Merge pull request #1633 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:feature/json_vol to feature/json_vol

* commit '9b2bc5956784f311ff23512e1a359c29c1bd69a9':
  Yanked H5private.h and added hdf5.h.

BRANCH.md

@@ -0,0 +1,30 @@
+This branch is for the development of a test VOL connector to better
+test the VOL API. In particular, this will expose any issues where
+we've baked 'native file'-ness into the API.
+
+The intent is to implement 100% of the HDF5 library's functionality
+so it can be transparently subbed in for the native VOL connector.
+
+The JSON parser I've chosen is Jannsen, which is used in other THG
+products and projects and has an MIT license.
+
+It currently only supports the Autotools, but it will not be difficult
+to add CMake support.
+
+Plan:
+* Implement configuration and building via the autotools. (DONE)
+* Add a test program that loads the connector. (DONE)
+* Implement basic file operations.
+* Implement group operations.
+* Implement basic dataset operations.
+* Implement basic attribute operations.
+
+NOTES:
+* The internets says to use libuuid to generate UUIDs as it's pretty
+  lightweight.
+* Due to dependencies on libuuid and jansson, we're going to need to
+  protect the code and only build when everything is present. I think
+  this is okay since this is more of a test for ensuring the VOL doesn't
+  suck than it is a test that someone's build is working normally.
+* Partial I/O is going to be crazy slow unless I want to add in some
+  sort of optimized data container behind the scenes.

CMakeFilters.cmake

@@ -27,7 +27,15 @@ if (HDF5_ALLOW_EXTERNAL_SUPPORT MATCHES "GIT" OR HDF5_ALLOW_EXTERNAL_SUPPORT MAT
       set (TGZPATH ${HDF5_SOURCE_DIR})
     endif ()
     set (ZLIB_URL ${TGZPATH}/${ZLIB_TGZ_NAME})
+    if (NOT EXISTS "${ZLIB_URL}")
+      set (HDF5_ENABLE_Z_LIB_SUPPORT OFF CACHE BOOL "" FORCE)
+      message (STATUS "Filter ZLIB file ${ZLIB_URL} not found")
+    endif ()
     set (SZIP_URL ${TGZPATH}/${SZIP_TGZ_NAME})
+    if (NOT EXISTS "${SZIP_URL}")
+      set (HDF5_ENABLE_SZIP_SUPPORT OFF CACHE BOOL "" FORCE)
+      message (STATUS "Filter SZIP file ${SZIP_URL} not found")
+    endif ()
   else ()
     set (ZLIB_USE_EXTERNAL 0)
     set (SZIP_USE_EXTERNAL 0)

CMakeInstallation.cmake

@@ -104,6 +104,12 @@ endif ()
 # Configure the hdf5-config-version .cmake file for the install directory
 #-----------------------------------------------------------------------------
 if (NOT HDF5_EXTERNALLY_CONFIGURED)
+  # 3.11 or greater
+  #write_basic_package_version_file (
+  #  ${HDF5_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/${HDF5_PACKAGE}${HDF_PACKAGE_EXT}-config-version.cmake
+  #  VERSION ${HDF5_PACKAGE_VERSION}
+  #  COMPATIBILITY SameMinorVersion
+  #)
   configure_file (
       ${HDF_RESOURCES_DIR}/hdf5-config-version.cmake.in
       ${HDF5_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/${HDF5_PACKAGE}${HDF_PACKAGE_EXT}-config-version.cmake @ONLY
@@ -125,7 +131,7 @@ else ()
 endif ()
 configure_file (
     ${HDF_RESOURCES_DIR}/libhdf5.settings.cmake.in
-    ${HDF5_BINARY_DIR}/libhdf5.settings @ONLY
+    ${HDF5_BINARY_DIR}/libhdf5.settings ESCAPE_QUOTES @ONLY
 )
 install (
     FILES ${HDF5_BINARY_DIR}/libhdf5.settings
@@ -134,7 +140,7 @@ install (
 )
 
 #-----------------------------------------------------------------------------
-# Configure the HDF518_Examples.cmake file and the examples
+# Configure the HDF5_Examples.cmake file and the examples
 #-----------------------------------------------------------------------------
 option (HDF5_PACK_EXAMPLES  "Package the HDF5 Library Examples Compressed File" OFF)
 if (HDF5_PACK_EXAMPLES)
@@ -215,6 +221,7 @@ if (NOT HDF5_EXTERNALLY_CONFIGURED)
     if (HDF5_PACK_INSTALL_DOCS)
       set (release_files
           ${release_files}
+          ${HDF5_SOURCE_DIR}/release_docs/INSTALL_Warnings.txt
           ${HDF5_SOURCE_DIR}/release_docs/INSTALL_CMake.txt
           ${HDF5_SOURCE_DIR}/release_docs/HISTORY-1_8.txt
           ${HDF5_SOURCE_DIR}/release_docs/INSTALL

CMakeLists.txt

@@ -10,7 +10,7 @@ project (HDF5 C)
 # set CMAKE_INSTALL_PREFIX to the required install path.
 # Make install can be used to install all components for system-wide use.
 #
-if ("${CMAKE_CURRENT_SOURCE_DIR}" STREQUAL "${CMAKE_CURRENT_BINARY_DIR}")
+if (CMAKE_CURRENT_SOURCE_DIR STREQUAL CMAKE_CURRENT_BINARY_DIR)
     MESSAGE(FATAL_ERROR "\nERROR! ${PROJECT_NAME} DOES NOT SUPPORT IN SOURCE BUILDS!\n"
       "CMAKE_CURRENT_SOURCE_DIR=${CMAKE_CURRENT_SOURCE_DIR}"
       " == CMAKE_CURRENT_BINARY_DIR=${CMAKE_CURRENT_BINARY_DIR}\n"
@@ -46,6 +46,9 @@ endif ()
 #   dependencies of the HDF5 libs may be 'incomplete', add additional
 #   dependencies to this variable so that external projects pick them up
 #
+#option (HDF5_EXTERNAL_LIB_PREFIX "Use prefix for custom library naming." "")
+set (HDF5_EXTERNAL_LIB_PREFIX "" CACHE STRING "Use prefix for custom library naming.")
+mark_as_advanced (HDF5_EXTERNAL_LIB_PREFIX)
 # HDF5_EXTERNAL_LIB_PREFIX :
 #   If the parent project needs to install hdf libraries, but avoid
 #   name conflicts with system versions, then a prefix may be added
@@ -311,7 +314,7 @@ set (HDF5_PACKAGE_NAME "HDF5")
 set (HDF5_PACKAGE_VERSION "${H5_VERS_MAJOR}.${H5_VERS_MINOR}.${H5_VERS_RELEASE}")
 set (HDF5_PACKAGE_VERSION_MAJOR "${H5_VERS_MAJOR}.${H5_VERS_MINOR}")
 set (HDF5_PACKAGE_VERSION_MINOR "${H5_VERS_RELEASE}")
-if (NOT "${H5_VERS_SUBRELEASE}" STREQUAL "")
+if (H5_VERS_SUBRELEASE)
   set (HDF5_PACKAGE_VERSION_STRING "${HDF5_PACKAGE_VERSION}-${H5_VERS_SUBRELEASE}")
 else ()
   set (HDF5_PACKAGE_VERSION_STRING "${HDF5_PACKAGE_VERSION}")
@@ -430,7 +433,7 @@ set (CMAKE_POSITION_INDEPENDENT_CODE ON)
 #-----------------------------------------------------------------------------
 # Option to Build Static executables
 #-----------------------------------------------------------------------------
-option (BUILD_STATIC_EXECS "Build Static Executabless" OFF)
+option (BUILD_STATIC_EXECS "Build Static Executables" OFF)
 if (BUILD_STATIC_EXECS)
   if (NOT WIN32)
     set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -static")
@@ -443,9 +446,14 @@ endif ()
 #-----------------------------------------------------------------------------
 option (HDF5_ENABLE_COVERAGE "Enable code coverage for Libraries and Programs" OFF)
 if (HDF5_ENABLE_COVERAGE)
-  set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -g -O0 -fprofile-arcs -ftest-coverage")
-  set (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -g -O0 -fprofile-arcs -ftest-coverage")
-  set (LDFLAGS "${LDFLAGS} -fprofile-arcs -ftest-coverage")
+  set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -g -O0 --coverage -fprofile-arcs -ftest-coverage")
+  set (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -g --coverage -O0 -fprofile-arcs -ftest-coverage")
+  if (CMAKE_C_COMPILER_ID STREQUAL "GNU")
+    set (LDFLAGS "${LDFLAGS} -fprofile-arcs -ftest-coverage")
+    link_libraries (gcov)
+  else ()
+    set (CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} --coverage")
+  endif ()
 endif ()
 
 #-----------------------------------------------------------------------------
@@ -473,6 +481,15 @@ if (HDF5_MEMORY_ALLOC_SANITY_CHECK)
   set (H5_MEMORY_ALLOC_SANITY_CHECK 1)
 endif ()
 
+#-----------------------------------------------------------------------------
+# Option to enable/disable using pread/pwrite for VFDs
+#-----------------------------------------------------------------------------
+option (HDF5_ENABLE_PREADWRITE "Use pread/pwrite in sec2/log/core VFDs in place of read/write (when available)" ON)
+mark_as_advanced (HDF5_ENABLE_PREADWRITE)
+if (HDF5_ENABLE_PREADWRITE AND H5_HAVE_PREAD AND H5_HAVE_PWRITE)
+  set (H5_HAVE_PREADWRITE 1)
+endif ()
+
 #-----------------------------------------------------------------------------
 # Option to use deprecated public API symbols
 #-----------------------------------------------------------------------------
@@ -543,11 +560,11 @@ else ()
 endif ()
 
 include (${HDF_RESOURCES_DIR}/HDFCompilerFlags.cmake)
+set (CMAKE_MODULE_PATH ${HDF_RESOURCES_DIR} ${HDF_RESOURCES_EXT_DIR} ${CMAKE_MODULE_PATH})
 
 #-----------------------------------------------------------------------------
 # Option to Enable MPI Parallel
 #-----------------------------------------------------------------------------
-set (CMAKE_MODULE_PATH ${HDF_RESOURCES_DIR} ${HDF_RESOURCES_EXT_DIR} ${CMAKE_MODULE_PATH})
 option (HDF5_ENABLE_PARALLEL "Enable parallel build (requires MPI)" OFF)
 if (HDF5_ENABLE_PARALLEL)
   find_package(MPI REQUIRED)
@@ -555,12 +572,33 @@ if (HDF5_ENABLE_PARALLEL)
     set (H5_HAVE_PARALLEL 1)
     # MPI checks, only do these if MPI_C_FOUND is true, otherwise they always fail
     # and once set, they are cached as false and not regenerated
-    set (CMAKE_REQUIRED_LIBRARIES "${MPI_C_LIBRARIES}" )
+    set (CMAKE_REQUIRED_LIBRARIES "${MPI_C_LIBRARIES}")
+    set (CMAKE_REQUIRED_INCLUDES "${MPI_C_INCLUDE_DIRS}")
     # Used by Fortran + MPI
-    CHECK_SYMBOL_EXISTS (MPI_Comm_c2f "${MPI_C_INCLUDE_DIRS}/mpi.h"  H5_HAVE_MPI_MULTI_LANG_Comm)
-    CHECK_SYMBOL_EXISTS (MPI_Info_c2f "${MPI_C_INCLUDE_DIRS}/mpi.h"  H5_HAVE_MPI_MULTI_LANG_Info)
+    CHECK_SYMBOL_EXISTS (MPI_Comm_c2f "mpi.h"  H5_HAVE_MPI_MULTI_LANG_Comm)
+    CHECK_SYMBOL_EXISTS (MPI_Info_c2f "mpi.h"  H5_HAVE_MPI_MULTI_LANG_Info)
+
+    # Used by Parallel Compression feature
+    set (PARALLEL_FILTERED_WRITES ON)
+    CHECK_SYMBOL_EXISTS (MPI_Mprobe "mpi.h" H5_HAVE_MPI_Mprobe)
+    CHECK_SYMBOL_EXISTS (MPI_Imrecv "mpi.h" H5_HAVE_MPI_Imrecv)
+    if (NOT H5_HAVE_MPI_Mprobe OR NOT H5_HAVE_MPI_Imrecv)
+      message (WARNING "The MPI_Mprobe and/or MPI_Imrecv functions could not be located.
+               Parallel writes of filtered data will be disabled.")
+      set (PARALLEL_FILTERED_WRITES OFF)
+    endif ()
+
+    # Used by big I/O feature
+    set (LARGE_PARALLEL_IO ON)
+    CHECK_SYMBOL_EXISTS (MPI_Get_elements_x "mpi.h" H5_HAVE_MPI_Get_elements_x)
+    CHECK_SYMBOL_EXISTS (MPI_Type_size_x "mpi.h" H5_HAVE_MPI_Type_size_x)
+    if (NOT H5_HAVE_MPI_Get_elements_x OR NOT H5_HAVE_MPI_Type_size_x)
+      message (WARNING "The MPI_Get_elements_x and/or MPI_Type_size_x functions could not be located.
+               Reading/Writing >2GB of data in a single parallel I/O operation will be disabled.")
+      set (LARGE_PARALLEL_IO OFF)
+    endif ()
   else ()
-    message (STATUS "Parallel libraries not found")
+    message (FATAL_ERROR "Parallel libraries not found")
   endif ()
 endif ()
 
@@ -593,6 +631,26 @@ if (HDF5_USE_18_API_DEFAULT)
   set (DEFAULT_API_VERSION "v18")
 endif ()
 
+#-----------------------------------------------------------------------------
+# Option to use 1.10.x API
+#-----------------------------------------------------------------------------
+option (HDF5_USE_110_API_DEFAULT "Use the HDF5 1.10.x API by default" OFF)
+set (H5_USE_110_API_DEFAULT 0)
+if (HDF5_USE_110_API_DEFAULT)
+  set (H5_USE_110_API_DEFAULT 1)
+  set (DEFAULT_API_VERSION "v110")
+endif ()
+
+#-----------------------------------------------------------------------------
+# Option to use 1.12.x API
+#-----------------------------------------------------------------------------
+option (HDF5_USE_112_API_DEFAULT "Use the HDF5 1.12.x API by default" ON)
+set (H5_USE_112_API_DEFAULT 0)
+if (HDF5_USE_112_API_DEFAULT)
+  set (H5_USE_112_API_DEFAULT 1)
+  set (DEFAULT_API_VERSION "v112")
+endif ()
+
 #-----------------------------------------------------------------------------
 # Include user macros
 #-----------------------------------------------------------------------------
@@ -625,8 +683,10 @@ endif ()
 option (HDF5_ENABLE_THREADSAFE "Enable thread-safety" OFF)
 if (HDF5_ENABLE_THREADSAFE)
   # check for unsupported options
-  message (STATUS " **** thread-safety option not supported with static library **** ")
-  message (STATUS " **** thread-safety option will not be used building static library **** ")
+  if (WIN32)
+    message (STATUS " **** thread-safety option not supported with static library **** ")
+    message (STATUS " **** thread-safety option will not be used building static library **** ")
+  endif ()
   if (HDF5_ENABLE_PARALLEL)
     if (NOT ALLOW_UNSUPPORTED)
       message (FATAL_ERROR " **** parallel and thread-safety options are not supported **** ")
@@ -664,9 +724,9 @@ if (HDF5_ENABLE_THREADSAFE)
     endif ()
   endif ()
   set(THREADS_PREFER_PTHREAD_FLAG ON)
-  find_package(Threads)
-  if (NOT Threads_FOUND)
-    message (STATUS " **** thread-safe package not found - threads still might work **** ")
+  find_package(Threads REQUIRED)
+  if (Threads_FOUND)
+    set (H5_HAVE_THREADSAFE 1)
   endif ()
 endif ()
 
@@ -700,6 +760,11 @@ if (BUILD_TESTING)
       "Timeout in seconds for each test (default 1200=20minutes)"
   )
 
+  # Generate a list of timeouts based on DART_TESTING_TIMEOUT
+  math (EXPR CTEST_SHORT_TIMEOUT "${DART_TESTING_TIMEOUT} / 2")
+  math (EXPR CTEST_LONG_TIMEOUT "${DART_TESTING_TIMEOUT} * 2")
+  math (EXPR CTEST_VERY_LONG_TIMEOUT "${DART_TESTING_TIMEOUT} * 3")
+
   option (HDF5_TEST_VFD "Execute tests with different VFDs" OFF)
   mark_as_advanced (HDF5_TEST_VFD)
   if (HDF5_TEST_VFD)
@@ -707,6 +772,13 @@ if (BUILD_TESTING)
     mark_as_advanced (HDF5_TEST_FHEAP_VFD)
   endif ()
 
+  option (HDF5_TEST_VOL "Execute tests with different VOL connectors" OFF)
+  mark_as_advanced (HDF5_TEST_VOL)
+  if (HDF5_TEST_VOL)
+    option (HDF5_TEST_FHEAP_VOL "Execute fheap test with different VOL connectors" ON)
+    mark_as_advanced (HDF5_TEST_FHEAP_VOL)
+  endif ()
+
   option (HDF_TEST_EXPRESS "Control testing framework (0-3)" "0")
   mark_as_advanced (HDF_TEST_EXPRESS)
 
@@ -770,25 +842,20 @@ set (H5_FC_FUNC_ "H5_FC_FUNC_(name,NAME) name ## _")
 if (EXISTS "${HDF5_SOURCE_DIR}/fortran" AND IS_DIRECTORY "${HDF5_SOURCE_DIR}/fortran")
   option (HDF5_BUILD_FORTRAN "Build FORTRAN support" OFF)
   if (HDF5_BUILD_FORTRAN)
-
-    option (HDF5_ENABLE_F2003 "Enable FORTRAN 2003 Standard" ON)
-
     include (${HDF_RESOURCES_EXT_DIR}/HDFUseFortran.cmake)
 
     message (STATUS "Fortran compiler ID is ${CMAKE_Fortran_COMPILER_ID}")
     # Building with PGI requires CMake 3.3 or greater  because previous versions
     # of CMake add the wrong compiler flag for the PGI Fortran compiler.
-    if ("${CMAKE_Fortran_COMPILER_ID}" MATCHES "PGI" AND "${CMAKE_VERSION}" VERSION_LESS "3.3")
+    if (CMAKE_Fortran_COMPILER_ID MATCHES "PGI" AND CMAKE_VERSION VERSION_LESS "3.3")
       message (FATAL_ERROR " **** PGI FORTRAN REQUIRES CMAKE VERSION 3.3 OR GREATER **** ")
     endif ()
 
     include (${HDF_RESOURCES_DIR}/HDF5UseFortran.cmake)
     set (LINK_Fortran_LIBS ${LINK_LIBS})
 
-    if (HDF5_ENABLE_F2003)
-      if (NOT FORTRAN_HAVE_ISO_C_BINDING)
-        set (HDF5_ENABLE_F2003 OFF)
-      endif ()
+    if (NOT H5_FORTRAN_HAVE_ISO_C_BINDING)
+      message (FATAL_ERROR " **** Fortran compiler lacks required Fortran 2003 features; unsupported Fortran 2003 compiler, disable HDF5_BUILD_FORTRAN **** ")
     endif ()
 
     # Parallel IO usage requires MPI to be Linked and Included
@@ -864,4 +931,10 @@ endif ()
 #-----------------------------------------------------------------------------
 configure_file (${HDF_RESOURCES_DIR}/H5pubconf.h.in ${HDF5_BINARY_DIR}/H5pubconf.h @ONLY)
 
+#-----------------------------------------------------------------------------
+# Options for use by cross compiling and toolchains
+#-----------------------------------------------------------------------------
+option (HDF5_USE_PREGEN "Use pre-generated Files" OFF)
+option (HDF5_BATCH_H5DETECT "Use a batch command for running h5detect" OFF)
+
 include (CMakeInstallation.cmake)

COPYING

@@ -3,7 +3,7 @@ HDF5 (Hierarchical Data Format 5) Software Library and Utilities
 -----------------------------------------------------------------------------
 
 HDF5 (Hierarchical Data Format 5) Software Library and Utilities
-Copyright (c) 2006, The HDF Group. 
+Copyright (c) 2006-2018, The HDF Group. 
 
 NCSA HDF5 (Hierarchical Data Format 5) Software Library and Utilities
 Copyright (c) 1998-2006, The Board of Trustees of the University of Illinois. 
@@ -21,27 +21,27 @@ provided that the following conditions are met:
    this list of conditions, and the following disclaimer in the documentation 
    and/or materials provided with the distribution.
 
-3. In addition, redistributions of modified forms of the source or binary 
-   code must carry prominent notices stating that the original code was 
-   changed and the date of the change.
-
-4. All publications or advertising materials mentioning features or use of 
-   this software are asked, but not required, to acknowledge that it was 
-   developed by The HDF Group and by the National Center for Supercomputing 
-   Applications at the University of Illinois at Urbana-Champaign and 
-   credit the contributors.
-
-5. Neither the name of The HDF Group, the name of the University, nor the 
+3. Neither the name of The HDF Group, the name of the University, nor the 
    name of any Contributor may be used to endorse or promote products derived 
    from this software without specific prior written permission from 
    The HDF Group, the University, or the Contributor, respectively.
 
 DISCLAIMER: 
 THIS SOFTWARE IS PROVIDED BY THE HDF GROUP AND THE CONTRIBUTORS 
-"AS IS" WITH NO WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED.  In no 
-event shall The HDF Group or the Contributors be liable for any damages 
-suffered by the users arising out of the use of this software, even if 
-advised of the possibility of such damage. 
+"AS IS" WITH NO WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED. IN NO 
+EVENT SHALL THE HDF GROUP OR THE CONTRIBUTORS BE LIABLE FOR ANY DAMAGES 
+SUFFERED BY THE USERS ARISING OUT OF THE USE OF THIS SOFTWARE, EVEN IF 
+ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+ 
+You are under no obligation whatsoever to provide any bug fixes, patches, or 
+upgrades to the features, functionality or performance of the source code 
+("Enhancements") to anyone; however, if you choose to make your Enhancements 
+available either publicly, or directly to The HDF Group, without imposing a 
+separate written license agreement for such Enhancements, then you hereby 
+grant the following license: a non-exclusive, royalty-free perpetual license 
+to install, use, modify, prepare derivative works, incorporate into other 
+computer software, distribute, and sublicense such enhancements or derivative 
+works thereof, in binary and source code form.
 
 -----------------------------------------------------------------------------
 -----------------------------------------------------------------------------
@@ -55,9 +55,9 @@ http://support.hdfgroup.org/ftp/HDF5/releases/COPYING_LBNL_HDF5.
 -----------------------------------------------------------------------------
 
 Contributors:   National Center for Supercomputing Applications (NCSA) at 
-the University of Illinois, Fortner Software, Unidata Program Center (netCDF), 
-The Independent JPEG Group (JPEG), Jean-loup Gailly and Mark Adler (gzip), 
-and Digital Equipment Corporation (DEC).
+the University of Illinois, Fortner Software, Unidata Program Center 
+(netCDF), The Independent JPEG Group (JPEG), Jean-loup Gailly and Mark Adler 
+(gzip), and Digital Equipment Corporation (DEC).
 
 -----------------------------------------------------------------------------
  
@@ -98,8 +98,9 @@ and/or accompanying materials:
 -----------------------------------------------------------------------------
 
 HDF5 is available with the SZIP compression library but SZIP is not part 
-of HDF5 and has separate copyright and license terms. See “Szip Compression 
-in HDF Products” (https://support.hdfgroup.org/doc_resource/SZIP/) for further details.
+of HDF5 and has separate copyright and license terms. See SZIP Compression 
+in HDF Products (www.hdfgroup.org/doc_resource/SZIP/) for further details.
 
