tests will be used.
-    if [ -n "$SRCDIR" ]; then
-        timelimit=`TIMELIMIT_PARSE < $TIMELIMIT`
-	($SNAPYARD/current/bin/timekeeper $timelimit > $TIMEKEEPERLOG 2>&1 &)
-	PRINT "    Fork off timekeeper $timelimit"
-    fi
-    runtest_type="hosts"
-    for h in $TESTHOST; do
-	# Must do CONFIGNAME before $h got changed by the second cut.
-	# cut returns the whole string if there is no / in the string
-	# at all.  But that works okay for the CONFIGNAME too.
-	CONFIGNAME=`echo $h | cut -f2 -d/`
-	h=`echo $h | cut -f1 -d/`
-	n_test=`expr $n_test + 1`
-	TMP_OUTPUT="#${h}_${CONFIGNAME}.out"
-	(PRINT "=============="
-	 PRINT "Testing $h"
-	 PRINT "==============") > $TMP_OUTPUT
-	CHECK_RSH $h
-	# run the remote shell command with output to $TMP_OUTPUT
-	case "$RSH" in
-	    rsh|ssh)
-		CMD="$RSH $h -n $PROGNAME -configname $CONFIGNAME"
-		PRINT $CMD
-
-		# launch concurrent tests only if srcdir is used
-		if [ -n "$SRCDIR" ]; then
-		    $CMD || REPORT_ERR "****FAILED ${h}: Abnormal exit from runtest****" && PRINT_BLANK &
-		    echo $! > PID.${h}_${CONFIGNAME}
-		else
-		    $CMD || REPORT_ERR "****FAILED ${h}: Abnormal exit from runtest****" && PRINT_BLANK
-		fi
-		;;
-	    NoRemoteCommand)
-		PRINT $h does not accept Remote Command "(`date`)"
-		;;
-	    NotReachable)
-		PRINT $h is not reachable  "(`date`)"
-		;;
-	    *)
-		PRINT "CHECK_RSH for $h returned unknow result ($RSH)"
-		;;
-	esac >> $TMP_OUTPUT 2>&1
-    done
-    # wait for all launched tests to finish, then cat them back out.
-    wait
-    # Pause a moment in case the timekeeper is terminating processes.
-    wait 30
-    for h in $TESTHOST; do
-	CONFIGNAME=`echo $h | cut -f2 -d/`
-	h=`echo $h | cut -f1 -d/`
-	TMP_OUTPUT="#${h}_${CONFIGNAME}.out"
-	cat $TMP_OUTPUT
-	# Verify test script did complete by checking the last lines
-	(tail -5 $TMP_OUTPUT | grep -s 'Grand total' > /dev/null 2>&1) ||
-	    (REPORT_ERR "****FAILED ${h}: snaptest did not complete****" &&
-		PRINT_BLANK)
-	rm -f $TMP_OUTPUT PID.${h}_${CONFIGNAME}
-    done
-    exit 0
-fi
-
-# run the test(s)
-# Note that first field is cut without -s but all subsequent cut
-# must use -s.  If -s is not used at all, a $TEST_TYPES that has
-# no ';' (only 1 test), will pass through intact in all cut. That
-# results in infinite looping.
-# If -s is used with the first field, it will suppress completely
-# a $TYPE_TYPES that has no ';' (only 1 tst ).  That results in no
-# test at all.
-# Note that n_test must start as 1.
-# 
-n_test=1
-runtest_type="tests"
-TEST="`echo $TEST_TYPES | cut -f$n_test -d';'`"
-while [ -n "$TEST" ]; do
-    StartTime=`SecOfDay`
-    RUNSNAPTEST $TEST
-    REPORT_RESULT
-    PRINT_TEST_TRAILER
-
-    n_test=`expr $n_test + 1`
-    TEST="`echo $TEST_TYPES | cut -f$n_test -s -d';'`"
-done
-# dec n_test to show the actual number of tests ran.
-n_test=`expr $n_test - 1`
-
-PRINT_TRAILER
-
-# disable trailer summary printing since all trailers have been
-# printed and we are exiting normally.
-trap 0
-exit $errcode