 -----------------------------------------------------------------------------
 
+

CTestConfig.cmake

@@ -19,12 +19,23 @@ set (CTEST_PROJECT_NAME "HDF5")
 set (CTEST_NIGHTLY_START_TIME "18:00:00 CST")
 
 set (CTEST_DROP_METHOD "http")
-if (CDASH_LOCAL)
-  set (CTEST_DROP_SITE "cdash-internal.hdfgroup.org")
-  set (CTEST_DROP_LOCATION "/submit.php?project=HDF5Trunk")
+if (CTEST_DROP_SITE_INIT)
+  set (CTEST_DROP_SITE "${CTEST_DROP_SITE_INIT}")
 else ()
-  set (CTEST_DROP_SITE "cdash.hdfgroup.org")
-  set (CTEST_DROP_LOCATION "/submit.php?project=HDF5")
+  if (CDASH_LOCAL)
+    set (CTEST_DROP_SITE "cdash-internal.hdfgroup.org")
+  else ()
+    set (CTEST_DROP_SITE "cdash.hdfgroup.org")
+  endif ()
+endif ()
+if (CTEST_DROP_LOCATION_INIT)
+  set (CTEST_DROP_LOCATION "${CTEST_DROP_LOCATION_INIT}")
+else ()
+  if (CDASH_LOCAL)
+    set (CTEST_DROP_LOCATION "/submit.php?project=HDF5Trunk")
+  else ()
+    set (CTEST_DROP_LOCATION "/submit.php?project=HDF5")
+  endif ()
 endif ()
 set (CTEST_DROP_SITE_CDASH TRUE)
 
@@ -34,9 +45,9 @@ set (VALGRIND_COMMAND_OPTIONS "-v --tool=memcheck --leak-check=full --track-fds=
 set (CTEST_MEMORYCHECK_COMMAND "/usr/bin/valgrind")
 set (CTEST_MEMORYCHECK_COMMAND_OPTIONS "-v --tool=memcheck --leak-check=full --track-fds=yes --num-callers=50 --show-reachable=yes --track-origins=yes --malloc-fill=0xff --free-fill=0xfe")
 
-set (CTEST_TEST_TIMEOUT 600 CACHE STRING
+set (CTEST_TEST_TIMEOUT 1200 CACHE STRING
     "Maximum time allowed before CTest will kill the test.")
-set (DART_TESTING_TIMEOUT 600 CACHE STRING
+set (DART_TESTING_TIMEOUT 1200 CACHE STRING
     "Maximum time allowed before CTest will kill the test." FORCE)
 
 SET(CTEST_SUBMIT_RETRY_DELAY 20 CACHE STRING

MANIFEST

@@ -23,6 +23,7 @@
 ./.autom4te.cfg        _DO_NOT_DISTRIBUTE_
 ./.h5chkright.ini      _DO_NOT_DISTRIBUTE_
 ./ACKNOWLEDGMENTS
+./BRANCH.md            _DO_NOT_DISTRIBUTE_
 ./COPYING
 ./COPYING_LBNL_HDF5
 ./MANIFEST
@@ -92,6 +93,20 @@
 ./bin/timekeeper      _DO_NOT_DISTRIBUTE_
 ./bin/trace
 ./bin/yodconfigure
+./bin/batch/cori_ctestP.sl.in.cmake
+./bin/batch/cori_ctestS.sl.in.cmake
+./bin/batch/cori_knl_ctestP.sl.in.cmake
+./bin/batch/cori_knl_ctestS.sl.in.cmake
+./bin/batch/ctestP.lsf.in.cmake
+./bin/batch/ctestP.sl.in.cmake
+./bin/batch/ctestS.lsf.in.cmake
+./bin/batch/ctestS.sl.in.cmake
+./bin/batch/knl_ctestP.sl.in.cmake
+./bin/batch/knl_ctestS.sl.in.cmake
+./bin/batch/knl_H5detect.sl.in.cmake
+./bin/batch/ray_ctestP.lsf.in.cmake
+./bin/batch/ray_ctestS.lsf.in.cmake
+./bin/batch/raybsub
 ./bin/pkgscrpts/h5rmflags                  _DO_NOT_DISTRIBUTE_
 ./bin/pkgscrpts/makeHDF5BinaryTarfiles.pl  _DO_NOT_DISTRIBUTE_
 ./bin/pkgscrpts/makeInternalREADME.pl      _DO_NOT_DISTRIBUTE_
@@ -445,7 +460,10 @@
 ./release_docs/INSTALL_CMake.txt
 ./release_docs/INSTALL_Cygwin.txt
 ./release_docs/INSTALL_parallel
+./release_docs/INSTALL_Warnings.txt
 ./release_docs/INSTALL_Windows.txt
+./release_docs/README_HDF5_CMake
+./release_docs/README_HPC
 ./release_docs/RELEASE.txt
 ./release_docs/USING_HDF5_CMake.txt
 ./release_docs/USING_HDF5_VS.txt
@@ -481,7 +499,6 @@
 ./src/H5Apublic.h
 ./src/H5AC.c
 ./src/H5ACdbg.c
-./src/H5AClog.c
 ./src/H5ACmodule.h
 ./src/H5ACmpio.c
 ./src/H5ACpkg.h
@@ -494,7 +511,6 @@
 ./src/H5Bmodule.h
 ./src/H5Bpkg.h
 ./src/H5Bprivate.h
-./src/H5Bpublic.h
 ./src/H5B2.c
 ./src/H5B2cache.c
 ./src/H5B2dbg.c
@@ -505,7 +521,6 @@
 ./src/H5B2module.h
 ./src/H5B2pkg.h
 ./src/H5B2private.h
-./src/H5B2public.h
 ./src/H5B2stat.c
 ./src/H5B2test.c
 ./src/H5C.c
@@ -513,6 +528,9 @@
 ./src/H5Cepoch.c
 ./src/H5Cimage.c
 ./src/H5Clog.c
+./src/H5Clog.h
+./src/H5Clog_json.c
+./src/H5Clog_trace.c
 ./src/H5Cmodule.h
 ./src/H5Cmpio.c
 ./src/H5Cpkg.h
@@ -525,8 +543,8 @@
 ./src/H5CS.c
 ./src/H5CSprivate.h
 ./src/H5CX.c
-./src/H5CXprivate.h
 ./src/H5CXmodule.h
+./src/H5CXprivate.h
 ./src/H5D.c
 ./src/H5Dbtree.c
 ./src/H5Dbtree2.c
@@ -575,6 +593,7 @@
 ./src/H5EAsblock.c
 ./src/H5EAstat.c
 ./src/H5EAtest.c
+./src/H5ESpublic.h
 ./src/H5F.c
 ./src/H5Faccum.c
 ./src/H5Fcwfs.c
@@ -649,7 +668,6 @@
 ./src/H5FSmodule.h
 ./src/H5FSpkg.h
 ./src/H5FSprivate.h
-./src/H5FSpublic.h
 ./src/H5FSsection.c
 ./src/H5FSstat.c
 ./src/H5FStest.c
@@ -689,7 +707,6 @@
 ./src/H5HFmodule.h
 ./src/H5HFpkg.h
 ./src/H5HFprivate.h
-./src/H5HFpublic.h
 ./src/H5HFsection.c
 ./src/H5HFspace.c
 ./src/H5HFstat.c
@@ -701,7 +718,6 @@
 ./src/H5HGmodule.h
 ./src/H5HGpkg.h
 ./src/H5HGprivate.h
-./src/H5HGpublic.h
 ./src/H5HGquery.c
 ./src/H5HL.c
 ./src/H5HLcache.c
@@ -712,7 +728,6 @@
 ./src/H5HLpkg.h
 ./src/H5HLprfx.c
 ./src/H5HLprivate.h
-./src/H5HLpublic.h
 ./src/H5HP.c
 ./src/H5HPprivate.h
 ./src/H5I.c
@@ -885,6 +900,25 @@
 ./src/H5Tvlen.c
 ./src/H5TS.c
 ./src/H5TSprivate.h
+./src/H5VL.c
+./src/H5VLcallback.c
+./src/H5VLint.c
+./src/H5VLmodule.h
+./src/H5VLnative.c
+./src/H5VLnative.h
+./src/H5VLnative_attr.c
+./src/H5VLnative_dataset.c
+./src/H5VLnative_datatype.c
+./src/H5VLnative_file.c
+./src/H5VLnative_group.c
+./src/H5VLnative_link.c
+./src/H5VLnative_object.c
+./src/H5VLnative_private.h
+./src/H5VLpassthru.c
+./src/H5VLpassthru.h
+./src/H5VLpkg.h
+./src/H5VLprivate.h
+./src/H5VLpublic.h
 ./src/H5VM.c
 ./src/H5VMprivate.h
 ./src/H5WB.c
@@ -944,6 +978,7 @@
 ./test/cross_read.c
 ./test/dangle.c
 ./test/deflate.h5
+./test/del_many_dense_attrs.c
 ./test/direct_chunk.c
 ./test/dsets.c
 ./test/dt_arith.c
@@ -997,6 +1032,7 @@
 ./test/gen_deflate.c
 ./test/gen_file_image.c
 ./test/gen_filespace.c
+./test/gen_filters.c
 ./test/gen_mergemsg.c
 ./test/gen_new_array.c
 ./test/gen_new_fill.c
@@ -1026,11 +1062,15 @@
 ./test/h5test.h
 ./test/hyperslab.c
 ./test/istore.c
+./test/json_vol.c
+./test/json_vol_connector.c
+./test/json_vol_connector.h
 ./test/le_data.h5
 ./test/le_extlink1.h5
 ./test/le_extlink2.h5
 ./test/lheap.c
 ./test/links.c
+./test/memleak_H5O_dtype_decode_helper_H5Odtype.h5
 ./test/mergemsg.h5
 ./test/mf.c
 ./test/mount.c
@@ -1040,6 +1080,8 @@
 ./test/noencoder.h5
 ./test/none.h5
 ./test/ntypes.c
+./test/null_vol_connector.c
+./test/null_vol_connector.h
 ./test/ohdr.c
 ./test/objcopy.c
 ./test/page_buffer.c
@@ -1075,17 +1117,21 @@
 ./test/tcheck_version.c
 ./test/tconfig.c
 ./test/tcoords.c
+./test/testabort_fail.sh.in
 ./test/testcheck_version.sh.in
 ./test/testerror.sh.in
 ./test/testlinks_env.sh.in
-./test/test_filenotclosed.sh.in
 ./test/test_filter_plugin.sh.in
+./test/test_filters_le.h5
+./test/test_filters_be.h5
 ./test/testflushrefresh.sh.in
 ./test/testframe.c
 ./test/testhdf5.c
 ./test/testhdf5.h
+./test/test_json_vol.sh.in
 ./test/testlibinfo.sh.in
 ./test/test_usecases.sh.in
+./test/test_vol_plugin.sh.in
 ./test/testmeta.c
 ./test/testswmr.sh.in
 ./test/testvdsswmr.sh.in
@@ -1127,16 +1173,14 @@
 ./test/use_common.c
 ./test/use_disable_mdc_flushes.c
 ./test/use.h
-./test/vfd.c
-./test/test_filters_le.h5
-./test/test_filters_be.h5
-./test/gen_filters.c
-./test/chunk_info.c
 ./test/vds.c
 ./test/vds_swmr.h
 ./test/vds_swmr_gen.c
 ./test/vds_swmr_reader.c
 ./test/vds_swmr_writer.c
+./test/vfd.c
+./test/vol.c
+./test/vol_plugin.c
 
 ./test/testfiles/err_compat_1
 ./test/testfiles/err_compat_2
@@ -1247,6 +1291,7 @@
 ./testpar/t_cache_image.c
 ./testpar/t_chunk_alloc.c
 ./testpar/t_coll_chunk.c
+./testpar/t_coll_md_read.c
 ./testpar/t_dset.c
 ./testpar/t_file.c
 ./testpar/t_file_image.c
@@ -1266,6 +1311,7 @@
 ./testpar/t_span_tree.c
 ./testpar/t_init_term.c
 ./testpar/testpar.h
+./testpar/testpflush.sh.in
 ./testpar/testphdf5.c
 ./testpar/testphdf5.h
 
@@ -1372,14 +1418,17 @@
 ./tools/test/h5format_convert/testfiles/h5fc_v_err.ddl.err
 ./tools/test/h5format_convert/testfiles/h5fc_v_non_chunked.ddl
 ./tools/test/h5format_convert/testfiles/h5fc_d_file.ddl
+./tools/test/h5format_convert/testfiles/h5fc_d_file.ddl.err
+./tools/test/h5format_convert/testfiles/h5fc_d_file-d.ddl
 ./tools/test/h5format_convert/testfiles/h5fc_v_ndata_bt1.ddl
 ./tools/test/h5format_convert/testfiles/h5fc_dname.ddl
-./tools/test/h5format_convert/testfiles/h5fc_nonexistdset_file.ddl
+./tools/test/h5format_convert/testfiles/h5fc_dname.err
+./tools/test/h5format_convert/testfiles/h5fc_nonexistfile.ddl.err
+./tools/test/h5format_convert/testfiles/h5fc_nonexistdset_file.ddl.err
 ./tools/test/h5format_convert/testfiles/h5fc_help.ddl
 ./tools/test/h5format_convert/testfiles/h5fc_v_all.ddl
 ./tools/test/h5format_convert/testfiles/h5fc_nooption.ddl
 ./tools/test/h5format_convert/testfiles/h5fc_v_n_1d.ddl
-./tools/test/h5format_convert/testfiles/h5fc_nonexistfile.ddl
 ./tools/test/h5format_convert/testfiles/h5fc_non_v3.h5
 ./tools/test/h5format_convert/testfiles/h5fc_edge_v3.h5
 ./tools/test/h5format_convert/testfiles/h5fc_err_level.h5
@@ -1449,6 +1498,11 @@
 ./tools/test/h5ls/vds_prefix/tvds-4.ls
 ./tools/test/h5ls/vds_prefix/tvds-5.ls
 
+# h5ls test error files
+./tools/test/h5ls/errfiles/nosuchfile.err
+./tools/test/h5ls/errfiles/textlinksrc-nodangle-1.err
+./tools/test/h5ls/errfiles/tgroup-1.err
+
 # h5copy sources
 ./tools/src/h5copy/Makefile.am
 ./tools/src/h5copy/h5copy.c
@@ -1504,10 +1558,11 @@
 ./tools/test/misc/testfiles/h5clear_less_after_size.ddl
 ./tools/test/misc/testfiles/h5clear_less_before_size.ddl
 ./tools/test/misc/testfiles/h5clear_missing_file.ddl
+./tools/test/misc/testfiles/h5clear_missing_file.err
 ./tools/test/misc/testfiles/h5clear_noclose_after_size.ddl
 ./tools/test/misc/testfiles/h5clear_noclose_before_size.ddl
-./tools/test/misc/testfiles/h5clear_no_mdc_image.ddl
-./tools/test/misc/testfiles/h5clear_open_fail.ddl
+./tools/test/misc/testfiles/h5clear_no_mdc_image.err
+./tools/test/misc/testfiles/h5clear_open_fail.err
 ./tools/test/misc/testfiles/h5clear_status_noclose_after_size.ddl
 ./tools/test/misc/testfiles/h5clear_usage.ddl
 ./tools/test/misc/testfiles/h5clear_user_equal_after_size.ddl
@@ -1561,10 +1616,6 @@
 ./tools/test/h5stat/testh5stat.sh.in
 ./tools/test/h5stat/testfiles/h5stat_dims1.ddl
 ./tools/test/h5stat/testfiles/h5stat_dims2.ddl
-./tools/test/h5stat/testfiles/h5stat_err1_dims.ddl
-./tools/test/h5stat/testfiles/h5stat_err1_links.ddl
-./tools/test/h5stat/testfiles/h5stat_err1_numattrs.ddl
-./tools/test/h5stat/testfiles/h5stat_err2_numattrs.ddl
 ./tools/test/h5stat/testfiles/h5stat_err_old_fill.h5
 ./tools/test/h5stat/testfiles/h5stat_err_old_fill.ddl
 ./tools/test/h5stat/testfiles/h5stat_err_old_layout.h5
@@ -1602,6 +1653,15 @@
 ./tools/test/h5stat/testfiles/h5stat_threshold.h5
 ./tools/test/h5stat/testfiles/h5stat_tsohm.ddl
 ./tools/test/h5stat/testfiles/h5stat_tsohm.h5
+./tools/test/h5stat/testfiles/h5stat_err_refcount.err
+./tools/test/h5stat/testfiles/h5stat_err_old_layout.err
+./tools/test/h5stat/testfiles/h5stat_err_old_fill.err
+./tools/test/h5stat/testfiles/h5stat_err1_dims.err
+./tools/test/h5stat/testfiles/h5stat_err1_links.err
+./tools/test/h5stat/testfiles/h5stat_err1_numattrs.err
+./tools/test/h5stat/testfiles/h5stat_err2_numattrs.err
+./tools/test/h5stat/testfiles/h5stat_notexist.err
+./tools/test/h5stat/testfiles/h5stat_nofile.err
 
 # h5dump test files
 ./tools/testfiles/charsets.h5
@@ -1797,6 +1857,8 @@
 ./tools/testfiles/tints4dims.h5
 ./tools/testfiles/tintsattrs.ddl
 ./tools/testfiles/tintsattrs.h5
+./tools/testfiles/tintsnodata.ddl
+./tools/testfiles/tintsnodata.h5
 ./tools/testfiles/tlarge_objname.ddl
 ./tools/testfiles/tlarge_objname.h5
 ./tools/testfiles/tldouble.h5
@@ -2261,7 +2323,6 @@
 ./tools/test/h5diff/testfiles/h5diff_600.txt
 ./tools/test/h5diff/testfiles/h5diff_601.txt
 ./tools/test/h5diff/testfiles/h5diff_601_ERR.err
-./tools/test/h5diff/testfiles/h5diff_601_ERR.txt
 ./tools/test/h5diff/testfiles/h5diff_603.txt
 ./tools/test/h5diff/testfiles/h5diff_604.txt
 ./tools/test/h5diff/testfiles/h5diff_605.txt
@@ -2368,21 +2429,12 @@
 ./tools/test/h5diff/testfiles/h5diff_452.txt
 ./tools/test/h5diff/testfiles/h5diff_453.txt
 ./tools/test/h5diff/testfiles/h5diff_454.txt
-./tools/test/h5diff/testfiles/h5diff_454_ERR.err
-./tools/test/h5diff/testfiles/h5diff_454_ERR.txt
+./tools/test/h5diff/testfiles/dangling_link.err
 ./tools/test/h5diff/testfiles/h5diff_455.txt
-./tools/test/h5diff/testfiles/h5diff_455_ERR.err
-./tools/test/h5diff/testfiles/h5diff_455_ERR.txt
 ./tools/test/h5diff/testfiles/h5diff_456.txt
 ./tools/test/h5diff/testfiles/h5diff_457.txt
-./tools/test/h5diff/testfiles/h5diff_457_ERR.err
-./tools/test/h5diff/testfiles/h5diff_457_ERR.txt
 ./tools/test/h5diff/testfiles/h5diff_458.txt
-./tools/test/h5diff/testfiles/h5diff_458_ERR.err
-./tools/test/h5diff/testfiles/h5diff_458_ERR.txt
 ./tools/test/h5diff/testfiles/h5diff_459.txt
-./tools/test/h5diff/testfiles/h5diff_459_ERR.err
-./tools/test/h5diff/testfiles/h5diff_459_ERR.txt
 ./tools/test/h5diff/testfiles/h5diff_465.txt
 ./tools/test/h5diff/testfiles/h5diff_466.txt
 ./tools/test/h5diff/testfiles/h5diff_467.txt
@@ -2472,6 +2524,7 @@
 ./tools/test/h5diff/testfiles/tudfilter.h5
 ./tools/test/h5diff/testfiles/tudfilter2.h5
 ./tools/test/h5diff/testfiles/h5diff_ud.txt
+./tools/test/h5diff/testfiles/h5diff_udfail.err
 ./tools/test/h5diff/testfiles/h5diff_udfail.txt
 ./tools/test/h5diff/testfiles/diff_strings1.h5
 ./tools/test/h5diff/testfiles/diff_strings2.h5
@@ -2572,6 +2625,7 @@
 ./tools/test/h5copy/testfiles/h5copy_extlinks_src.h5
 ./tools/test/h5copy/testfiles/h5copy_extlinks_trg.h5
 ./tools/test/h5copy/testfiles/h5copy_extlinks_src.out.ls
+./tools/test/h5copy/testfiles/h5copy_misc1.err
 ./tools/test/h5copy/testfiles/h5copy_misc1.out
 ./tools/test/h5copy/testfiles/h5copytst_new.h5
 ./tools/test/h5copy/testfiles/h5copytst_new.out.ls
@@ -2601,6 +2655,7 @@
 ./tools/test/perform/build_h5perf_alone.sh
 ./tools/test/perform/build_h5perf_serial_alone.sh
 ./tools/test/perform/chunk.c
+./tools/test/perform/chunk_cache.c
 ./tools/test/perform/direct_write_perf.c
 ./tools/test/perform/gen_report.pl
 ./tools/test/perform/iopipe.c
@@ -2739,16 +2794,17 @@
 
 # expected test output from testing h5watch
 #
-./hl/tools/testfiles/w-err-cmpd1.ddl
-./hl/tools/testfiles/w-err-cmpd2.ddl
-./hl/tools/testfiles/w-err-cmpd3.ddl
-./hl/tools/testfiles/w-err-cmpd4.ddl
-./hl/tools/testfiles/w-err-cmpd5.ddl
-./hl/tools/testfiles/w-err-dset1.ddl
-./hl/tools/testfiles/w-err-dset2.ddl
-./hl/tools/testfiles/w-err-dset-nomax.ddl
-./hl/tools/testfiles/w-err-dset-none.ddl
-./hl/tools/testfiles/w-err-file.ddl
+./hl/tools/testfiles/w-err-std.ddl
+./hl/tools/testfiles/w-err-cmpd1.err
+./hl/tools/testfiles/w-err-cmpd2.err
+./hl/tools/testfiles/w-err-cmpd3.err
+./hl/tools/testfiles/w-err-cmpd4.err
+./hl/tools/testfiles/w-err-cmpd5.err
+./hl/tools/testfiles/w-err-dset1.err
+./hl/tools/testfiles/w-err-dset2.err
+./hl/tools/testfiles/w-err-dset-nomax.err
+./hl/tools/testfiles/w-err-dset-none.err
+./hl/tools/testfiles/w-err-file.err
 ./hl/tools/testfiles/w-err-poll0.ddl
 ./hl/tools/testfiles/w-err-poll.ddl
 ./hl/tools/testfiles/w-err-width.ddl
@@ -2850,6 +2906,32 @@
 ./java/src/jni/h5oImp.h
 ./java/src/jni/h5pImp.c
 ./java/src/jni/h5pImp.h
+./java/src/jni/h5pACPLImp.c
+./java/src/jni/h5pACPLImp.h
+./java/src/jni/h5pDAPLImp.c
+./java/src/jni/h5pDAPLImp.h
+./java/src/jni/h5pDCPLImp.c
+./java/src/jni/h5pDCPLImp.h
+./java/src/jni/h5pDXPLImp.c
+./java/src/jni/h5pDXPLImp.h
+./java/src/jni/h5pFAPLImp.c
+./java/src/jni/h5pFAPLImp.h
+./java/src/jni/h5pFCPLImp.c
+./java/src/jni/h5pFCPLImp.h
+./java/src/jni/h5pGAPLImp.c
+./java/src/jni/h5pGAPLImp.h
+./java/src/jni/h5pGCPLImp.c
+./java/src/jni/h5pGCPLImp.h
+./java/src/jni/h5pLAPLImp.c
+./java/src/jni/h5pLAPLImp.h
+./java/src/jni/h5pLCPLImp.c
+./java/src/jni/h5pLCPLImp.h
+./java/src/jni/h5pOCPLImp.c
+./java/src/jni/h5pOCPLImp.h
+./java/src/jni/h5pOCpyPLImp.c
+./java/src/jni/h5pOCpyPLImp.h
+./java/src/jni/h5pStrCPLImp.c
+./java/src/jni/h5pStrCPLImp.h
 ./java/src/jni/h5plImp.c
 ./java/src/jni/h5plImp.h
 ./java/src/jni/h5rImp.c
@@ -2858,6 +2940,8 @@
 ./java/src/jni/h5sImp.h
 ./java/src/jni/h5tImp.c
 ./java/src/jni/h5tImp.h
+./java/src/jni/h5vlImp.c
+./java/src/jni/h5vlImp.h
 ./java/src/jni/h5zImp.c
 ./java/src/jni/h5zImp.h
 
@@ -3096,6 +3180,7 @@
 ./java/test/testfiles/JUnit-TestH5Tparams.txt
 ./java/test/testfiles/JUnit-TestH5Tbasic.txt
 ./java/test/testfiles/JUnit-TestH5T.txt
+./java/test/testfiles/JUnit-TestH5VL.txt
 ./java/test/testfiles/JUnit-TestH5Z.txt
 ./java/test/h5ex_g_iterate.orig
 ./java/test/TestH5.java
@@ -3133,6 +3218,7 @@
 ./java/test/TestH5Tparams.java
 ./java/test/TestH5Tbasic.java
 ./java/test/TestH5T.java
+./java/test/TestH5VL.java
 ./java/test/TestH5Z.java
 ./java/test/TestAll.java
 
@@ -3144,6 +3230,11 @@
 ./java/lib/ext/slf4j-simple-1.7.25.jar
 
 # CMake-specific Files
+./config/toolchain/crayle.cmake
+./config/toolchain/GCC.cmake
+./config/toolchain/intel.cmake
+./config/toolchain/PGI.cmake
+
 ./config/cmake/cacheinit.cmake
 ./config/cmake/CMakeFindJavaCommon.cmake
 ./config/cmake/ConversionTests.c
@@ -3173,6 +3264,8 @@
 ./config/cmake/UseJavaSymlinks.cmake
 ./config/cmake/userblockTest.cmake
 ./config/cmake/vfdTest.cmake
+./config/cmake/volTest.cmake
+./config/cmake/wait_H5Tinit.cmake
 
 ./config/cmake_ext_mod/ConfigureChecks.cmake
 ./config/cmake_ext_mod/CTestCustom.cmake
@@ -3198,7 +3291,6 @@
 
 # CMake-specific Examples Files
 ./config/cmake/HDF5_Examples.cmake.in
-./config/cmake/HDF518_Examples.cmake.in
 ./release_docs/USING_CMake_Examples.txt
 
 ./CMakeLists.txt
@@ -3212,6 +3304,7 @@
 ./c++/src/CMakeLists.txt
 ./c++/test/CMakeLists.txt
 ./c++/test/CMakeTests.cmake
+./c++/test/CMakeVFDTests.cmake
 ./examples/CMakeLists.txt
 ./examples/CMakeTests.cmake
 ./examples/run-all-ex.sh
@@ -3251,10 +3344,12 @@
 ./test/CMakeLists.txt
 ./test/CMakeTests.cmake
 ./test/CMakeVFDTests.cmake
+./test/CMakeVOLTests.cmake
 ./test/flushrefreshTest.cmake
 ./test/ShellTests.cmake
 ./testpar/CMakeLists.txt
 ./testpar/CMakeTests.cmake
+./testpar/CMakeVFDTests.cmake
 ./tools/CMakeLists.txt
 ./tools/lib/CMakeLists.txt
 ./tools/src/CMakeLists.txt
@@ -3287,6 +3382,7 @@
 ./tools/src/h5repack/CMakeLists.txt
 ./tools/test/h5repack/CMakeLists.txt
 ./tools/test/h5repack/CMakeTests.cmake
+./tools/test/h5repack/CMakeVFDTests.cmake
 ./tools/src/h5stat/CMakeLists.txt
 ./tools/test/h5stat/CMakeLists.txt
 ./tools/test/h5stat/CMakeTests.cmake
@@ -3306,6 +3402,11 @@
 ./config/cmake/scripts/HDF5config.cmake
 ./config/cmake/scripts/HDF5options.cmake
 
+# CMake-specific HPC Scripts
+./config/cmake/scripts/HPC/sbatch-HDF5options.cmake
+./config/cmake/scripts/HPC/bsub-HDF5options.cmake
+./config/cmake/scripts/HPC/raybsub-HDF5options.cmake
+
 # Files generated by autogen
 ./aclocal.m4
 ./bin/compile

Makefile.am

@@ -186,6 +186,15 @@ check-vfd:
 	  fi;                                                          \
 	done
 
+# Run tests with different Virtual Object Layer Connectors.
+# Currently, only invoke check-vol in the test directory.
+check-vol:
+	for d in src test; do                                 \
+	  if test $$d != .; then                                       \
+	    (cd $$d && $(MAKE) $(AM_MAKEFLAGS) $@) || exit 1;          \
+	  fi;                                                          \
+	done
+
 # Automake wants to make config.status depend on configure.  This
 # makes sense, but config.status can't always be regenerated
 # properly, which can cause builds to fail.