bin/snapshot

@@ -1,837 +0,0 @@
-#!/bin/sh
-#
-# Copyright by The HDF Group.
-# Copyright by the Board of Trustees of the University of Illinois.
-# All rights reserved.
-#
-# This file is part of HDF5.  The full HDF5 copyright notice, including
-# terms governing use, modification, and redistribution, is contained in
-# the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
-# If you do not have access to either file, you may request a copy from
-# help@hdfgroup.org.
-
-# This script should be run nightly from cron.  It checks out the source 
-# from the source repository and compares it against the previous
-# snapshot.  If anything significant changed then a new snapshot is
-# created, the minor version number is incremented, and the change is
-# checked back into the source repository.
-#
-
-
-# function definitions
-TIMESTAMP()
-{
-    echo "=====" "$1": "`date`" "====="
-}
-
-EXIT_BANNER()
-{
-    TIMESTAMP "Exit $PROGNAME with status=$?"
-}
-
-# Show current total disk usage.
-DISKUSAGE()
-{
-    du -ks | \
-    ( read x y; echo "Disk Usage=$x KB" )
-}
-
-# function provided for testing software downloaded as tar files.  A version of
-# this function that properly extracts the downloaded files can be provided in 
-# the snapshots-${sw}-overrides file.
-EXTRACT()
-{
-   echo "Error:  ${SWVERSION} is in source repository - does not need extraction."
-}
-
-# Standard procedure for checking out or updating source code from an hdfgroup
-# git repository.  Override the function for other repositories or procedures.
-SOURCE_CHECKOUT()
-{
-   if test -n $GIT_URL; then
-      if [ -n "$AUTOGEN" ]; then
-         echo "Creating fresh clone of $GIT_URL in $BASEDIR/current_src"
-         # Check out the current version from source repository.
-         (cd $BASEDIR; rm -rf current_src
-          if test -z $GIT_BRANCH; then
-             echo "Testing empty branch $GIT_BRANCH." 
-             git clone $GIT_URL current_src
-          else
-             echo "Testing branch $GIT_BRANCH." 
-             git clone $GIT_URL -b $GIT_BRANCH current_src
-          fi
-          ) || exit 1
-      else
-         echo "Creating fresh clone of $GIT_URL in $BASEDIR/current"
-         # Check out the current version from source repository.
-         (cd $BASEDIR; rm -rf current
-          if test -n $GIT_BRANCH; then
-             git clone $GIT_URL -b $GIT_BRANCH current
-          else
-             git clone $GIT_URL current
-          fi ) || exit 1
-      fi
-   else
-      echo "Warning!  Source directory ("current") is not checked out from git."
-   fi
-}
-
-# Standard procedure for running the configure command in a build (test)
-# directory
-RUNCONFIGURE()
-{
-    if [ "${CURRENT}" != "${TESTDIR}" -a "$CPSRC" = "yes" ]; then
-        echo "Copying source files to ${TESTDIR}."
-        cp -pr ${CURRENT}/* ${TESTDIR}
-        cd ${TESTDIR}
-        ./${CONFIGURE}
-    elif [ -n "${AUTOGEN}" ]; then
-        ${CURRENTSRC}/${CONFIGURE}
-    else 
-        ${CURRENT}/${CONFIGURE} 
-    fi
-}
-
-# Sometimes "make distclean" doesn't adequately remove files from the previous
-# build.  If a build (test) directory was used, its contents can be entirely 
-# deleted to provide a clean start.  If the test is building in the source 
-# directory, the contents can't be deleted, so run "make distclean".
-DISTCLEAN()
-{
-    if [ "${srcdir}" = "yes" -a -n "${SRCDIRNAME}" -a -d ${BASEDIR}/TestDir/${SRCDIRNAME} ]; then
-        echo "Remove contents of $SRCDIRNAME.\n"
-        rm -rf ${BASEDIR}/TestDir/${SRCDIRNAME}/*
-    else
-       echo "$MAKE distclean"
-       (cd ${TESTDIR} && ${MAKE} distclean)
-    fi
-}
-
-# Several of the software packages tested do not support make check-install.
-# Those that support it should have a version of this function in their 
-# override with the following lines:
-#     TIMESTAMP "check-install $1" 
-#     ${MAKE} check-install $1
-CHECKINSTALL()
-{
-    echo "check-install is not supported for ${SWVERSION}"
-}
-
-# Function for hdf4 and hdf5 to override to check in changes after snapshot.
-# Safety measure to avoid unintended checkins to other repositories.
-COMMITSNAPSHOT()
-{
-    echo "original hdf5 script committed code changes back into git."
-}
-
-DISPLAYUSAGE()
-{
-    set -
-    cat <<EOF
-Usage: $PROGNAME [all] [checkout] [ftp <URL> [diff] [test] [srcdir] [release] [help]
-        [clean] [distclean] [echo] [deploy <dir>] [deploydir <dir>]
-        [zlib <zlib_path>] [releasedir <dir>] [srcdirname <dir>] [check-vfd]
-        [check-passthrough-vol]
-        [exec <command>] [module-load <module-list>] [op-configure <option>]
-        [--<option>]
-    all:      Run all commands (checkout, test & release)
-              [Default is all]
-    checkout: Run source checkout
-    diff:     Run diff on current and previous versions.  Exit 0 if
-              no significant differences are found.  Otherwise, non-zero.
-    deploy:   deploy binary to directory <dir>
-    deploydir: use <dir> as the default directory for deployment
-    test:     Run test
-    release:  Run release
-    clean:    Run make clean
-    distclean:Run make distclean
-    echo:     Turn on echo mode (set -x)
-    setenv <name> <value>:
-              Set environment variable <name> to <value>.
-    setenvN <N> <name> <value> ...:
-              Set environment variable with <N> values.
-              E.g., setenvN 3 x a b c is same as setenv x="a b c".
-    srcdir:   Use srcdir option (does not imply other commands)
-              "snapshot srcdir" is equivalent to "snapshot srcdir all"
-              "snapshot srcdir checkout" is equivalent to "snapshot checkout"
-    srcdirname <dir>:
-              Use <dir> as the srcdir testing directory if srcdir is choosen.
-              If <dir> starts with '-', it is append to the default name
-              E.g., "snapshot srcdir srcdirname -xx" uses hostname-xx
-              [Default is hostname]
-    help:     Print this message
-    echo:     Turn on shell echo
-    zlib <zlib_path>:
-              Use <zlib_path> as the ZLIB locations
-              [Default is $ZLIB_default]
-    releasedir <dir>:
-              Use <dir> as the release directory
-              [Default is $ReleaseDir_default]
-    check-vfd:
-              Run make check-vfd instead of just make check.
-    check-passthrough-vol:
-              Run make check-passthrough-vol instead of just make check.
-              NOTE: Will only succeed with passthrough VOL connectors
-              that use the native VOL connector as the terminal
-              connector.
-    exttest <testscript>;
-              Run testscript;
-    exec <command>:
-              Run <command>;
-    module-load <module-list>:
-              Load modules in comma-separated <module-list>;
-    op-configure <option>:
-              Pass <option> to the configure command
-              E.g., "snapshot op-configure --enable-parallel"
-                  configures for parallel mode
-    --<option>:
-              Pass --<option> to the configure command
-              E.g., "snapshot --enable-parallel"
-                  configures for parallel mode
-EOF
-    exit $errcode
-}
-
-# MAIN
-# SGI /bin/sh replaces $0 as function name if used in a function.
-# Set the name here to avoid that ambiguity and better style too.
-PROGNAME=$0
-SNAPSHOTNAME=
-HDFREPOS=
-DOCVERSION=""
-MODULELIST=""
-
-if [ -f bin/snapshot_params ]; then
-   . bin/snapshot_params
-   echo "Added snapshot_params."
-fi
-if [ -z "$SWVER" -a -f bin/snapshot_version ]
-then
-   . bin/snapshot_version
-   echo "Added snapshot_version."
-fi
-if [ -n ${HDFREPOS} -a -f  bin/snapshot-${HDFREPOS}-overrides ]; then
-   . bin/snapshot-${HDFREPOS}-overrides
-   echo "Added snapshot-${HDFREPOS}-overrides."
-fi 
-
-echo "====================================="
-echo "$PROGNAME $*"
-echo "====================================="
-TIMESTAMP MAIN
-uname -a
-
-# setup exit banner message
-trap EXIT_BANNER 0 1 2 9 15
-
-# Dump environment variables before option parsing
-echo ===Dumping environment variables before option parsing ===
-printenv | sort
-echo ===Done Dumping environment variables before option parsing ===
-
-# snapshots release directory.  Default relative to $BASEDIR.
-ReleaseDir_default=release_dir
-
-# Where is the zlib library?
-# At NCSA, half of the machines have it in /usr/lib, the other half at
-# /usr/ncsa/lib.  Leave it unset.
-ZLIB_default=
-ZLIB=$ZLIB_default
-
-# What compression methods to use? (md5 does checksum).  Doc was apparently 
-# added as a compression method to create a separate tarfile containing the
-# documentation files for v 1.8 and above.
-if [ "${SWVERSION}" = "hdf5_1_6" ]; then
-    METHODS="gzip bzip2 md5"
-else
-    METHODS="gzip bzip2 doc"
-fi
-
-# Use User's MAKE if set.  Else use generic make.
-MAKE=${MAKE:-make}
-
-# Default check action.
-CHECKVAL=check
-
-#
-# Command options
-cmd="all"
-test_opt=""
-errcode=0
-AUTOGEN=""
-EXTTEST=""
-EXEC_CMD_ARG=""
-while [ $# -gt 0 ] ; do
-    case "$1" in
-	all)	
-	    cmd="all"
-	    ;;
-        checkout-autogen)
-            cmdcheckout="checkout"
-            AUTOGEN="autogen"
-            cmd=""
-            ;;
-	checkout)
-	    cmdcheckout="checkout"
-	    cmd=""
-	    ;;
-        ftp)
-            echo "Setting ftp flags in snapshot script"
-            cmdcheckout="checkout"
-            cmdftp="ftp"
-            cmd=""
-            shift
-	    if [ $# -lt 1 ]; then
-		echo "URL missing"
-		errcode=1
-		cmd="help"
-		break
-	    fi
-            ftp_url="$1"
-            echo "ftp_url is $ftp_url"
-            ;;
-	diff)
-	    cmddiff="diff"
-	    cmd=""
-	    ;;
-	deploy)
-	    # deploy the built binary.
-	    shift
-	    if [ $# -lt 1 ]; then
-		echo "deploy <dir> missing"
-		errcode=1
-		cmd="help"
-		break
-	    fi
-	    cmddeploy="deploy"
-	    DEPLOYDIRNAME="$1"
-	    ;;
-	deploydir)
-	    # default directory for deployment.
-	    shift
-	    if [ $# -lt 1 ]; then
-		echo "deploydir <dir> missing"
-		errcode=1
-		cmd="help"
-		break
-	    fi
-	    deploydir="$1"
-	    ;;
-	test)
-	    cmdtest="test"
-	    cmd=""
-	    ;;
-	setenv)
-	    # set environment variable
-	    shift
-	    eval $1="$2"
-	    export $1
-	    shift
-	    ;;
-	setenvN)
-	    # set environment variable with $1 values
-	    # e.g., setenvN 3 x a b c is same as setenv x="a b c".
-	    # a kludge now--the extra single quotes are needed
-	    # else eval complains.
-	    shift
-	    envN=$1
-	    shift
-	    envname=$1
-	    envalue=
-	    while test $envN -gt 0; do
-		shift
-		envalue="$envalue $1"
-		envN=`expr $envN - 1`
-	    done
-	    eval $envname="'$envalue'"
-	    export $envname
-	    ;;
-	srcdir)
-	    #use srcdir option for test
-	    srcdir="yes"
-	    ;;
-	srcdirname)
-	    shift
-	    if [ $# -lt 1 ]; then
-		echo "srcdirname <dir> missing"
-		errcode=1
-		cmd="help"
-		break
-	    fi
-	    SRCDIRNAME="$1"
-	    ;;
-	release)
-	    cmdrel="release"
-	    cmd=""
-	    ;;
-        autogen-release)
-            cmdrel="autogen-release"
-            cmd=""
-            ;;
-	clean | distclean)
-	    cmdclean="$1"
-	    cmd=""
-	    ;;
-	help)
-	    cmd="help"
-	    break
-	    ;;
-	echo)
-	    set -x
-	    break
-	    ;;
-	zlib)
-	    shift
-	    if [ $# -lt 1 ]; then
-		echo "ZLIB information missing"
-		errcode=1
-		cmd="help"
-		break
-	    fi
-	    ZLIB="$1"
-	    ;;
-	releasedir)
-	    shift
-	    if [ $# -lt 1 ]; then
-		echo "Release directory name missing"
-		errcode=1
-		cmd="help"
-		break
-	    fi
-	    ReleaseDir="$1"
-	    ;;
-        exttest)
-            shift
-	    if [ $# -lt 1 ]; then
-		echo "exttest script name missing"
-		errcode=1
-		cmd="help"
-		break
-	    fi
-	    cmd=""
-            EXTTEST="$1"
-            ;;
-        exec)
-            shift
-	    if [ $# -lt 1 ]; then
-		echo "exec command name missing"
-		errcode=1
-		cmd="help"
-		break
-	    fi
-	    cmd=""
-            EXEC_CMD_ARG="$@"
-	    # exit the parsing while loop since all arguments have been consummed.
-	    break
-            ;;
-	check-vfd)
-	    CHECKVAL=check-vfd
-	    ;;
-	check-passthrough-vol)
-	    CHECKVAL=check-passthrough-vol
-	    ;;
-        module-load)
-            shift
-            if [ $# -lt 1 ]; then
-                echo "missing module list to load"
-                errcode=1
-                cmd="help"
-                break
-            fi 
-            MODULELIST="$1"
-            ;;
-	--*)
-	    OP_CONFIGURE="$OP_CONFIGURE $1"
-	    ;;
-	op-configure)
-	    shift
-	    if [ $# -lt 1 ]; then
-		echo "op-configure option missing"
-		errcode=1
-		cmd="help"
-		break
-	    fi
-	    OP_CONFIGURE="$OP_CONFIGURE $1"
-	    ;;
-	*)
-	    echo "Unkown option $1"
-	    errcode=1
-	    cmd="help"
-	    break
-	    ;;
-    esac
-    shift
-done
-
-if [ -n "$MODULELIST" ]; then
-   . ~/.bashrc
-   module use /opt/pkgs/modules/all
-   # load module command will take a space separated list of modules.
-   # If we have a comma separated list, convert ',' to ' '.
-   MODULELIST="$( echo -e "$MODULELIST" | tr  ',' ' '  )"  
-   module load $MODULELIST
-fi
-
-# Dump environment variables after option parsing
-echo ===Dumping environment variables after option parsing ===
-printenv | sort
-echo ===Done Dumping environment variables after option parsing ===
-
-if [ "$cmd" = help ]; then
-   DISPLAYUSAGE
-fi
-
-# Setup the proper configure option (--with-zlib) to use zlib library
-# provide ZLIB is non-empty.
-ZLIB=${ZLIB:+"--with-zlib="$ZLIB}
-# Adding --prefix as a configure option will put the path to the deploy 
-# directory in the initial libhdf5*.la files
-if [ -n "$DEPLOYDIRNAME" ]; then
-   OP_CONFIGURE="$OP_CONFIGURE --prefix=${deploydir}/${DEPLOYDIRNAME}"
-fi
-CONFIGURE="configure $OP_CONFIGURE"
-# echo "Configure command is $CONFIGURE"
-
-# Execute the requests
-snapshot=yes
-
-BASEDIR=${HOME}/snapshots-${SNAPSHOTNAME}
-if [ ! -d ${BASEDIR} ]; then
-    echo "BASEDIR ($BASEDIR) does not exist"
-    exit 1
-fi
-
-CURRENT=${BASEDIR}/current
-PREVIOUS=${BASEDIR}/previous
-ReleaseDir=${ReleaseDir:=${BASEDIR}/${ReleaseDir_default}}
-HOSTNAME=`hostname | cut -f1 -d.`	# no domain part
-
-# Try finding a version of diff that supports the -I option too.
-DIFF=diff
-for d in `echo $PATH | sed -e 's/:/ /g'` ; do
-    test -x $d/diff && $d/diff -I XYZ /dev/null /dev/null > /dev/null 2>&1 &&
-	DIFF=$d/diff && break
-done
-
-#=============================
-# Run source checkout
-#=============================
-if [ "$cmd" = "all" -o -n "$cmdcheckout" ]; then
-    TIMESTAMP "checkout"
-    # ${BASEDIR}/bin is now updated from git by EveningMaint or DailyMaint
-    # to avoid updating the scripts in ${BASEDIR}/bin while they are running.
-
-    if [ -z "$AUTOGEN" ]; then
-        # If there is a Makefile in ${CURRENT}, the last test done in it
-        # has not been distclean'ed.  They would interfere with other
-        # --srcdir build since make considers the files in ${CURRENT}
-        # take precedence over files in its own build-directory.  Run
-        # a "make distclean" to clean them all out.  This is not really
-        # part of the "checkout" functions but this is the most convenient
-        # spot to do the distclean.  We will also continue the checkout process
-        # regardless of the return code of distclean.
-        ( cd ${CURRENT}; test -f Makefile && ${MAKE} distclean)
-    fi
-    # echo "cmdftp is $cmdftp;  ftp_url is $ftp_url"
-    if [ -n "$cmdftp" ]; then
-        echo "Get the NetCDF4 source from their ftp server."
-        echo "Command executed is: 2>&1 wget -N $ftp_url" 
-        cd ${BASEDIR};
-        WGET_OUTPUT="`2>&1 wget -N $ftp_url`"
-        errcode=$?
-        if [[ $errcode -ne 0 ]]; then
-            exit $errcode
-        fi
-
-        if [ $? -ne 0 ];then
-            echo $0: "$WGET_OUTPUT" Exiting.
-            exit 1
-        fi
-
-        # echo "Wget output was $WGET_OUTPUT"
-
-        if echo "$WGET_OUTPUT" | fgrep 'not retrieving' &> /dev/null
-        then
-            echo "Snapshot unchanged"
-        else
-            echo "New snapshot downloaded"
-            EXTRACT
-        fi
-    else
-        SOURCE_CHECKOUT
-    fi
-fi # Do source checkout
-
-
-#=============================
-# Run Test the HDF5 library
-#=============================
-if [ "$cmd" = "all" -o -n "$cmdtest" -o -n "$cmddiff" ]; then
-    TIMESTAMP "Run Tests"
-    # setup if srcdir is used.
-    if [ -z "$srcdir" ]; then
-	TESTDIR=${CURRENT}
-    else
-	#create TESTDIR if not exist yet
-	case "$SRCDIRNAME" in
-	"")
-	    SRCDIRNAME=$HOSTNAME
-	    ;;
-	-*)
-	    SRCDIRNAME="$HOSTNAME$SRCDIRNAME"
-	    ;;
-	esac
-	TESTDIR=${BASEDIR}/TestDir/${SRCDIRNAME}
-	test -d ${TESTDIR} || mkdir ${TESTDIR}
-        # set TESTDIR to use the direct path to the local test directory
-        # rather than the path through ${BASEDIR}.
-        cd ${TESTDIR}
-        TESTDIR=`pwd -P`
-        cd ${CURRENT}
-    fi
-    # Make sure current version exists and is clean
-    if [ -d ${TESTDIR} ]; then
-        DISTCLEAN    
-    else
-	errcode=$?
-        snapshot=no
-        exit $errcode
-    fi
-
-    # Compare it with the previous version.  Compare only files listed in
-    # the MANIFEST plus the MANIFEST itself.
-    if [ -d ${PREVIOUS} ]; then
-        if [ -z "${AUTOGEN}" ]; then
-            CURRENTSRC=${CURRENT}
-        else
-            CURRENTSRC=${BASEDIR}/current_src
-        fi
-	if (${DIFF} -c ${PREVIOUS}/MANIFEST ${CURRENTSRC}/MANIFEST); then
-	    snapshot=no
-	    for src in `grep '^\.' ${CURRENTSRC}/MANIFEST|expand|cut -f1 -d' '`; do
-		if ${DIFF} -I H5_VERS_RELEASE -I " released on " \
-		    -I " currently under development" \
-		    ${PREVIOUS}/$src ${CURRENTSRC}/$src
-		then
-		    :	#continue
-		else
-		    snapshot=yes
-		    break
-		fi
-	    done
-	fi
-    fi
-
-    # if diff is choosen, exit 0 if no significant differences are found.
-    # otherwise, exit 1.  This includes cases of other failures.
-    if [ -n "$cmddiff" ]; then
-	if [ $snapshot = no ]; then
-	    exit 0
-	else
-	    exit 1
-	fi
-    fi
-
-    #=============================
-    # Execute command if defined
-    #=============================
-    #echo BEFORE EXEC command
-    #echo EXEC_CMD_ARG=${EXEC_CMD_ARG}
-    
-    if [ -n "$EXEC_CMD_ARG" ]; then
-        TIMESTAMP ${EXEC_CMD_ARG}
-        TESTDIR=${BASEDIR}/TestDir/${SRCDIRNAME}
-        test -d ${TESTDIR} || mkdir ${TESTDIR}
-	if cd ${TESTDIR}; then
-	    # clean up the directory before executing the command
-	    # Do we need to clean first?
-	    # rm -rf *
-	    #
-	    # If EXEC_CMD_ARG starts with a '/', it has an absolute path, else it is
-	    # relative to the BASEDIR.
-	    case "$EXEC_CMD_ARG" in
-	    /*)
-                ${EXEC_CMD_ARG}
-		;;
-	    *)
-                ${BASEDIR}/${EXEC_CMD_ARG}
-		;;
-	    esac
-	    errcode=$?
-	else
-	    echo "${TESTDIR} not accessible"
-	    errcode=1
-	fi
-	# exit snapshot since nothing else to do, for now.
-        exit $errcode
-    fi
-
-    # Build, run tests and install procedures
-    if [ "$snapshot" = "yes" ] && [ "$NOMAKE" != "yes" ]; then
-        FAIL_SECTION="" 
-        if [ -f ${TESTDIR}/failsection ]; then
-            rm ${TESTDIR}/failsection
-        fi
-	if (cd ${TESTDIR} && \
-	    TIMESTAMP "configure" && echo "configure" > ${TESTDIR}/failsection && \
-	    RUNCONFIGURE && \
-            sleep 2 && \
-	    TIMESTAMP "make" && echo "make" > ${TESTDIR}/failsection && \
-	    ${MAKE} && DISKUSAGE \
-	    TIMESTAMP ${CHECKVAL} && echo "make check" > ${TESTDIR}/failsection &&  \
-	    ${MAKE} ${CHECKVAL} && DISKUSAGE \
-	    TIMESTAMP "install" && echo "make install" > ${TESTDIR}/failsection && \
-	    ${MAKE} install && DISKUSAGE \
-            TIMESTAMP "check-install" && echo "make check-install" > ${TESTDIR}/failsection && \
-	    CHECKINSTALL && DISKUSAGE \
-	    TIMESTAMP "uninstall" && echo "make uninstall" > ${TESTDIR}/failsection && \
-	    ${MAKE} uninstall && DISKUSAGE); then
-	    :
-	else
-	    errcode=$?
-            FAIL_SECTION=`cat ${TESTDIR}/failsection`
-            echo "Failed running ${FAIL_SECTION}"
-	    snapshot=no
-	    exit $errcode
-	fi
-    elif [ $CPSRC ]; then
-           cp -pr ${CURRENT}/* ${TESTDIR}
-    else 
-        cmdclean=""
-    fi
-fi # Test the HDF5 library
-
-# Run external test if configured
-
-#=============================
-#=============================
-#if [ -d "$CURRENT" ]; then
-if [ "$EXTTEST" != "" ]; then
-    TIMESTAMP ${EXTTEST}
-    TESTDIR=${BASEDIR}/TestDir/${SRCDIRNAME}
-    test -d ${TESTDIR} || mkdir ${TESTDIR}
-    cd ${TESTDIR}
-    sleep 1
-    TIMESTAMP $pwd
-    ls
-    ${BASEDIR}/${EXTTEST}
-    errcode=$?
-    exit $errcode
-fi
- 
-#=============================
-# Run deployment if requested.
-#=============================
-if [ -n "$DEPLOYDIRNAME" ]; then
-    # The daily tests deploy to .../hdf5/... or .../hdf4/... except on cobalt where the
-    # deploy directory is in .../HDF5/...  lc will take care of this.  If hdf4 or hdf5
-    # either upper or lower case isn't in the path, RELEASE.txt won't be found unless
-    # it is in $CURRENT. 
-    POS4=`perl -e "print index(lc(\"${deploydir}/${DEPLOYDIRNAME}\"), 'hdf4')"`
-    POS5=`perl -e "print index(lc(\"${deploydir}/${DEPLOYDIRNAME}\"), 'hdf5')"`
-    if [ "${POS4}" -ge "0" ]; then
-        RELEASE_TXT_LOC="release_notes"
-    elif [ "${POS5}" -ge "0" ]; then
-        RELEASE_TXT_LOC="release_docs"
-    else
-        RELEASE_TXT_LOC=""
-    fi
- 
-    if [ "$snapshot" = "yes" ]; then
-	TIMESTAMP "deploy"
-        if (cd ${TESTDIR} &&
-            ${BASEDIR}/bin/deploy ${deploydir}/${DEPLOYDIRNAME} && \
-            TIMESTAMP "clean" && \
-            ${MAKE} clean && \
-            TIMESTAMP "check-install prefix=${deploydir}/${DEPLOYDIRNAME}" && \
-            CHECKINSTALL prefix=${deploydir}/${DEPLOYDIRNAME}); then
-                cd ${CURRENT}  
-                cp ${RELEASE_TXT_LOC}/RELEASE.txt ${deploydir}/${DEPLOYDIRNAME} 
-                cp COPYING ${deploydir}/${DEPLOYDIRNAME}
-	    #:	#continue
-	else
-	    errcode=$?
-	    exit $errcode
-	fi
-    fi
-fi # Deploy
-
-
-#=============================
-# Run Release snapshot, update version, and commit to source repository
-#=============================
-if [ "$cmd" = "all" -o -n "$cmdrel" ]; then
-    if [ "$snapshot" = "yes" ]; then
-	TIMESTAMP "release"
-        DISTCLEAN
-	(
-	    # Turn on exit on error in the sub-shell so that it does not
-	    # commit source if errors encounter here.
-	    set -e
-            if [ "$cmdrel" = "autogen-release" ]; then
-                cd ${BASEDIR}/current_src
-            else
-	        cd ${CURRENT}
-            fi
-            if [ "$HDFREPOS" = "hdf4" ]; then
-	        RELEASE_VERSION="`perl bin/h4vers -v`"
-	        echo "Making snapshot release ($RELEASE_VERSION) to ${ReleaseDir}..."
-	        bin/release -d $ReleaseDir $METHODS
-	        perl bin/h4vers -i
-            elif [ "$HDFREPOS" = "hdf5" ]; then
-	        RELEASE_VERSION="`perl bin/h5vers -v`"
-	        echo "Making snapshot release ($RELEASE_VERSION) to ${ReleaseDir}..."
-                if [ "${DOCVERSION}" ]; then
-	            bin/release -d $ReleaseDir --docver ${DOCVERSION} $METHODS
-                else
-	            bin/release -d $ReleaseDir $METHODS
-                fi
-	        perl bin/h5vers -i
-            else
-                echo "need real release steps.  For now, only move current version to previous"
-            fi
-            COMMITSNAPSHOT
-	)
-	errcode=$?
-    fi
-
-    # Replace the previous version with the current version.
-    # Should check if the errcode of the release process but there
-    # are other failures after release was done (e.g. h5vers or git failures)
-    # that should allow the replacement to occure.
-    rm -rf ${PREVIOUS}
-    mv ${CURRENT} ${PREVIOUS}
-fi #Release snapshot
-
-
-#=============================
-# Clean the test area.  Default is no clean.
-#=============================
-if [ -n "$cmdclean" ] && [ "$NOMAKE" != "yes" ]; then
-    TIMESTAMP "clean"
-    # setup if srcdir is used.
-    if [ -z "$srcdir" ]; then
-	TESTDIR=${CURRENT}
-    else
-	case "$SRCDIRNAME" in
-	"")
-	    SRCDIRNAME=$HOSTNAME
-	    ;;
-	-*)
-	    SRCDIRNAME="$HOSTNAME$SRCDIRNAME"
-	    ;;
-	esac
-	TESTDIR=${BASEDIR}/TestDir/${SRCDIRNAME}
-    fi
-    # clean it
-    if (cd ${TESTDIR} && ${MAKE} $cmdclean ) then
-	:
-    else
-	errcode=$?
-        snapshot=no
-        exit $errcode
-    fi
-fi # Clean the Test directory
-
-exit $errcode

bin/snapshot_version

@@ -1,19 +0,0 @@
-#
-# Copyright by The HDF Group.
-# Copyright by the Board of Trustees of the University of Illinois.
-# All rights reserved.
-#
-# This file is part of HDF5.  The full HDF5 copyright notice, including
-# terms governing use, modification, and redistribution, is contained in
-# the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
-# If you do not have access to either file, you may request a copy from
-# help@hdfgroup.org.
-#
-
-# default version for snapshot test
-# H5VERSION matches with a source version symbolic name.  Will test use the
-# latest revision of that branch.  If set to "hdf5", it uses the main
-# version.
-# H5VER tells runtest which version to run
-H5VERSION=hdf5