README.txt

@@ -1,4 +1,4 @@
-HDF5 version 1.11.2 currently under development
+HDF5 version 1.11.4 currently under development
 
 ------------------------------------------------------------------------------
 Please refer to the release_docs/INSTALL file for installation instructions.

bin/batch/cori_ctestP.sl.in.cmake

@@ -0,0 +1,17 @@
+#!/bin/bash
+
+#SBATCH -C haswell
+#SBATCH --nodes=1
+#SBATCH -t 00:30:00
+#SBATCH --mail-type=BEGIN,END,FAIL
+##SBATCH --mail-user=<username>@sandia.gov
+#SBATCH --export=ALL
+#SBATCH --job-name=h5_ctestP
+
+cd @HDF5_BINARY_DIR@
+CMD="ctest . -R MPI_TEST_ -E t_cache_image -C Release -T test"
+
+echo "Run $CMD. Test output will be in build/ctestP.out"
+$CMD >& ctestP.out
+echo "Done running $CMD"
+

bin/batch/cori_ctestS.sl.in.cmake

@@ -0,0 +1,16 @@
+#!/bin/bash
+
+#SBATCH -C haswell
+#SBATCH --nodes=1
+#SBATCH -t 00:30:00
+#SBATCH --mail-type=BEGIN,END,FAIL
+##SBATCH --mail-user=<username>@sandia.gov
+#SBATCH --export=ALL
+#SBATCH --job-name=h5_ctestS
+
+cd @HDF5_BINARY_DIR@
+CMD="ctest . -E MPI_TEST_ -C Release -j 32 -T test"
+
+echo "Run $CMD. Test output will be in build/ctestS.out"
+$CMD  >& ctestS.out
+echo "Done running $CMD"

bin/batch/cori_knl_ctestP.sl.in.cmake

@@ -0,0 +1,17 @@
+#!/bin/bash
+
+#SBATCH -C knl,quad,cache
+#SBATCH --nodes=1
+#SBATCH -t 00:30:00
+#SBATCH --mail-type=BEGIN,END,FAIL
+##SBATCH --mail-user=<username>@sandia.gov
+#SBATCH --export=ALL
+#SBATCH --job-name=h5_ctestP
+
+cd @HDF5_BINARY_DIR@
+CMD="ctest . -R MPI_TEST_ -E t_cache_image -C Release -T test"
+
+echo "Run $CMD. Test output will be in build/ctestP.out"
+$CMD >& ctestP.out
+echo "Done running $CMD"
+

bin/batch/cori_knl_ctestS.sl.in.cmake

@@ -0,0 +1,16 @@
+#!/bin/bash
+
+#SBATCH -C knl,quad,cache
+#SBATCH --nodes=1
+#SBATCH -t 00:30:00
+#SBATCH --mail-type=BEGIN,END,FAIL
+##SBATCH --mail-user=<username>@sandia.gov
+#SBATCH --export=ALL
+#SBATCH --job-name=h5_ctestS
+
+cd @HDF5_BINARY_DIR@
+CMD="ctest . -E MPI_TEST_ -C Release -j 32 -T test"
+
+echo "Run $CMD. Test output will be in build/ctestS.out"
+$CMD  >& ctestS.out
+echo "Done running $CMD"

bin/batch/ctestP.lsf.in.cmake

@@ -0,0 +1,19 @@
+#!/bin/tcsh
+### LSF syntax
+#BSUB -nnodes 1                  #number of nodes
+#BSUB -W 30                      #walltime in minutes
+#BSUB -G guests                  #account
+#BSUB -e ctestPerrors.txt        #stderr
+#BSUB -o ctestPoutput.txt        #stdout
+#BSUB -J hdf5_ctestP             #job
+##BSUB -q pbatch                 #queue to use
+#BSUB -q pdebug
+
+##date; hostname
+##echo -n 'JobID is '; echo $LSB_JOBID
+
+cd @HDF5_BINARY_DIR@
+echo "Run parallel test command. Test output will be in build/ctestP.out"
+ctest . -R 'TEST_PAR|PH5DIFF|PERFORM' -E t_cache_image -C Release -T test >& ctestP.out
+
+echo "Done running ctest parallel command."

bin/batch/ctestP.sl.in.cmake

@@ -0,0 +1,16 @@
+#!/bin/bash
+
+#SBATCH --nodes=1
+#SBATCH -t 00:30:00
+#SBATCH --mail-type=BEGIN,END,FAIL
+##SBATCH --mail-user=<username>@sandia.gov
+#SBATCH --export=ALL
+#SBATCH --job-name=h5_ctestP
+
+cd @HDF5_BINARY_DIR@
+CMD="ctest . -R MPI_TEST_ -E t_cache_image -C Release -T test"
+
+echo "Run $CMD. Test output will be in build/ctestP.out"
+$CMD >& ctestP.out
+echo "Done running $CMD"
+

bin/batch/ctestS.lsf.in.cmake

@@ -0,0 +1,18 @@
+#!/bin/tcsh
+### LSF syntax
+#BSUB -nnodes 1                  #number of nodes
+#BSUB -W 29                      #walltime in minutes
+#BSUB -G guests                  #account
+#BSUB -e ctestSerrors.txt        #stderr
+#BSUB -o ctestSoutput.txt        #stdout
+#BSUB -J hdf5_ctestS             #job
+##BSUB -q pbatch                 #queue to use
+#BSUB -q pdebug
+
+cd @HDF5_BINARY_DIR@
+echo "Run command. Test output will be in build/ctestS.out"
+ctest . -E 'TEST_PAR|PH5DIFF|PERFORM' -C Release -j 32 -T test >& ctestS.out
+
+##$CMD  >& ctestS.out
+echo "Done running command."
+

bin/batch/ctestS.sl.in.cmake

@@ -0,0 +1,15 @@
+#!/bin/bash
+
+#SBATCH --nodes=1
+#SBATCH -t 00:30:00
+#SBATCH --mail-type=BEGIN,END,FAIL
+##SBATCH --mail-user=<username>@sandia.gov
+#SBATCH --export=ALL
+#SBATCH --job-name=h5_ctestS
+
+cd @HDF5_BINARY_DIR@
+CMD="ctest . -E MPI_TEST_ -C Release -j 32 -T test"
+
+echo "Run $CMD. Test output will be in build/ctestS.out"
+$CMD  >& ctestS.out
+echo "Done running $CMD"

bin/batch/knl_H5detect.sl.in.cmake

@@ -0,0 +1,20 @@
+#!/bin/bash
+
+#SBATCH -p knl -C quad
+#SBATCH --nodes=1
+#SBATCH -t 00:10:00
+#SBATCH --mail-type=BEGIN,END,FAIL
+#SBATCH --mail-user=<username>@sandia.gov
+#SBATCH --export=ALL
+#SBATCH --job-name=knl_h5detect
+
+
+# Inputs:  Build directory, output file name, executable file name (username/email if available).
+PROGNAME=H5detect
+OUTPUT=H5Tinit.c
+
+CMD="@HDF5_BINARY_DIR@/bin/${PROGNAME} @HDF5_GENERATED_SOURCE_DIR@/${OUTPUT}"
+echo "Run $CMD"
+srun -n 1 $CMD
+echo "Done running $CMD"
+

bin/batch/knl_ctestP.sl.in.cmake

@@ -0,0 +1,18 @@
+#!/bin/bash
+
+#SBATCH -p knl -C quad,cache
+#SBATCH --nodes=1
+#SBATCH -t 00:30:00
+#SBATCH --mail-type=BEGIN,END,FAIL
+##SBATCH --mail-user=<username>@sandia.gov
+#SBATCH --export=ALL
+#SBATCH --job-name=h5_ctestS
+
+cd @HDF5_BINARY_DIR@
+#run parallel tests except t_cache_image test
+CMD="ctest . -R MPI_TEST_ -E t_cache_image -C Release -T test"
+
+echo "Run $CMD. Test output will be in build/ctestP.out"
+$CMD >& ctestP.out
+echo "Done running $CMD"
+

bin/batch/knl_ctestS.sl.in.cmake

@@ -0,0 +1,17 @@
+#!/bin/bash
+
+#SBATCH -p knl -C quad,cache
+#SBATCH --nodes=1
+#SBATCH -t 00:30:00
+#SBATCH --mail-type=BEGIN,END,FAIL
+##SBATCH --mail-user=<username>@sandia.gov
+#SBATCH --export=ALL
+#SBATCH --job-name=h5_ctestS
+
+cd @HDF5_BINARY_DIR@
+CMD="ctest . -E MPI_TEST_ -C Release -j 32 -T test"
+
+echo "Run $CMD. Test output will be in build/ctestS.out"
+$CMD  >& ctestS.out
+echo "Done running $CMD"
+

bin/batch/ray_ctestP.lsf.in.cmake

@@ -0,0 +1,20 @@
+#!/bin/tcsh
+### LSF syntax
+#BSUB -n 6                       #number of nodes
+#BSUB -R "span[ptile=6]"
+#BSUB -W 30                      #walltime in minutes
+#BSUB -G guests                  #account
+#BSUB -e ctestPerrors.txt        #stderr
+#BSUB -o ctestPoutput.txt        #stdout
+#BSUB -J hdf5_ctestP             #job
+##BSUB -q pbatch                 #queue to use
+#BSUB -q pdebug
+
+##date; hostname
+##echo -n 'JobID is '; echo $LSB_JOBID
+
+cd @HDF5_BINARY_DIR@
+echo "Run parallel test command. Test output will be in build/ctestP.out"
+ctest . -R 'MPI_TEST_' -E t_cache_image -C Release -T test >& ctestP.out
+
+echo "Done running ctest parallel command."

bin/batch/ray_ctestS.lsf.in.cmake

@@ -0,0 +1,18 @@
+#!/bin/tcsh
+### LSF syntax
+#BSUB -n 1                       #number of nodes
+#BSUB -W 29                      #walltime in minutes
+#BSUB -G guests                  #account
+#BSUB -e ctestSerrors.txt        #stderr
+#BSUB -o ctestSoutput.txt        #stdout
+#BSUB -J hdf5_ctestS             #job
+##BSUB -q pbatch                 #queue to use
+#BSUB -q pdebug
+
+cd @HDF5_BINARY_DIR@
+echo "Run command. Test output will be in build/ctestS.out"
+ctest . -E 'MPI_TEST_' -C Release -j 32 -T test >& ctestS.out
+
+##$CMD  >& ctestS.out
+echo "Done running command."
+

bin/batch/raybsub

@@ -0,0 +1,7 @@
+#!/bin/tcsh
+
+# ray.llnl.gov requires a '<' with bsub for submitting .lsf batch jobs.
+# CMake is reluctant to pass the '<', so we put it in this script and use
+# the script to submit the bsub command on ray.
+
+bsub < $1

bin/checkposix

@@ -13,101 +13,165 @@ require 5.003;
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #
-# Robb Matzke, matzke@llnl.gov
-# 30 Aug 1997
+# Dana Robinson
+# Spring 2019
+# (Original by Robb Matzke)
 #
-# Purpose: Given the names of C source files this script will print the
-#	   file name, line number, and function name of any function that
-#	   doesn't begin with the letter `h' or `H' as stipulated by the
-#	   HDF5 programming style guide.
+# Purpose:  Given the names of C source files this script will print the
+#           file name, line number, and function name of any function that
+#           doesn't begin with the letter 'h' or 'H' as stipulated by the
+#           HDF5 programming style guide.
 #
-#	   Emacs users can run this script as the compile command and
-#	   use `next-error' (usually bound to M-`) to find each name
-#	   violation.
+#           Emacs users can run this script as the compile command and
+#           use 'next-error' (usually bound to M-`) to find each name
+#           violation.
 
-if(<>) {
-    if($ARGV =~ /\//) {
-        ($filename) = ($ARGV =~ /^.*\/([A-Za-z0-9_]*)\.c$/);
-    } else {
-        ($filename) = ($ARGV =~ /([A-Za-z0-9_]*)\.c$/);
+use File::Basename;
+
+# Loop over all files passed to the function
+foreach $arg (@ARGV) {
+
+    # Get the filename from the path
+    $filename = fileparse($arg);
+
+    # Skip files that don't include H5private.h
+    # H5system. has to be inspected by hand since it wraps POSIX files
+    #
+    # H5detect and H5make_libsettings are created before the library exists
+    # so calls that link to function replacements won't work. We'll ignore
+    # it here.
+    #
+    # If a user specifies one file, process it no matter what so people
+    # can inspect files we normally skip (like H5system.c).
+    if($#ARGV gt 0 and $filename =~ /H5FDmulti|H5FDstdio|H5VLpassthru|H5system|H5detect|H5make_libsettings/) {
+        print "$filename is exempt from using Standard library macro wrappers\n";
+        next;
     }
 
-    if($filename =~ /H5FDmulti|H5FDstdio/) {
-        print "$ARGV is exempt from using Standard library macro wrappers\n";
-    } else {
-        while (<>) {
+    # Open the file
+    open(my $fh, "<", $arg) or do {
+        warn "NOTE: Unable to open $arg: !$\n";
+        next;
+    };
 
-           # Get rid of comments by removing the inside part.
-           s|/\*.*?\*/||g;
-           if ($in_comment) {
-              if (/\*\//) {
-                 s|.*?\*/||;
-                 $in_comment = 0;
-              } else {
-                 $_="\n";
-              }
-           } elsif (m|/\*|) {
-              s|/\*.*||;
-              $in_comment = 1;
-           }
+    # Loop over all lines in the file to find undecorated functions
+    while (<$fh>) {
 
-           # Get rid of string constants if they begin and end on this line.
-           s/([\'\"])([^\1]|\\\1)*?\1/$1$1/g;
-
-           # Get rid of preprocessor directives
-           s/^\#.*//;
-
-           # Skip callbacks invoked as methods in a struct
-           next if $_ =~ /\b(\)?->|\.)\(?([a-z_A-Z]\w*)\s*\(/;
-
-           # Now find all function calls on this line which don't start with 'H'
-           while (($name)=/\b([a-z_A-GI-Z]\w*)\s*\(/) {
-              $_ = $';
-              
-              # Ignore C statements that look sort of like function
-              # calls.
-              next if $name =~ /^(if|for|offsetof|return|sizeof|switch|while|void)$/;
-
-              # Ignore things that get misdetected because of the simplified
-              # parsing that takes place here.
-              next if $name =~ /^(int|herr_t|_term_interface)$/;
-
-              # These are really HDF5 functions/macros even though they don't
-              # start with `h' or `H'.
-              next if $name =~ /^FUNC_(ENTER|LEAVE)(_(NO)?API|_PACKAGE|_STATIC)?(_NOFS|_NOCLEAR|_NOINIT)?(_NOFUNC|_TAG)?$/;
-              next if $name =~ /^(BEGIN|END)_FUNC$/;
-              next if $name =~ /^U?INT(8|16|32|64)(ENCODE|DECODE)(_VAR)?$/;
-              next if $name =~ /^CI_(PRINT_STATS|INC_SRC|INC_DST)$/;
-              next if $name =~ /^(ABS|ADDR_OVERFLOW|ALL_MEMBERS|BOUND|CONSTR|DETECT_[I|F|M]|DOWN)$/;
-              next if $name =~ /^(MIN3?|MAX3?|NELMTS|POWER_OF_TWO|REGION_OVERFLOW)$/;
-              next if $name =~ /^(UNIQUE_MEMBERS)$/;
-              next if $name =~ /^addr_defined$/;
-
-              # These functions/macros are exempt.
-              next if $name =~ /^(main|[fs]?printf|va_(start|arg|end))$/;
-
-              # These are Windows system calls. Ignore them.
-              next if $name =~ /^(_get_osfhandle|GetFileInformationByHandle|SetFilePointer|GetLastError|SetEndOfFile)$/;
-              next if $name =~ /^(FindNextFile|FindClose|_tzset|Wgettimeofday|GetSystemTimeAsFileTime|Wgetlogin|GetUserName)$/;
-
-              # These are MPI function calls. Ignore them.
-              next if $name =~ /^(MPI_|MPE_)/;
-
-              # These are POSIX threads function calls. Ignore them.
-              next if $name =~ /^pthread_/;
-
-              # These are Windows threads function calls. Ignore them.
-              next if $name =~ /^(_beginthread|(Initialize|Enter|Leave)CriticalSection|TlsAlloc)$/;
-
-              # These are zlib & szlib function calls. Ignore them.
-              next if $name =~ /^(inflate|SZ_)/;
-              next if $name =~ /^compress2$/;
-
-              print "$ARGV:$.: $name\n";
-           }
-
-        } continue {
-           close ARGV if eof;       # reset line number
+        # Get rid of comments by removing the inside part.
+        s|/\*.*?\*/||g;
+        if ($in_comment) {
+            if (/\*\//) {
+                s|.*?\*/||;
+                $in_comment = 0;
+            } else {
+                $_="\n";
+            }
+        } elsif (m|/\*|) {
+            s|/\*.*||;
+            $in_comment = 1;
         }
+
+        # Get rid of string constants if they begin and end on this line.
+        s/([\'\"])([^\1]|\\\1)*?\1/$1$1/g;
+
+        # Get rid of preprocessor directives
+        s/^\#.*//;
+
+        # Skip callbacks invoked as methods in a struct
+        next if $_ =~ /\b(\)?]?->|\.)\(?([a-z_A-Z]\w*)\s*\(/;
+
+        # Now find all function calls on this line which don't start with 'H'
+        while (($name)=/\b([a-z_A-GI-Z]\w*)\s*\(/) {
+            $_ = $';
+              
+            # Ignore C statements that look sort of like function
+            # calls.
+            next if $name =~ /^(if|for|offsetof|return|sizeof|switch|while|void)$/;
+
+            # Ignore things that get misdetected because of the simplified
+            # parsing that takes place here.
+            next if $name =~ /^(int|herr_t|_term_interface|_term_package)$/;
+
+            # These are really HDF5 functions/macros even though they don't
+            # start with `h' or `H'.
+            next if $name =~ /^FUNC_(ENTER|LEAVE)(_(NO)?API|_PACKAGE|_STATIC)?(_NOFS|_NOCLEAR|_NOINIT)?(_NOFUNC|_TAG)?$/;
+            next if $name =~ /^(BEGIN|END)_FUNC$/;
+            next if $name =~ /^U?INT(8|16|32|64)(ENCODE|DECODE)(_VAR)?$/;
+            next if $name =~ /^CI_(PRINT_STATS|INC_SRC|INC_DST)$/;
+            next if $name =~ /^(ABS|ADDR_OVERFLOW|ALL_MEMBERS|BOUND|CONSTR|DETECT_[I|F|M]|DOWN)$/;
+            next if $name =~ /^(MIN3?|MAX3?|NELMTS|POWER_OF_TWO|REGION_OVERFLOW)$/;
+            next if $name =~ /^(UNIQUE_MEMBERS|S_ISDIR)$/;
+            next if $name =~ /^addr_defined$/;
+
+            # These functions/macros are exempt.
+            # op, cb, and OP are often spuriously flagged so ignore them.
+            next if $name =~ /^(main|op|cb|OP)$/;
+
+            # This often appears in preprocessor lines that span multiple lines
+            next if $name =~ /^(defined)$/;
+
+            # These are Windows system calls. Ignore them.
+            next if $name =~ /^(_get_osfhandle|GetFileInformationByHandle|SetFilePointer|GetLastError|SetEndOfFile)$/;
+            next if $name =~ /^(FindNextFile|FindClose|_tzset|Wgettimeofday|GetSystemTimeAsFileTime|Wgetlogin|GetUserName)$/;
+            next if $name =~ /^(DeleteCriticalSection|TlsFree|TlsGetValue|CreateThread)$/;
+            next if $name =~ /^(ExpandEnvironmentStringsA|LockFileEx|UnlockFileEx)$/;
+            next if $name =~ /^(DllMain|LocalAlloc|LocalFree)$/;
+            next if $name =~ /^(FindFirstFileA|FindNextFileA)$/;
+            next if $name =~ /^(_beginthread|(Initialize|Enter|Leave)CriticalSection|TlsAlloc)$/;
+
+            # These are MPI function calls. Ignore them.
+            next if $name =~ /^(MPI_|MPE_)/;
+
+            # These are POSIX threads function calls. Ignore them.
+            next if $name =~ /^pthread_/;
+
+            # These are zlib & szlib function calls. Ignore them.
+            next if $name =~ /^(inflate|SZ_)/;
+            next if $name =~ /^compress2$/;
+
+            # These is an H5Dfill function. Ignore it in this file.
+            if($filename =~ /H5Dfill/) {
+                next if $name =~ /^(alloc_func)$/;
+            }
+
+            # These are H5Zscaleoffset functions. Ignore them in this file.
+            if($filename =~ /H5Zscaleoffset/) {
+                next if $name =~ /^(pow_fun|round_fun|abs_fun|lround_fun|llround_fun)$/;
+            }
+
+            # TESTING (not comprehensive - just noise reduction)
+            
+            # Test macros and functions (testhdf5.h)
+            next if $name =~ /^(AddTest|TestErrPrintf|TestSummary|TestCleanup|TestShutdown)$/;
+            next if $name =~ /^(CHECK|CHECK_PTR|CHECK_PTR_NULL|CHECK_PTR_EQ|CHECK_I)$/;
+            next if $name =~ /^(VERIFY|VERIFY_STR|VERIFY|TYPE|MESSAGE|ERROR)$/;
+
+            # Test macros and functions (h5test.h)
+            next if $name =~ /^(TESTING|PASSED|SKIPPED|FAIL_PUTS_ERROR|FAIL_STACK_ERROR|TEST_ERROR)$/;
+            next if $name =~ /^(GetTestExpress)$/;
+
+            # Ignore functions that start with test_ or check_
+            next if $name =~ /^test_/;
+            next if $name =~ /^check_/;
+
+            # Ignore functions that start with h5_
+            next if $name =~ /^h5_/;
+
+            # Ignore usage functions
+            next if $name =~ /^usage$/;
+
+            print "$filename:$.: $name\n";
+        }
+
     }
+
+    # Close the file
+    close($fh);
+}
+
+if($#ARGV gt 0) {
+    print "\n";
+    print "NOTE:\n";
+    print "If any files were skipped due to being exempt, you can inspect them manually\n";
+    print "by using this script on them one at a time, which will always process the file.\n";
 }

bin/make_err

@@ -244,8 +244,8 @@ sub create_init ($) {
     print HEADER   "/* Major error codes */\n";
     print HEADER   "/*********************/\n\n";
     foreach $name (keys %major) {
-        print HEADER " "x(0*$indent),"assert(${name}_g==(-1));\n";
-        print HEADER " "x(0*$indent),"if((msg = H5E_create_msg(cls, H5E_MAJOR, \"${major{$name}}\"))==NULL)\n";
+        print HEADER " "x(0*$indent),"HDassert(${name}_g==(-1));\n";
+        print HEADER " "x(0*$indent),"if((msg = H5E__create_msg(cls, H5E_MAJOR, \"${major{$name}}\"))==NULL)\n";
         print HEADER " "x(1*$indent),"HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, \"error message initialization failed\")\n";
         print HEADER " "x(0*$indent),"if((${name}_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)\n";
         print HEADER " "x(1*$indent),"HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, \"can't register error message\")\n";
@@ -260,8 +260,8 @@ sub create_init ($) {
 