bin/switch_maint_mode

@@ -7,7 +7,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #

bin/test-driver

@@ -0,0 +1,148 @@
+#! /bin/sh
+# test-driver - basic testsuite driver script.
+
+scriptversion=2013-07-13.22; # UTC
+
+# Copyright (C) 2011-2014 Free Software Foundation, Inc.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation; either version 2, or (at your option)
+# any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <http://www.gnu.org/licenses/>.
+
+# As a special exception to the GNU General Public License, if you
+# distribute this file as part of a program that contains a
+# configuration script generated by Autoconf, you may include it under
+# the same distribution terms that you use for the rest of that program.
+
+# This file is maintained in Automake, please report
+# bugs to <bug-automake@gnu.org> or send patches to
+# <automake-patches@gnu.org>.
+
+# Make unconditional expansion of undefined variables an error.  This
+# helps a lot in preventing typo-related bugs.
+set -u
+
+usage_error ()
+{
+  echo "$0: $*" >&2
+  print_usage >&2
+  exit 2
+}
+
+print_usage ()
+{
+  cat <<END
+Usage:
+  test-driver --test-name=NAME --log-file=PATH --trs-file=PATH
+              [--expect-failure={yes|no}] [--color-tests={yes|no}]
+              [--enable-hard-errors={yes|no}] [--]
+              TEST-SCRIPT [TEST-SCRIPT-ARGUMENTS]
+The '--test-name', '--log-file' and '--trs-file' options are mandatory.
+END
+}
+
+test_name= # Used for reporting.
+log_file=  # Where to save the output of the test script.
+trs_file=  # Where to save the metadata of the test run.
+expect_failure=no
+color_tests=no
+enable_hard_errors=yes
+while test $# -gt 0; do
+  case $1 in
+  --help) print_usage; exit $?;;
+  --version) echo "test-driver $scriptversion"; exit $?;;
+  --test-name) test_name=$2; shift;;
+  --log-file) log_file=$2; shift;;
+  --trs-file) trs_file=$2; shift;;
+  --color-tests) color_tests=$2; shift;;
+  --expect-failure) expect_failure=$2; shift;;
+  --enable-hard-errors) enable_hard_errors=$2; shift;;
+  --) shift; break;;
+  -*) usage_error "invalid option: '$1'";;
+   *) break;;
+  esac
+  shift
+done
+
+missing_opts=
+test x"$test_name" = x && missing_opts="$missing_opts --test-name"
+test x"$log_file"  = x && missing_opts="$missing_opts --log-file"
+test x"$trs_file"  = x && missing_opts="$missing_opts --trs-file"
+if test x"$missing_opts" != x; then
+  usage_error "the following mandatory options are missing:$missing_opts"
+fi
+
+if test $# -eq 0; then
+  usage_error "missing argument"
+fi
+
+if test $color_tests = yes; then
+  # Keep this in sync with 'lib/am/check.am:$(am__tty_colors)'.
+  red='' # Red.
+  grn='' # Green.
+  lgn='' # Light green.
+  blu='' # Blue.
+  mgn='' # Magenta.
+  std=''     # No color.
+else
+  red= grn= lgn= blu= mgn= std=
+fi
+
+do_exit='rm -f $log_file $trs_file; (exit $st); exit $st'
+trap "st=129; $do_exit" 1
+trap "st=130; $do_exit" 2
+trap "st=141; $do_exit" 13
+trap "st=143; $do_exit" 15
+
+# Test script is run here.
+"$@" >$log_file 2>&1
+estatus=$?
+
+if test $enable_hard_errors = no && test $estatus -eq 99; then
+  tweaked_estatus=1
+else
+  tweaked_estatus=$estatus
+fi
+
+case $tweaked_estatus:$expect_failure in
+  0:yes) col=$red res=XPASS recheck=yes gcopy=yes;;
+  0:*)   col=$grn res=PASS  recheck=no  gcopy=no;;
+  77:*)  col=$blu res=SKIP  recheck=no  gcopy=yes;;
+  99:*)  col=$mgn res=ERROR recheck=yes gcopy=yes;;
+  *:yes) col=$lgn res=XFAIL recheck=no  gcopy=yes;;
+  *:*)   col=$red res=FAIL  recheck=yes gcopy=yes;;
+esac
+
+# Report the test outcome and exit status in the logs, so that one can
+# know whether the test passed or failed simply by looking at the '.log'
+# file, without the need of also peaking into the corresponding '.trs'
+# file (automake bug#11814).
+echo "$res $test_name (exit status: $estatus)" >>$log_file
+
+# Report outcome to console.
+echo "${col}${res}${std}: $test_name"
+
+# Register the test result, and other relevant metadata.
+echo ":test-result: $res" > $trs_file
+echo ":global-test-result: $res" >> $trs_file
+echo ":recheck: $recheck" >> $trs_file
+echo ":copy-in-global-log: $gcopy" >> $trs_file
+
+# Local Variables:
+# mode: shell-script
+# sh-indentation: 2
+# eval: (add-hook 'write-file-hooks 'time-stamp)
+# time-stamp-start: "scriptversion="
+# time-stamp-format: "%:y-%02m-%02d.%02H"
+# time-stamp-time-zone: "UTC"
+# time-stamp-end: "; # UTC"
+# End:

bin/timekeeper

@@ -1,129 +0,0 @@
-#!/bin/sh
-##
-# Copyright by The HDF Group.
-# Copyright by the Board of Trustees of the University of Illinois.
-# All rights reserved.
-#
-# This file is part of HDF5.  The full HDF5 copyright notice, including
-# terms governing use, modification, and redistribution, is contained in
-# the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
-# If you do not have access to either file, you may request a copy from
-# help@hdfgroup.org.
-##
-# As a time keeper of the remote daily test process launched by runtest.
-# It sleeps for a certain time and then wakes up to hangup those processes
-# that are still around, assuming they have run too long.
-#
-# Programmer: Albert Cheng
-# Created Date: 2004/12/23
-
-# variable initialization
-waitminutes=300			# default to 5 hours == 300 minutes
-debugtimelimit=
-debugflag=		# no debug
-
-# Function definitions
-#
-# PRINTMSG
-# Print a one line message left justified in a field of 70 characters
-# without newline.  More output for this line later.
-#
-PRINTMSG() {
-    SPACES="                                                               "
-    echo "$* $SPACES" | cut -c1-70 | tr -d '\012'
-}
-
-
-USAGE()
-{
-    echo "Usage: %0 [-h] [-debug] [<time-limit>]"
-    echo "    Run timekeeper with <time-limit> minutes, default is $waitminutes."
-    echo "    If <time-limit> is in the form of HH:MM, it means wait till then."
-    echo "    -h      print this help page"
-    echo "    -debug  run debug mode"
-}
-
-
-ParseOption()
-{
-    if [ $# -gt 0 -a "$1" = -h ]; then
-	shift
-	USAGE
-	exit 0
-    fi
-    if [ $# -gt 0 -a "$1" = -debug ]; then
-	shift
-	debugflag=yes
-	waitminutes=1		# use shorter time for debug
-    fi
-    if [ $# -gt 0 ]; then
-	targettime=$1
-	shift
-
-	# find out it is minutes to wait or HH:MM to wake up
-	case $targettime in
-	*:*)	# HH:MM
-	    currenttime=`date +%H:%M`
-	    currenthour=`echo $currenttime | cut -f1 -d:`
-	    currentminute=`echo $currenttime | cut -f2 -d:`
-	    targethour=`echo $targettime | cut -f1 -d:`
-	    targetminute=`echo $targettime | cut -f2 -d:`
-	    waitminutes=`expr \( $targethour - $currenthour \) \* 60 + $targetminute - $currentminute`
-	    if test $waitminutes -le 0; then
-		# target time is in tomorrow, add 1 day of minutes
-		waitminutes=`expr 24 \* 60 + $waitminutes`
-	    fi
-	    ;;
-	*)
-	    waitminutes=$targettime
-	    ;;
-	esac
-    fi
-}
-
-
-# Main body
-echo "Timekeeper started at `date`"
-ParseOption $*
-waitperiod=`expr $waitminutes \* 60`		# convert to seconds
-
-if [ -z "$debugflag" ]; then
-    # normal time keeping mode
-    # sleep first
-    echo Timekeeper sleeping for $waitperiod seconds
-    sleep $waitperiod
-    # Look for any processes still around
-    echo "Timekeeper woke up at `date`, looking for processes to terminate..."
-    for x in PID.* ; do
-	if [ -f $x ]; then
-	    pid=`cat $x`
-	    # check if process is still around
-	    if test X$pid \!= X && ps -p $pid > /dev/null; then
-		echo "terminating process $x ($pid)"
-		kill -HUP $pid
-		echo "Remote shell command ended.  But some processes might still be"
-		echo "running in the remote machine.  Login there to verify."
-	    fi
-	fi
-    done
-else
-    # Debug mode. Launch two rsh process, one ends before, the other after
-    # waitperiod.  Must launch timekeeper from a subshell, else the debug
-    # will wait for it too.
-    myhostname=`hostname`
-    ( $0 $waitminutes &)
-    debugtimelimit=`expr $waitperiod - 10`
-    echo rsh $myhostname sleep $debugtimelimit
-    rsh $myhostname sleep $debugtimelimit &
-    echo $! > PID.before
-    debugtimelimit=`expr $waitperiod + 10`
-    echo rsh $myhostname sleep $debugtimelimit
-    rsh $myhostname sleep $debugtimelimit &
-    echo $! > PID.after
-
-    wait
-    rm PID.before PID.after
-fi
-
-echo "Timekeeper ended at `date`"

bin/trace

@@ -1,4 +1,4 @@
-#!/usr/bin/perl -w
+#!/usr/bin/env perl
 ##
 # Copyright by The HDF Group.
 # Copyright by the Board of Trustees of the University of Illinois.
@@ -7,11 +7,12 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 ##
 require 5.003;
+use warnings;
 $Source = "";
 
 ##############################################################################
@@ -42,6 +43,7 @@ $Source = "";
                "H5D_space_status_t"         => "Ds",
                "H5D_vds_view_t"             => "Dv",
                "H5FD_mpio_xfer_t"           => "Dt",
+               "H5FD_splitter_vfd_config_t" => "Dr",
                "herr_t"                     => "e",
                "H5E_direction_t"            => "Ed",
                "H5E_error_t"                => "Ee",
@@ -70,6 +72,7 @@ $Source = "";
                "uint32_t"                   => "Iu",
                "uint64_t"                   => "UL",
                "H5I_type_t"                 => "It",
+               "H5O_token_t"                => "k",
                "H5G_link_t"                 => "Ll", #Same as H5L_type_t now
                "H5L_type_t"                 => "Ll",
                "MPI_Comm"                   => "Mc",
@@ -78,7 +81,9 @@ $Source = "";
                "off_t"                      => "o",
                "H5O_type_t"                 => "Ot",
                "H5P_class_t"                => "p",
-               "hobj_ref_t"                 => "r",
+               "hobj_ref_t"                 => "Ro",
+               "hdset_reg_ref_t"            => "Rd",
+               "H5R_ref_t"                  => "Rr",
                "H5R_type_t"                 => "Rt",
                "char"                       => "s",
                "unsigned char"              => "s",
@@ -97,25 +102,38 @@ $Source = "";
                "H5T_str_t"                  => "Tz",
                "unsigned long"              => "Ul",
                "unsigned long long"         => "UL",
+               "H5VL_subclass_t"            => "VS",
+               "H5VL_get_conn_lvl_t"        => "VL",
                "H5VL_attr_get_t"            => "Va",
+               "H5VL_attr_optional_t"       => "Vs",
                "H5VL_attr_specific_t"       => "Vb",
+               "H5VL_blob_specific_t"       => "VB",
                "H5VL_class_value_t"         => "VC",
                "H5VL_dataset_get_t"         => "Vc",
                "H5VL_dataset_specific_t"    => "Vd",
+               "H5VL_dataset_optional_t"    => "Vt",
                "H5VL_datatype_get_t"        => "Ve",
                "H5VL_datatype_specific_t"   => "Vf",
+               "H5VL_datatype_optional_t"   => "Vu",
                "H5VL_file_get_t"            => "Vg",
                "H5VL_file_specific_t"       => "Vh",
+               "H5VL_file_optional_t"       => "Vv",
                "H5VL_group_get_t"           => "Vi",
                "H5VL_group_specific_t"      => "Vj",
+               "H5VL_group_optional_t"      => "Vw",
                "H5VL_link_create_type_t"    => "Vk",
                "H5VL_link_get_t"            => "Vl",
                "H5VL_link_specific_t"       => "Vm",
+               "H5VL_link_optional_t"       => "Vx",
                "H5VL_object_get_t"          => "Vn",
                "H5VL_object_specific_t"     => "Vo",
+               "H5VL_object_optional_t"     => "Vy",
                "H5VL_request_specific_t"    => "Vr",
+               "H5VL_request_optional_t"    => "Vz",
+               "H5VL_blob_optional_t"       => "VA",
                "void"                       => "x",
                "FILE"                       => "x",
+               "H5_alloc_stats_t"           => "x",
                "H5A_operator_t"             => "x",
                "H5A_operator1_t"            => "x",
                "H5A_operator2_t"            => "x",
@@ -142,6 +160,7 @@ $Source = "";
                "H5FD_ros3_fapl_t"           => "x",
                "H5FD_hdfs_fapl_t"           => "x",
                "H5FD_file_image_callbacks_t" => "x",
+               "H5FD_mirror_fapl_t"         => "x",
                "H5G_iterate_t"              => "x",
                "H5G_info_t"                 => "x",
                "H5I_free_t"                 => "x",
@@ -149,12 +168,18 @@ $Source = "";
                "H5I_search_func_t"          => "x",
                "H5L_class_t"                => "x",
                "H5L_elink_traverse_t"       => "x",
-               "H5L_iterate_t"              => "x",
+               "H5L_info1_t"                => "x",
+               "H5L_info2_t"                => "x",
+               "H5L_iterate1_t"             => "x",
+               "H5L_iterate2_t"             => "x",
                "H5M_iterate_t"              => 'x',
                "H5MM_allocate_t"            => "x",
                "H5MM_free_t"                => "x",
-               "H5O_info_t"                 => "x",
-               "H5O_iterate_t"              => "x",
+               "H5O_info1_t"                => "x",
+               "H5O_info2_t"                => "x",
+               "H5O_native_info_t"          => "x",
+               "H5O_iterate1_t"             => "x",
+               "H5O_iterate2_t"             => "x",
                "H5O_mcdt_search_cb_t"       => "x",
                "H5P_cls_create_func_t"      => "x",
                "H5P_cls_copy_func_t"        => "x",
@@ -185,6 +210,14 @@ $Source = "";
                "ssize_t"                    => "Zs",
               );
 
+
+##############################################################################
+# Maximum length of H5TRACE macro line
+# If the ColumnLimit in .clang-format is changed, this value will need to be updated
+#
+my $max_trace_macro_line_len = 110;
+
+
 ##############################################################################
 # Print an error message.
 #
@@ -215,8 +248,15 @@ sub argstring ($$$) {
 
   # Normalize the data type by removing redundant white space,
   # certain type qualifiers, and indirection.
-  $atype =~ s/^\bconst\b//;
+  $atype =~ s/^\bconst\b//;     # Leading const
+  $atype =~ s/\s*const\s*//;    # const after type, possibly in the middle of '*'s
+  $atype =~ s/^\bstatic\b//;
   $atype =~ s/\bH5_ATTR_UNUSED\b//g;
+  $atype =~ s/\bH5_ATTR_DEPRECATED_USED\b//g;
+  $atype =~ s/\bH5_ATTR_NDEBUG_UNUSED\b//g;
+  $atype =~ s/\bH5_ATTR_DEBUG_API_USED\b//g;
+  $atype =~ s/\bH5_ATTR_PARALLEL_UNUSED\b//g;
+  $atype =~ s/\bH5_ATTR_PARALLEL_USED\b//g;
   $atype =~ s/\s+/ /g;
   $ptr = length $1 if  $atype =~ s/(\*+)//;
   $atype =~ s/^\s+//;
@@ -238,7 +278,7 @@ sub argstring ($$$) {
   } else {
     $tstr = $TypeString{$atype};
   }
-  return ("*" x $ptr) . ($array?"[$array]":"") . $tstr;
+  return ("*" x $ptr) . ($array ? "[$array]" : "") . $tstr;
 }
 
 ##############################################################################
@@ -257,7 +297,7 @@ sub rewrite_func ($$$$$) {
 
   # Parse arguments
   if ($args eq "void") {
-    $trace = "H5TRACE0(\"$rettype\",\"\");\n";
+    $trace = "H5TRACE0(\"$rettype\", \"\");\n";
   } else {
     # Split arguments.  First convert `/*in,out*/' to get rid of the
     # comma, then split the arguments on commas.
@@ -267,7 +307,7 @@ sub rewrite_func ($$$$$) {
     my %names;
 
     for $arg (@args) {
-      if($arg=~/\w*\.{3}\w*/){
+      if($arg=~/\w*\.{3}\w*/){  # Skip "..." for varargs parameter
         next;
       }
       unless ($arg=~/^(([a-z_A-Z]\w*\s+)+\**)
@@ -301,18 +341,34 @@ sub rewrite_func ($$$$$) {
         }
       }
     }
+
+    # Compose the trace macro
     $trace = "H5TRACE" . scalar(@arg_str) . "(\"$rettype\", \"";
     $trace .= join("", @arg_str) . "\"";
-    my $len = 4 + length $trace;
+    my $len = 4 + length $trace;        # Add 4, for indenting the line
     for (@arg_name) {
-      if ($len + length >= 77) {
-        $trace .= ",\n             $_";
-        $len = 13 + length;
+      # Wrap lines that will be longer than the limit, after ');' is added
+      if ($len + length >= ($max_trace_macro_line_len - 2)) {
+        # Wrap line, with indention
+        $trace .= ",\n             ";
+        $len = 13;              # Set to 13, for indention
+
+        # Indent an extra space to account for extra digit in 'H5TRACE' macro
+        if (scalar(@arg_str) >= 10) {
+          $trace .= " ";
+          $len++;
+        }
       } else {
-        $trace .= ", $_";
-        $len += 1 + length;
+        $trace .= ", ";
+        $len += 2;     # Add 2, for ', '
       }
+
+      # Append argument
+      $trace .= "$_";
+      $len += length;     # Add length of appended argument name
     }
+
+    # Append final ');' for macro
     $trace .= ");\n";
   }
   goto error if grep {/!/} @arg_str;

bin/warnhist

@@ -1,5 +1,6 @@
-#!/usr/bin/perl -w
+#!/usr/bin/env perl
 require 5.003;
+use warnings;
 
 #
 # Copyright by The HDF Group.
@@ -14,7 +15,7 @@ require 5.003;
 # http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
 # access to either file, you may request a copy from help@hdfgroup.org.
 #
-# Quincey Koziol, koziol@hdfgroup.org
+# Quincey Koziol
 #  9 Aug 2013
 #
 # Purpose: Given an input file containing the output from a build of the
@@ -29,10 +30,13 @@ use Getopt::Std;
 
 # Global variables, for accumulating information
 my $totalcount = 0;
+my $notecount = 0;
+my $dupcount = 0;
 my %warn_count = ();
 my $warncount;
 my %warn_file = ();
 my %warn_file_line = ();
+my %warn_file_line_offset = ();
 my %file_count = ();
 my $filecount;
 my $ignorecount = 0;
@@ -47,10 +51,13 @@ my %file_warn_line = ();
 my $current_warning = 0;
 my $current_file = 0;
 my $warn_index;
+my $genericize = 1;
+
+# Info about last name / line / offset for file
 my $last_c_name;
 my $last_fort_name;
 my $last_fort_line;
-my $genericize = 1;
+my $last_fort_offset;
 
 # Display usage
 sub do_help {
@@ -71,7 +78,7 @@ sub do_help {
     print "\t-S <file string list>\tDisplay warnings for files which contain a string, <file string list>\n";
     print "\t\t<file string list> is a comma separated list, with no spaces\n";
     print "\t\tFor example: 'H5Fint' or 'H5Fint,H5Gnode'\n";
-    print "\t-l\tDisplay line nunbers for file/warning\n";
+    print "\t-l\tDisplay line numbers for file/warning\n";
     print "\t-u\tLeave 'unique' types in warnings, instead of genericizing them\n";
     print "\t-i <name list>\tIgnore named files, <name list>\n";
     print "\t\t<name list> is a comma separated list, with no spaces\n";
@@ -97,7 +104,7 @@ if($options{h}) {
 # Parse list of file names to ignore
 if(exists $options{i}) {
     @ignorenames = split /,/, $options{i};
-#print @ignorenames;
+#print STDERR @ignorenames;
 }
 
 # Parse list of warning indices to expand file names
@@ -105,18 +112,18 @@ if(exists $options{w}) {
     my @tmp_indices;
 
     @tmp_indices = split /,/, $options{w};
-#print @tmp_indices;
+#print STDERR @tmp_indices;
     for my $x (@tmp_indices) {
-#print "x = '$x'\n";
+#print STDERR "x = '$x'\n";
         if($x =~ /\-/) {
             my $start_index;
             my $end_index;
 
-#print "matched = '$x'\n";
+#print STDERR "matched = '$x'\n";
             ($start_index, $end_index) = split /\-/, $x;
-#print "start_index = '$start_index', end_index = '$end_index'\n";
+#print STDERR "start_index = '$start_index', end_index = '$end_index'\n";
             for my $y ($start_index..$end_index) {
-#print "y = '$y'\n";
+#print STDERR "y = '$y'\n";
                 if(!exists $warn_file_indices{$y}) {
                     $warn_file_indices{$y} = $y;
                 }
@@ -129,14 +136,14 @@ if(exists $options{w}) {
         }
     }
 #foreach (sort keys %warn_file_indices) {
-#    print "$_ : $warn_file_indices{$_}\n";
+#    print STDERR "$_ : $warn_file_indices{$_}\n";
 #}
 }
 
 # Parse list of warning strings to expand file names
 if(exists $options{s}) {
     @warn_match_strings = split /,/, $options{s};
-# print @warn_match_strings;
+# print STDERR @warn_match_strings;
 }
 
 # Parse list of file indices to expand warnings
@@ -144,18 +151,18 @@ if(exists $options{f}) {
     my @tmp_indices;
 
     @tmp_indices = split /,/, $options{f};
-#print @tmp_indices;
+#print STDERR @tmp_indices;
     for my $x (@tmp_indices) {
-#print "x = '$x'\n";
+#print STDERR "x = '$x'\n";
         if($x =~ /\-/) {
             my $start_index;
             my $end_index;
 
-#print "matched = '$x'\n";
+#print STDERR "matched = '$x'\n";
             ($start_index, $end_index) = split /\-/, $x;
-#print "start_index = '$start_index', end_index = '$end_index'\n";
+#print STDERR "start_index = '$start_index', end_index = '$end_index'\n";
             for my $y ($start_index..$end_index) {
-#print "y = '$y'\n";
+#print STDERR "y = '$y'\n";
                 if(!exists $file_warn_indices{$y}) {
                     $file_warn_indices{$y} = $y;
                 }
@@ -168,14 +175,14 @@ if(exists $options{f}) {
         }
     }
 #foreach (sort keys %warn_file_indices) {
-#    print "$_ : $warn_file_indices{$_}\n";
+#    print STDERR "$_ : $warn_file_indices{$_}\n";
 #}
 }
 
 # Parse list of warning strings for files to expand warnings
 if(exists $options{S}) {
     @file_match_strings = split /,/, $options{S};
-# print @file_match_strings;
+# print STDERR @file_match_strings;
 }
 
 # Check if warnings should stay unique and not be "genericized"
@@ -196,7 +203,7 @@ while (<>) {
 
     # Retain last FORTRAN compile line, which comes a few lines before warning
     if($_ =~ /.*\.[fF]90:.*/) {
-        ($last_fort_name, $last_fort_line, $toss) = split /\:/, $_;
+        ($last_fort_name, $last_fort_line, $last_fort_offset) = split /\:/, $_;
         ($last_fort_line, $toss) = split /\./, $last_fort_line;
     }
 
@@ -205,44 +212,45 @@ while (<>) {
         ($last_c_name, $toss) = split /\:/, $_;
     }
 
+    # Retain C/C++ compile line, which comes with the line of warning
+    if($_ =~ /.*[A-Za-z0-9_]\.[chC]\(.*[0-9]\):.*#.*/) {
+        $last_c_name = $_;
+    }
+
     # Skip lines that don't have the word "warning"
-    next if $_ !~ /[Ww]arning:/;
+    next if $_ !~ /[Ww]arning/;
 
     # Skip warnings from linker
     next if $_ =~ /ld: warning:/;
 
-    # Skip warnings from build_py and install_lib 
+    # Skip warnings from build_py and install_lib
     next if $_ =~ /warning: (build_py|install_lib)/;
 
+    # Skip variables with the word 'warning' in them
+    next if $_ =~ /_warning_/;
+
     # "Hide" the C++ '::' symbol until we've parsed out the parts of the line
     while($_ =~ /\:\:/) {
 	$_ =~ s/\:\:/@@@@/g;
     }
 
     # Check for weird formatting of warning message
+    $line = "??";
+    $offset = "??";
     if($_ =~ /^cc1: warning:.*/) {
         $name = $last_c_name;
-        $line = "??";
         ($toss, $toss, $warning, $extra, $extra2) = split /\:/, $_;
     # Check for CMAKE build with warning on first line and no filename
     } elsif($_ =~ /^\s*[Ww]arning:.*/) {
         $name = $last_c_name;
-        $line = "??";
         ($toss, $warning, $extra, $extra2) = split /\:/, $_;
     # Check for FORTRAN warning output
     } elsif($_ =~ /^Warning:.*/) {
         $name = $last_fort_name;
         $line = $last_fort_line;
+        $offset = $last_fort_offset;
         ($toss, $warning, $extra, $extra2) = split /\:/, $_;
-#print "1:",$.,":",$_;
-#        $_ = <>;
-#print "2:",$.,":",$_;
-#        if($_ =~ /^\sFC.*/) {
-#            $_ = <>;
-#print "3:",$.,":",$_;
-#        }
-#        ($name, $line, $toss) = split /\:/, $_;
-#print "4:","'",$name,"'","-","'",$line,"'","\n";
+
         # Check for improperly parsed filename or line
         if($name =~ /^$/) {
             print "Filename is a null string! Input line #$. is: '$_'";
@@ -256,11 +264,14 @@ while (<>) {
     } elsif($_ =~ /^\".*, line [0-9]+: *[Ww]arning:.*/) {
         ($name, $toss, $warning, $extra, $extra2) = split /\:/, $_;
         ($name, $line) = split /\,/, $name;
-	$name =~ s/^\"//g;
-	$name =~ s/\"$//g;
-	$line =~ s/^\s*line\s*//g;
-# print "name:'", $name, "'-'", $line, "'\n";
-# print "warning:'", $warning, "'\n";
+	    $name =~ s/^\"//g;
+	    $name =~ s/\"$//g;
+	    $line =~ s/^\s*line\s*//g;
+    # Check for Intel icc warning
+    } elsif($_ =~ /.*[A-Za-z0-9_]\.[chC]\(.*[0-9]\):.*#.*/) {
+        ($last_c_name, $toss, $warning) = split /\:/, $last_c_name;
+        ($name, $line) = split /\(/, $last_c_name;
+        $line =~ s/\)//g;
     } else {
         # Check for 'character offset' field appended to file & line #
 	# (This is probably specific to GCC)
@@ -299,9 +310,7 @@ while (<>) {
     # Check for ignored file
     if(exists $options{i}) {
         for my $x (@ignorenames) {
-#print "x = '$x'\n";
             if($name =~ /$x/) {
-# print "matched name = '$name'\n";
                 $ignorecount++;
                 if(!(exists $ignored_files{$name})) {
                     $ignored_files{$name} = $name;
@@ -330,18 +339,28 @@ while (<>) {
     # Convert all quotes to '
     $warning =~ s/‘/'/g;
     $warning =~ s/’/'/g;
+    $warning =~ s/"/'/g;
 
 #
 # These skipped messages & "genericizations" may be specific to GCC
 
     # Skip supplemental warning message
-    next if $warning =~ /near initialization for/;
+    if($warning =~ /near initialization for/) {
+	$notecount++;
+        next
+    }
 
     # Skip C++ supplemental warning message
-    next if $warning =~ /in call to/;
+    if($warning =~ /in call to/) {
+	$notecount++;
+        next
+    }
 
     # Skip GCC warning that should be a note
-    next if $_ =~ /\(this will be reported only once per input file\)/;
+    if($_ =~ /\(this will be reported only once per input file\)/) {
+	$notecount++;
+        next
+    }
 
     if($genericize) {
 	# Eliminate C/C++ "{aka <some type>}" and "{aka '<some type>'}" info
@@ -390,16 +409,16 @@ while (<>) {
 	    $warning =~ s/[A-Za-z_0-9]*\([A-Za-z_,0-9]*\) in [A-Za-z_0-9]*/-\(-\) in -/g;
 	}
     }
-# print "warning = $warning\n";
 # <end possible GCC-specific code>
 
     # Check if we've already seen this warning on this line in this file
     # (Can happen for warnings from inside header files)
-    if( !exists $warn_file_line{$warning}{$name}{$line} ) {
+    if( !exists $warn_file_line_offset{$warning}{$name}{$line}{$offset} ) {
 	# Increment count for [generic] warning
 	$warn_count{$warning}++;
 	$warn_file{$warning}{$name}++;
 	$warn_file_line{$warning}{$name}{$line}++;
+	$warn_file_line_offset{$warning}{$name}{$line}{$offset}++;
 
 	# Increment count for filename
 	$file_count{$name}++;
@@ -409,14 +428,20 @@ while (<>) {
 	# Increment total count of warnings
 	$totalcount++;
     }
+    else {
+	# Increment count of duplicate warnings
+	$dupcount++;
+    }
 
-#    print "name = $name\n";
-#    print "line = $line\n";
-#    print "offset = $offset\n";
-#    print "warning = \"$warning\"\n";
+#    print STDERR "name = $name\n";
+#    print STDERR "line = $line\n";
+#    print STDERR "offset = $offset\n";
+#    print STDERR "warning = \"$warning\"\n";
 }
 
 print "Total unique [non-ignored] warnings: $totalcount\n";
+print "Ignored notes / supplemental warning lines [not counted in unique warnings]: $notecount\n";
+print "Duplicated warning lines [not counted in unique warnings]: $dupcount\n";
 print "Total ignored warnings: $ignorecount\n";
 $warncount = keys %warn_count;
 print "Total unique kinds of warnings: $warncount\n";
@@ -427,7 +452,7 @@ print "Total files with warnings: $filecount\n\n";
 print "# of Warnings by frequency (file count)\n";
 print "=======================================\n";
 for my $x (sort {$warn_count{$b} <=> $warn_count{$a}} keys(%warn_count)) {
-    printf ("[%2d] %4d (%2d) - %s\n", $current_warning++, $warn_count{$x}, scalar(keys %{$warn_file_line{$x}}), $x);
+    printf ("[%2d] %4d (%2d) - %s\n", $current_warning++, $warn_count{$x}, scalar(keys %{$warn_file{$x}}), $x);
     if((exists $options{W}) || (exists $options{w}) || (exists $options{s})) {
         my $curr_index = $current_warning - 1;
 	my $match = 0;
@@ -435,9 +460,9 @@ for my $x (sort {$warn_count{$b} <=> $warn_count{$a}} keys(%warn_count)) {
 	# Check for string from list in current warning
 	if(exists $options{s}) {
 	    for my $y (@warn_match_strings) {
-# print "y = '$y'\n";
+# print STDERR "y = '$y'\n";
 		if($x =~ /$y/) {
-# print "matched warning = '$x'\n";
+# print STDERR "matched warning = '$x'\n";
 		    $match = 1;
 		    last;
 		}
@@ -465,7 +490,7 @@ for my $x (sort {$warn_count{$b} <=> $warn_count{$a}} keys(%warn_count)) {
 print "\n# of Warnings by filename (warning type)\n";
 print   "========================================\n";
 for my $x (sort {$file_count{$b} <=> $file_count{$a}} keys(%file_count)) {
-    printf ("[%3d] %4d (%2d) - %s\n", $current_file++, $file_count{$x}, scalar(keys %{$file_warn_line{$x}}), $x);
+    printf ("[%3d] %4d (%2d) - %s\n", $current_file++, $file_count{$x}, scalar(keys %{$file_warn{$x}}), $x);
     if((exists $options{F}) || (exists $options{f}) || (exists $options{S})) {
         my $curr_index = $current_file - 1;
 	my $match = 0;
@@ -473,9 +498,9 @@ for my $x (sort {$file_count{$b} <=> $file_count{$a}} keys(%file_count)) {
 	# Check for string from list in current file
 	if(exists $options{S}) {
 	    for my $y (@file_match_strings) {
-# print "y = '$y'\n";
+# print STDERR "y = '$y'\n";
 		if($x =~ /$y/) {
-# print "matched warning = '$x'\n";
+# print STDERR "matched warning = '$x'\n";
 		    $match = 1;
 		    last;
 		}

bin/yodconfigure

@@ -7,7 +7,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #

c++/CMakeLists.txt

@@ -1,4 +1,4 @@
-cmake_minimum_required (VERSION 3.10)
+cmake_minimum_required (VERSION 3.12)
 project (HDF5_CPP CXX)
 
 add_subdirectory (src)

c++/COPYING

@@ -1,13 +0,0 @@
-
-  Copyright by  The HDF Group and 
-                The Board of Trustees of the University of Illinois. 
-  All rights reserved. 
-
-  The files and subdirectories in this directory are part of HDF5.  
-  The full HDF5 copyright notice, including terms governing use, 
-  modification, and redistribution, is contained in the COPYING file
-  which can be found at the root of the source code distribution tree
-  or in https://support.hdfgroup.org/ftp/HDF5/releases.  If you do
-  not have access to either file, you may request a copy from 
-  help@hdfgroup.org. 
-

c++/Makefile.am

@@ -6,7 +6,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 ##
@@ -14,7 +14,7 @@
 ## Run automake to generate a Makefile.in from this file.
 #
 # Top-level HDF5-C++ Makefile(.in)
-# 
+#
 
 include $(top_srcdir)/config/commence.am
 

c++/examples/CMakeLists.txt

@@ -1,4 +1,4 @@
-cmake_minimum_required (VERSION 3.10)
+cmake_minimum_required (VERSION 3.12)
 project (HDF5_CPP_EXAMPLES CXX)
 
 # --------------------------------------------------------------------
@@ -34,40 +34,54 @@ set (tutr_examples
 
 foreach (example ${examples})
   add_executable (cpp_ex_${example} ${HDF5_CPP_EXAMPLES_SOURCE_DIR}/${example}.cpp)
-  target_include_directories (cpp_ex_${example} PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+  target_include_directories (cpp_ex_${example} PRIVATE "${HDF5_SRC_DIR};${HDF5_SRC_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
   if (NOT BUILD_SHARED_LIBS)
     TARGET_C_PROPERTIES (cpp_ex_${example} STATIC)
     target_link_libraries (cpp_ex_${example} PRIVATE ${HDF5_CPP_LIB_TARGET} ${HDF5_LIB_TARGET})
   else ()
     TARGET_C_PROPERTIES (cpp_ex_${example} SHARED)
     target_link_libraries (cpp_ex_${example} PRIVATE ${HDF5_CPP_LIBSH_TARGET} ${HDF5_LIBSH_TARGET})
-    if (MINGW)
+    if (MINGW AND HDF5_MINGW_STATIC_GCC_LIBS)
       target_link_options (${HDF5_CPP_LIBSH_TARGET}
           PRIVATE -static-libgcc -static-libstdc++
       )
     endif ()
   endif ()
   set_target_properties (cpp_ex_${example} PROPERTIES FOLDER examples/cpp)
+
+  #-----------------------------------------------------------------------------
+  # Add Target to clang-format
+  #-----------------------------------------------------------------------------
+  if (HDF5_ENABLE_FORMATTERS)
+    clang_format (HDF5_CPP_EXAMPLES_${example}_FORMAT cpp_ex_${example})
+  endif ()
 endforeach ()
 
 foreach (example ${tutr_examples})
   add_executable (cpp_ex_${example} ${HDF5_CPP_EXAMPLES_SOURCE_DIR}/${example}.cpp)
-  target_include_directories (cpp_ex_${example} PRIVATE "${HDF5_SRC_DIR};${HDF5_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
+  target_include_directories (cpp_ex_${example} PRIVATE "${HDF5_SRC_DIR};${HDF5_SRC_BINARY_DIR};$<$<BOOL:${HDF5_ENABLE_PARALLEL}>:${MPI_C_INCLUDE_DIRS}>")
   if (NOT BUILD_SHARED_LIBS)
     TARGET_C_PROPERTIES (cpp_ex_${example} STATIC)
     target_link_libraries (cpp_ex_${example} PRIVATE ${HDF5_CPP_LIB_TARGET} ${HDF5_LIB_TARGET})
   else ()
     TARGET_C_PROPERTIES (cpp_ex_${example} SHARED)
     target_link_libraries (cpp_ex_${example} PRIVATE ${HDF5_CPP_LIBSH_TARGET} ${HDF5_LIBSH_TARGET})
-    if (MINGW)
+    if (MINGW AND HDF5_MINGW_STATIC_GCC_LIBS)
       target_link_options (${HDF5_CPP_LIBSH_TARGET}
           PRIVATE -static-libgcc -static-libstdc++
       )
     endif ()
   endif ()
   set_target_properties (cpp_ex_${example} PROPERTIES FOLDER examples/cpp)
+
+  #-----------------------------------------------------------------------------
+  # Add Target to clang-format
+  #-----------------------------------------------------------------------------
+  if (HDF5_ENABLE_FORMATTERS)
+    clang_format (HDF5_CPP_EXAMPLES_${example}_FORMAT cpp_ex_${example})
+  endif ()
 endforeach ()
 