         # Iterate over all the minor errors in each section
         for $name ( @{$section_list{$sect_name}}) {
-            print HEADER " "x(0*$indent),"assert(${name}_g==(-1));\n";
-            print HEADER " "x(0*$indent),"if((msg = H5E_create_msg(cls, H5E_MINOR, \"${minor{$name}}\"))==NULL)\n";
+            print HEADER " "x(0*$indent),"HDassert(${name}_g==(-1));\n";
+            print HEADER " "x(0*$indent),"if((msg = H5E__create_msg(cls, H5E_MINOR, \"${minor{$name}}\"))==NULL)\n";
             print HEADER " "x(1*$indent),"HGOTO_ERROR(H5E_ERROR, H5E_CANTINIT, FAIL, \"error message initialization failed\")\n";
             print HEADER " "x(0*$indent),"if((${name}_g = H5I_register(H5I_ERROR_MSG, msg, FALSE))<0)\n";
             print HEADER " "x(1*$indent),"HGOTO_ERROR(H5E_ERROR, H5E_CANTREGISTER, FAIL, \"can't register error message\")\n";

bin/make_vers

@@ -7,8 +7,8 @@ require 5.003;
 #       is added (like support for 1.4, etc), the min_sup_idx parameter will
 #       need to be decremented. - QAK)
 
-# Max. library "index" (0 = v1.0, 1 = 1.2, etc)
-$max_idx = 5;
+# Max. library "index" (0 = v1.0, 1 = 1.2, 2 = 1.4, 3 = 1.6, 4 = 1.8, 5 = 1.10, 6 = 1.12, etc)
+$max_idx = 6;
 
 # Min. supported previous library version "index" (0 = v1.0, 1 = 1.2, etc)
 $min_sup_idx = 3;
@@ -478,7 +478,7 @@ for $file (@ARGV) {
         }
     }
     close SOURCE;
-  
+
     # Create header files
     print "Generating '", $prefix, "H5version.h'\n";
     create_public($prefix);

bin/makehelp

@@ -40,6 +40,7 @@ make distclean:         remove all files generated by make, make check, or
 make check-p:           Only run parallel tests
 make check-s:           Only run serial tests
 make check-vfd:         Run tests with each virtual file driver
+make check-vol:         Run tests with each virtual object layer connector
 
 HDF5 uses Automake, so any standard Automake targets not listed here
 should also work.

bin/release

@@ -55,13 +55,21 @@ for compressing the resulting tar archive (if none are given then
 
     tar		-- use tar and don't do any compressing.
     gzip	-- use gzip with "-9" and append ".gz" to the output name.
+    bzip2       -- use bzip2 with "-9" and append ".bz2" to the output name.
+    zip		-- convert all text files to DOS style and form a zip file for Windows use.
     cmake-tgz   -- create a tar file using the gzip default level with a build-unix.sh 
                    command file and all other CMake files needed to build HDF5 source
                    using CMake on unix machines.
-    bzip2       -- use bzip2 with "-9" and append ".bz2" to the output name.
-    zip		-- convert all text files to DOS style and form a zip file for Windows use.
     cmake-zip   -- convert all text files to DOS style and create a zip file inluding cmake
                    scripts and .bat files to build HDF5 source using CMake on Windows. 
+    hpc-cmake-tgz  
+                -- create a tar file using the gzip default level with a build-unix.sh 
+                   command file and all other CMake files needed to build HDF5 source
+                   using CMake on unix machines, with HDF5options.cmake files for serial
+                   and parallel builds on machines requiring batch jobs to run tests.
+                   The default is for parallel build, with serial only build by changing
+                   the HDF5options.cmake symlink to ser-HDF5options.cmake.  More 
+                   information is available in the README_HPC file.
     doc         -- produce the latest doc tree in addition to the archive.
 
 An md5 checksum is produced for each archive created and stored in the md5 file.
@@ -225,7 +233,7 @@ tar2cmakezip()
     # step 3: add SZIP.tar.gz, ZLib.tar.gz and cmake files
     cp /mnt/scr1/pre-release/hdf5/CMake/SZip.tar.gz $cmziptmpsubdir
     cp /mnt/scr1/pre-release/hdf5/CMake/ZLib.tar.gz $cmziptmpsubdir
-    cp /mnt/scr1/pre-release/hdf5/CMake/HDF5Examples-1.10.8-Source.tar.gz $cmziptmpsubdir
+    cp /mnt/scr1/pre-release/hdf5/CMake/HDF5Examples-1.12.4-Source.zip $cmziptmpsubdir
     cp $cmziptmpsubdir/$version/config/cmake/scripts/CTestScript.cmake $cmziptmpsubdir
     cp $cmziptmpsubdir/$version/config/cmake/scripts/HDF5config.cmake $cmziptmpsubdir
     cp $cmziptmpsubdir/$version/config/cmake/scripts/HDF5options.cmake $cmziptmpsubdir
@@ -256,7 +264,7 @@ tar2cmakezip()
 }
 
 # Function name: tar2cmaketgz
-# Convert the release tarball to a Windows zipball with files to run CMake build.
+# Convert the release tarball to a gzipped tar file with files to run CMake build.
 #
 # Programmer: Larry Knox
 # Creation date: 2017-02-20
@@ -320,7 +328,7 @@ tar2cmaketgz()
     # step 3: add SZIP.tar.gz, ZLib.tar.gz and cmake files
     cp /mnt/scr1/pre-release/hdf5/CMake/SZip.tar.gz $cmgztmpsubdir
     cp /mnt/scr1/pre-release/hdf5/CMake/ZLib.tar.gz $cmgztmpsubdir
-    cp /mnt/scr1/pre-release/hdf5/CMake/HDF5Examples-1.10.8-Source.tar.gz $cmgztmpsubdir
+    cp /mnt/scr1/pre-release/hdf5/CMake/HDF5Examples-1.12.4-Source.tar.gz $cmgztmpsubdir
     cp $cmgztmpsubdir/$version/config/cmake/scripts/CTestScript.cmake $cmgztmpsubdir
     cp $cmgztmpsubdir/$version/config/cmake/scripts/HDF5config.cmake $cmgztmpsubdir
     cp $cmgztmpsubdir/$version/config/cmake/scripts/HDF5options.cmake $cmgztmpsubdir
@@ -330,6 +338,93 @@ tar2cmaketgz()
     rm -rf $cmgztmpdir
 }
 
+# Function name: tar2hpccmaketgz
+# Convert the release tarball to a gzipped tarfile with files to run CMake build
+# and HDF5options.cmake files for parallel or serial only builds where build
+# tests are run on compute nodes using batch scripts.
+#
+# Programmer: Larry Knox
+# Creation date: 2019-01-28
+#
+# Modifications
+#
+# Steps:
+# 1. untar the tarball in a temporary directory;
+#    Note: do this in a temporary directory to avoid changing
+#    the original source directory which may be around.
+# 2. add build-unix.sh script.
+# 3. add SZIP.tar.gz, ZLib.tar.gz and cmake files to top level directory.
+# 4. create gzipped tar file with these contents:
+#        build-unix.sh          script
+#        hdf5-<version>         source code directory extracted from tar file
+#        CTestScript.cmake      cmake file copied from <hdf5 source code>/config/cmake/scripts
+#        HDF5config.cmake       cmake file copied from <hdf5 source code>/config/cmake/scripts
+#        HDF5options.cmake      cmake file copied from <hdf5 source code>/config/cmake/scripts
+#        SZip.tar.gz            copied from /mnt/scr1/pre-release/hdf5/CMake
+#        ZLib.tar.gz            copied from /mnt/scr1/pre-release/hdf5/CMake
+#
+# 5. For HPC-CMake tgz file the following are also needed in the top-level directory:
+#        README_HPC                 copied from release_docs
+#        ser-HDF5options.cmake      copied from <hdf5 source code>/config/cmake/scripts/HPC
+#        par-HDF5options.cmake      copied from <hdf5 source code>/config/cmake/scripts/HPC
+#        HDF5options.cmake          symlink to par-HDF5options.cmake
+#
+
+# Parameters:
+# $1 version
+# $2 release tarball
+# $3 output zipball file name
+#
+# Returns 0 if successful; 1 otherwise
+#
+ # need function to create another temporary directory, extract the
+            # $tmpdir/$HDF5_VERS.tar into it, create build-unix.sh,
+            # add CTestScript.cmake, HDF5config.cmake, SZIP.tar.gz
+            # ZLib.tar.gz, HDF5 examples, and then tar.gz it.
+tar2hpccmaketgz()
+{
+    if [ $# -ne 3 ]; then
+	echo "usage: tar2hpccmaketgz <tarfilename> <tgzfilename>"
+	return 1
+    fi
+    cmgztmpdir=/tmp/cmgztmpdir$$
+    cmgztmpsubdir=$cmgztmpdir/HPC-CMake-$HDF5_VERS
+    mkdir -p $cmgztmpsubdir
+    version=$1
+    tarfile=$2
+    tgzfile=$3
+
+    # step 1: untar tarball in cmgztmpdir
+    (cd $cmgztmpsubdir; tar xf -) < $tarfile
+    # sanity check
+    if [ ! -d $cmgztmpsubdir/$version ]; then
+	echo "untar did not create $cmgztmpsubdir/$version source dir"
+	# cleanup
+	rm -rf $cmgztmpdir
+	return 1
+    fi
+
+
+    # step 2: add build-unix.sh script
+    (cd $cmgztmpsubdir; echo "ctest -S HDF5config.cmake,BUILD_GENERATOR=Unix -C Release -V -O hdf5.log" > build-unix.sh; chmod 755 build-unix.sh)
+
+    # step 3: add SZIP.tar.gz, ZLib.tar.gz and cmake files
+    cp /mnt/scr1/pre-release/hdf5/CMake/SZip.tar.gz $cmgztmpsubdir
+    cp /mnt/scr1/pre-release/hdf5/CMake/ZLib.tar.gz $cmgztmpsubdir
+    cp /mnt/scr1/pre-release/hdf5/CMake/HDF5Examples-1.12.4-Source.tar.gz $cmgztmpsubdir
+    cp $cmgztmpsubdir/$version/config/cmake/scripts/CTestScript.cmake $cmgztmpsubdir
+    cp $cmgztmpsubdir/$version/config/cmake/scripts/HDF5config.cmake $cmgztmpsubdir
+
+    cp $cmgztmpsubdir/$version/release_docs/README_HPC $cmgztmpsubdir
+    cp $cmgztmpsubdir/$version/config/cmake/scripts/HPC/ser-HDF5options.cmake $cmgztmpsubdir
+    cp $cmgztmpsubdir/$version/config/cmake/scripts/HPC/par-HDF5options.cmake $cmgztmpsubdir
+    (cd $cmgztmpsubdir; ln -s par-HDF5options.cmake HDF5options.cmake)
+    tar czf $DEST/HPC-CMake-$HDF5_VERS.tar.gz -C $cmgztmpdir . || exit 1 
+                 
+    # cleanup
+    rm -rf $cmgztmpdir
+}
+
 # This command must be run at the top level of the hdf5 source directory.
 # Verify this requirement.
 if [ ! \( -f configure.ac -a -f bin/release \) ]; then
@@ -514,6 +609,11 @@ for comp in $methods; do
 	    tar2cmaketgz $HDF5_VERS $tmpdir/$HDF5_VERS.tar $DEST/CMake-$HDF5_VERS.tar.gz 1>&2
 	    (cd $DEST; md5sum CMake-$HDF5_VERS.tar.gz >> $MD5file) 
             ;;
+        hpc-cmake-tgz)
+	    test "$verbose" && echo "   Creating HPC-CMake tar.gz file..." 1>&2
+	    tar2hpccmaketgz $HDF5_VERS $tmpdir/$HDF5_VERS.tar $DEST/HPC-CMake-$HDF5_VERS.tar.gz 1>&2
+	    (cd $DEST; md5sum HPC-CMake-$HDF5_VERS.tar.gz >> $MD5file) 
+            ;;
 	bzip2)
 	    test "$verbose" && echo "   Running bzip2..." 1>&2
 	    bzip2 -9 <$tmpdir/$HDF5_VERS.tar >$DEST/$HDF5_VERS.tar.bz2

bin/snapshot

@@ -132,6 +132,7 @@ DISPLAYUSAGE()
 Usage: $PROGNAME [all] [checkout] [ftp <URL> [diff] [test] [srcdir] [release] [help]
 	[clean] [distclean] [echo] [deploy <dir>] [deploydir <dir>]
 	[zlib <zlib_path>] [releasedir <dir>] [srcdirname <dir>] [check-vfd]
+        [check-vol]
 	[exec <command>] [module-load <module-list>] [op-configure <option>] 
         [--<option>]
     all:      Run all commands (checkout, test & release)
@@ -169,6 +170,8 @@ Usage: $PROGNAME [all] [checkout] [ftp <URL> [diff] [test] [srcdir] [release] [h
               [Default is $ReleaseDir_default]
     check-vfd:
 	      Run make check-vfd instead of just make check.
+    check-vol:
+	      Run make check-vol instead of just make check.
     exttest <testscript>;
               Run testscript;
     exec <command>:
@@ -422,6 +425,9 @@ while [ $# -gt 0 ] ; do
 	check-vfd)
 	    CHECKVAL=check-vfd
 	    ;;
+	check-vol)
+	    CHECKVAL=check-vol
+	    ;;
         module-load)
             shift
             if [ $# -lt 1 ]; then

bin/trace

@@ -46,6 +46,7 @@ $Source = "";
                "H5E_direction_t"            => "Ed",
                "H5E_error_t"                => "Ee",
                "H5E_type_t"                 => "Et",
+               "H5ES_status_t"              => "Es",
                "H5F_close_degree_t"         => "Fd",
                "H5F_fspace_strategy_t"      => "Ff",
                "H5F_file_space_type_t"      => "Ff",
@@ -67,6 +68,7 @@ $Source = "";
                "unsigned"                   => "Iu",
                "unsigned int"               => "Iu",
                "uint32_t"                   => "Iu",
+               "uint64_t"                   => "UL",
                "H5I_type_t"                 => "It",
                "H5G_link_t"                 => "Ll", #Same as H5L_type_t now
                "H5L_type_t"                 => "Ll",
@@ -95,6 +97,23 @@ $Source = "";
                "H5T_str_t"                  => "Tz",
                "unsigned long"              => "Ul",
                "unsigned long long"         => "UL",
+               "H5VL_attr_get_t"            => "Va",
+               "H5VL_attr_specific_t"       => "Vb",
+               "H5VL_class_value_t"         => "VC",
+               "H5VL_dataset_get_t"         => "Vc",
+               "H5VL_dataset_specific_t"    => "Vd",
+               "H5VL_datatype_get_t"        => "Ve",
+               "H5VL_datatype_specific_t"   => "Vf",
+               "H5VL_file_get_t"            => "Vg",
+               "H5VL_file_specific_t"       => "Vh",
+               "H5VL_group_get_t"           => "Vi",
+               "H5VL_group_specific_t"      => "Vj",
+               "H5VL_link_create_type_t"    => "Vk",
+               "H5VL_link_get_t"            => "Vl",
+               "H5VL_link_specific_t"       => "Vm",
+               "H5VL_object_get_t"          => "Vn",
+               "H5VL_object_specific_t"     => "Vo",
+               "H5VL_request_specific_t"    => "Vr",
                "void"                       => "x",
                "FILE"                       => "x",
                "H5A_operator_t"             => "x",
@@ -124,6 +143,7 @@ $Source = "";
                "H5G_iterate_t"              => "x",
                "H5G_info_t"                 => "x",
                "H5I_free_t"                 => "x",
+               "H5I_iterate_func_t"         => "x",
                "H5I_search_func_t"          => "x",
                "H5L_class_t"                => "x",
                "H5L_elink_traverse_t"       => "x",
@@ -147,6 +167,10 @@ $Source = "";
                "H5T_cdata_t"                => "x",
                "H5T_conv_t"                 => "x",
                "H5T_conv_except_func_t"     => "x",
+               "H5VL_t"                     => "x",
+               "H5VL_class_t"               => "x",
+               "H5VL_loc_params_t"          => "x",
+               "H5VL_request_notify_t"      => "x",
                "H5Z_func_t"                 => "x",
                "H5Z_filter_func_t"          => "x",
                "va_list"                    => "x",
@@ -295,7 +319,7 @@ sub rewrite_func ($$$$$) {
     # Ignored due to NO TRACE comment.
   } elsif ($body =~ s/((\n[ \t]*)H5TRACE\d+\s*\(.*?\);)\n/"$2$trace"/es) {
     # Replaced an H5TRACE macro.
-  } elsif ($body=~s/((\n[ \t]*)FUNC_ENTER\w*\s*(\(.*?\))?;??)\n/"$1$2$trace"/es) {
+  } elsif ($body=~s/((\n[ \t]*)FUNC_ENTER\w*[ \t]*(\(.*?\))?;??)\n/"$1$2$trace"/es) {
     # Added an H5TRACE macro after a FUNC_ENTER macro.
   } else {
     errmesg $file, $name, "unable to insert tracing information";

c++/examples/CMakeTests.cmake

@@ -26,7 +26,7 @@
           SDSextendible.h5
           Select.h5
   )
-  if (NOT "${last_test}" STREQUAL "")
+  if (last_test)
     set_tests_properties (CPP_ex-clear-objects PROPERTIES DEPENDS ${last_test})
   endif ()
   set (last_test "CPP_ex-clear-objects")
@@ -46,7 +46,7 @@
           -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake"
       )
     endif ()
-    if (NOT "${last_test}" STREQUAL "")
+    if (last_test)
       set_tests_properties (CPP_ex_${example} PROPERTIES DEPENDS ${last_test})
     endif ()
     set (last_test "CPP_ex_${example}")
@@ -66,7 +66,7 @@
           h5tutr_groups.h5
           h5tutr_subset.h5
   )
-  if (NOT "${last_test}" STREQUAL "")
+  if (last_test)
     set_tests_properties (CPP_ex_tutr-clear-objects PROPERTIES DEPENDS ${last_test})
   endif ()
   set (last_test "CPP_ex_tutr-clear-objects")
@@ -86,7 +86,7 @@
           -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake"
       )
     endif ()
-    if (NOT "${last_test}" STREQUAL "")
+    if (last_test)
       set_tests_properties (CPP_ex_${example} PROPERTIES DEPENDS ${last_test})
     endif ()
     set (last_test "CPP_ex_${example}")

c++/examples/run-c++-ex.sh.in

@@ -32,7 +32,7 @@ EXIT_FAILURE=1
 
 # Where the tool is installed.
 # default is relative path to installed location of the tools
-prefix="${prefix:-@prefix@}"
+prefix="${prefix:-../../..}"
 AR="@AR@"
 RANLIB="@RANLIB@"
 H5TOOL="h5c++"                  # The tool name

c++/src/H5ArrayType.cpp

@@ -143,6 +143,7 @@ ArrayType& ArrayType::operator=(const ArrayType& rhs)
 // Function:    ArrayType::decode
 ///\brief       Returns an ArrayType object via DataType* by decoding the
 ///             binary object description of this type.
+///
 ///\exception   H5::DataTypeIException
 // Programmer   Binh-Minh Ribler - Aug 2017
 //--------------------------------------------------------------------------

c++/src/H5CompType.cpp

@@ -129,6 +129,7 @@ CompType::CompType(const H5Location& loc, const H5std_string& dtype_name) : Data
 // Function:    CompType::decode
 ///\brief       Returns a CompType object via DataType* by decoding the
 ///             binary object description of this datatype.
+///
 ///\exception   H5::DataTypeIException
 // Programmer   Binh-Minh Ribler - Aug 2017
 //--------------------------------------------------------------------------

c++/src/H5CppDoc.h

@@ -53,8 +53,7 @@
  * <br />
  * \section install_sec Installation
  *
- * The HDF5 C++ API is included with the HDF5 source code and can 
- * be obtained from 
+ * The HDF5 C++ API is included with the HDF5 source code.
  * 
  * Please refer to the release_docs/INSTALL file under the top directory 
  * of the HDF5 source code for information about installing, building, 

c++/src/H5DataType.cpp

@@ -281,6 +281,7 @@ hid_t DataType::p_decode() const
 // Function:    DataType::decode
 ///\brief       Returns a DataType instance by decoding the binary object
 ///             description of this datatype.
+///
 ///\exception   H5::DataTypeIException
 // Programmer   Binh-Minh Ribler - Aug 2017
 //--------------------------------------------------------------------------
@@ -301,6 +302,7 @@ DataType* DataType::decode() const
 //--------------------------------------------------------------------------
 // Function:    DataType::encode
 ///\brief       Creates a binary object description of this datatype.
+///
 ///\exception   H5::DataTypeIException
 // Programmer   Binh-Minh Ribler - Aug 2017
 //--------------------------------------------------------------------------
@@ -333,6 +335,7 @@ void DataType::encode()
 // Function:    DataType::hasBinaryDesc
 ///\brief       Determines whether this datatype has a binary object
 ///             description.
+///
 ///\exception   H5::DataTypeIException
 // Programmer   Binh-Minh Ribler - Aug 2017
 //--------------------------------------------------------------------------

c++/src/H5DcreatProp.cpp

@@ -253,6 +253,7 @@ void DSetCreatPropList::setSzip(unsigned int options_mask, unsigned int pixels_p
 // Function:    DSetCreatPropList::setNbit
 ///\brief       Sets up for the use of the Nbit compression filter.
 ///\exception   H5::PropListIException
+///
 ///\par Description
 ///             The associate C function sets an Nbit compression filter,
 ///             H5Z_FILTER_NBIT, for a dataset.  For more information about

c++/src/H5DxferProp.cpp

@@ -299,6 +299,7 @@ ssize_t DSetMemXferPropList::getDataTransform(char* exp, size_t buf_size) const
 // Function:    DSetMemXferPropList::getDataTransform
 ///\brief       This is an overloaded member function, provided for convenience.
 ///             It takes no parameter and returns a \c H5std_string for the expression.
+///
 ///\exception   H5::PropListIException
 // Programmer   Binh-Minh Ribler - Mar, 2014
 //--------------------------------------------------------------------------

c++/src/H5EnumType.cpp

@@ -151,6 +151,7 @@ EnumType::EnumType(const H5Location& loc, const H5std_string& dtype_name) : Data
 // Function:    EnumType::decode
 ///\brief       Returns an EnumType object via DataType* by decoding the
 ///             binary object description of this type.
+///
 ///\exception   H5::DataTypeIException
 // Programmer   Binh-Minh Ribler - Aug 2017
 //--------------------------------------------------------------------------

c++/src/H5File.cpp

@@ -192,16 +192,17 @@ H5File::H5File(const H5File& original) : Group()
 //--------------------------------------------------------------------------
 bool H5File::isHdf5(const char* name)
 {
-    // Calls C routine H5Fis_hdf5 to determine whether the file is in
+    // Calls C routine H5Fis_accessible to determine whether the file is in
     // HDF5 format.  It returns positive value, 0, or negative value
-    htri_t ret_value = H5Fis_hdf5(name);
+    htri_t ret_value = H5Fis_accessible(name, H5P_DEFAULT);
+
     if (ret_value > 0)
         return true;
     else if (ret_value == 0)
         return false;
-    else // Raise exception when H5Fis_hdf5 returns a negative value
+    else // Raise exception when H5Fis_accessible returns a negative value
     {
-        throw FileIException("H5File::isHdf5", "H5Fis_hdf5 returned negative value");
+        throw FileIException("H5File::isHdf5", "H5Fis_accessible returned negative value");
     }
 }
 
@@ -217,6 +218,46 @@ bool H5File::isHdf5(const H5std_string& name)
    return(isHdf5( name.c_str()));
 }
 
+//--------------------------------------------------------------------------
+// Function:    H5File::isAccessible (static)
+///\brief       Determines whether a file can be accessed as HDF5. (Static)
+///\param       name - IN: Name of the file
+///\param       access_plist - IN: File access property list.  Default to
+///             FileAccPropList::DEFAULT
+///\return      true if the file can be accessed as HDF5, and false, otherwise
+///\exception   H5::FileIException
+// September 2018
+//--------------------------------------------------------------------------
+bool H5File::isAccessible(const char* name, const FileAccPropList& access_plist)
+{
+    // Calls C routine H5Fis_accessible to determine whether the file is in
+    // HDF5 format.  It returns positive value, 0, or negative value
+    hid_t access_plist_id = access_plist.getId();
+    htri_t ret_value = H5Fis_accessible(name, access_plist_id);
+    if (ret_value > 0)
+        return true;
+    else if (ret_value == 0)
+        return false;
+    else // Raise exception when H5Fis_accessible returns a negative value
+    {
+        throw FileIException("H5File::isAccessible", "H5Fis_accessible returned negative value");
+    }
+}
+
+//--------------------------------------------------------------------------
+// Function:    H5File::isAccessible (static)
+///\brief       This is an overloaded member function, provided for convenience.
+///             It takes an \c H5std_string for \a name. (Static)
+///\param       name - IN: Name of the file - \c H5std_string
+///\param       access_plist - IN: File access property list.  Default to
+///             FileAccPropList::DEFAULT
+// September 2018
+//--------------------------------------------------------------------------
+bool H5File::isAccessible(const H5std_string& name, const FileAccPropList& access_plist)
+{
+    return(isAccessible(name.c_str(), access_plist));
+}
+
 //--------------------------------------------------------------------------
 // Function:    openFile
 ///\brief       Opens an HDF5 file

c++/src/H5File.h

@@ -73,6 +73,10 @@ class H5_DLLCPP H5File : public Group {
         static bool isHdf5(const char* name);
         static bool isHdf5(const H5std_string& name);
 