-if (BUILD_TESTING)
+if (BUILD_TESTING AND HDF5_TEST_CPP AND HDF5_TEST_EXAMPLES AND HDF5_TEST_SERIAL)
   include (CMakeTests.cmake)
 endif ()

c++/examples/CMakeTests.cmake

@@ -5,7 +5,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #

c++/examples/Makefile.am

@@ -6,7 +6,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 ##
@@ -49,8 +49,8 @@ CXX_API=yes
 
 # Where to install examples
 # Note: no '/' after DESTDIR.  Explanation in commence.am
-EXAMPLEDIR=${DESTDIR}$(exec_prefix)/share/hdf5_examples/c++
-EXAMPLETOPDIR=${DESTDIR}$(exec_prefix)/share/hdf5_examples
+EXAMPLEDIR=${DESTDIR}$(examplesdir)/c++
+EXAMPLETOPDIR=${DESTDIR}$(examplesdir)
 
 # How to build programs using h5c++
 $(EXTRA_PROG): $(H5CPP)

c++/examples/chunks.cpp

@@ -6,7 +6,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
@@ -16,11 +16,7 @@
  *   We will read from the file created by extend.cpp
  */
 
-#ifdef OLD_HEADER_FILENAME
-#include <iostream.h>
-#else
 #include <iostream>
-#endif
 using std::cout;
 using std::endl;
 
@@ -28,20 +24,20 @@ using std::endl;
 #include "H5Cpp.h"
 using namespace H5;
 
-const H5std_string FILE_NAME( "SDSextendible.h5" );
-const H5std_string DATASET_NAME( "ExtendibleArray" );
-const int      NX = 10;
-const int      NY = 5;
-const int      RANK = 2;
-const int      RANKC = 1;
+const H5std_string FILE_NAME("SDSextendible.h5");
+const H5std_string DATASET_NAME("ExtendibleArray");
+const int          NX    = 10;
+const int          NY    = 5;
+const int          RANK  = 2;
+const int          RANKC = 1;
 
-int main (void)
+int
+main(void)
 {
-    hsize_t     i, j;
+    hsize_t i, j;
 
     // Try block to detect exceptions raised by any of the calls inside it
-    try
-    {
+    try {
         /*
          * Turn off the auto-printing when failure occurs so that we can
          * handle the errors appropriately
@@ -51,8 +47,8 @@ int main (void)
         /*
          * Open the file and the dataset.
          */
-        H5File file( FILE_NAME, H5F_ACC_RDONLY );
-        DataSet dataset = file.openDataSet( DATASET_NAME );
+        H5File  file(FILE_NAME, H5F_ACC_RDONLY);
+        DataSet dataset = file.openDataSet(DATASET_NAME);
 
         /*
          * Get filespace for rank and dimension
@@ -67,10 +63,9 @@ int main (void)
         /*
          * Get and print the dimension sizes of the file dataspace
          */
-        hsize_t dims[2];        // dataset dimensions
-        rank = filespace.getSimpleExtentDims( dims );
-        cout << "dataset rank = " << rank << ", dimensions "
-             << (unsigned long)(dims[0]) << " x "
+        hsize_t dims[2]; // dataset dimensions
+        rank = filespace.getSimpleExtentDims(dims);
+        cout << "dataset rank = " << rank << ", dimensions " << (unsigned long)(dims[0]) << " x "
              << (unsigned long)(dims[1]) << endl;
 
         /*
@@ -81,13 +76,12 @@ int main (void)
         /*
          * Read dataset back and display.
          */
-        int data_out[NX][NY];  // buffer for dataset to be read
-        dataset.read( data_out, PredType::NATIVE_INT, mspace1, filespace );
+        int data_out[NX][NY]; // buffer for dataset to be read
+        dataset.read(data_out, PredType::NATIVE_INT, mspace1, filespace);
 
         cout << "\n";
         cout << "Dataset: \n";
-        for (j = 0; j < dims[0]; j++)
-        {
+        for (j = 0; j < dims[0]; j++) {
             for (i = 0; i < dims[1]; i++)
                 cout << data_out[j][i] << " ";
             cout << endl;
@@ -117,20 +111,20 @@ int main (void)
          */
         hsize_t col_dims[1];
         col_dims[0] = 10;
-        DataSpace mspace2( RANKC, col_dims );
+        DataSpace mspace2(RANKC, col_dims);
 
         /*
          * Define the column (hyperslab) to read.
          */
-        hsize_t offset[2] = { 0, 2 };
-        hsize_t  count[2] = { 10, 1 };
-        int column[10];  // buffer for column to be read
+        hsize_t offset[2] = {0, 2};
+        hsize_t count[2]  = {10, 1};
+        int     column[10]; // buffer for column to be read
 
         /*
          * Define hyperslab and read.
          */
-        filespace.selectHyperslab( H5S_SELECT_SET, count, offset );
-        dataset.read( column, PredType::NATIVE_INT, mspace2, filespace );
+        filespace.selectHyperslab(H5S_SELECT_SET, count, offset);
+        dataset.read(column, PredType::NATIVE_INT, mspace2, filespace);
 
         cout << endl;
         cout << "Third column: " << endl;
@@ -161,20 +155,18 @@ int main (void)
          */
         hsize_t chunk_dims[2];
         int     rank_chunk;
-        if( H5D_CHUNKED == cparms.getLayout() )
-        {
+        if (H5D_CHUNKED == cparms.getLayout()) {
             /*
              * Get chunking information: rank and dimensions
              */
-            rank_chunk = cparms.getChunk( 2, chunk_dims);
-            cout << "chunk rank " << rank_chunk << "dimensions "
-                << (unsigned long)(chunk_dims[0]) << " x "
-                << (unsigned long)(chunk_dims[1]) << endl;
+            rank_chunk = cparms.getChunk(2, chunk_dims);
+            cout << "chunk rank " << rank_chunk << "dimensions " << (unsigned long)(chunk_dims[0]) << " x "
+                 << (unsigned long)(chunk_dims[1]) << endl;
 
             /*
              * Define the memory space to read a chunk.
              */
-            DataSpace mspace3( rank_chunk, chunk_dims );
+            DataSpace mspace3(rank_chunk, chunk_dims);
 
             /*
              * Define chunk in the file (hyperslab) to read.
@@ -183,17 +175,16 @@ int main (void)
             offset[1] = 0;
             count[0]  = chunk_dims[0];
             count[1]  = chunk_dims[1];
-            filespace.selectHyperslab( H5S_SELECT_SET, count, offset );
+            filespace.selectHyperslab(H5S_SELECT_SET, count, offset);
 
             /*
              * Read chunk back and display.
              */
-            int chunk_out[2][5];   // buffer for chunk to be read
-            dataset.read( chunk_out, PredType::NATIVE_INT, mspace3, filespace );
+            int chunk_out[2][5]; // buffer for chunk to be read
+            dataset.read(chunk_out, PredType::NATIVE_INT, mspace3, filespace);
             cout << endl;
             cout << "Chunk:" << endl;
-            for (j = 0; j < chunk_dims[0]; j++)
-            {
+            for (j = 0; j < chunk_dims[0]; j++) {
                 for (i = 0; i < chunk_dims[1]; i++)
                     cout << chunk_out[j][i] << " ";
                 cout << endl;
@@ -204,25 +195,22 @@ int main (void)
              *   2 0 0 0 0
              */
         }
-    }  // end of try block
+    } // end of try block
 
     // catch failure caused by the H5File operations
-    catch( FileIException error )
-    {
+    catch (FileIException error) {
         error.printErrorStack();
         return -1;
     }
 
     // catch failure caused by the DataSet operations
-    catch( DataSetIException error )
-    {
+    catch (DataSetIException error) {
         error.printErrorStack();
         return -1;
     }
 
     // catch failure caused by the DataSpace operations
-    catch( DataSpaceIException error )
-    {
+    catch (DataSpaceIException error) {
         error.printErrorStack();
         return -1;
     }

c++/examples/compound.cpp

@@ -6,7 +6,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
@@ -17,11 +17,7 @@
  * and read back fields' subsets.
  */
 
-#ifdef OLD_HEADER_FILENAME
-#include <iostream.h>
-#else
 #include <iostream>
-#endif
 using std::cout;
 using std::endl;
 
@@ -29,175 +25,170 @@ using std::endl;
 #include "H5Cpp.h"
 using namespace H5;
 
-const H5std_string FILE_NAME( "SDScompound.h5" );
-const H5std_string DATASET_NAME( "ArrayOfStructures" );
-const H5std_string MEMBER1( "a_name" );
-const H5std_string MEMBER2( "b_name" );
-const H5std_string MEMBER3( "c_name" );
-const int   LENGTH = 10;
-const int   RANK = 1;
+const H5std_string FILE_NAME("SDScompound.h5");
+const H5std_string DATASET_NAME("ArrayOfStructures");
+const H5std_string MEMBER1("a_name");
+const H5std_string MEMBER2("b_name");
+const H5std_string MEMBER3("c_name");
+const int          LENGTH = 10;
+const int          RANK   = 1;
 
-int main(void)
+int
+main(void)
 {
-   /* First structure  and dataset*/
-   typedef struct s1_t {
+    /* First structure  and dataset*/
+    typedef struct s1_t {
         int    a;
         float  b;
         double c;
-   } s1_t;
+    } s1_t;
 
-   /* Second structure (subset of s1_t)  and dataset*/
-   typedef struct s2_t {
+    /* Second structure (subset of s1_t)  and dataset*/
+    typedef struct s2_t {
         double c;
         int    a;
-   } s2_t;
+    } s2_t;
 
-   // Try block to detect exceptions raised by any of the calls inside it
-   try
-   {
-      /*
-       * Initialize the data
-       */
-      int  i;
-      s1_t s1[LENGTH];
-      for (i = 0; i< LENGTH; i++)
-      {
-         s1[i].a = i;
-         s1[i].b = i*i;
-         s1[i].c = 1./(i+1);
-      }
+    // Try block to detect exceptions raised by any of the calls inside it
+    try {
+        /*
+         * Initialize the data
+         */
+        int  i;
+        s1_t s1[LENGTH];
+        for (i = 0; i < LENGTH; i++) {
+            s1[i].a = i;
+            s1[i].b = i * i;
+            s1[i].c = 1. / (i + 1);
+        }
 
-      /*
-       * Turn off the auto-printing when failure occurs so that we can
-       * handle the errors appropriately
-       */
-      Exception::dontPrint();
+        /*
+         * Turn off the auto-printing when failure occurs so that we can
+         * handle the errors appropriately
+         */
+        Exception::dontPrint();
 
-      /*
-       * Create the data space.
-       */
-      hsize_t dim[] = {LENGTH};   /* Dataspace dimensions */
-      DataSpace space( RANK, dim );
+        /*
+         * Create the data space.
+         */
+        hsize_t   dim[] = {LENGTH}; /* Dataspace dimensions */
+        DataSpace space(RANK, dim);
 
-      /*
-       * Create the file.
-       */
-      H5File* file = new H5File( FILE_NAME, H5F_ACC_TRUNC );
+        /*
+         * Create the file.
+         */
+        H5File *file = new H5File(FILE_NAME, H5F_ACC_TRUNC);
 
-      /*
-       * Create the memory datatype.
-       */
-      CompType mtype1( sizeof(s1_t) );
-      mtype1.insertMember( MEMBER1, HOFFSET(s1_t, a), PredType::NATIVE_INT);
-      mtype1.insertMember( MEMBER3, HOFFSET(s1_t, c), PredType::NATIVE_DOUBLE);
-      mtype1.insertMember( MEMBER2, HOFFSET(s1_t, b), PredType::NATIVE_FLOAT);
+        /*
+         * Create the memory datatype.
+         */
+        CompType mtype1(sizeof(s1_t));
+        mtype1.insertMember(MEMBER1, HOFFSET(s1_t, a), PredType::NATIVE_INT);
+        mtype1.insertMember(MEMBER3, HOFFSET(s1_t, c), PredType::NATIVE_DOUBLE);
+        mtype1.insertMember(MEMBER2, HOFFSET(s1_t, b), PredType::NATIVE_FLOAT);
 
-      /*
-       * Create the dataset.
-       */
-      DataSet* dataset;
-      dataset = new DataSet(file->createDataSet(DATASET_NAME, mtype1, space));
+        /*
+         * Create the dataset.
+         */
+        DataSet *dataset;
+        dataset = new DataSet(file->createDataSet(DATASET_NAME, mtype1, space));
 
-      /*
-       * Write data to the dataset;
-       */
-      dataset->write( s1, mtype1 );
+        /*
+         * Write data to the dataset;
+         */
+        dataset->write(s1, mtype1);
 
-      /*
-       * Release resources
-       */
-      delete dataset;
-      delete file;
+        /*
+         * Release resources
+         */
+        delete dataset;
+        delete file;
 
-      /*
-       * Open the file and the dataset.
-       */
-      file = new H5File( FILE_NAME, H5F_ACC_RDONLY );
-      dataset = new DataSet (file->openDataSet( DATASET_NAME ));
+        /*
+         * Open the file and the dataset.
+         */
+        file    = new H5File(FILE_NAME, H5F_ACC_RDONLY);
+        dataset = new DataSet(file->openDataSet(DATASET_NAME));
 
-      /*
-       * Create a datatype for s2
-       */
-      CompType mtype2( sizeof(s2_t) );
+        /*
+         * Create a datatype for s2
+         */
+        CompType mtype2(sizeof(s2_t));
 
-      mtype2.insertMember( MEMBER3, HOFFSET(s2_t, c), PredType::NATIVE_DOUBLE);
-      mtype2.insertMember( MEMBER1, HOFFSET(s2_t, a), PredType::NATIVE_INT);
+        mtype2.insertMember(MEMBER3, HOFFSET(s2_t, c), PredType::NATIVE_DOUBLE);
+        mtype2.insertMember(MEMBER1, HOFFSET(s2_t, a), PredType::NATIVE_INT);
 
-      /*
-       * Read two fields c and a from s1 dataset. Fields in the file
-       * are found by their names "c_name" and "a_name".
-       */
-      s2_t s2[LENGTH];
-      dataset->read( s2, mtype2 );
+        /*
+         * Read two fields c and a from s1 dataset. Fields in the file
+         * are found by their names "c_name" and "a_name".
+         */
+        s2_t s2[LENGTH];
+        dataset->read(s2, mtype2);
 
-      /*
-       * Display the fields
-       */
-      cout << endl << "Field c : " << endl;
-      for( i = 0; i < LENGTH; i++)
-         cout << s2[i].c << " ";
-      cout << endl;
+        /*
+         * Display the fields
+         */
+        cout << endl << "Field c : " << endl;
+        for (i = 0; i < LENGTH; i++)
+            cout << s2[i].c << " ";
+        cout << endl;
 
-      cout << endl << "Field a : " << endl;
-      for( i = 0; i < LENGTH; i++)
-         cout << s2[i].a << " ";
-      cout << endl;
+        cout << endl << "Field a : " << endl;
+        for (i = 0; i < LENGTH; i++)
+            cout << s2[i].a << " ";
+        cout << endl;
 
-      /*
-       * Create a datatype for s3.
-       */
-      CompType mtype3( sizeof(float) );
+        /*
+         * Create a datatype for s3.
+         */
+        CompType mtype3(sizeof(float));
 
-      mtype3.insertMember( MEMBER2, 0, PredType::NATIVE_FLOAT);
+        mtype3.insertMember(MEMBER2, 0, PredType::NATIVE_FLOAT);
 
-      /*
-       * Read field b from s1 dataset. Field in the file is found by its name.
-       */
-      float s3[LENGTH];  // Third "structure" - used to read float field of s1
-      dataset->read( s3, mtype3 );
+        /*
+         * Read field b from s1 dataset. Field in the file is found by its name.
+         */
+        float s3[LENGTH]; // Third "structure" - used to read float field of s1
+        dataset->read(s3, mtype3);
 
-      /*
-       * Display the field
-       */
-      cout << endl << "Field b : " << endl;
-      for( i = 0; i < LENGTH; i++)
-         cout << s3[i] << " ";
-      cout << endl;
+        /*
+         * Display the field
+         */
+        cout << endl << "Field b : " << endl;
+        for (i = 0; i < LENGTH; i++)
+            cout << s3[i] << " ";
+        cout << endl;
 
-      /*
-       * Release resources
-       */
-      delete dataset;
-      delete file;
-   }  // end of try block
+        /*
+         * Release resources
+         */
+        delete dataset;
+        delete file;
+    } // end of try block
 
-   // catch failure caused by the H5File operations
-   catch( FileIException error )
-   {
-      error.printErrorStack();
-      return -1;
-   }
+    // catch failure caused by the H5File operations
+    catch (FileIException error) {
+        error.printErrorStack();
+        return -1;
+    }
 
-   // catch failure caused by the DataSet operations
-   catch( DataSetIException error )
-   {
-      error.printErrorStack();
-      return -1;
-   }
+    // catch failure caused by the DataSet operations
+    catch (DataSetIException error) {
+        error.printErrorStack();
+        return -1;
+    }
 
-   // catch failure caused by the DataSpace operations
-   catch( DataSpaceIException error )
-   {
-      error.printErrorStack();
-      return -1;
-   }
+    // catch failure caused by the DataSpace operations
+    catch (DataSpaceIException error) {
+        error.printErrorStack();
+        return -1;
+    }
 
-   // catch failure caused by the DataSpace operations
-   catch( DataTypeIException error )
-   {
-      error.printErrorStack();
-      return -1;
-   }
+    // catch failure caused by the DataSpace operations
+    catch (DataTypeIException error) {
+        error.printErrorStack();
+        return -1;
+    }
 
-   return 0;
+    return 0;
 }

c++/examples/create.cpp

@@ -6,7 +6,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
@@ -15,115 +15,105 @@
  *  This example writes a dataset to a new HDF5 file.
  */
 
-#ifdef OLD_HEADER_FILENAME
-#include <iostream.h>
-#else
 #include <iostream>
-#endif
 
 #include <string>
 #include "H5Cpp.h"
 using namespace H5;
 
-const H5std_string      FILE_NAME( "SDS.h5" );
-const H5std_string      DATASET_NAME( "IntArray" );
-const int       NX = 5;                    // dataset dimensions
-const int       NY = 6;
-const int       RANK = 2;
+const H5std_string FILE_NAME("SDS.h5");
+const H5std_string DATASET_NAME("IntArray");
+const int          NX   = 5; // dataset dimensions
+const int          NY   = 6;
+const int          RANK = 2;
 
-int main (void)
+int
+main(void)
 {
-   /*
-    * Data initialization.
-    */
-   int i, j;
-   int data[NX][NY];          // buffer for data to write
-   for (j = 0; j < NX; j++)
-   {
-      for (i = 0; i < NY; i++)
-         data[j][i] = i + j;
-   }
-   /*
-    * 0 1 2 3 4 5
-    * 1 2 3 4 5 6
-    * 2 3 4 5 6 7
-    * 3 4 5 6 7 8
-    * 4 5 6 7 8 9
-    */
+    /*
+     * Data initialization.
+     */
+    int i, j;
+    int data[NX][NY]; // buffer for data to write
+    for (j = 0; j < NX; j++) {
+        for (i = 0; i < NY; i++)
+            data[j][i] = i + j;
+    }
+    /*
+     * 0 1 2 3 4 5
+     * 1 2 3 4 5 6
+     * 2 3 4 5 6 7
+     * 3 4 5 6 7 8
+     * 4 5 6 7 8 9
+     */
 
-   // Try block to detect exceptions raised by any of the calls inside it
-   try
-   {
-      /*
-       * Turn off the auto-printing when failure occurs so that we can
-       * handle the errors appropriately
-       */
-      Exception::dontPrint();
+    // Try block to detect exceptions raised by any of the calls inside it
+    try {
+        /*
+         * Turn off the auto-printing when failure occurs so that we can
+         * handle the errors appropriately
+         */
+        Exception::dontPrint();
 
-      /*
-       * Create a new file using H5F_ACC_TRUNC access,
-       * default file creation properties, and default file
-       * access properties.
-       */
-      H5File file( FILE_NAME, H5F_ACC_TRUNC );
+        /*
+         * Create a new file using H5F_ACC_TRUNC access,
+         * default file creation properties, and default file
+         * access properties.
+         */
+        H5File file(FILE_NAME, H5F_ACC_TRUNC);
 
-      /*
-       * Define the size of the array and create the data space for fixed
-       * size dataset.
-       */
-      hsize_t     dimsf[2];              // dataset dimensions
-      dimsf[0] = NX;
-      dimsf[1] = NY;
-      DataSpace dataspace( RANK, dimsf );
+        /*
+         * Define the size of the array and create the data space for fixed
+         * size dataset.
+         */
+        hsize_t dimsf[2]; // dataset dimensions
+        dimsf[0] = NX;
+        dimsf[1] = NY;
+        DataSpace dataspace(RANK, dimsf);
 
-      /*
-       * Define datatype for the data in the file.
-       * We will store little endian INT numbers.
-       */
-      IntType datatype( PredType::NATIVE_INT );
-      datatype.setOrder( H5T_ORDER_LE );
+        /*
+         * Define datatype for the data in the file.
+         * We will store little endian INT numbers.
+         */
+        IntType datatype(PredType::NATIVE_INT);
+        datatype.setOrder(H5T_ORDER_LE);
 
-      /*
-       * Create a new dataset within the file using defined dataspace and
-       * datatype and default dataset creation properties.
-       */
-      DataSet dataset = file.createDataSet( DATASET_NAME, datatype, dataspace );
+        /*
+         * Create a new dataset within the file using defined dataspace and
+         * datatype and default dataset creation properties.
+         */
+        DataSet dataset = file.createDataSet(DATASET_NAME, datatype, dataspace);
 
-      /*
-       * Write the data to the dataset using default memory space, file
-       * space, and transfer properties.
-       */
-      dataset.write( data, PredType::NATIVE_INT );
-   }  // end of try block
+        /*
+         * Write the data to the dataset using default memory space, file
+         * space, and transfer properties.
+         */
+        dataset.write(data, PredType::NATIVE_INT);
+    } // end of try block
 
-   // catch failure caused by the H5File operations
-   catch( FileIException error )
-   {
-      error.printErrorStack();
-      return -1;
-   }
+    // catch failure caused by the H5File operations
+    catch (FileIException error) {
+        error.printErrorStack();
+        return -1;
+    }
 
-   // catch failure caused by the DataSet operations
-   catch( DataSetIException error )
-   {
-      error.printErrorStack();
-      return -1;
-   }
+    // catch failure caused by the DataSet operations
+    catch (DataSetIException error) {
+        error.printErrorStack();
+        return -1;
+    }
 
-   // catch failure caused by the DataSpace operations
-   catch( DataSpaceIException error )
-   {
-      error.printErrorStack();
-      return -1;
-   }
+    // catch failure caused by the DataSpace operations
+    catch (DataSpaceIException error) {
+        error.printErrorStack();
+        return -1;
+    }
 
-   // catch failure caused by the DataSpace operations
-   catch( DataTypeIException error )
-   {
-      error.printErrorStack();
-      return -1;
-   }
+    // catch failure caused by the DataSpace operations
+    catch (DataTypeIException error) {
+        error.printErrorStack();
+        return -1;
+    }
 
-   return 0;  // successfully terminated
+    return 0; // successfully terminated
 }
-

c++/examples/extend_ds.cpp

@@ -6,7 +6,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
@@ -18,11 +18,7 @@
  *
  */
 
-#ifdef OLD_HEADER_FILENAME
-#include <iostream.h>
-#else
 #include <iostream>
-#endif
 #include <string>
 
 using std::cout;
@@ -32,201 +28,195 @@ using std::endl;
 #include "H5Cpp.h"
 using namespace H5;
 
-const H5std_string FILE_NAME( "SDSextendible.h5" );
-const H5std_string DATASET_NAME( "ExtendibleArray" );
-const int      NX = 10;
-const int      NY = 5;
-const int      RANK = 2;
+const H5std_string FILE_NAME("SDSextendible.h5");
+const H5std_string DATASET_NAME("ExtendibleArray");
+const int          NX   = 10;
+const int          NY   = 5;
+const int          RANK = 2;
 
-int main (void)
+int
+main(void)
 {
-   /*
-    * Try block to detect exceptions raised by any of the calls inside it
-    */
-   try
-   {
-      /*
-       * Turn off the auto-printing when failure occurs so that we can
-       * handle the errors appropriately
-       */
-      Exception::dontPrint();
+    /*
+     * Try block to detect exceptions raised by any of the calls inside it
+     */
+    try {
+        /*
+         * Turn off the auto-printing when failure occurs so that we can
+         * handle the errors appropriately
+         */
+        Exception::dontPrint();
 
-      /*
-       * Create the data space with unlimited dimensions.
-       */
-      hsize_t      dims[2]  = { 3, 3};  // dataset dimensions at creation
-      hsize_t      maxdims[2] = {H5S_UNLIMITED, H5S_UNLIMITED};
-      DataSpace mspace1( RANK, dims, maxdims);
+        /*
+         * Create the data space with unlimited dimensions.
+         */
+        hsize_t   dims[2]    = {3, 3}; // dataset dimensions at creation
+        hsize_t   maxdims[2] = {H5S_UNLIMITED, H5S_UNLIMITED};
+        DataSpace mspace1(RANK, dims, maxdims);
 
-      /*
-       * Create a new file. If file exists its contents will be overwritten.
-       */
-      H5File file( FILE_NAME, H5F_ACC_TRUNC );
+        /*
+         * Create a new file. If file exists its contents will be overwritten.
+         */
+        H5File file(FILE_NAME, H5F_ACC_TRUNC);
 
-      /*
-       * Modify dataset creation properties, i.e. enable chunking.
-       */
-      DSetCreatPropList cparms;
+        /*
+         * Modify dataset creation properties, i.e. enable chunking.
+         */
+        DSetCreatPropList cparms;
 
-      hsize_t      chunk_dims[2] ={2, 5};
-      cparms.setChunk( RANK, chunk_dims );
+        hsize_t chunk_dims[2] = {2, 5};
+        cparms.setChunk(RANK, chunk_dims);
 
-      /*
-       * Set fill value for the dataset
-       */
-      int fill_val = 0;
-      cparms.setFillValue( PredType::NATIVE_INT, &fill_val);
+        /*
+         * Set fill value for the dataset
+         */
+        int fill_val = 0;
+        cparms.setFillValue(PredType::NATIVE_INT, &fill_val);
 
-      /*
-       * Create a new dataset within the file using cparms
-       * creation properties.
-       */
-      DataSet dataset = file.createDataSet( DATASET_NAME, PredType::NATIVE_INT, mspace1, cparms);
+        /*
+         * Create a new dataset within the file using cparms
+         * creation properties.
+         */
+        DataSet dataset = file.createDataSet(DATASET_NAME, PredType::NATIVE_INT, mspace1, cparms);
 
-      /*
-       * Extend the dataset. This call assures that dataset is at least 3 x 3.
-       */
-      hsize_t      size[2];
-      size[0]   = 3;
-      size[1]   = 3;
-      dataset.extend( size );
+        /*
+         * Extend the dataset. This call assures that dataset is at least 3 x 3.
+         */
+        hsize_t size[2];
+        size[0] = 3;
+        size[1] = 3;
+        dataset.extend(size);
 
-      /*
-       * Select a hyperslab.
-       */
-      DataSpace fspace1 = dataset.getSpace ();
-      hsize_t     offset[2];
-      offset[0] = 0;
-      offset[1] = 0;
-      hsize_t      dims1[2] = { 3, 3};            /* data1 dimensions */
-      fspace1.selectHyperslab( H5S_SELECT_SET, dims1, offset );
+        /*
+         * Select a hyperslab.
+         */
+        DataSpace fspace1 = dataset.getSpace();
+        hsize_t   offset[2];
+        offset[0]        = 0;
+        offset[1]        = 0;
+        hsize_t dims1[2] = {3, 3}; /* data1 dimensions */
+        fspace1.selectHyperslab(H5S_SELECT_SET, dims1, offset);
 
-      /*
-       * Write the data to the hyperslab.
-       */
-      int       data1[3][3] = { {1, 1, 1},       /* data to write */
-                                {1, 1, 1},
-                                {1, 1, 1} };
-      dataset.write( data1, PredType::NATIVE_INT, mspace1, fspace1 );
+        /*
+         * Write the data to the hyperslab.
+         */
+        int data1[3][3] = {{1, 1, 1}, /* data to write */
+                           {1, 1, 1},
+                           {1, 1, 1}};
+        dataset.write(data1, PredType::NATIVE_INT, mspace1, fspace1);
 
-      /*
-       * Extend the dataset. Dataset becomes 10 x 3.
-       */
-      hsize_t   dims2[2] = { 7, 1};            /* data2 dimensions */
-      dims[0]   = dims1[0] + dims2[0];
-      size[0]   = dims[0];
-      size[1]   = dims[1];
-      dataset.extend( size );
+        /*
+         * Extend the dataset. Dataset becomes 10 x 3.
+         */
+        hsize_t dims2[2] = {7, 1}; /* data2 dimensions */
+        dims[0]          = dims1[0] + dims2[0];
+        size[0]          = dims[0];
+        size[1]          = dims[1];
+        dataset.extend(size);
 
-      /*
-       * Select a hyperslab.
-       */
-      DataSpace fspace2 = dataset.getSpace ();
-      offset[0] = 3;
-      offset[1] = 0;
-      fspace2.selectHyperslab( H5S_SELECT_SET, dims2, offset );
+        /*
+         * Select a hyperslab.
+         */
+        DataSpace fspace2 = dataset.getSpace();
+        offset[0]         = 3;
+        offset[1]         = 0;
+        fspace2.selectHyperslab(H5S_SELECT_SET, dims2, offset);
 
-      /*
-       * Define memory space
-       */
-      DataSpace mspace2( RANK, dims2 );
+        /*
+         * Define memory space
+         */
+        DataSpace mspace2(RANK, dims2);
 
-      /*
-       * Write the data to the hyperslab.
-       */
-      int  data2[7]    = { 2, 2, 2, 2, 2, 2, 2};
-      dataset.write( data2, PredType::NATIVE_INT, mspace2, fspace2 );
+        /*
+         * Write the data to the hyperslab.
+         */
+        int data2[7] = {2, 2, 2, 2, 2, 2, 2};
+        dataset.write(data2, PredType::NATIVE_INT, mspace2, fspace2);
 
-      /*
-       * Extend the dataset. Dataset becomes 10 x 5.
-       */
-      hsize_t   dims3[2] = { 2, 2};            /* data3 dimensions */
-      dims[1]   = dims1[1] + dims3[1];
-      size[0]   = dims[0];
-      size[1]   = dims[1];
-      dataset.extend( size );
+        /*
+         * Extend the dataset. Dataset becomes 10 x 5.
+         */
+        hsize_t dims3[2] = {2, 2}; /* data3 dimensions */
+        dims[1]          = dims1[1] + dims3[1];
+        size[0]          = dims[0];
+        size[1]          = dims[1];
+        dataset.extend(size);
 
-      /*
-       * Select a hyperslab
-       */
-      DataSpace fspace3 = dataset.getSpace ();
-      offset[0] = 0;
-      offset[1] = 3;
-      fspace3.selectHyperslab( H5S_SELECT_SET, dims3, offset );
+        /*
+         * Select a hyperslab
+         */
+        DataSpace fspace3 = dataset.getSpace();
+        offset[0]         = 0;
+        offset[1]         = 3;
+        fspace3.selectHyperslab(H5S_SELECT_SET, dims3, offset);
 
-      /*
-       * Define memory space.
-       */
-      DataSpace mspace3( RANK, dims3 );
+        /*
+         * Define memory space.
+         */
+        DataSpace mspace3(RANK, dims3);
 
-      /*
-       * Write the data to the hyperslab.
-       */
-      int         data3[2][2] = { {3, 3}, {3, 3} };
-      dataset.write( data3, PredType::NATIVE_INT, mspace3, fspace3 );
+        /*
+         * Write the data to the hyperslab.
+         */
+        int data3[2][2] = {{3, 3}, {3, 3}};
+        dataset.write(data3, PredType::NATIVE_INT, mspace3, fspace3);
 
-      /*
-       * Read the data from this dataset and display it.
-       */
-      int i, j;
-      int data_out[NX][NY];
-      for (i = 0; i < NX; i++)
-      {
-         for (j = 0; j < NY; j++)
-            data_out[i][j] = 0;
-      }
-      dataset.read( data_out, PredType::NATIVE_INT );
-      /*
-       * Resulting dataset
-       *
-       *         1 1 1 3 3
-       *         1 1 1 3 3
-       *         1 1 1 0 0
-       *         2 0 0 0 0
-       *         2 0 0 0 0
-       *         2 0 0 0 0
-       *         2 0 0 0 0
-       *         2 0 0 0 0
-       *         2 0 0 0 0
-       *         2 0 0 0 0
-       */
-      /*
-       * Display the result.
-       */
-      for (i=0; i < NX; i++)
-      {
-          for(j=0; j < NY; j++)
-             cout << data_out[i][j] << "  ";
-          cout << endl;
-      }
-   }  // end of try block
+        /*
+         * Read the data from this dataset and display it.
+         */
+        int i, j;
+        int data_out[NX][NY];
+        for (i = 0; i < NX; i++) {
+            for (j = 0; j < NY; j++)
+                data_out[i][j] = 0;
+        }
+        dataset.read(data_out, PredType::NATIVE_INT);
+        /*
+         * Resulting dataset
+         *
+         *         1 1 1 3 3
+         *         1 1 1 3 3
+         *         1 1 1 0 0
+         *         2 0 0 0 0
+         *         2 0 0 0 0
+         *         2 0 0 0 0
+         *         2 0 0 0 0
+         *         2 0 0 0 0
+         *         2 0 0 0 0
+         *         2 0 0 0 0
+         */
+        /*
+         * Display the result.
+         */
+        for (i = 0; i < NX; i++) {
+            for (j = 0; j < NY; j++)
+                cout << data_out[i][j] << "  ";
+            cout << endl;
+        }
+    } // end of try block
 