+        // Determines if a file, specified by its name, can be accessed as HDF5
+        static bool isAccessible(const char* name, const FileAccPropList& access_plist = FileAccPropList::DEFAULT);
+        static bool isAccessible(const H5std_string& name, const FileAccPropList& access_plist = FileAccPropList::DEFAULT);
+
         // Reopens this file.
         void reOpen();  // added for better name
 

c++/src/H5FloatType.cpp

@@ -133,6 +133,7 @@ FloatType::FloatType(const H5Location& loc, const H5std_string& dtype_name) : At
 // Function:    FloatType::decode
 ///\brief       Returns an FloatType object via DataType* by decoding the
 ///             binary object description of this type.
+///
 ///\exception   H5::DataTypeIException
 // Programmer   Binh-Minh Ribler - Aug 2017
 //--------------------------------------------------------------------------

c++/src/H5Group.cpp

@@ -66,6 +66,7 @@ Group::Group(const Group& original) : H5Object(), CommonFG(), id(original.id)
 //--------------------------------------------------------------------------
 // Function:    Group::closeObjId
 ///\brief       Closes an object, which was opened with Group::getObjId
+///
 ///\exception   H5::FileIException or H5::GroupIException
 // Programmer   Binh-Minh Ribler - March, 2017
 //--------------------------------------------------------------------------

c++/src/H5IdComponent.cpp

@@ -174,8 +174,8 @@ H5I_type_t IdComponent::getHDFObjType() const
 ///             \li \c H5I_DATASPACE
 ///             \li \c H5I_DATASET
 ///             \li \c H5I_ATTR
-///             \li \c H5I_REFERENCE (DEPRECATED)
 ///             \li \c H5I_VFL
+///             \li \c H5I_VOL
 ///             \li \c H5I_GENPROP_CLS
 ///             \li \c H5I_GENPROP_LST
 ///             \li \c H5I_ERROR_CLASS
@@ -227,8 +227,8 @@ bool IdComponent::isValid(hid_t an_id)
 ///             \li \c H5I_DATASPACE
 ///             \li \c H5I_DATASET
 ///             \li \c H5I_ATTR
-///             \li \c H5I_REFERENCE (DEPRECATED)
 ///             \li \c H5I_VFL
+///             \li \c H5I_VOL
 ///             \li \c H5I_GENPROP_CLS
 ///             \li \c H5I_GENPROP_LST
 ///             \li \c H5I_ERROR_CLASS

c++/src/H5IntType.cpp

@@ -132,6 +132,7 @@ IntType::IntType(const H5Location& loc, const H5std_string& dtype_name) : AtomTy
 // Function:    IntType::decode
 ///\brief       Returns an IntType object via DataType* by decoding the
 ///             binary object description of this type.
+///
 ///\exception   H5::DataTypeIException
 // Programmer   Binh-Minh Ribler - Aug 2017
 //--------------------------------------------------------------------------

c++/src/H5LaccProp.cpp

@@ -107,6 +107,7 @@ LinkAccPropList::LinkAccPropList(const hid_t plist_id) : PropList(plist_id) {}
 ///\brief       Set the number of soft or user-defined link traversals allowed
 ///             before the library assumes it has found a cycle and aborts the
 ///             traversal.
+///
 ///\exception   H5::PropListIException
 // Programmer   Binh-Minh Ribler - March 1, 2017
 //--------------------------------------------------------------------------
@@ -124,6 +125,7 @@ void LinkAccPropList::setNumLinks(size_t nlinks) const
 // Function:    LinkAccPropList::getNumLinks
 ///\brief       Gets the number of soft or user-defined links that can be
 ///             traversed before a failure occurs.
+///
 ///\exception   H5::PropListIException
 // Programmer   Binh-Minh Ribler - March 1, 2017
 //--------------------------------------------------------------------------

c++/src/H5LaccProp.h

@@ -12,9 +12,6 @@
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
 
-// Class LinkAccPropList represents the HDF5 file access property list and
-// inherits from DataType.
-
 #ifndef __H5LinkAccPropList_H
 #define __H5LinkAccPropList_H
 
@@ -22,15 +19,15 @@ namespace H5 {
 
 /*! \class LinkAccPropList
     \brief Class LinkAccPropList inherits from PropList and provides
-    wrappers for the HDF5 file access property list.
+    wrappers for the HDF5 link access property list.
 */
 // Inheritance: PropList -> IdComponent
 class H5_DLLCPP LinkAccPropList : public PropList {
    public:
-        ///\brief Default file access property list.
+        ///\brief Default link access property list.
         static const LinkAccPropList& DEFAULT;
 
-        // Creates a file access property list.
+        // Creates a link access property list.
         LinkAccPropList();
 
         ///\brief Returns this class name.
@@ -39,7 +36,7 @@ class H5_DLLCPP LinkAccPropList : public PropList {
         // Copy constructor: same as the original LinkAccPropList.
         LinkAccPropList(const LinkAccPropList& original);
 
-        // Creates a copy of an existing file access property list
+        // Creates a copy of an existing link access property list
         // using the property list id.
         LinkAccPropList (const hid_t plist_id);
 

c++/src/H5LcreatProp.cpp

@@ -105,6 +105,7 @@ LinkCreatPropList::LinkCreatPropList(const hid_t plist_id) : PropList(plist_id)
 //--------------------------------------------------------------------------
 // Function:    LinkCreatPropList::setCharEncoding
 ///\brief       Sets the character encoding of the string.
+///
 ///\exception   H5::PropListIException
 // March, 2018
 //--------------------------------------------------------------------------
@@ -121,6 +122,7 @@ void LinkCreatPropList::setCharEncoding(H5T_cset_t encoding) const
 //--------------------------------------------------------------------------
 // Function:    LinkCreatPropList::getCharEncoding
 ///\brief       Gets the character encoding of the string.
+///\return      The character encoding
 ///\exception   H5::PropListIException
 // March, 2018
 //--------------------------------------------------------------------------

c++/src/H5LcreatProp.h

@@ -12,9 +12,6 @@
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
 
-// Class LinkCreatPropList represents the HDF5 file access property list and
-// inherits from DataType.
-
 #ifndef __H5LinkCreatPropList_H
 #define __H5LinkCreatPropList_H
 
@@ -22,15 +19,15 @@ namespace H5 {
 
 /*! \class LinkCreatPropList
     \brief Class LinkCreatPropList inherits from PropList and provides
-    wrappers for the HDF5 file access property list.
+    wrappers for the HDF5 link creation property list.
 */
 // Inheritance: PropList -> IdComponent
 class H5_DLLCPP LinkCreatPropList : public PropList {
    public:
-        ///\brief Default file access property list.
+        ///\brief Default link creation property list.
         static const LinkCreatPropList& DEFAULT;
 
-        // Creates a file access property list.
+        // Creates a link creation property list.
         LinkCreatPropList();
 
         ///\brief Returns this class name.
@@ -39,7 +36,7 @@ class H5_DLLCPP LinkCreatPropList : public PropList {
         // Copy constructor: same as the original LinkCreatPropList.
         LinkCreatPropList(const LinkCreatPropList& original);
 
-        // Creates a copy of an existing file access property list
+        // Creates a copy of an existing link creation property list
         // using the property list id.
         LinkCreatPropList (const hid_t plist_id);
 

c++/src/H5Object.cpp

@@ -40,9 +40,8 @@
 namespace H5 {
 
 #ifndef DOXYGEN_SHOULD_SKIP_THIS
-// userAttrOpWrpr simply interfaces between the user's function and the
-// C library function H5Aiterate2; used to resolve the different prototype
-// problem.  May be moved to Iterator later.
+// userAttrOpWrpr interfaces between the user's function and the
+// C library function H5Aiterate2
 extern "C" herr_t userAttrOpWrpr(hid_t loc_id, const char *attr_name,
     const H5A_info_t *ainfo, void *op_data)
 {
@@ -52,6 +51,17 @@ extern "C" herr_t userAttrOpWrpr(hid_t loc_id, const char *attr_name,
     return 0;
 }
 
+// userVisitOpWrpr interfaces between the user's function and the
+// C library function H5Ovisit2
+extern "C" herr_t userVisitOpWrpr(hid_t obj_id, const char *attr_name,
+    const H5O_info_t *obj_info, void *op_data)
+{
+    H5std_string s_attr_name = H5std_string(attr_name);
+    UserData4Visit* myData = reinterpret_cast<UserData4Visit *> (op_data);
+    int status = myData->op(*myData->obj, s_attr_name, obj_info, myData->opData);
+    return status;
+}
+
 //--------------------------------------------------------------------------
 // Function:    H5Object default constructor (protected)
 // Programmer   Binh-Minh Ribler - 2000
@@ -197,8 +207,6 @@ Attribute H5Object::openAttribute(const unsigned int idx) const
 ///\par Description
 ///             The signature of user_op is
 ///             void (*)(H5::H5Location&, H5std_string, void*).
-///             For information, please refer to the H5Aiterate2 API in
-///             the HDF5 C Reference Manual.
 // Programmer   Binh-Minh Ribler - 2000
 //--------------------------------------------------------------------------
 int H5Object::iterateAttrs(attr_operator_t user_op, unsigned *_idx, void *op_data)
@@ -227,6 +235,61 @@ int H5Object::iterateAttrs(attr_operator_t user_op, unsigned *_idx, void *op_dat
         throw AttributeIException(inMemFunc("iterateAttrs"), "H5Aiterate2 failed");
 }
 
+//--------------------------------------------------------------------------
+// Function:    H5Object::visit
+///\brief       Recursively visits all HDF5 objects accessible from this object.
+///\param       idx_type - IN: Type of index; valid values include:
+///             \li \c H5_INDEX_NAME
+///             \li \c H5_INDEX_CRT_ORDER
+///\param       order - IN: Order in which index is traversed; valid values include:
+///             \li \c H5_ITER_DEC
+///             \li \c H5_ITER_INC
+///             \li \c H5_ITER_NATIVE
+///\param       user_op  - IN: Callback function passing data regarding the
+///                            object to the calling application
+///\param       *op_data - IN: User-defined pointer to data required by the
+///                            application for its processing of the object
+///\param       fields   - IN: Flags specifying the fields to be retrieved
+///                            to the callback op via the H5O_info_t argument.
+///             \li \c H5O_INFO_BASIC      fileno, addr, type, and rc fields
+///             \li \c H5O_INFO_TIME       atime, mtime, ctime, and btime fields
+///             \li \c H5O_INFO_NUM_ATTRS  num_attrs field
+///             \li \c H5O_INFO_HDR        hdr field
+///             \li \c H5O_INFO_META_SIZE  meta_size field
+///             \li \c H5O_INFO_ALL        H5O_INFO_BASIC | H5O_INFO_TIME | H5O_INFO_NUM_ATTRS | H5O_INFO_HDR | H5O_INFO_META_SIZE
+///\return
+///             \li On success:
+///                 \li the return value of the first operator that returns a positive value
+///                 \li zero if all members were processed with no operator returning non-zero
+///             \li On failure:
+///                 \li an exception Exception will be thrown if something went
+///                     wrong within the library or the operator failed
+///\exception   H5::Exception
+///\par Description
+///             For information, please refer to the H5Ovisit2 API in the HDF5
+///             C Reference Manual.
+// Programmer   Binh-Minh Ribler - Feb, 2019
+//--------------------------------------------------------------------------
+void H5Object::visit(H5_index_t idx_type, H5_iter_order_t order, visit_operator_t user_op, void *op_data, unsigned int fields)
+{
+    // Store the user's function and data
+    UserData4Visit* userData = new UserData4Visit;
+    userData->opData = op_data;
+    userData->op = user_op;
+    userData->obj = this;
+
+    // Call the C API passing in op wrapper and info
+    herr_t ret_value = H5Ovisit2(getId(), idx_type, order, userVisitOpWrpr, static_cast<void *>(userData), fields);
+
+    // Release memory
+    delete userData;
+
+    // Throw exception if H5Ovisit2 failed, which could be a failure in
+    // the library or in the call back operator
+    if (ret_value < 0)
+        throw Exception(inMemFunc("visit"), "H5Ovisit2 failed");
+}
+
 //--------------------------------------------------------------------------
 // Function:    H5Object::objVersion
 ///\brief       Returns the header version of this HDF5 object.

c++/src/H5Object.h

@@ -40,16 +40,30 @@ namespace H5 {
 // Inheritance: H5Location -> IdComponent
 
 // Define the operator function pointer for H5Aiterate().
-typedef void (*attr_operator_t)(H5Object& loc/*in*/,
-                                 const H5std_string attr_name/*in*/,
-                                 void *operator_data/*in,out*/);
+typedef void (*attr_operator_t)(H5Object& loc,
+                                 const H5std_string attr_name,
+                                 void *operator_data);
+
+// Define the operator function pointer for H5Ovisit2().
+typedef int (*visit_operator_t)(H5Object& obj,
+                                 const H5std_string attr_name,
+                                 const H5O_info_t *oinfo,
+                                 void *operator_data);
 
 // User data for attribute iteration
 class UserData4Aiterate {
     public:
         attr_operator_t op;
         void* opData;
-        H5Object* location;
+        H5Object* location; // Consider changing to H5Location
+};
+
+// User data for visit iteration
+class UserData4Visit {
+    public:
+        visit_operator_t op;
+        void* opData;
+        H5Object* obj;
 };
 
 class H5_DLLCPP H5Object : public H5Location {
@@ -71,6 +85,9 @@ class H5_DLLCPP H5Object : public H5Location {
         // Iterate user's function over the attributes of this object.
         int iterateAttrs(attr_operator_t user_op, unsigned* idx = NULL, void* op_data = NULL);
 
+        // Recursively visit elements reachable from this object.
+        void visit(H5_index_t idx_type, H5_iter_order_t order, visit_operator_t user_op, void *op_data, unsigned int fields);
+
         // Returns the object header version of an object
         unsigned objVersion() const;
 
@@ -98,6 +115,7 @@ class H5_DLLCPP H5Object : public H5Location {
         ssize_t getObjName(H5std_string& obj_name, size_t len = 0) const;
         H5std_string getObjName() const;
 
+
 #ifndef DOXYGEN_SHOULD_SKIP_THIS
 
    protected:

c++/src/H5PropList.cpp

@@ -149,8 +149,8 @@ PropList::PropList(const hid_t plist_id) : IdComponent()
         case H5I_DATASPACE:
         case H5I_DATASET:
         case H5I_ATTR:
-        case H5I_REFERENCE:
         case H5I_VFL:
+        case H5I_VOL:
         case H5I_ERROR_CLASS:
         case H5I_ERROR_MSG:
         case H5I_ERROR_STACK:

c++/src/H5StrType.cpp

@@ -186,6 +186,7 @@ StrType::StrType(const H5Location& loc, const H5std_string& dtype_name) : AtomTy
 // Function:    StrType::decode
 ///\brief       Returns an StrType object via DataType* by decoding the
 ///             binary object description of this type.
+///
 ///\exception   H5::DataTypeIException
 // Programmer   Binh-Minh Ribler - Aug 2017
 //--------------------------------------------------------------------------

c++/src/H5VarLenType.cpp

@@ -133,6 +133,7 @@ VarLenType::VarLenType(const H5Location& loc, const H5std_string& dtype_name) :
 // Function:    VarLenType::decode
 ///\brief       Returns an VarLenType object via DataType* by decoding the
 ///             binary object description of this type.
+///
 ///\exception   H5::DataTypeIException
 // Programmer   Binh-Minh Ribler - Aug 2017
 //--------------------------------------------------------------------------

c++/src/Makefile.am

@@ -32,15 +32,15 @@ bin_SCRIPTS=h5c++
 
 # Source files for the library
 libhdf5_cpp_la_SOURCES=H5Exception.cpp H5IdComponent.cpp	\
-	H5DataSpace.cpp H5PropList.cpp H5Library.cpp			\
-	H5FaccProp.cpp H5FcreatProp.cpp H5LcreatProp.cpp		\
-	H5LaccProp.cpp H5DaccProp.cpp H5DxferProp.cpp			\
+    H5DataSpace.cpp H5PropList.cpp H5Library.cpp			\
+    H5FaccProp.cpp H5FcreatProp.cpp H5LcreatProp.cpp		\
+    H5LaccProp.cpp H5DaccProp.cpp H5DxferProp.cpp			\
     H5DcreatProp.cpp H5Location.cpp H5AbstractDs.cpp		\
     H5Attribute.cpp H5Object.cpp H5OcreatProp.cpp			\
-	H5DataType.cpp H5AtomType.cpp H5PredType.cpp			\
+    H5DataType.cpp H5AtomType.cpp H5PredType.cpp			\
     H5EnumType.cpp H5IntType.cpp H5FloatType.cpp			\
     H5StrType.cpp H5ArrayType.cpp H5VarLenType.cpp			\
-	H5CompType.cpp H5DataSet.cpp H5CommonFG.cpp H5Group.cpp	\
+    H5CompType.cpp H5DataSet.cpp H5CommonFG.cpp H5Group.cpp	\
     H5File.cpp
 
 # HDF5 C++ library depends on HDF5 Library.

c++/src/cpp_doc_config

@@ -38,7 +38,7 @@ PROJECT_NAME           =
 # could be handy for archiving the generated documentation or if some version
 # control system is used.
 
-PROJECT_NUMBER         = "1.11.2"
+PROJECT_NUMBER         = "1.11.4"
 
 # Using the PROJECT_BRIEF tag one can provide an optional one line description
 # for a project that appears at the top of each page and should give viewer a

c++/test/CMakeTests.cmake

@@ -47,55 +47,12 @@ else ()
 endif ()
 set_tests_properties (CPP_testhdf5 PROPERTIES DEPENDS CPP_testhdf5-clear-objects)
 
+##############################################################################
+##############################################################################
+###                         V F D   T E S T S                              ###
+##############################################################################
+##############################################################################
+
 if (HDF5_TEST_VFD)
-
-  set (VFD_LIST
-      sec2
-      stdio
-      core
-      split
-      multi
-      family
-  )
-
-  if (DIRECT_VFD)
-    set (VFD_LIST ${VFD_LIST} direct)
-  endif ()
-
-  macro (ADD_VFD_TEST vfdname resultcode)
-    if (NOT HDF5_ENABLE_USING_MEMCHECKER)
-      file (MAKE_DIRECTORY "${PROJECT_BINARY_DIR}/${vfdname}")
-      add_test (
-          NAME CPP_VFD-${vfdname}-cpp_testhdf5-clear-objects
-          COMMAND    ${CMAKE_COMMAND}
-              -E remove
-                  tattr_basic.h5
-                  tattr_compound.h5
-                  tattr_dtype.h5
-                  tattr_multi.h5
-                  tattr_scalar.h5
-                  tfattrs.h5
-                  titerate.h5
-      )
-      add_test (
-        NAME CPP_VFD-${vfdname}-cpp_testhdf5
-        COMMAND "${CMAKE_COMMAND}"
-            -D "TEST_PROGRAM=$<TARGET_FILE:cpp_testhdf5>"
-            -D "TEST_ARGS:STRING="
-            -D "TEST_VFD:STRING=${vfdname}"
-            -D "TEST_EXPECT=${resultcode}"
-            -D "TEST_OUTPUT=cpp_testhdf5"
-            -D "TEST_FOLDER=${PROJECT_BINARY_DIR}/${vfdname}"
-            -P "${HDF_RESOURCES_DIR}/vfdTest.cmake"
-      )
-      set_tests_properties (CPP_VFD-${vfdname}-cpp_testhdf5 PROPERTIES DEPENDS CPP_VFD-${vfdname}-cpp_testhdf5-clear-objects)
-      set_tests_properties (CPP_VFD-${vfdname}-cpp_testhdf5 PROPERTIES TIMEOUT 30)
-    endif ()
-  endmacro ()
-
-  # Run test with different Virtual File Driver
-  foreach (vfd ${VFD_LIST})
-    ADD_VFD_TEST (${vfd} 0)
-  endforeach ()
-
+  include (CMakeVFDTests.cmake)
 endif ()

c++/test/CMakeVFDTests.cmake

@@ -0,0 +1,65 @@
+#
+# Copyright by The HDF Group.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the COPYING file, which can be found at the root of the source code
+# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# If you do not have access to either file, you may request a copy from
+# help@hdfgroup.org.
+#
+
+##############################################################################
+##############################################################################
+###           T E S T I N G                                                ###
+##############################################################################
+##############################################################################
+  set (VFD_LIST
+      sec2
+      stdio
+      core
+      split
+      multi
+      family
+  )
+
+  if (DIRECT_VFD)
+    set (VFD_LIST ${VFD_LIST} direct)
+  endif ()
+
+  macro (ADD_VFD_TEST vfdname resultcode)
+    if (NOT HDF5_ENABLE_USING_MEMCHECKER)
+      file (MAKE_DIRECTORY "${PROJECT_BINARY_DIR}/${vfdname}")
+      add_test (
+          NAME CPP_VFD-${vfdname}-cpp_testhdf5-clear-objects
+          COMMAND    ${CMAKE_COMMAND}
+              -E remove
+                  tattr_basic.h5
+                  tattr_compound.h5
+                  tattr_dtype.h5
+                  tattr_multi.h5
+                  tattr_scalar.h5
+                  tfattrs.h5
+                  titerate.h5
+      )
+      add_test (
+        NAME CPP_VFD-${vfdname}-cpp_testhdf5
+        COMMAND "${CMAKE_COMMAND}"
+            -D "TEST_PROGRAM=$<TARGET_FILE:cpp_testhdf5>"
+            -D "TEST_ARGS:STRING="
+            -D "TEST_VFD:STRING=${vfdname}"
+            -D "TEST_EXPECT=${resultcode}"
+            -D "TEST_OUTPUT=cpp_testhdf5"
+            -D "TEST_FOLDER=${PROJECT_BINARY_DIR}/${vfdname}"
+            -P "${HDF_RESOURCES_DIR}/vfdTest.cmake"
+      )
+      set_tests_properties (CPP_VFD-${vfdname}-cpp_testhdf5 PROPERTIES DEPENDS CPP_VFD-${vfdname}-cpp_testhdf5-clear-objects)
+      set_tests_properties (CPP_VFD-${vfdname}-cpp_testhdf5 PROPERTIES TIMEOUT ${CTEST_SHORT_TIMEOUT})
+    endif ()
+  endmacro ()
+
+  # Run test with different Virtual File Driver
+  foreach (vfd ${VFD_LIST})
+    ADD_VFD_TEST (${vfd} 0)
+  endforeach ()

c++/test/tarray.cpp

@@ -286,7 +286,7 @@ H5::DataType getArr()
     *dims = 5; 
     H5::ArrayType ret; 
     ret = H5::ArrayType(H5::PredType::NATIVE_INT, 1, dims); 
-    delete[] dims; 
+    delete dims; 
     return ret;
 }
 
@@ -371,7 +371,6 @@ static void test_array_info()
     s1_t rdata[SPACE1_DIM1][ARRAY1_DIM1];   // Information read in
     hsize_t sdims1[] = {SPACE1_DIM1};
     hsize_t tdims1[] = {ARRAY1_DIM1};
-    int     nmemb;      // Number of compound members
     int     ii;         // counting variables
     hsize_t idxi, idxj, idxk; // dimension indicing variables
     H5T_class_t mclass; // Datatype class for field

c++/test/tattr.cpp

@@ -1712,7 +1712,7 @@ static void test_attr_dense_create(FileCreatPropList& fcpl,
         // Close property list
         dcpl.close();
 
-        // H5O_is_attr_dense_test - un-usable
+        // H5O__is_attr_dense_test - un-usable
 
         // Add attributes, until just before converting to dense storage
         char attr_name[NAME_BUF_SIZE];
@@ -1727,7 +1727,7 @@ static void test_attr_dense_create(FileCreatPropList& fcpl,
             attr.write(PredType::NATIVE_UINT, &attr_num);
         } // end for
 
-        // H5O_is_attr_dense_test - un-usable
+        // H5O__is_attr_dense_test - un-usable
 
         { // Add one more attribute, to push into "dense" storage
 
@@ -1815,8 +1815,8 @@ static void test_attr_corder_create_basic(FileCreatPropList& fcpl,
         ds_space.close();
 
         // Check on dataset's attribute storage status.
-        // NOTE: Wrappers not available yet (H5O_is_attr_empty_test
-        // and H5O_is_attr_dense_test)
+        // NOTE: Wrappers not available yet (H5O__is_attr_empty_test
+        // and H5O__is_attr_dense_test)
 