-   // catch failure caused by the H5File operations
-   catch( FileIException error )
-   {
-      error.printErrorStack();
-      return -1;
-   }
+    // catch failure caused by the H5File operations
+    catch (FileIException error) {
+        error.printErrorStack();
+        return -1;
+    }
 
-   // catch failure caused by the DataSet operations
-   catch( DataSetIException error )
-   {
-      error.printErrorStack();
-      return -1;
-   }
+    // catch failure caused by the DataSet operations
+    catch (DataSetIException error) {
+        error.printErrorStack();
+        return -1;
+    }
 
-   // catch failure caused by the DataSpace operations
-   catch( DataSpaceIException error )
-   {
-      error.printErrorStack();
-      return -1;
-   }
+    // catch failure caused by the DataSpace operations
+    catch (DataSpaceIException error) {
+        error.printErrorStack();
+        return -1;
+    }
 
-   // catch failure caused by the DataSpace operations
-   catch( DataTypeIException error )
-   {
-      error.printErrorStack();
-      return -1;
-   }
-   return 0;
+    // catch failure caused by the DataSpace operations
+    catch (DataTypeIException error) {
+        error.printErrorStack();
+        return -1;
+    }
+    return 0;
 }

c++/examples/h5group.cpp

@@ -6,7 +6,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
@@ -20,11 +20,7 @@
  * the C version is used in this example.
  */
 
-#ifdef OLD_HEADER_FILENAME
-#include <iostream.h>
-#else
 #include <iostream>
-#endif
 using std::cout;
 using std::endl;
 
@@ -32,22 +28,21 @@ using std::endl;
 #include "H5Cpp.h"
 using namespace H5;
 
-const H5std_string FILE_NAME( "Group.h5" );
+const H5std_string FILE_NAME("Group.h5");
 const int          RANK = 2;
 
 // Operator function
-extern "C" herr_t file_info(hid_t loc_id, const char *name, const H5L_info_t *linfo,
-    void *opdata);
+extern "C" herr_t file_info(hid_t loc_id, const char *name, const H5L_info2_t *linfo, void *opdata);
 
-int main(void)
+int
+main(void)
 {
 
-    hsize_t  dims[2];
-    hsize_t  cdims[2];
+    hsize_t dims[2];
+    hsize_t cdims[2];
 
     // Try block to detect exceptions raised by any of the calls inside it
-    try
-    {
+    try {
         /*
          * Turn off the auto-printing when failure occurs so that we can
          * handle the errors appropriately
@@ -58,12 +53,12 @@ int main(void)
          * Create the named file, truncating the existing one if any,
          * using default create and access property lists.
          */
-        H5File *file = new H5File( FILE_NAME, H5F_ACC_TRUNC );
+        H5File *file = new H5File(FILE_NAME, H5F_ACC_TRUNC);
 
         /*
          * Create a group in the file
          */
-        Group* group = new Group( file->createGroup( "/Data" ));
+        Group *group = new Group(file->createGroup("/Data"));
 
         /*
          * Create dataset "Compressed Data" in the group using absolute
@@ -71,21 +66,20 @@ int main(void)
          * GZIP compression with the compression effort set to 6.
          * Note that compression can be used only when dataset is chunked.
          */
-        dims[0] = 1000;
-        dims[1] = 20;
-        cdims[0] = 20;
-        cdims[1] = 20;
-        DataSpace *dataspace = new DataSpace(RANK, dims); // create new dspace
-        DSetCreatPropList ds_creatplist;  // create dataset creation prop list
-        ds_creatplist.setChunk( 2, cdims );  // then modify it for compression
-        ds_creatplist.setDeflate( 6 );
+        dims[0]                     = 1000;
+        dims[1]                     = 20;
+        cdims[0]                    = 20;
+        cdims[1]                    = 20;
+        DataSpace *       dataspace = new DataSpace(RANK, dims); // create new dspace
+        DSetCreatPropList ds_creatplist;                         // create dataset creation prop list
+        ds_creatplist.setChunk(2, cdims);                        // then modify it for compression
+        ds_creatplist.setDeflate(6);
 
         /*
          * Create the first dataset.
          */
-        DataSet* dataset = new DataSet(file->createDataSet(
-                "/Data/Compressed_Data", PredType::NATIVE_INT,
-                *dataspace, ds_creatplist ));
+        DataSet *dataset = new DataSet(
+            file->createDataSet("/Data/Compressed_Data", PredType::NATIVE_INT, *dataspace, ds_creatplist));
 
         /*
          * Close the first dataset.
@@ -96,11 +90,10 @@ int main(void)
         /*
          * Create the second dataset.
          */
-        dims[0] = 500;
-        dims[1] = 20;
+        dims[0]   = 500;
+        dims[1]   = 20;
         dataspace = new DataSpace(RANK, dims); // create second dspace
-        dataset = new DataSet(file->createDataSet("/Data/Float_Data",
-                        PredType::NATIVE_FLOAT, *dataspace));
+        dataset   = new DataSet(file->createDataSet("/Data/Float_Data", PredType::NATIVE_FLOAT, *dataspace));
 
         delete dataset;
         delete dataspace;
@@ -110,16 +103,16 @@ int main(void)
         /*
          * Now reopen the file and group in the file.
          */
-        file = new H5File(FILE_NAME, H5F_ACC_RDWR);
+        file  = new H5File(FILE_NAME, H5F_ACC_RDWR);
         group = new Group(file->openGroup("Data"));
 
         /*
          * Access "Compressed_Data" dataset in the group.
          */
-        try {  // to determine if the dataset exists in the group
-            dataset = new DataSet( group->openDataSet( "Compressed_Data" ));
+        try { // to determine if the dataset exists in the group
+            dataset = new DataSet(group->openDataSet("Compressed_Data"));
         }
-        catch( GroupIException not_found_error ) {
+        catch (GroupIException not_found_error) {
             cout << " Dataset is not found." << endl;
         }
         cout << "dataset \"/Data/Compressed_Data\" is open" << endl;
@@ -132,17 +125,16 @@ int main(void)
         /*
          * Create hard link to the Data group.
          */
-        file->link( H5L_TYPE_HARD, "Data", "Data_new" );
+        file->link(H5L_TYPE_HARD, "Data", "Data_new");
 
         /*
          * We can access "Compressed_Data" dataset using created
          * hard link "Data_new".
          */
-        try {  // to determine if the dataset exists in the file
-            dataset = new DataSet(file->openDataSet( "/Data_new/Compressed_Data" ));
+        try { // to determine if the dataset exists in the file
+            dataset = new DataSet(file->openDataSet("/Data_new/Compressed_Data"));
         }
-        catch( FileIException not_found_error )
-        {
+        catch (FileIException not_found_error) {
             cout << " Dataset is not found." << endl;
         }
         cout << "dataset \"/Data_new/Compressed_Data\" is open" << endl;
@@ -157,7 +149,7 @@ int main(void)
          * root directory.
          */
         cout << endl << "Iterating over elements in the file" << endl;
-        herr_t idx = H5Literate(file->getId(), H5_INDEX_NAME, H5_ITER_INC, NULL, file_info, NULL);
+        herr_t idx = H5Literate2(file->getId(), H5_INDEX_NAME, H5_ITER_INC, NULL, file_info, NULL);
         cout << endl;
 
         /*
@@ -165,17 +157,16 @@ int main(void)
          * of the objects in the file root direvtory.
          */
         cout << "Unlinking..." << endl;
-        try {  // attempt to unlink the dataset
-            file->unlink( "Data" );
+        try { // attempt to unlink the dataset
+            file->unlink("Data");
         }
-        catch( FileIException unlink_error )
-        {
+        catch (FileIException unlink_error) {
             cout << " unlink failed." << endl;
         }
         cout << "\"Data\" is unlinked" << endl;
 
         cout << endl << "Iterating over elements in the file again" << endl;
-        idx = H5Literate(file->getId(), H5_INDEX_NAME, H5_ITER_INC, NULL, file_info, NULL);
+        idx = H5Literate2(file->getId(), H5_INDEX_NAME, H5_ITER_INC, NULL, file_info, NULL);
         cout << endl;
 
         /*
@@ -183,32 +174,28 @@ int main(void)
          */
         delete group;
         delete file;
-    }  // end of try block
+    } // end of try block
 
     // catch failure caused by the H5File operations
-    catch( FileIException error )
-    {
+    catch (FileIException error) {
         error.printErrorStack();
         return -1;
     }
 
     // catch failure caused by the DataSet operations
-    catch( DataSetIException error )
-    {
+    catch (DataSetIException error) {
         error.printErrorStack();
         return -1;
     }
 
     // catch failure caused by the DataSpace operations
-    catch( DataSpaceIException error )
-    {
+    catch (DataSpaceIException error) {
         error.printErrorStack();
         return -1;
     }
 
     // catch failure caused by the Attribute operations
-    catch( AttributeIException error )
-    {
+    catch (AttributeIException error) {
         error.printErrorStack();
         return -1;
     }
@@ -219,7 +206,7 @@ int main(void)
  * Operator function.
  */
 herr_t
-file_info(hid_t loc_id, const char *name, const H5L_info_t *linfo, void *opdata)
+file_info(hid_t loc_id, const char *name, const H5L_info2_t *linfo, void *opdata)
 {
     hid_t group;
 
@@ -236,4 +223,3 @@ file_info(hid_t loc_id, const char *name, const H5L_info_t *linfo, void *opdata)
     H5Gclose(group);
     return 0;
 }
-

c++/examples/h5tutr_cmprss.cpp

@@ -6,7 +6,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
@@ -24,32 +24,32 @@ using std::endl;
 #include "H5Cpp.h"
 using namespace H5;
 
-const H5std_string      FILE_NAME("h5tutr_cmprss.h5");
-const H5std_string      DATASET_NAME("Compressed_Data");
-const int       DIM0 = 100;
-const int       DIM1 = 20;
+const H5std_string FILE_NAME("h5tutr_cmprss.h5");
+const H5std_string DATASET_NAME("Compressed_Data");
+const int          DIM0 = 100;
+const int          DIM1 = 20;
 
-int main (void)
+int
+main(void)
 {
-    hsize_t dims[2] = { DIM0, DIM1 };   // dataset dimensions
-    hsize_t chunk_dims[2] = { 20, 20 }; // chunk dimensions
-    int     i,j, buf[DIM0][DIM1];
+    hsize_t dims[2]       = {DIM0, DIM1}; // dataset dimensions
+    hsize_t chunk_dims[2] = {20, 20};     // chunk dimensions
+    int     i, j, buf[DIM0][DIM1];
 
     // Try block to detect exceptions raised by any of the calls inside it
-    try
-    {
+    try {
         // Turn off the auto-printing when failure occurs so that we can
         // handle the errors appropriately
         Exception::dontPrint();
 
-        // Create a new file using the default property lists. 
+        // Create a new file using the default property lists.
         H5File file(FILE_NAME, H5F_ACC_TRUNC);
 
         // Create the data space for the dataset.
         DataSpace *dataspace = new DataSpace(2, dims);
 
         // Modify dataset creation property to enable chunking
-        DSetCreatPropList  *plist = new  DSetCreatPropList;
+        DSetCreatPropList *plist = new DSetCreatPropList;
         plist->setChunk(2, chunk_dims);
 
         // Set ZLIB (DEFLATE) Compression using level 6.
@@ -60,14 +60,14 @@ int main (void)
         // unsigned szip_options_mask = H5_SZIP_NN_OPTION_MASK;
         // unsigned szip_pixels_per_block = 16;
         // plist->setSzip(szip_options_mask, szip_pixels_per_block);
-     
-        // Create the dataset.      
-        DataSet *dataset = new DataSet(file.createDataSet( DATASET_NAME, 
-                                PredType::STD_I32BE, *dataspace, *plist) );
 
-        for (i = 0; i< DIM0; i++)
-          for (j=0; j<DIM1; j++)
-              buf[i][j] = i+j;
+        // Create the dataset.
+        DataSet *dataset =
+            new DataSet(file.createDataSet(DATASET_NAME, PredType::STD_I32BE, *dataspace, *plist));
+
+        for (i = 0; i < DIM0; i++)
+            for (j = 0; j < DIM1; j++)
+                buf[i][j] = i + j;
 
         // Write data to dataset.
         dataset->write(buf, PredType::NATIVE_INT);
@@ -79,77 +79,73 @@ int main (void)
         file.close();
 
         // -----------------------------------------------
-        // Re-open the file and dataset, retrieve filter 
+        // Re-open the file and dataset, retrieve filter
         // information for dataset and read the data back.
         // -----------------------------------------------
-        
-        int        rbuf[DIM0][DIM1];
-        int        numfilt;
-        size_t     nelmts={1}, namelen={1};
-        unsigned  flags, filter_info, cd_values[1], idx;
-        char       name[1];
+
+        int          rbuf[DIM0][DIM1];
+        int          numfilt;
+        size_t       nelmts = {1}, namelen = {1};
+        unsigned     flags, filter_info, cd_values[1], idx;
+        char         name[1];
         H5Z_filter_t filter_type;
 
         // Open the file and the dataset in the file.
         file.openFile(FILE_NAME, H5F_ACC_RDONLY);
-        dataset = new DataSet(file.openDataSet( DATASET_NAME));
+        dataset = new DataSet(file.openDataSet(DATASET_NAME));
 
         // Get the create property list of the dataset.
-        plist = new DSetCreatPropList(dataset->getCreatePlist ());
+        plist = new DSetCreatPropList(dataset->getCreatePlist());
 
         // Get the number of filters associated with the dataset.
         numfilt = plist->getNfilters();
         cout << "Number of filters associated with dataset: " << numfilt << endl;
 
-        for (idx=0; idx < numfilt; idx++) {
+        for (idx = 0; idx < numfilt; idx++) {
             nelmts = 0;
 
-            filter_type = plist->getFilter(idx, flags, nelmts, cd_values, namelen, name , filter_info);
+            filter_type = plist->getFilter(idx, flags, nelmts, cd_values, namelen, name, filter_info);
 
             cout << "Filter Type: ";
 
             switch (filter_type) {
-              case H5Z_FILTER_DEFLATE:
-                   cout << "H5Z_FILTER_DEFLATE" << endl;
-                   break;
-              case H5Z_FILTER_SZIP:
-                   cout << "H5Z_FILTER_SZIP" << endl; 
-                   break;
-              default:
-                   cout << "Other filter type included." << endl;
-              }
+                case H5Z_FILTER_DEFLATE:
+                    cout << "H5Z_FILTER_DEFLATE" << endl;
+                    break;
+                case H5Z_FILTER_SZIP:
+                    cout << "H5Z_FILTER_SZIP" << endl;
+                    break;
+                default:
+                    cout << "Other filter type included." << endl;
+            }
         }
 
         // Read data.
         dataset->read(rbuf, PredType::NATIVE_INT);
 
-        delete plist; 
+        delete plist;
         delete dataset;
-        file.close();   // can be skipped
+        file.close(); // can be skipped
 
-    }  // end of try block
+    } // end of try block
 
     // catch failure caused by the H5File operations
-    catch(FileIException error)
-    {
+    catch (FileIException error) {
         error.printErrorStack();
         return -1;
     }
 
     // catch failure caused by the DataSet operations
-    catch(DataSetIException error)
-    {
+    catch (DataSetIException error) {
         error.printErrorStack();
         return -1;
     }
 
     // catch failure caused by the DataSpace operations
-    catch(DataSpaceIException error)
-    {
+    catch (DataSpaceIException error) {
         error.printErrorStack();
         return -1;
     }
 
-    return 0;  // successfully terminated
+    return 0; // successfully terminated
 }
-

c++/examples/h5tutr_crtatt.cpp

@@ -6,7 +6,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
@@ -21,69 +21,62 @@
 #include "H5Cpp.h"
 using namespace H5;
 
-const H5std_string      FILE_NAME( "h5tutr_dset.h5" );
-const H5std_string      DATASET_NAME( "dset" );
-const H5std_string      ATTR_NAME( "Units" );
+const H5std_string FILE_NAME("h5tutr_dset.h5");
+const H5std_string DATASET_NAME("dset");
+const H5std_string ATTR_NAME("Units");
 
-const int       DIM1 = 2;
+const int DIM1 = 2;
 
-int main (void)
+int
+main(void)
 {
-   int attr_data[2] = { 100, 200};
-   hsize_t dims[1] = { DIM1 };
-   
+    int     attr_data[2] = {100, 200};
+    hsize_t dims[1]      = {DIM1};
 
-   // Try block to detect exceptions raised by any of the calls inside it
-   try
-   {
+    // Try block to detect exceptions raised by any of the calls inside it
+    try {
         // Turn off the auto-printing when failure occurs so that we can
         // handle the errors appropriately
         Exception::dontPrint();
 
         // Open an existing file and dataset.
-        H5File file( FILE_NAME, H5F_ACC_RDWR );
-        DataSet dataset = file.openDataSet( DATASET_NAME );
+        H5File  file(FILE_NAME, H5F_ACC_RDWR);
+        DataSet dataset = file.openDataSet(DATASET_NAME);
 
         // Create the data space for the attribute.
-        DataSpace attr_dataspace = DataSpace (1, dims );
+        DataSpace attr_dataspace = DataSpace(1, dims);
 
-        // Create a dataset attribute. 
-        Attribute attribute = dataset.createAttribute( ATTR_NAME, PredType::STD_I32BE, 
-                                                  attr_dataspace);
-     
-        // Write the attribute data. 
-        attribute.write( PredType::NATIVE_INT, attr_data);
+        // Create a dataset attribute.
+        Attribute attribute = dataset.createAttribute(ATTR_NAME, PredType::STD_I32BE, attr_dataspace);
 
-   }  // end of try block
+        // Write the attribute data.
+        attribute.write(PredType::NATIVE_INT, attr_data);
 