         // Close dataset
         dataset.close();

c++/test/tlinks.cpp

@@ -31,288 +31,27 @@ using namespace H5;
 #include "h5test.h"
 #include "h5cpputil.h"  // C++ utilility header file
 
-// A lot of the definition inherited from C test links.c is left here until
-// the H5L API is implemented and tests are completed - BMR 10/19/2009
-/*
- * This file needs to access private information from the H5G package.
- * This file also needs to access the group testing code.
- */
-//#define H5G_FRIEND
-//#define H5G_TESTING
-
-//#include "h5test.h"
-//#include "H5Gpkg.h"     /* Groups */
-//#include "H5Iprivate.h" /* IDs */
-//#include "H5Lprivate.h" /* Links */
-
-/* File for external link test.  Created with gen_udlinks.c */
-#define LINKED_FILE  "be_extlink2.h5"
-
-#if 0
-const char *FILENAME[] = {
-    "links0",
-    "links1",
-    "links2",
-    "links3",
-    "links4a", /* 4 */
-    "links4b", /* 5 */
-    "links4c", /* 6 */
-    "links4d", /* 7 */
-    "links5",  /* 8 */
-    "links6",  /* 9 */
-    "links7",  /* 10 */
-    "links8",  /* 11 */
-    "extlinks0",        /* 12: main files */
-    "tmp/extlinks0",    /* 13: */
-    "extlinks1",        /* 14: target files */
-    "tmp/extlinks1",    /* 15: */
-    "extlinks2",        /* 16: */
-    "tmp/extlinks2",    /* 17: */
-    "extlinks3",        /* 18: */
-    "tmp/extlinks3",    /* 19: */
-    "extlinks4",        /* 20: */
-    "tmp/extlinks4",    /* 21: */
-    "extlinks5",        /* 22: */
-    "tmp/extlinks6",    /* 23: */
-    "extlinks7",        /* 24: */
-    "tmp/extlinks7",    /* 25: */
-    "tmp/extlinks8",    /* 26: */
-    "extlinks9",        /* 27: */
-    "tmp/extlinks9",    /* 28: */
-    "extlinks10",       /* 29: */ /* TESTS for windows */
-    "tmp/extlinks10",   /* 30: */
-    "tmp/extlinks11",   /* 31: */
-    "tmp/extlinks12",   /* 32: */
-    "extlinks13",       /* 33: */
-    "tmp/extlinks13",   /* 34: */
-    "tmp/extlinks14",   /* 35: */
-    "tmp/extlinks15",   /* 36: */
-    "extlinks16A",      /* 37: */ /* TESTS for H5P_set_elink_fapl */
-    "extlinks16B",      /* 38: */
-    "extlinks17",       /* 39: */
-    "extlinks18A",      /* 40: */
-    "extlinks18B",      /* 41: */
-    "extlinks19A",      /* 42: */
-    "extlinks19B",      /* 43: */
-    "extlinks20",       /* 44: */
-    NULL
-};
-
-#endif // 0
-
-#define TMPDIR          "tmp"
-
-#define FAMILY_SIZE     1024
-#define CORE_INCREMENT  1024
-#define NUM400          400
-
-/* do not do check_all_closed() for "ext*" files and "tmp/ext*" */
-#define EXTSTOP         12
-
-#define LINK_BUF_SIZE   1024
 #define NAME_BUF_SIZE   1024
-#define MAX_NAME_LEN    ((64*1024)+1024)
-
-/* Link type IDs */
-#define UD_HARD_TYPE 201
-#define UD_CB_TYPE H5L_TYPE_MAX
-#define UD_PLIST_TYPE 128
-#define UD_CBFAIL_TYPE UD_PLIST_TYPE
-#define UD_ERROR_TYPE 189
-#define UD_BAD_TYPE1 H5L_TYPE_HARD
-#define UD_BAD_TYPE2 (H5L_TYPE_UD_MIN - 5)
-#define UD_BAD_VERS (H5L_LINK_CLASS_T_VERS + 1)
-
-#define DEST_PROP_NAME "destination_group"
-#define REREG_TARGET_NAME "rereg_target"
-
-#define UD_CB_LINK_NAME "ud_callback_link"
-#define NEW_UD_CB_LINK_NAME "ud_callback_link2"
-#define UD_CB_TARGET "ud_target"
-#define UD_CB_TARGET_LEN 10
-
-#define LE_FILENAME "le_extlink1.h5"
-#define BE_FILENAME "be_extlink1.h5"
-
-#define ELINK_CB_FAM_SIZE (hsize_t) 100
-
 #define H5L_DIM1 100
 #define H5L_DIM2 100
 
-/* Creation order macros */
-#define CORDER_SOFT_GROUP_NAME  "corder_soft_group"
-#define CORDER_NLINKS               18
-
-/* Timestamp macros */
-#define TIMESTAMP_GROUP_1       "timestamp1"
-#define TIMESTAMP_GROUP_2       "timestamp2"
-
-/* Link iteration struct */
-typedef struct {
-    H5_iter_order_t order;      /* Direction of iteration */
-    unsigned ncalled;           /* # of times callback is entered */
-    unsigned nskipped;          /* # of links skipped */
-    int stop;                   /* # of iterations to stop after */
-    int64_t curr;               /* Current creation order value */
-    size_t max_visit;           /* Size of "visited link" flag array */
-    hbool_t *visited;           /* Pointer to array of "visited link" flags */
-} link_iter_info_t;
-
-#if 0
-/* Link visit structs */
-typedef struct {
-    const char *path;           /* Path to link */
-    H5L_type_t type;            /* Type of link */
-} link_visit_t;
-static const link_visit_t lvisit0[] = {
-    {"Dataset_zero", H5L_TYPE_HARD},
-    {"Group1", H5L_TYPE_HARD},
-    {"Group1/Dataset_one", H5L_TYPE_HARD},
-    {"Group1/Group2", H5L_TYPE_HARD},
-    {"Group1/Group2/Dataset_two", H5L_TYPE_HARD},
-    {"Group1/Group2/Type_two", H5L_TYPE_HARD},
-    {"Group1/Group2/hard_zero", H5L_TYPE_HARD},
-    {"Group1/Type_one", H5L_TYPE_HARD},
-    {"Group1/hard_one", H5L_TYPE_HARD},
-    {"Type_zero", H5L_TYPE_HARD},
-    {"ext_dangle", H5L_TYPE_EXTERNAL},
-    {"ext_one", H5L_TYPE_EXTERNAL},
-    {"hard_one", H5L_TYPE_HARD},
-    {"hard_two", H5L_TYPE_HARD},
-    {"hard_zero", H5L_TYPE_HARD},
-    {"soft_dangle", H5L_TYPE_SOFT},
-    {"soft_one", H5L_TYPE_SOFT},
-    {"soft_two", H5L_TYPE_SOFT}
-};
-static const link_visit_t lvisit1[] = {
-    {"Dataset_one", H5L_TYPE_HARD},
-    {"Group2", H5L_TYPE_HARD},
-    {"Group2/Dataset_two", H5L_TYPE_HARD},
-    {"Group2/Type_two", H5L_TYPE_HARD},
-    {"Group2/hard_zero", H5L_TYPE_HARD},
-    {"Group2/hard_zero/Dataset_zero", H5L_TYPE_HARD},
-    {"Group2/hard_zero/Group1", H5L_TYPE_HARD},
-    {"Group2/hard_zero/Type_zero", H5L_TYPE_HARD},
-    {"Group2/hard_zero/ext_dangle", H5L_TYPE_EXTERNAL},
-    {"Group2/hard_zero/ext_one", H5L_TYPE_EXTERNAL},
-    {"Group2/hard_zero/hard_one", H5L_TYPE_HARD},
-    {"Group2/hard_zero/hard_two", H5L_TYPE_HARD},
-    {"Group2/hard_zero/hard_zero", H5L_TYPE_HARD},
-    {"Group2/hard_zero/soft_dangle", H5L_TYPE_SOFT},
-    {"Group2/hard_zero/soft_one", H5L_TYPE_SOFT},
-    {"Group2/hard_zero/soft_two", H5L_TYPE_SOFT},
-    {"Type_one", H5L_TYPE_HARD},
-    {"hard_one", H5L_TYPE_HARD}
-};
-static const link_visit_t lvisit2[] = {
-    {"Dataset_two", H5L_TYPE_HARD},
-    {"Type_two", H5L_TYPE_HARD},
-    {"hard_zero", H5L_TYPE_HARD},
-    {"hard_zero/Dataset_zero", H5L_TYPE_HARD},
-    {"hard_zero/Group1", H5L_TYPE_HARD},
-    {"hard_zero/Group1/Dataset_one", H5L_TYPE_HARD},
-    {"hard_zero/Group1/Group2", H5L_TYPE_HARD},
-    {"hard_zero/Group1/Type_one", H5L_TYPE_HARD},
-    {"hard_zero/Group1/hard_one", H5L_TYPE_HARD},
-    {"hard_zero/Type_zero", H5L_TYPE_HARD},
-    {"hard_zero/ext_dangle", H5L_TYPE_EXTERNAL},
-    {"hard_zero/ext_one", H5L_TYPE_EXTERNAL},
-    {"hard_zero/hard_one", H5L_TYPE_HARD},
-    {"hard_zero/hard_two", H5L_TYPE_HARD},
-    {"hard_zero/hard_zero", H5L_TYPE_HARD},
-    {"hard_zero/soft_dangle", H5L_TYPE_SOFT},
-    {"hard_zero/soft_one", H5L_TYPE_SOFT},
-    {"hard_zero/soft_two", H5L_TYPE_SOFT}
-};
-
-typedef struct {
-    unsigned idx;               /* Index in link visit structure */
-    const link_visit_t *info;   /* Pointer to the link visit structure to use */
-} lvisit_ud_t;
-
-
-/* Object visit structs */
+// Object visit structs
 typedef struct {
     const char *path;           /* Path to object */
     H5O_type_t type;            /* Type of object */
 } obj_visit_t;
-static const obj_visit_t ovisit0_old[] = {
-    {".", H5O_TYPE_GROUP},
-    {"Dataset_zero", H5O_TYPE_DATASET},
-    {"Group1", H5O_TYPE_GROUP},
-    {"Group1/Dataset_one", H5O_TYPE_DATASET},
-    {"Group1/Group2", H5O_TYPE_GROUP},
-    {"Group1/Group2/Dataset_two", H5O_TYPE_DATASET},
-    {"Group1/Group2/Type_two", H5O_TYPE_NAMED_DATATYPE},
-    {"Group1/Type_one", H5O_TYPE_NAMED_DATATYPE},
-    {"Type_zero", H5O_TYPE_NAMED_DATATYPE}
-};
-static const obj_visit_t ovisit0_new[] = {
-    {".", H5O_TYPE_GROUP},
-    {"Dataset_zero", H5O_TYPE_DATASET},
-    {"Group1", H5O_TYPE_GROUP},
-    {"Group1/Dataset_one", H5O_TYPE_DATASET},
-    {"Group1/Group2", H5O_TYPE_GROUP},
-    {"Group1/Group2/Dataset_two", H5O_TYPE_DATASET},
-    {"Group1/Group2/Type_two", H5O_TYPE_NAMED_DATATYPE},
-    {"Group1/Type_one", H5O_TYPE_NAMED_DATATYPE},
-    {"Type_zero", H5O_TYPE_NAMED_DATATYPE}
-};
-static const obj_visit_t ovisit1_old[] = {
-    {".", H5O_TYPE_GROUP},
-    {"Dataset_one", H5O_TYPE_DATASET},
-    {"Group2", H5O_TYPE_GROUP},
-    {"Group2/Dataset_two", H5O_TYPE_DATASET},
-    {"Group2/Type_two", H5O_TYPE_NAMED_DATATYPE},
-    {"Group2/hard_zero", H5O_TYPE_GROUP},
-    {"Group2/hard_zero/Dataset_zero", H5O_TYPE_DATASET},
-    {"Group2/hard_zero/Type_zero", H5O_TYPE_NAMED_DATATYPE},
-    {"Type_one", H5O_TYPE_NAMED_DATATYPE}
-};
-static const obj_visit_t ovisit1_new[] = {
-    {".", H5O_TYPE_GROUP},
-    {"Dataset_one", H5O_TYPE_DATASET},
-    {"Group2", H5O_TYPE_GROUP},
-    {"Group2/Dataset_two", H5O_TYPE_DATASET},
-    {"Group2/Type_two", H5O_TYPE_NAMED_DATATYPE},
-    {"Group2/hard_zero", H5O_TYPE_GROUP},
-    {"Group2/hard_zero/Dataset_zero", H5O_TYPE_DATASET},
-    {"Group2/hard_zero/Type_zero", H5O_TYPE_NAMED_DATATYPE},
-    {"Type_one", H5O_TYPE_NAMED_DATATYPE}
-};
-static const obj_visit_t ovisit2_old[] = {
-    {".", H5O_TYPE_GROUP},
-    {"Dataset_two", H5O_TYPE_DATASET},
-    {"Type_two", H5O_TYPE_NAMED_DATATYPE},
-    {"hard_zero", H5O_TYPE_GROUP},
-    {"hard_zero/Dataset_zero", H5O_TYPE_DATASET},
-    {"hard_zero/Group1", H5O_TYPE_GROUP},
-    {"hard_zero/Group1/Dataset_one", H5O_TYPE_DATASET},
-    {"hard_zero/Group1/Type_one", H5O_TYPE_NAMED_DATATYPE},
-    {"hard_zero/Type_zero", H5O_TYPE_NAMED_DATATYPE}
-};
-static const obj_visit_t ovisit2_new[] = {
-    {".", H5O_TYPE_GROUP},
-    {"Dataset_two", H5O_TYPE_DATASET},
-    {"Type_two", H5O_TYPE_NAMED_DATATYPE},
-    {"hard_zero", H5O_TYPE_GROUP},
-    {"hard_zero/Dataset_zero", H5O_TYPE_DATASET},
-    {"hard_zero/Group1", H5O_TYPE_GROUP},
-    {"hard_zero/Group1/Dataset_one", H5O_TYPE_DATASET},
-    {"hard_zero/Group1/Type_one", H5O_TYPE_NAMED_DATATYPE},
-    {"hard_zero/Type_zero", H5O_TYPE_NAMED_DATATYPE}
-};
 
+// User data for callback function
 typedef struct {
     unsigned idx;               /* Index in object visit structure */
     const obj_visit_t *info;    /* Pointer to the object visit structure to use */
 } ovisit_ud_t;
-#endif
 
 static const char *FILENAME[] = {
     "link0",
     "link1.h5",
     "link2.h5",
+    "visit",
     NULL
 };
 
@@ -841,6 +580,140 @@ static void test_num_links(hid_t fapl_id, hbool_t new_format)
     }
 } // test_num_links
 
+
+// Data for visit on the file
+static const obj_visit_t file_visit[] = {
+    {".", H5O_TYPE_GROUP},
+    {"Data", H5O_TYPE_GROUP},
+    {"Data/Compressed_Data", H5O_TYPE_DATASET},
+    {"Data/Float_Data", H5O_TYPE_DATASET},
+};
+
+// Data for visit on the group
+static const obj_visit_t group_visit[] = {
+    {".", H5O_TYPE_GROUP},
+    {"Compressed_Data", H5O_TYPE_DATASET},
+    {"Float_Data", H5O_TYPE_DATASET},
+};
+
+const H5std_string FILE_NAME("tvisit.h5");
+const H5std_string GROUP_NAME("/Data");
+const H5std_string DSET1_NAME("/Data/Compressed_Data");
+const H5std_string DSET2_NAME("/Data/Float_Data");
+const int RANK = 2;
+const int DIM1 = 2;
+
+// Operator function
+static int visit_obj_cb(H5Object& obj, const H5std_string name, const H5O_info_t *oinfo, void *_op_data)
+{
+    ovisit_ud_t *op_data = static_cast <ovisit_ud_t *>(_op_data);
+
+    // Check for correct object information
+    if(strcmp(op_data->info[op_data->idx].path, name.c_str())) return(H5_ITER_ERROR);
+    if(op_data->info[op_data->idx].type != oinfo->type) return(H5_ITER_ERROR);
+
+    // Advance to next location
+    op_data->idx++;
+
+    return(H5_ITER_CONT);
+}
+
+/*-------------------------------------------------------------------------
+ * Function:    test_visit
+ *
+ * Purpose      Test H5Object::visit
+ *
+ * Return       None
+ *
+ * February 8, 2019
+ *-------------------------------------------------------------------------
+ */
+static void test_visit(hid_t fapl_id, hbool_t new_format)
+{
+    hsize_t  dims[2];
+    hsize_t  cdims[2];
+    char filename[NAME_BUF_SIZE];
+
+    if(new_format)
+        SUBTEST("H5Object::visit (w/new group format)")
+    else
+        SUBTEST("H5Object::visit")
+
+    try
+    {
+        // Use the file access template id to create a file access prop. list
+        FileAccPropList fapl(fapl_id);
+
+        // Build the hdf5 file name and create the file
+        h5_fixname(FILENAME[3], fapl_id, filename, sizeof filename);
+	    H5File *file = new H5File(filename, H5F_ACC_TRUNC, FileCreatPropList::DEFAULT, fapl);
+
+        // Create a group
+	    Group* group = new Group(file->createGroup(GROUP_NAME));
+
+        // Create a chunked/compressed dataset within this group specified by path
+	    dims[0] = 20;
+	    dims[1] = 2;
+	    cdims[0] = 2;
+	    cdims[1] = 2;
+	    DataSpace *dataspace = new DataSpace(RANK, dims); // create new dspace
+	    DSetCreatPropList ds_creatplist;  // create dataset creation prop list
+	    ds_creatplist.setChunk(2, cdims);  // then modify it for compression
+	    ds_creatplist.setDeflate(6);
+
+	    DataSet* dataset = new DataSet(file->createDataSet(DSET1_NAME,
+                        PredType::NATIVE_INT, *dataspace, ds_creatplist));
+
+	    delete dataset;
+	    delete dataspace;
+
+	    // Create another dataset
+	    dims[0] = 5;
+	    dims[1] = 2;
+	    dataspace = new DataSpace(RANK, dims); // create second dspace
+	    dataset = new DataSet(file->createDataSet(DSET2_NAME,
+			            PredType::NATIVE_FLOAT, *dataspace));
+
+        // Close everything
+	    delete dataset;
+	    delete dataspace;
+	    delete group;
+	    delete file;
+
+	    // Reopen the file and group in the file.
+	    file = new H5File(filename, H5F_ACC_RDWR);
+	    group = new Group(file->openGroup("Data"));
+
+        // Open the group
+	    dataset = new DataSet(group->openDataSet(DSET2_NAME));
+        delete dataset;
+
+        // Visit objects in the file
+        ovisit_ud_t udata;          /* User-data for visiting */
+        udata.idx = 0;
+        udata.info = file_visit;
+
+        file->visit(H5_INDEX_NAME, H5_ITER_INC, visit_obj_cb, &udata, H5O_INFO_BASIC);
+
+        // Visit objects in the group
+        udata.idx = 0;
+        udata.info = group_visit;
+
+        group->visit(H5_INDEX_NAME, H5_ITER_INC, visit_obj_cb, &udata, H5O_INFO_BASIC);
+
+	    // Close the group and file.
+	    delete group;
+	    delete file;
+
+        PASSED();
+    } // end of try block
+    catch (Exception& E)
+    {
+  cerr << "in catch" << endl;
+        issue_fail_msg("test_visit()", __LINE__, __FILE__, E.getCDetailMsg());
+    }
+} // test_visit()
+
 
 /*-------------------------------------------------------------------------
  * Function:    test_links
@@ -857,13 +730,9 @@ void test_links()
 {
     hid_t        fapl_id, fapl2_id;    /* File access property lists */
     unsigned new_format;     /* Whether to use the new format or not */
-    const char  *envval;
 
-    envval = HDgetenv("HDF5_DRIVER");
-    if(envval == NULL)
-        envval = "nomatch";
-
-    fapl_id = h5_fileaccess();
+    if((fapl_id = h5_fileaccess()) < 0)
+        throw Exception("test_links", "Unable to get file access property list");
 
     // Output message about test being performed
     MESSAGE(5, ("Testing Various Links\n"));
@@ -896,24 +765,18 @@ void test_links()
             test_move(my_fapl_id, new_format);
             test_copy(my_fapl_id, new_format);
             test_lcpl(my_fapl_id, new_format);
+            test_visit(my_fapl_id, new_format);
         } /* end for */
 
         /* Close 2nd FAPL */
         H5Pclose(fapl2_id);
 
         h5_clean_files(FILENAME, fapl_id);
-
-        /* Test that external links can be used after a library reset.  MUST be
-        * called last so the reset doesn't interfere with the property lists.  This
-        * routine will delete its own file. */
-        /* nerrors += external_reset_register() < 0 ? 1 : 0;
- */
     }
     catch (Exception& E)
     {
         issue_fail_msg("test_links()", __LINE__, __FILE__, E.getCDetailMsg());
     }
-
 }
 
 
@@ -931,7 +794,3 @@ void cleanup_links()
     HDremove(FILENAME[0]);
     HDremove(FILENAME[1]);
 }
-
-
-
-

c++/test/tobject.cpp

@@ -609,10 +609,10 @@ static void test_getobjectinfo_same_file()
     catch (Exception& E)
     {
         cerr << " in Exception " << E.getCFuncName() << "detail: " << E.getCDetailMsg() << endl;
-        issue_fail_msg("test_file_name()", __LINE__, __FILE__, E.getCDetailMsg());
+        issue_fail_msg("test_getobjectinfo_same_file()", __LINE__, __FILE__, E.getCDetailMsg());
     }
 
-}   // test_h5o_getinfo_same_file
+}   // test_getobjectinfo_same_file
 
 /*-------------------------------------------------------------------------
  * Function:    test_object

config/cmake/CTestCustom.cmake

@@ -41,16 +41,20 @@ set (CTEST_CUSTOM_MEMCHECK_IGNORE
     H5TEST-err_compat       #uses runTest.cmake
     H5TEST-links_env        #uses runTest.cmake
     H5TEST-testlibinfo      #uses grepTest.cmake
-    H5TEST-clear-testhdf5-objects
+    #########
     H5TEST-clear-objects
     H5TEST-clear-cache-objects
     H5TEST-clear-cache_api-objects
     H5TEST-clear-cache_image-objects
     H5TEST-clear-cache_tagging-objects
+    H5TEST-clear-del_many_dense_attrs-objects
     H5TEST-clear-err_compat-objects
     H5TEST-clear-error_test-objects
     H5TEST-clear-filenotclosed-objects
+    H5TEST-clear-flush-objects
     H5TEST-clear-links_env-objects
+    H5TEST-clear-testflushrefresh-objects
+    H5TEST-clear-testhdf5-objects
     H5TEST-clear-ttsafe-objects
     PERFORM_h5perform-clear-objects
     HL_TOOLS-clear-objects
@@ -60,11 +64,19 @@ set (CTEST_CUSTOM_MEMCHECK_IGNORE
     CPP_testhdf5-clear-objects
     ######### tools/h5clear #########
     H5CLEAR-clearall-objects
+    H5CLEAR-copy_h5clear_fsm_persist_equal.h5
+    H5CLEAR-copy_h5clear_fsm_persist_greater.h5
+    H5CLEAR-copy_h5clear_fsm_persist_less.h5
+    H5CLEAR-copy_h5clear_fsm_persist_noclose.h5
+    H5CLEAR-copy_h5clear_fsm_persist_user_equal.h5
+    H5CLEAR-copy_h5clear_fsm_persist_user_greater.h5
+    H5CLEAR-copy_h5clear_fsm_persist_user_less.h5
     H5CLEAR-copy_h5clear_log_v3.h5
     H5CLEAR-copy_h5clear_mdc_image.h5
     H5CLEAR-copy_h5clear_sec2_v0.h5
     H5CLEAR-copy_h5clear_sec2_v2.h5
     H5CLEAR-copy_h5clear_sec2_v3.h5
+    H5CLEAR-copy_h5clear_status_noclear.h5
     H5CLEAR-copy_latest_h5clear_log_v3.h5
     H5CLEAR-copy_latest_h5clear_sec2_v3.h5
     H5CLEAR-copy_mod_h5clear_mdc_image.h5
@@ -307,6 +319,11 @@ set (CTEST_CUSTOM_MEMCHECK_IGNORE
     H5REPACK_VERIFY_LAYOUT_ALL-layout_short_switches    #uses grepTest.cmake
     H5REPACK-plugin
     H5REPACK_CMP-plugin_zero
+    #########
+    ADD_H5_VERIFY_INVALIDBOUNDS-h5repack-latest_latest_invalid-clear-objects
+    H5REPACK_VERIFY_SUPERBLOCK-SB_IS_0-clear-objects
+    H5REPACK_VERIFY_SUPERBLOCK-SB_IS_2-clear-objects
+    H5REPACK_VERIFY_SUPERBLOCK-SB_IS_3-clear-objects
     ######### tools/h5stat #########
     H5STAT-clearall-objects
     ######### tools/misc #########

config/cmake/ConfigureChecks.cmake

@@ -28,15 +28,6 @@ if (HDF5_STRICT_FORMAT_CHECKS)
 endif ()
 MARK_AS_ADVANCED (HDF5_STRICT_FORMAT_CHECKS)
 
-#-----------------------------------------------------------------------------
-# Option for --enable-metadata-trace-file
-#-----------------------------------------------------------------------------
-option (HDF5_METADATA_TRACE_FILE "Enable metadata trace file collection" OFF)
-if (HDF5_METADATA_TRACE_FILE)
-  set (${HDF_PREFIX}_METADATA_TRACE_FILE 1)
-endif ()
-MARK_AS_ADVANCED (HDF5_METADATA_TRACE_FILE)
-
 # ----------------------------------------------------------------------
 # Decide whether the data accuracy has higher priority during data
 # conversions.  If not, some hard conversions will still be prefered even
@@ -167,12 +158,17 @@ endif ()
 # Check if C has __float128 extension
 #-----------------------------------------------------------------------------
 
-CHECK_TYPE_SIZE("__float128" SIZEOF___FLOAT128)
-if (${HAVE_SIZEOF___FLOAT128})
+CHECK_TYPE_SIZE("__float128" ${HDF_PREFIX}_SIZEOF___FLOAT128)
+if (${${HDF_PREFIX}_SIZEOF___FLOAT128})
   set (${HDF_PREFIX}_HAVE_FLOAT128 1)
 else ()
   set (${HDF_PREFIX}_HAVE_FLOAT128 0)
-  set (SIZEOF___FLOAT128 0)
+  set (${HDF_PREFIX}_SIZEOF___FLOAT128 0)
+endif ()
+
+CHECK_TYPE_SIZE("_Quad" ${HDF_PREFIX}_SIZEOF__QUAD)
+if (NOT ${${HDF_PREFIX}_SIZEOF__QUAD})
+  set (${HDF_PREFIX}_SIZEOF__QUAD 0)
 endif ()
 
 #-----------------------------------------------------------------------------
@@ -251,6 +247,11 @@ H5ConversionTests (${HDF_PREFIX}_LDOUBLE_TO_LLONG_ACCURATE "Checking IF correctl
 #
 H5ConversionTests (${HDF_PREFIX}_LLONG_TO_LDOUBLE_CORRECT "Checking IF correctly converting (unsigned) long long to long double values")
 # ----------------------------------------------------------------------
+# Set the flag to indicate that the machine can accurately convert
+# some long double values
+#
+H5ConversionTests (${HDF_PREFIX}_DISABLE_SOME_LDOUBLE_CONV "Checking IF the cpu is power9 and cannot correctly converting long double values")
+# ----------------------------------------------------------------------
 # Check if pointer alignments are enforced
 #
 H5ConversionTests (${HDF_PREFIX}_NO_ALIGNMENT_RESTRICTIONS "Checking IF alignment restrictions are strictly enforced")

config/cmake/ConversionTests.c

@@ -9,7 +9,7 @@
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
-+
+
 #if defined(__has_attribute)
 #if __has_attribute(no_sanitize)
 #define HDF_NO_UBSAN __attribute__((no_sanitize("undefined")))
@@ -287,3 +287,27 @@ main ()
 
 #endif
 
+#ifdef H5_DISABLE_SOME_LDOUBLE_CONV_TEST
+
+#include <stdio.h>
+#include <stdlib.h>
+#include <string.h>
+
+int HDF_NO_UBSAN main(void)
+{
+    FILE *fp;
+    char cpu[64];
+
+    fp = popen("uname -m", "r");
+
+    fgets(cpu, sizeof(cpu)-1, fp);
+
+    pclose(fp);
+
+    if(strncmp(cpu, "ppc64le", 7) == 0)
+        return 0;
+
+    return 1;
+}
+
+#endif

config/cmake/H5pubconf.h.in

@@ -30,7 +30,7 @@
 #cmakedefine H5_AC_APPLE_UNIVERSAL_BUILD @H5_AC_APPLE_UNIVERSAL_BUILD@
 
 /* Define if C++ compiler recognizes offsetof */
-#cmakedefine H5_CXX_HAVE_OFFSETOF @H5_CXX_HAVE_OFFSETOF@
+#cmakedefine H5_CXX_HAVE_OFFSETOF @CXX_HAVE_OFFSETOF@
 
 /* Define the default plugins path to compile */
 #cmakedefine H5_DEFAULT_PLUGINDIR "@H5_DEFAULT_PLUGINDIR@"
@@ -74,7 +74,7 @@
 #define H5_Fortran_COMPILER_ID @CMAKE_Fortran_COMPILER_ID@
 
 /* Define valid Fortran INTEGER KINDs */
-#cmakedefine H5_H5CONFIG_F_IKIND @H5_HH5_H5CONFIG_F_NUM_RKIND5CONFIG_F_IKIND@
+#cmakedefine H5_H5CONFIG_F_IKIND @H5_H5CONFIG_F_IKIND@
 
 /* Define number of valid Fortran INTEGER KINDs */
 #cmakedefine H5_H5CONFIG_F_NUM_IKIND @H5_H5CONFIG_F_NUM_IKIND@
@@ -161,24 +161,12 @@
 /* Define to 1 if you have the `fseeko' function. */
 #cmakedefine H5_HAVE_FSEEKO @H5_HAVE_FSEEKO@
 
-/* Define to 1 if you have the `fseeko64' function. */
-#cmakedefine H5_HAVE_FSEEKO64 @H5_HAVE_FSEEKO64@
-
-/* Define to 1 if you have the `fstat64' function. */
-#cmakedefine H5_HAVE_FSTAT64 @H5_HAVE_FSTAT64@
-
-/* Define to 1 if you have the `ftello' function. */
-#cmakedefine H5_HAVE_FTELLO @H5_HAVE_FTELLO@
-
-/* Define to 1 if you have the `ftello64' function. */
-#cmakedefine H5_HAVE_FTELLO64 @H5_HAVE_FTELLO64@
-
-/* Define to 1 if you have the `ftruncate64' function. */
-#cmakedefine H5_HAVE_FTRUNCATE64 @H5_HAVE_FTRUNCATE64@
-
 /* Define if the compiler understands the __FUNCTION__ keyword */
 #cmakedefine H5_HAVE_FUNCTION @H5_HAVE_FUNCTION@
 
+/* Determine if INTEGER*16 is available */
+#cmakedefine H5_HAVE_Fortran_INTEGER_SIZEOF_16 @H5_HAVE_Fortran_INTEGER_SIZEOF_16@
+
 /* Define to 1 if you have the `GetConsoleScreenBufferInfo' function. */
 #cmakedefine H5_HAVE_GETCONSOLESCREENBUFFERINFO @H5_HAVE_GETCONSOLESCREENBUFFERINFO@
 
@@ -270,15 +258,18 @@
 /* Define to 1 if you have the <mpe.h> header file. */
 #cmakedefine H5_HAVE_MPE_H @H5_HAVE_MPE_H@
 
-/* Define if `MPI_Comm_c2f' and `MPI_Comm_f2c' exists */
+/* Define if MPI_Comm_c2f and MPI_Comm_f2c exists */
 #cmakedefine H5_HAVE_MPI_MULTI_LANG_Comm @H5_HAVE_MPI_MULTI_LANG_Comm@
 
-/* Define if `MPI_Info_c2f' and `MPI_Info_f2c' exists */
+/* Define if MPI_Info_c2f and MPI_Info_f2c exists */
 #cmakedefine H5_HAVE_MPI_MULTI_LANG_Info @H5_HAVE_MPI_MULTI_LANG_Info@
 
 /* Define if we have parallel support */
 #cmakedefine H5_HAVE_PARALLEL @H5_HAVE_PARALLEL@
 
+/* Define if both pread and pwrite exist. */
+#cmakedefine H5_HAVE_PREADWRITE @H5_HAVE_PREADWRITE@
+
 /* Define to 1 if you have the <pthread.h> header file. */
 #cmakedefine H5_HAVE_PTHREAD_H @H5_HAVE_PTHREAD_H@
 
@@ -348,22 +339,22 @@
 /* Define to 1 if you have the `strdup' function. */
 #cmakedefine H5_HAVE_STRDUP @H5_HAVE_STRDUP@
 
-/* Define to 1 if you have the `strtoll' function. */
-#cmakedefine H5_HAVE_STRTOLL @H5_HAVE_STRTOLL@
-
-/* Define to 1 if you have the `strtoull' function. */
-#cmakedefine H5_HAVE_STRTOULL @H5_HAVE_STRTOULL@
-
 /* Define to 1 if you have the <strings.h> header file. */
 #cmakedefine H5_HAVE_STRINGS_H @H5_HAVE_STRINGS_H@
 
 /* Define to 1 if you have the <string.h> header file. */
 #cmakedefine H5_HAVE_STRING_H @H5_HAVE_STRING_H@
 
-/* Define if `struct text_info' is defined */
+/* Define to 1 if you have the `strtoll' function. */
+#cmakedefine H5_HAVE_STRTOLL @H5_HAVE_STRTOLL@
+
+/* Define to 1 if you have the `strtoull' function. */
+#cmakedefine H5_HAVE_STRTOULL @H5_HAVE_STRTOULL@
+
+/* Define if struct text_info is defined */
 #cmakedefine H5_HAVE_STRUCT_TEXT_INFO @H5_HAVE_STRUCT_TEXT_INFO@
 
-/* Define if `struct videoconfig' is defined */
+/* Define if struct videoconfig is defined */
 #cmakedefine H5_HAVE_STRUCT_VIDEOCONFIG @H5_HAVE_STRUCT_VIDEOCONFIG@
 
 /* Define to 1 if you have the `symlink' function. */
@@ -399,10 +390,15 @@
 /* Define to 1 if you have the <szlib.h> header file. */
 #cmakedefine H5_HAVE_SZLIB_H @H5_HAVE_SZLIB_H@
 
+#if defined(_WIN32) && !defined(H5_BUILT_AS_DYNAMIC_LIB)
+/* Not supported on WIN32 platforms with static linking */
+/* #undef H5_HAVE_THREADSAFE */
+#else
 /* Define if we have thread safe support */
-#cmakedefine H5_HAVE_THREADSAFE @H5_HAVE_THREADSAFE@
+# cmakedefine H5_HAVE_THREADSAFE @H5_HAVE_THREADSAFE@
+#endif
 
-/* Define if `timezone' is a global variable */
+/* Define if timezone is a global variable */
 #cmakedefine H5_HAVE_TIMEZONE @H5_HAVE_TIMEZONE@
 
 /* Define if the ioctl TIOCGETD is defined */
@@ -414,7 +410,7 @@
 /* Define to 1 if you have the `tmpfile' function. */
 #cmakedefine H5_HAVE_TMPFILE @H5_HAVE_TMPFILE@
 
-/* Define if `tm_gmtoff' is a member of `struct tm' */
+/* Define if tm_gmtoff is a member of struct tm */
 #cmakedefine H5_HAVE_TM_GMTOFF @H5_HAVE_TM_GMTOFF@
 
 /* Define to 1 if you have the <unistd.h> header file. */
@@ -435,7 +431,7 @@
 /* Define if your system has window style path name. */
 #cmakedefine H5_HAVE_WINDOW_PATH @H5_HAVE_WINDOW_PATH@
 
-/* Define to 1 if you have the <winsock.h> header file. */
+/* Define to 1 if you have the <winsock2.h> header file. */
 #cmakedefine H5_HAVE_WINSOCK2_H @H5_HAVE_WINSOCK2_H@
 
 /* Define to 1 if you have the <zlib.h> header file. */
@@ -453,7 +449,7 @@
 /* Define if the compiler understands __inline__ */
 #cmakedefine H5_HAVE___INLINE__ @H5_HAVE___INLINE__@
 
-/* Define if HDF5's high-level library headers should be included in hdf5.h */
+/* Define if the high-level library headers should be included in hdf5.h */
 #cmakedefine H5_INCLUDE_HL @H5_INCLUDE_HL@
 
 /* Define if your system can convert long double to (unsigned) long long
@@ -472,15 +468,15 @@
    with special algorithm. */
 #cmakedefine H5_LONG_TO_LDOUBLE_SPECIAL @H5_LONG_TO_LDOUBLE_SPECIAL@
 
+/* Define if your system is power6 and cannot convert some long double values. */
+#cmakedefine H5_DISABLE_SOME_LDOUBLE_CONV @H5_DISABLE_SOME_LDOUBLE_CONV@
+
 /* Define to the sub-directory where libtool stores uninstalled libraries. */
 #cmakedefine H5_LT_OBJDIR @H5_LT_OBJDIR@
 
 /* Define to enable internal memory allocation sanity checking. */
 /* #cmakedefine H5_MEMORY_ALLOC_SANITY_CHECK @H5_MEMORY_ALLOC_SANITY_CHECK@ ** Define in CMakeLists.txt */
 
-/* Define if the metadata trace file code is to be compiled in */
-#cmakedefine H5_METADATA_TRACE_FILE @H5_METADATA_TRACE_FILE@
-
 /* Define if we can violate pointer alignment restrictions */
 #cmakedefine H5_NO_ALIGNMENT_RESTRICTIONS @H5_NO_ALIGNMENT_RESTRICTIONS@
 
@@ -614,6 +610,9 @@
 /* The size of `short', as computed by sizeof. */
 #cmakedefine H5_SIZEOF_SHORT @H5_SIZEOF_SHORT@
 
+/* The size of `time_t', as computed by sizeof. */
+#cmakedefine H5_SIZEOF_TIME_T @H5_SIZEOF_TIME_T@
+
 /* The size of `uint16_t', as computed by sizeof. */
 #cmakedefine H5_SIZEOF_UINT16_T @H5_SIZEOF_UINT16_T@
 
@@ -681,6 +680,12 @@
 /* Define using v1.8 public API symbols by default */
 #cmakedefine H5_USE_18_API_DEFAULT @H5_USE_18_API_DEFAULT@
 
+/* Define using v1.10 public API symbols by default */
+#cmakedefine H5_USE_110_API_DEFAULT @H5_USE_110_API_DEFAULT@
+
+/* Define using v1.12 public API symbols by default */
+#cmakedefine H5_USE_112_API_DEFAULT @H5_USE_112_API_DEFAULT@
+
 /* Define if a memory checking tool will be used on the library, to cause
    library to be very picky about memory operations and also disable the
    internal free list manager code. */

config/cmake/HDF518_Examples.cmake.in

@@ -1,106 +0,0 @@
-#
-# Copyright by The HDF Group.
-# All rights reserved.
-#
-# This file is part of HDF5.  The full HDF5 copyright notice, including
-# terms governing use, modification, and redistribution, is contained in
-# the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
-# If you do not have access to either file, you may request a copy from
-# help@hdfgroup.org.
-#
-cmake_minimum_required (VERSION 3.10)
-###############################################################################################################
-# This script will build and run the examples from a folder
-# Execute from a command line:
-#     ctest -S HDF518_Examples.cmake,OPTION=VALUE -C Release -VV -O test.log
-###############################################################################################################
-
-set(CTEST_CMAKE_GENERATOR "@CMAKE_GENERATOR@")
-if("@CMAKE_GENERATOR_TOOLSET@")
-  set(CMAKE_GENERATOR_TOOLSET "@CMAKE_GENERATOR_TOOLSET@")
-endif()
-set(CTEST_DASHBOARD_ROOT ${CTEST_SCRIPT_DIRECTORY})
-
-# handle input parameters to script.
-#INSTALLDIR - HDF5-1.8 root folder
-#CTEST_CONFIGURATION_TYPE - Release, Debug, RelWithDebInfo
-#CTEST_SOURCE_NAME - name of source folder; HDF5Examples
-if(DEFINED CTEST_SCRIPT_ARG)
-  # transform ctest script arguments of the form
-  # script.ctest,var1=value1,var2=value2
-  # to variables with the respective names set to the respective values
-  string(REPLACE "," ";" script_args "${CTEST_SCRIPT_ARG}")
-  foreach(current_var ${script_args})
-    if("${current_var}" MATCHES "^([^=]+)=(.+)$")
-      set("${CMAKE_MATCH_1}" "${CMAKE_MATCH_2}")
-    endif()
-  endforeach()
-endif()
-
-###################################################################
-### Following Line is one of [Release, RelWithDebInfo, Debug] #####
-set(CTEST_CONFIGURATION_TYPE "$ENV{CMAKE_CONFIG_TYPE}")
-if(NOT DEFINED CTEST_CONFIGURATION_TYPE)
-  set(CTEST_CONFIGURATION_TYPE "Release")
-endif()
-set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DCTEST_CONFIGURATION_TYPE:STRING=${CTEST_CONFIGURATION_TYPE}")
-##################################################################
-
-if(NOT DEFINED INSTALLDIR)
-  set(INSTALLDIR "@CMAKE_INSTALL_PREFIX@")
-endif()
-
-if(NOT DEFINED CTEST_SOURCE_NAME)
-  set(CTEST_SOURCE_NAME "HDF5Examples")
-endif()
-
-if(NOT DEFINED HDF_LOCAL)
-  set(CDASH_LOCAL "NO")
-else()
-  set(CDASH_LOCAL "YES")
-endif()
-if(NOT DEFINED CTEST_SITE)
-  set(CTEST_SITE "local")
-endif()
-if(NOT DEFINED CTEST_BUILD_NAME)
-  set(CTEST_BUILD_NAME "examples")
-endif()
-set(BUILD_OPTIONS "${BUILD_OPTIONS} -DSITE:STRING=${CTEST_SITE} -DBUILDNAME:STRING=${CTEST_BUILD_NAME}")
-
-#TAR_SOURCE - name of tarfile
-#if(NOT DEFINED TAR_SOURCE)
-#  set(CTEST_USE_TAR_SOURCE "HDF5Examples-1.2.1-Source")
-#endif()
-
-###############################################################################################################
-if(WIN32)
-  set(SITE_OS_NAME "Windows")
-  set(ENV{HDF5_DIR} "${INSTALLDIR}/cmake")
-  set(CTEST_BINARY_NAME ${CTEST_SOURCE_NAME}\\build)
-  set(CTEST_SOURCE_DIRECTORY "${CTEST_DASHBOARD_ROOT}\\${CTEST_SOURCE_NAME}")
-  set(CTEST_BINARY_DIRECTORY "${CTEST_DASHBOARD_ROOT}\\${CTEST_BINARY_NAME}")
-else()
-  set(ENV{HDF5_DIR} "${INSTALLDIR}/share/cmake")
-  set(ENV{LD_LIBRARY_PATH} "${INSTALLDIR}/lib")
-  set(CTEST_BINARY_NAME ${CTEST_SOURCE_NAME}/build)
-  set(CTEST_SOURCE_DIRECTORY "${CTEST_DASHBOARD_ROOT}/${CTEST_SOURCE_NAME}")
-  set(CTEST_BINARY_DIRECTORY "${CTEST_DASHBOARD_ROOT}/${CTEST_BINARY_NAME}")
-endif()
-if(${CDASH_LOCAL})
-  set(BUILD_OPTIONS "${BUILD_OPTIONS} -DCDASH_LOCAL:BOOL=ON")
-endif()
-set(BUILD_OPTIONS "${BUILD_OPTIONS} -DHDF5_PACKAGE_NAME:STRING=@HDF5_PACKAGE@@HDF_PACKAGE_EXT@")
-
-###############################################################################################################
-# For any comments please contact cdashhelp@hdfgroup.org
-#
-###############################################################################################################
-
-if(WIN32)
-  include(${CTEST_SCRIPT_DIRECTORY}\\HDF5_Examples_options.cmake)
-  include(${CTEST_SCRIPT_DIRECTORY}\\CTestScript.cmake)
-else()
-  include(${CTEST_SCRIPT_DIRECTORY}/HDF5_Examples_options.cmake)
-  include(${CTEST_SCRIPT_DIRECTORY}/CTestScript.cmake)
-endif()

config/cmake/HDF5Macros.cmake

@@ -15,6 +15,8 @@ macro (H5_SET_LIB_OPTIONS libtarget libname libtype libpackage)
   # SOVERSION passed in ARGN when shared
   if (${libtype} MATCHES "SHARED")
     set (PACKAGE_SOVERSION ${HDF5_${libpackage}_PACKAGE_SOVERSION})
+    set (PACKAGE_COMPATIBILITY ${H5_${libpackage}_SOVERS_INTERFACE}.0.0)
+    set (PACKAGE_CURRENT ${H5_${libpackage}_SOVERS_INTERFACE}.${H5_${libpackage}_SOVERS_MINOR}.0)
     if (WIN32)
       set (LIBHDF_VERSION ${HDF5_PACKAGE_VERSION_MAJOR})
     else ()
@@ -26,6 +28,11 @@ macro (H5_SET_LIB_OPTIONS libtarget libname libtype libpackage)
     else ()
         set_target_properties (${libtarget} PROPERTIES SOVERSION ${LIBHDF_VERSION})
     endif ()
+    if (CMAKE_C_OSX_CURRENT_VERSION_FLAG)
+      set_property(TARGET ${libtarget} APPEND PROPERTY
+          LINK_FLAGS "${CMAKE_C_OSX_CURRENT_VERSION_FLAG}${PACKAGE_CURRENT} ${CMAKE_C_OSX_COMPATIBILITY_VERSION_FLAG}${PACKAGE_COMPATIBILITY}"
+      )
+    endif ()
   endif ()
   HDF_SET_LIB_OPTIONS (${libtarget} ${LIB_OUT_NAME} ${libtype})
 
@@ -33,9 +40,6 @@ macro (H5_SET_LIB_OPTIONS libtarget libname libtype libpackage)
   if (APPLE)
     option (HDF5_BUILD_WITH_INSTALL_NAME "Build with library install_name set to the installation path" OFF)
     if (HDF5_BUILD_WITH_INSTALL_NAME)
-      set_property(TARGET ${libtarget} APPEND PROPERTY
-          LINK_FLAGS "-current_version ${HDF5_PACKAGE_VERSION} -compatibility_version ${HDF5_PACKAGE_VERSION}"
-      )
       set_target_properties (${libtarget} PROPERTIES
           INSTALL_NAME_DIR "${CMAKE_INSTALL_PREFIX}/lib"
           BUILD_WITH_INSTALL_RPATH ${HDF5_BUILD_WITH_INSTALL_NAME}

config/cmake/HDF5UseFortran.cmake

@@ -18,82 +18,56 @@ ENABLE_LANGUAGE (Fortran)
 set (HDF_PREFIX "H5")
 include (CheckFortranFunctionExists)
 
-## Check for non-standard extenstion quadmath.h
-
-CHECK_INCLUDE_FILES(quadmath.h C_HAVE_QUADMATH)
-
-if (${C_HAVE_QUADMATH})
-  set(${HDF_PREFIX}_HAVE_QUADMATH 1)
-else ()
-  set(${HDF_PREFIX}_HAVE_QUADMATH 0)
-endif ()
-
 # The provided CMake Fortran macros don't provide a general compile/run function
 # so this one is used.
 #-----------------------------------------------------------------------------
-macro (FORTRAN_RUN FUNCTION CODE RUN_RESULT_VAR1 COMPILE_RESULT_VAR RETURN)
-#
-#  if (NOT DEFINED ${RUN_RESULT_VAR})
-    message (STATUS "Detecting Fortran ${FUNCTION}")
-    if (CMAKE_REQUIRED_LIBRARIES)
-      set (CHECK_FUNCTION_EXISTS_ADD_LIBRARIES
-          "-DLINK_LIBRARIES:STRING=${CMAKE_REQUIRED_LIBRARIES}")
-    else ()
-      set (CHECK_FUNCTION_EXISTS_ADD_LIBRARIES)
-    endif ()
+macro (FORTRAN_RUN FUNCTION_NAME SOURCE_CODE RUN_RESULT_VAR1 COMPILE_RESULT_VAR1 RETURN_VAR)
+    message (STATUS "Detecting Fortran ${FUNCTION_NAME}")
     file (WRITE
         ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/CMakeTmp/testFortranCompiler1.f90
-        "${CODE}"
+        "${SOURCE_CODE}"
     )
     TRY_RUN (RUN_RESULT_VAR COMPILE_RESULT_VAR
         ${CMAKE_BINARY_DIR}
         ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/CMakeTmp/testFortranCompiler1.f90
-        CMAKE_FLAGS "${CHECK_FUNCTION_EXISTS_ADD_LIBRARIES}"
-        RUN_OUTPUT_VARIABLE OUTPUT
+        LINK_LIBRARIES "${HDF5_REQUIRED_LIBRARIES}"
     )
 