-   // catch failure caused by the H5File operations
-   catch( DataSpaceIException error )
-   {
+    } // end of try block
+
+    // catch failure caused by the H5File operations
+    catch (DataSpaceIException error) {
         error.printErrorStack();
         return -1;
-   }
+    }
 
-   // catch failure caused by the H5File operations
-   catch( AttributeIException error )
-   {
+    // catch failure caused by the H5File operations
+    catch (AttributeIException error) {
         error.printErrorStack();
         return -1;
-   }
+    }
 
-   // catch failure caused by the H5File operations
-   catch( FileIException error )
-   {
+    // catch failure caused by the H5File operations
+    catch (FileIException error) {
         error.printErrorStack();
         return -1;
-   }
+    }
 
-   // catch failure caused by the DataSet operations
-   catch( DataSetIException error )
-   {
+    // catch failure caused by the DataSet operations
+    catch (DataSetIException error) {
         error.printErrorStack();
         return -1;
-   }
+    }
 
-   return 0;  // successfully terminated
+    return 0; // successfully terminated
 }
-

c++/examples/h5tutr_crtdat.cpp

@@ -6,7 +6,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
@@ -22,56 +22,52 @@
 #include "H5Cpp.h"
 using namespace H5;
 
-const H5std_string      FILE_NAME("h5tutr_dset.h5");
-const H5std_string      DATASET_NAME("dset");
-const int        NX = 4;                     // dataset dimensions
-const int        NY = 6;
-const int        RANK = 2;
+const H5std_string FILE_NAME("h5tutr_dset.h5");
+const H5std_string DATASET_NAME("dset");
+const int          NX   = 4; // dataset dimensions
+const int          NY   = 6;
+const int          RANK = 2;
 
-int main (void)
+int
+main(void)
 {
     // Try block to detect exceptions raised by any of the calls inside it
-    try
-    {
+    try {
         // Turn off the auto-printing when failure occurs so that we can
         // handle the errors appropriately
         Exception::dontPrint();
 
-        // Create a new file using the default property lists. 
+        // Create a new file using the default property lists.
         H5File file(FILE_NAME, H5F_ACC_TRUNC);
 
         // Create the data space for the dataset.
-        hsize_t dims[2];               // dataset dimensions
+        hsize_t dims[2]; // dataset dimensions
         dims[0] = NX;
         dims[1] = NY;
         DataSpace dataspace(RANK, dims);
 
-        // Create the dataset.      
+        // Create the dataset.
         DataSet dataset = file.createDataSet(DATASET_NAME, PredType::STD_I32BE, dataspace);
 
-    }  // end of try block
+    } // end of try block
 
     // catch failure caused by the H5File operations
-    catch(FileIException error)
-    {
+    catch (FileIException error) {
         error.printErrorStack();
         return -1;
     }
 
     // catch failure caused by the DataSet operations
-    catch(DataSetIException error)
-    {
+    catch (DataSetIException error) {
         error.printErrorStack();
         return -1;
     }
 
     // catch failure caused by the DataSpace operations
-    catch(DataSpaceIException error)
-    {
+    catch (DataSpaceIException error) {
         error.printErrorStack();
         return -1;
     }
 
-    return 0;  // successfully terminated
+    return 0; // successfully terminated
 }
-

c++/examples/h5tutr_crtgrp.cpp

@@ -6,7 +6,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
@@ -26,37 +26,35 @@ using namespace H5;
 
 const H5std_string FILE_NAME("h5tutr_group.h5");
 
-int main(void)
+int
+main(void)
 {
     // Try block to detect exceptions raised by any of the calls inside it
-    try
-    {
+    try {
         // Turn off the auto-printing when failure occurs so that we can
         // handle the errors appropriately
         Exception::dontPrint();
 
         // Create a new file using default property lists.
         H5File file(FILE_NAME, H5F_ACC_TRUNC);
-        
+
         // Create a group named "/MygGroup" in the file
         Group group(file.createGroup("/MyGroup"));
 
         // File and group will be closed as their instances go out of scope.
-   
+
     } // end of try block
 
     // catch failure caused by the H5File operations
-    catch(FileIException error)
-    {
+    catch (FileIException error) {
         error.printErrorStack();
         return -1;
     }
     // catch failure caused by the Group operations
-    catch(GroupIException error)
-    {
+    catch (GroupIException error) {
         error.printErrorStack();
         return -1;
     }
- 
+
     return 0;
 }

c++/examples/h5tutr_crtgrpar.cpp

@@ -6,7 +6,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
@@ -26,13 +26,13 @@ using namespace H5;
 
 const H5std_string FILE_NAME("h5tutr_groups.h5");
 
-int main(void)
+int
+main(void)
 {
 
     // Try block to detect exceptions raised by any of the calls inside it
-    try
-    {
-      
+    try {
+
         // Turn off the auto-printing when failure occurs so that we can
         // handle the errors appropriately.
 
@@ -43,43 +43,39 @@ int main(void)
         H5File file(FILE_NAME, H5F_ACC_TRUNC);
 
         // Create group "MyGroup" in the root group using an absolute name.
-         
-        Group group1(file.createGroup( "/MyGroup"));
- 
+
+        Group group1(file.createGroup("/MyGroup"));
+
         // Create group "Group_A" in group "MyGroup" using an
         // absolute name.
 
-        Group group2(file.createGroup("/MyGroup/Group_A"));   
+        Group group2(file.createGroup("/MyGroup/Group_A"));
 
         // Create group "Group_B" in group "MyGroup" using a
         // relative name.
-  
-        Group group3(group1.createGroup ("Group_B"));
- 
+
+        Group group3(group1.createGroup("Group_B"));
+
         // Close the groups and file.
 
         group1.close();
         group2.close();
         group3.close();
         file.close();
-    
+
     } // end of try block
 
     // catch failure caused by the File operations
-    catch(FileIException error)
-    {
+    catch (FileIException error) {
         error.printErrorStack();
         return -1;
     }
 
     // catch failure caused by the Group operations
-    catch(GroupIException error)
-    {
+    catch (GroupIException error) {
         error.printErrorStack();
         return -1;
     }
 
     return 0;
 }
-
-

c++/examples/h5tutr_crtgrpd.cpp

@@ -6,7 +6,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
@@ -27,33 +27,33 @@ using namespace H5;
 const H5std_string FILE_NAME("h5tutr_groups.h5");
 const H5std_string DATASET_NAME1("/MyGroup/dset1");
 const H5std_string DATASET_NAME2("dset2");
-const int       RANK = 2;
-const int       D1DIM1 = 3;
-const int       D1DIM2 = 3;
-const int       D2DIM1 = 2;
-const int       D2DIM2 = 10;
+const int          RANK   = 2;
+const int          D1DIM1 = 3;
+const int          D1DIM2 = 3;
+const int          D2DIM1 = 2;
+const int          D2DIM2 = 10;
 
-int main(void)
+int
+main(void)
 {
     int dset1_data[D1DIM1][D1DIM2], dset2_data[D2DIM1][D2DIM2]; // data buffers
     int i, j;
 
     // Try block to catch exceptions raised by any of the calls inside it
-    try
-    {
+    try {
         // Turn off the auto-printing when failure occurs so that we can
         // handle the errors appropriately
         Exception::dontPrint();
 
-        // Initialize the first dataset. 
+        // Initialize the first dataset.
         for (i = 0; i < D1DIM1; i++)
             for (j = 0; j < D1DIM2; j++)
-               dset1_data[i][j] = j + 1;
+                dset1_data[i][j] = j + 1;
 
-        //  Initialize the second dataset. 
+        //  Initialize the second dataset.
         for (i = 0; i < D2DIM1; i++)
-          for (j = 0; j < D2DIM2; j++)
-              dset2_data[i][j] = j + 1;
+            for (j = 0; j < D2DIM2; j++)
+                dset2_data[i][j] = j + 1;
 
         // Open an existing file and dataset.
         H5File file(FILE_NAME, H5F_ACC_RDWR);
@@ -62,15 +62,14 @@ int main(void)
         // pointer for the instance 'dataspace'.  It can be deleted and
         // used again later for another data space.  An HDF5 identifier is
         // closed by the destructor or the method 'close()'.
-        hsize_t dims[RANK];               // dataset dimensions
-        dims[0] = D1DIM1;
-        dims[1] = D1DIM2;
-        DataSpace *dataspace = new DataSpace (RANK, dims);
+        hsize_t dims[RANK]; // dataset dimensions
+        dims[0]              = D1DIM1;
+        dims[1]              = D1DIM2;
+        DataSpace *dataspace = new DataSpace(RANK, dims);
 
         // Create the dataset in group "MyGroup".  Same note as for the
         // dataspace above.
-        DataSet *dataset = new DataSet (file.createDataSet(DATASET_NAME1, 
-                                         PredType::STD_I32BE, *dataspace));
+        DataSet *dataset = new DataSet(file.createDataSet(DATASET_NAME1, PredType::STD_I32BE, *dataspace));
 
         // Write the data to the dataset using default memory space, file
         // space, and transfer properties.
@@ -81,16 +80,15 @@ int main(void)
         delete dataspace;
 
         // Create the data space for the second dataset.
-        dims[0] = D2DIM1;
-        dims[1] = D2DIM2;
-        dataspace = new DataSpace (RANK, dims);
+        dims[0]   = D2DIM1;
+        dims[1]   = D2DIM2;
+        dataspace = new DataSpace(RANK, dims);
 
         // Create group "Group_A" in group "MyGroup".
         Group group(file.openGroup("/MyGroup/Group_A"));
 
         // Create the second dataset in group "Group_A".
-        dataset = new DataSet (group.createDataSet(DATASET_NAME2, 
-                                         PredType::STD_I32BE, *dataspace));
+        dataset = new DataSet(group.createDataSet(DATASET_NAME2, PredType::STD_I32BE, *dataspace));
 
         // Write the data to the dataset using default memory space, file
         // space, and transfer properties.
@@ -100,35 +98,31 @@ int main(void)
         delete dataspace;
         delete dataset;
         group.close();
-    
+
     } // end of try block
 
     // catch failure caused by the H5File operations
-    catch(FileIException error)
-    {
-         error.printErrorStack();
-         return -1;
+    catch (FileIException error) {
+        error.printErrorStack();
+        return -1;
     }
     // catch failure caused by the DataSet operations
-    catch(DataSetIException error)
-    {
-         error.printErrorStack();
-         return -1;
+    catch (DataSetIException error) {
+        error.printErrorStack();
+        return -1;
     }
 
     // catch failure caused by the DataSpace operations
-    catch(DataSpaceIException error)
-    {
+    catch (DataSpaceIException error) {
         error.printErrorStack();
         return -1;
     }
 
     // catch failure caused by the Group operations
-    catch(GroupIException error)
-    {
+    catch (GroupIException error) {
         error.printErrorStack();
         return -1;
     }
- 
-     return 0;
+
+    return 0;
 }

c++/examples/h5tutr_extend.cpp

@@ -6,7 +6,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
@@ -24,69 +24,63 @@ using std::endl;
 #include "H5Cpp.h"
 using namespace H5;
 
-const H5std_string      FILE_NAME("h5tutr_extend.h5");
-const H5std_string      DATASETNAME("ExtendibleArray");
+const H5std_string FILE_NAME("h5tutr_extend.h5");
+const H5std_string DATASETNAME("ExtendibleArray");
 
-int main (void)
+int
+main(void)
 {
-     hsize_t dims[2] = {3,3};           // dataset dimensions at creation
-     hsize_t maxdims[2] = {H5S_UNLIMITED, H5S_UNLIMITED}; 
-     hsize_t chunk_dims[2] ={2, 5};
-     int           data[3][3] = { {1, 1, 1},    // data to write 
-                                  {1, 1, 1},
-                                  {1, 1, 1} };
+    hsize_t dims[2]       = {3, 3}; // dataset dimensions at creation
+    hsize_t maxdims[2]    = {H5S_UNLIMITED, H5S_UNLIMITED};
+    hsize_t chunk_dims[2] = {2, 5};
+    int     data[3][3]    = {{1, 1, 1}, // data to write
+                      {1, 1, 1},
+                      {1, 1, 1}};
 
-     // Variables used in extending and writing to the extended portion of dataset 
+    // Variables used in extending and writing to the extended portion of dataset
 
-     hsize_t size[2];
-     hsize_t offset[2];
-     hsize_t dimsext[2] = {7, 3};         // extend dimensions 
-     int     dataext[7][3] = { {2, 3, 4},
-                                      {2, 3, 4},
-                                      {2, 3, 4},
-                                      {2, 3, 4},
-                                      {2, 3, 4},
-                                      {2, 3, 4},
-                                      {2, 3, 4} };
+    hsize_t size[2];
+    hsize_t offset[2];
+    hsize_t dimsext[2]    = {7, 3}; // extend dimensions
+    int     dataext[7][3] = {{2, 3, 4}, {2, 3, 4}, {2, 3, 4}, {2, 3, 4}, {2, 3, 4}, {2, 3, 4}, {2, 3, 4}};
 
     // Try block to detect exceptions raised by any of the calls inside it
-    try
-    {
+    try {
         // Turn off the auto-printing when failure occurs so that we can
         // handle the errors appropriately
         Exception::dontPrint();
 
-        // Create a new file using the default property lists. 
+        // Create a new file using the default property lists.
         H5File file(FILE_NAME, H5F_ACC_TRUNC);
 
         // Create the data space for the dataset.  Note the use of pointer
         // for the instance 'dataspace'.  It can be deleted and used again
         // later for another dataspace.  An HDF5 identifier can be closed
         // by the destructor or the method 'close()'.
-        DataSpace *dataspace = new DataSpace (2, dims, maxdims);
+        DataSpace *dataspace = new DataSpace(2, dims, maxdims);
 
         // Modify dataset creation property to enable chunking
         DSetCreatPropList prop;
         prop.setChunk(2, chunk_dims);
 
         // Create the chunked dataset.  Note the use of pointer.
-        DataSet *dataset = new DataSet(file.createDataSet( DATASETNAME, 
-                                 PredType::STD_I32BE, *dataspace, prop) );
- 
+        DataSet *dataset =
+            new DataSet(file.createDataSet(DATASETNAME, PredType::STD_I32BE, *dataspace, prop));
+
         // Write data to dataset.
         dataset->write(data, PredType::NATIVE_INT);
 
         // Extend the dataset. Dataset becomes 10 x 3.
         size[0] = dims[0] + dimsext[0];
         size[1] = dims[1];
-        dataset->extend(size); 
+        dataset->extend(size);
 
         // Select a hyperslab in extended portion of the dataset.
-        DataSpace *filespace = new DataSpace(dataset->getSpace ());
-        offset[0] = 3;
-        offset[1] = 0;
+        DataSpace *filespace = new DataSpace(dataset->getSpace());
+        offset[0]            = 3;
+        offset[1]            = 0;
         filespace->selectHyperslab(H5S_SELECT_SET, dimsext, offset);
-        
+
         // Define memory space.
         DataSpace *memspace = new DataSpace(2, dimsext, NULL);
 
@@ -101,37 +95,38 @@ int main (void)
         delete dataset;
         file.close();
 
-        // --------------------------------------- 
+        // ---------------------------------------
         // Re-open the file and read the data back
-        // --------------------------------------- 
+        // ---------------------------------------
 
-        int        rdata[10][3];
-        int        i,j, rank, rank_chunk;
-        hsize_t    chunk_dimsr[2], dimsr[2];
+        int     rdata[10][3];
+        int     i, j, rank, rank_chunk;
+        hsize_t chunk_dimsr[2], dimsr[2];
 
         // Open the file and dataset.
         file.openFile(FILE_NAME, H5F_ACC_RDONLY);
-        dataset = new DataSet(file.openDataSet( DATASETNAME)); 
+        dataset = new DataSet(file.openDataSet(DATASETNAME));
 
         // Get the dataset's dataspace and creation property list.
         filespace = new DataSpace(dataset->getSpace());
-        prop = dataset->getCreatePlist();
+        prop      = dataset->getCreatePlist();
 
         // Get information to obtain memory dataspace.
-        rank = filespace->getSimpleExtentNdims();
+        rank            = filespace->getSimpleExtentNdims();
         herr_t status_n = filespace->getSimpleExtentDims(dimsr);
 
         if (H5D_CHUNKED == prop.getLayout())
-             rank_chunk = prop.getChunk(rank, chunk_dimsr);
-        cout << "rank chunk = " << rank_chunk << endl;;
+            rank_chunk = prop.getChunk(rank, chunk_dimsr);
+        cout << "rank chunk = " << rank_chunk << endl;
+        ;
 
         memspace = new DataSpace(rank, dimsr, NULL);
         dataset->read(rdata, PredType::NATIVE_INT, *memspace, *filespace);
-      
+
         cout << endl;
         for (j = 0; j < dimsr[0]; j++) {
             for (i = 0; i < dimsr[1]; i++)
-               cout << " " <<  rdata[j][i];
+                cout << " " << rdata[j][i];
             cout << endl;
         }
 
@@ -141,30 +136,26 @@ int main (void)
         delete memspace;
         delete dataset;
         file.close();
-      
-    }  // end of try block
+
+    } // end of try block
 
     // catch failure caused by the H5File operations
-    catch(FileIException error)
-    {
+    catch (FileIException error) {
         error.printErrorStack();
         return -1;
     }
 
     // catch failure caused by the DataSet operations
-    catch(DataSetIException error)
-    {
+    catch (DataSetIException error) {
         error.printErrorStack();
         return -1;
     }
 
     // catch failure caused by the DataSpace operations
-    catch(DataSpaceIException error)
-    {
+    catch (DataSpaceIException error) {
         error.printErrorStack();
         return -1;
     }
 
-    return 0;  // successfully terminated
+    return 0; // successfully terminated
 }
-