-    set(${RETURN} ${OUTPUT})
-
-    #message ( "Test result1 ${RETURN} ")
-    #message ( "Test result3 ${RESULT} ")
-    #message ( "Test result2 ${CMAKE_MATCH_0} ")
-    #message ( "Test result4 ${CMAKE_MATCH_1} ")
-    #message ( "* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * ")
-    #message ( "Test result2 ${COMPILE_RESULT_VAR} ")
-    #message ( "* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * ")
-    #message ( "Test result1 ${RUN_RESULT_VAR} ")
-    #message ( "* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * ")
-
     if (${COMPILE_RESULT_VAR})
+      set(${RETURN_VAR} ${RUN_RESULT_VAR})
       if (${RUN_RESULT_VAR} MATCHES 0)
-        message (STATUS "Testing Fortran ${FUNCTION} - OK")
+        message (STATUS "Testing Fortran ${FUNCTION_NAME} - OK")
         file (APPEND ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/CMakeOutput.log
-          "Determining if the Fortran ${FUNCTION} exists passed with the following output:\n"
-          "${OUTPUT}\n\n"
+            "Determining if the Fortran ${FUNCTION_NAME} exists passed\n"
         )
       else ()
-        message (STATUS "Testing Fortran ${FUNCTION} - Fail")
+        message (STATUS "Testing Fortran ${FUNCTION_NAME} - Fail")
         file (APPEND ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/CMakeError.log
-          "Determining if the Fortran ${FUNCTION} exists failed with the following output:\n"
-          "${OUTPUT}\n\n")
+            "Determining if the Fortran ${FUNCTION_NAME} exists failed: ${RUN_RESULT_VAR}\n"
+        )
       endif ()
+    else ()
+        message (STATUS "Compiling Fortran ${FUNCTION_NAME} - Fail")
+        file (APPEND ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/CMakeError.log
+            "Determining if the Fortran ${FUNCTION_NAME} compiles failed: ${COMPILE_RESULT_VAR}\n"
+        )
+        set(${RETURN_VAR} ${COMPILE_RESULT_VAR})
     endif ()
-#  endif ()
 endmacro ()
 
 # Read source line beginning at the line matching Input:"START" and ending at the line matching Input:"END"
-macro (READ_SOURCE START END RETURN)
-  file (READ "${HDF5_SOURCE_DIR}/m4/aclocal_fc.f90" CODE)
-  string (REGEX MATCH "${START}[\\\t\\\n\\\r[].+]*${END}" CODE ${CODE})
-  set (RETURN "${CODE}")
+macro (READ_SOURCE SOURCE_START SOURCE_END RETURN_VAR)
+  file (READ "${HDF5_SOURCE_DIR}/m4/aclocal_fc.f90" SOURCE_MASTER)
+  string (REGEX MATCH "${SOURCE_START}[\\\t\\\n\\\r[].+]*${SOURCE_END}" SOURCE_CODE ${SOURCE_MASTER})
+  set (RETURN_VAR "${SOURCE_CODE}")
 endmacro ()
 
 #-----------------------------------------------------------------------------
 #  Check to see C_LONG_DOUBLE is available
 
-READ_SOURCE("PROGRAM PROG_FC_HAVE_C_LONG_DOUBLE" "END PROGRAM PROG_FC_HAVE_C_LONG_DOUBLE" CODE)
+READ_SOURCE("PROGRAM PROG_FC_HAVE_C_LONG_DOUBLE" "END PROGRAM PROG_FC_HAVE_C_LONG_DOUBLE" SOURCE_CODE)
 CHECK_FORTRAN_FEATURE(c_long_double
-  "${CODE}"
+  "${SOURCE_CODE}"
   FORTRAN_HAVE_C_LONG_DOUBLE
 )
 
@@ -105,9 +79,9 @@ endif ()
 
 # Check to see C_LONG_DOUBLE is different from C_DOUBLE
 
-READ_SOURCE("MODULE type_mod" "END PROGRAM PROG_FC_C_LONG_DOUBLE_EQ_C_DOUBLE" CODE)
+READ_SOURCE("MODULE type_mod" "END PROGRAM PROG_FC_C_LONG_DOUBLE_EQ_C_DOUBLE" SOURCE_CODE)
 CHECK_FORTRAN_FEATURE(c_long_double
-  "${CODE}"
+  "${SOURCE_CODE}"
   FORTRAN_C_LONG_DOUBLE_IS_UNIQUE
 )
 if (${FORTRAN_C_LONG_DOUBLE_IS_UNIQUE})
@@ -133,12 +107,12 @@ endif ()
 # Determine the available KINDs for REALs and INTEGERs
 #-----------------------------------------------------------------------------
 
-READ_SOURCE ("PROGRAM FC_AVAIL_KINDS" "END PROGRAM FC_AVAIL_KINDS" CODE)
+READ_SOURCE ("PROGRAM FC_AVAIL_KINDS" "END PROGRAM FC_AVAIL_KINDS" SOURCE_CODE)
 FORTRAN_RUN ("REAL and INTEGER KINDs"
-  "${CODE}"
-  XX
-  YY
-  PROG_OUTPUT
+    "${SOURCE_CODE}"
+    XX
+    YY
+    PROG_RESULT
 )
 # dnl The output from the above program will be:
 # dnl    -- LINE 1 --  valid integer kinds (comma seperated list)
@@ -197,15 +171,18 @@ foreach (KIND ${VAR} )
         USE ISO_C_BINDING
         IMPLICIT NONE
         INTEGER (KIND=${KIND}) a
-        WRITE(*,'(I0)') ${FC_SIZEOF_A}
+        OPEN(8,FILE='pac_validIntKinds.out',FORM='formatted')
+        WRITE(8,'(I0)') ${FC_SIZEOF_A}
+        CLOSE(8)
         END
      "
   )
   FORTRAN_RUN("INTEGER KIND SIZEOF" ${PROG_SRC}
-  XX
-  YY
-  PROG_OUTPUT1
+      XX
+      YY
+      PROG_RESULT1
   )
+  file (READ "${CMAKE_BINARY_DIR}/pac_validIntKinds.out" PROG_OUTPUT1)
   string (REGEX REPLACE "\n" "" PROG_OUTPUT1 "${PROG_OUTPUT1}")
   set (pack_int_sizeof "${pack_int_sizeof} ${PROG_OUTPUT1},")
 endforeach ()
@@ -241,20 +218,23 @@ foreach (KIND ${VAR} )
         USE ISO_C_BINDING
         IMPLICIT NONE
         REAL (KIND=${KIND}) a
-        WRITE(*,'(I0)') ${FC_SIZEOF_A}
+        OPEN(8,FILE='pac_validRealKinds.out',FORM='formatted')
+        WRITE(8,'(I0)') ${FC_SIZEOF_A}
+        CLOSE(8)
         END
      "
   )
   FORTRAN_RUN ("REAL KIND SIZEOF" ${PROG_SRC}
-  XX
-  YY
-  PROG_OUTPUT1
+      XX
+      YY
+      PROG_RESULT1
   )
+  file (READ "${CMAKE_BINARY_DIR}/pac_validRealKinds.out" PROG_OUTPUT1)
   string (REGEX REPLACE "\n" "" PROG_OUTPUT1 "${PROG_OUTPUT1}")
   set (pack_real_sizeof "${pack_real_sizeof} ${PROG_OUTPUT1},")
 endforeach ()
 
-if (pack_int_sizeof STREQUAL "")
+if (pack_real_sizeof STREQUAL "")
    message (FATAL_ERROR "Failed to find available REAL KINDs for Fortran")
 endif ()
 
@@ -288,18 +268,21 @@ FORTRAN_RUN ("SIZEOF NATIVE KINDs"
           INTEGER a
           REAL b
           DOUBLE PRECISION c
-          WRITE(*,*) ${FC_SIZEOF_A}
-    WRITE(*,*) kind(a)
-    WRITE(*,*) ${FC_SIZEOF_B}
-    WRITE(*,*) kind(b)
-          WRITE(*,*) ${FC_SIZEOF_C}
-          WRITE(*,*) kind(c)
+          OPEN(8,FILE='pac_sizeof_native_kinds.out',FORM='formatted')
+          WRITE(8,*) ${FC_SIZEOF_A}
+          WRITE(8,*) kind(a)
+          WRITE(8,*) ${FC_SIZEOF_B}
+          WRITE(8,*) kind(b)
+          WRITE(8,*) ${FC_SIZEOF_C}
+          WRITE(8,*) kind(c)
+          CLOSE(8)
        END
   "
-  XX
-  YY
-  PROG_OUTPUT
-)
+      XX
+      YY
+      PROG_RESULT
+  )
+  file (READ "${CMAKE_BINARY_DIR}/pac_sizeof_native_kinds.out" PROG_OUTPUT)
 # dnl The output from the above program will be:
 # dnl    -- LINE 1 --  sizeof INTEGER
 # dnl    -- LINE 2 --  kind of INTEGER
@@ -341,8 +324,8 @@ endif ()
 set (${HDF_PREFIX}_FORTRAN_SIZEOF_LONG_DOUBLE ${${HDF_PREFIX}_SIZEOF_LONG_DOUBLE})
 
 # remove the invalid kind from the list
-if (NOT(${SIZEOF___FLOAT128} EQUAL 0))
-   if (NOT(${SIZEOF___FLOAT128} EQUAL ${max_real_fortran_sizeof})
+if (NOT(${${HDF_PREFIX}_SIZEOF___FLOAT128} EQUAL 0))
+   if (NOT(${${HDF_PREFIX}_SIZEOF___FLOAT128} EQUAL ${max_real_fortran_sizeof})
        AND NOT(${${HDF_PREFIX}_FORTRAN_SIZEOF_LONG_DOUBLE} EQUAL ${max_real_fortran_sizeof})
        # account for the fact that the C compiler can have 16-byte __float128 and the fortran compiler only has 8-byte doubles,
        # so we don't want to remove the 8-byte fortran doubles.
@@ -372,26 +355,26 @@ ENABLE_LANGUAGE (C)
 # The provided CMake C macros don't provide a general compile/run function
 # so this one is used.
 #-----------------------------------------------------------------------------
-macro (C_RUN FUNCTION CODE RETURN)
-    message (STATUS "Detecting C ${FUNCTION}")
-    if (CMAKE_REQUIRED_LIBRARIES)
+macro (C_RUN FUNCTION_NAME SOURCE_CODE RETURN_VAR)
+    message (STATUS "Detecting C ${FUNCTION_NAME}")
+    if (HDF5_REQUIRED_LIBRARIES)
       set (CHECK_FUNCTION_EXISTS_ADD_LIBRARIES
-          "-DLINK_LIBRARIES:STRING=${CMAKE_REQUIRED_LIBRARIES}")
+          "-DLINK_LIBRARIES:STRING=${HDF5_REQUIRED_LIBRARIES}")
     else ()
       set (CHECK_FUNCTION_EXISTS_ADD_LIBRARIES)
     endif ()
     file (WRITE
         ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/CMakeTmp/testCCompiler1.c
-        ${CODE}
+        ${SOURCE_CODE}
     )
     TRY_RUN (RUN_RESULT_VAR COMPILE_RESULT_VAR
         ${CMAKE_BINARY_DIR}
         ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/CMakeTmp/testCCompiler1.c
         CMAKE_FLAGS "${CHECK_FUNCTION_EXISTS_ADD_LIBRARIES}"
-        RUN_OUTPUT_VARIABLE OUTPUT
+        RUN_OUTPUT_VARIABLE OUTPUT_VAR
     )
 
-    set (${RETURN} ${OUTPUT})
+    set (${RETURN_VAR} ${OUTPUT_VAR})
 
     #message ( "* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * ")
     #message ( "Test COMPILE_RESULT_VAR ${COMPILE_RESULT_VAR} ")
@@ -401,21 +384,21 @@ macro (C_RUN FUNCTION CODE RETURN)
 
     if (${COMPILE_RESULT_VAR})
       if (${RUN_RESULT_VAR} MATCHES 1)
-        set (${RUN_RESULT_VAR} 1 CACHE INTERNAL "Have C function ${FUNCTION}")
-        message (STATUS "Testing C ${FUNCTION} - OK")
+        set (${RUN_RESULT_VAR} 1 CACHE INTERNAL "Have C function ${FUNCTION_NAME}")
+        message (STATUS "Testing C ${FUNCTION_NAME} - OK")
         file (APPEND ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/CMakeOutput.log
-            "Determining if the C ${FUNCTION} exists passed with the following output:\n"
-            "${OUTPUT}\n\n"
+            "Determining if the C ${FUNCTION_NAME} exists passed with the following output:\n"
+            "${OUTPUT_VAR}\n\n"
         )
       else ()
-        message (STATUS "Testing C ${FUNCTION} - Fail")
-        set (${RUN_RESULT_VAR} 0 CACHE INTERNAL "Have C function ${FUNCTION}")
+        message (STATUS "Testing C ${FUNCTION_NAME} - Fail")
+        set (${RUN_RESULT_VAR} 0 CACHE INTERNAL "Have C function ${FUNCTION_NAME}")
         file (APPEND ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/CMakeError.log
-            "Determining if the C ${FUNCTION} exists failed with the following output:\n"
-            "${OUTPUT}\n\n")
+            "Determining if the C ${FUNCTION_NAME} exists failed with the following output:\n"
+            "${OUTPUT_VAR}\n\n")
       endif ()
     else ()
-        message (FATAL_ERROR "Compilation of C ${FUNCTION} - Failed")
+        message (FATAL_ERROR "Compilation of C ${FUNCTION_NAME} - Failed")
     endif ()
 endmacro ()
 
@@ -423,9 +406,9 @@ set (PROG_SRC
     "
 #include <float.h>
 #include <stdio.h>
-#define CHECK_FLOAT128 ${SIZEOF___FLOAT128}
+#define CHECK_FLOAT128 ${${HDF_PREFIX}_SIZEOF___FLOAT128}
 #if CHECK_FLOAT128!=0
-# if ${${HDF_PREFIX}_HAVE_QUADMATH}!=0
+# if ${${HDF_PREFIX}_HAVE_QUADMATH_H}!=0
 #include <quadmath.h>
 # endif
 # ifdef FLT128_DIG
@@ -460,9 +443,9 @@ string (REGEX REPLACE "\n" ";" PROG_OUTPUT "${PROG_OUTPUT}")
 list (GET PROG_OUTPUT 0 LDBL_DIG)
 list (GET PROG_OUTPUT 1 FLT128_DIG)
 
-if (SIZEOF___FLOAT128 EQUAL 0 OR FLT128_DIG EQUAL 0)
+if (${HDF_PREFIX}_SIZEOF___FLOAT128 EQUAL 0 OR FLT128_DIG EQUAL 0)
   set (${HDF_PREFIX}_HAVE_FLOAT128 0)
-  set (SIZEOF___FLOAT128 0)
+  set (${HDF_PREFIX}_SIZEOF___FLOAT128 0)
   set (${HDF_PREFIX}_PAC_C_MAX_REAL_PRECISION ${LDBL_DIG})
 else ()
   set(${HDF_PREFIX}_PAC_C_MAX_REAL_PRECISION ${FLT128_DIG})

config/cmake/HDF5_Examples.cmake.in

@@ -48,7 +48,11 @@ set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DCTEST_CONFIGURATION_TYPE:STRING=${
 ##################################################################
 
 if(NOT DEFINED INSTALLDIR)
-  set(INSTALLDIR "@CMAKE_INSTALL_PREFIX@")
+  if(WIN32)
+    set(INSTALLDIR "C:/Program Files/HDF_Group/@HDF5_PACKAGE_NAME@/@HDF5_PACKAGE_VERSION@")
+  else()
+    set(INSTALLDIR "@CMAKE_INSTALL_PREFIX@")
+  endif()
 endif()
 
 if(NOT DEFINED CTEST_SOURCE_NAME)
@@ -70,7 +74,7 @@ set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DSITE:STRING=${CTEST_SITE} -DBUILDN
 
 #TAR_SOURCE - name of tarfile
 #if(NOT DEFINED TAR_SOURCE)
-#  set(CTEST_USE_TAR_SOURCE "HDF5Examples-1.10.5-Source")
+#  set(CTEST_USE_TAR_SOURCE "HDF5Examples-1.12.4-Source")
 #endif()
 
 ###############################################################################################################

config/cmake/HDFCompilerFlags.cmake

@@ -9,20 +9,22 @@
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #
+set(CMAKE_C_STANDARD 99)
+set(CMAKE_C_STANDARD_REQUIRED TRUE)
+
+message (STATUS "Warnings Configuration:")
+set (CMAKE_C_FLAGS "${CMAKE_C99_STANDARD_COMPILE_OPTION} ${CMAKE_C_FLAGS}")
 #-----------------------------------------------------------------------------
 # Compiler specific flags : Shouldn't there be compiler tests for these
 #-----------------------------------------------------------------------------
 if (CMAKE_COMPILER_IS_GNUCC)
   set (CMAKE_C_FLAGS "${CMAKE_ANSI_CFLAGS} ${CMAKE_C_FLAGS}")
-  if (NOT CYGWIN)
-    set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -std=c99")
-  endif ()
   if (${HDF_CFG_NAME} MATCHES "Debug")
     if (NOT CMAKE_C_COMPILER_VERSION VERSION_LESS 5.0)
       set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -Og -ftrapv -fno-common")
     endif ()
   else ()
-    if (NOT CMAKE_C_COMPILER_VERSION VERSION_LESS 5.0)
+    if (CMAKE_C_COMPILER_ID STREQUAL "GNU" AND NOT CMAKE_C_COMPILER_VERSION VERSION_LESS 5.0)
       set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -fstdarg-opt")
     endif ()
   endif ()
@@ -34,7 +36,7 @@ if (CMAKE_COMPILER_IS_GNUCXX AND CMAKE_CXX_COMPILER_LOADED)
       set (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -Og -ftrapv -fno-common")
     endif ()
   else ()
-    if (NOT CMAKE_CXX_COMPILER_VERSION VERSION_LESS 5.0)
+    if (CMAKE_CXX_COMPILER_ID STREQUAL "GNU" AND NOT CMAKE_CXX_COMPILER_VERSION VERSION_LESS 5.0)
       set (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -fstdarg-opt")
     endif ()
   endif ()
@@ -45,6 +47,7 @@ endif ()
 #-----------------------------------------------------------------------------
 option (HDF5_DISABLE_COMPILER_WARNINGS "Disable compiler warnings" OFF)
 if (HDF5_DISABLE_COMPILER_WARNINGS)
+  message (STATUS "....Compiler warnings are suppressed")
   # MSVC uses /w to suppress warnings.  It also complains if another
   # warning level is given, so remove it.
   if (MSVC)
@@ -79,83 +82,80 @@ endif ()
 # break into groups (from the config/gnu-flags file)
 #-----------------------------------------------------------------------------
 if (NOT MSVC AND CMAKE_COMPILER_IS_GNUCC)
-  if (NOT ${CMAKE_SYSTEM_NAME} MATCHES "SunOS")
-    set (CMAKE_C_FLAGS_5 "${CMAKE_C_FLAGS_5} -Wcast-qual")
-    set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs")
-  else ()
+  if (${CMAKE_SYSTEM_NAME} MATCHES "SunOS")
     set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -erroff=%none -DBSD_COMP")
+  else ()
+    # General flags
+    #
+    # Note that some of the flags listed here really should be developer
+    # flags (listed in a separate variable, below) but we put them here
+    # because they are not raised by the current code and we'd like to
+    # know if they do start showing up.
+    #
+    # NOTE: Don't add -Wpadded here since we can't/won't fix the (many)
+    # warnings that are emitted. If you need it, add it at configure time.
+    if (CMAKE_C_COMPILER_ID STREQUAL "Intel")
+      set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -Wcheck -Wall")
+      set (H5_CFLAGS0 "${H5_CFLAGS0} -Wcomment -Wdeprecated -Wmain -Wmissing-declarations -Wmissing-prototypes -Wp64 -Wpointer-arith")
+      set (H5_CFLAGS0 "${H5_CFLAGS0} -Wreturn-type -Wstrict-prototypes -Wuninitialized")
+      set (H5_CFLAGS0 "${H5_CFLAGS0} -Wunknown-pragmas -Wunused-function -Wunused-variable")
+      # this is just a failsafe
+      set (H5_CFLAGS0 "${H5_CFLAGS0} -finline-functions")
+      if(NOT CMAKE_C_COMPILER_VERSION VERSION_LESS 18.0)
+        set (H5_CFLAGS0 "${H5_CFLAGS0} -Wextra-tokens -Wformat -Wformat-security -Wic-pointer -Wshadow")
+        set (H5_CFLAGS0 "${H5_CFLAGS0} -Wsign-compare -Wtrigraphs -Wwrite-strings")
+      endif()
+    elseif (CMAKE_C_COMPILER_ID STREQUAL "GNU")
+      set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -pedantic -Wall -Wextra")
+      set (H5_CFLAGS0 "${H5_CFLAGS0} -Wbad-function-cast -Wc++-compat -Wcast-align")
+      set (H5_CFLAGS0 "${H5_CFLAGS0} -Wcast-qual -Wconversion -Wdeclaration-after-statement -Wdisabled-optimization -Wfloat-equal")
+      set (H5_CFLAGS0 "${H5_CFLAGS0} -Wformat=2 -Winit-self -Winvalid-pch -Wmissing-declarations -Wmissing-include-dirs")
+      set (H5_CFLAGS0 "${H5_CFLAGS0} -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wpacked -Wpointer-arith")
+      set (H5_CFLAGS0 "${H5_CFLAGS0} -Wredundant-decls -Wshadow -Wstrict-prototypes -Wswitch-default -Wswitch-enum")
+      set (H5_CFLAGS0 "${H5_CFLAGS0} -Wundef -Wunused-macros -Wunsafe-loop-optimizations -Wwrite-strings")
+      # gcc automatically inlines based on the optimization level
+      # this is just a failsafe
+      set (H5_CFLAGS0 "${H5_CFLAGS0} -finline-functions")
+    endif ()
   endif ()
 
     #-----------------------------------------------------------------------------
     # Option to allow the user to enable developer warnings
+    # Developer warnings (suggestions from gcc, not code problems)
     #-----------------------------------------------------------------------------
     option (HDF5_ENABLE_DEV_WARNINGS "Enable HDF5 developer group warnings" OFF)
     if (HDF5_ENABLE_DEV_WARNINGS)
-      set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -Winline -Waggregate-return")
+      message (STATUS "....HDF5 developer group warnings are enabled")
+      if (CMAKE_C_COMPILER_ID STREQUAL "Intel")
+        set (H5_CFLAGS0 "${H5_CFLAGS0} -Winline -Wreorder -Wport -Wstrict-aliasing")
+      elseif (CMAKE_C_COMPILER_ID STREQUAL "GNU")
+        set (H5_CFLAGS0 "${H5_CFLAGS0} -Winline -Waggregate-return -Wmissing-format-attribute -Wmissing-noreturn")
+      endif ()
     else ()
-      set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -Wno-unused-parameter -Wno-inline -Wno-aggregate-return")
+      if (CMAKE_C_COMPILER_ID STREQUAL "GNU")
+        set (H5_CFLAGS0 "${H5_CFLAGS0} -Wno-inline -Wno-aggregate-return -Wno-missing-format-attribute -Wno-missing-noreturn")
+      endif ()
     endif ()
 
-    # Append warning flags
-    # Don't use the '-Wtraditional' flag, we're way past having K&R C code
-    # set (H5_CFLAGS "${H5_CFLAGS} -Wtraditional")
-    # Don't use the '-Wtraditional-conversion' flag, there's too many warnings
-    #  from GCC's assert macro
-    # set (H5_CFLAGS "${H5_CFLAGS} -Wtraditional-conversion")
 
-    # Append warning flags from gcc-3* case
-    # (don't use -Wpadded flag for normal builds, many of the warnings its
-    #   issuing can't be fixed and they are making it hard to detect other,
-    #   more important warnings)
-    #set (H5_CFLAGS "${H5_CFLAGS} -Wfloat-equal -Wmissing-format-attribute -Wpadded")
-    set (H5_CFLAGS1 "${H5_CFLAGS1} -Wfloat-equal -Wmissing-format-attribute")
+    if (CMAKE_C_COMPILER_ID STREQUAL "GNU")
+      # Append warning flags that only gcc 4.3+ knows about
+      #
+      # Technically, variable-length arrays are part of the C99 standard, but
+      #   we should approach them a bit cautiously... -QAK
+      set (H5_CFLAGS1 "${H5_CFLAGS1} -Wlogical-op -Wlarger-than=2048 -Wvla")
 
-    # Append warning flags from gcc-3.2* case
-    set (H5_CFLAGS1 "${H5_CFLAGS1} -Wpacked -Wdisabled-optimization")
-    if (HDF5_ENABLE_DEV_WARNINGS)
-      set (H5_CFLAGS1 "${H5_CFLAGS1} -Wmissing-noreturn")
-    else ()
-      set (H5_CFLAGS1 "${H5_CFLAGS1} -Wno-missing-noreturn")
+      # Append more extra warning flags that only gcc 4.4+ know about
+      set (H5_CFLAGS1 "${H5_CFLAGS1} -Wsync-nand -Wframe-larger-than=16384 -Wpacked-bitfield-compat")
     endif ()
 
-    # Enable more format checking flags, beyond the basic -Wformat included
-    # in -Wall
-    set (H5_CFLAGS1_5 "${H5_CFLAGS1_5} -Wformat=2")
-
-    # Append warning flags from gcc-3.3* case
-    set (H5_CFLAGS1 "${H5_CFLAGS1} -Wendif-labels")
-
-    # Append warning flags from gcc-3.4* case
-    set (H5_CFLAGS1 "${H5_CFLAGS1} -Wdeclaration-after-statement -Wold-style-definition -Winvalid-pch")
-
-    # Append more extra warning flags that only gcc4.0+ know about
-    set (H5_CFLAGS2 "${H5_CFLAGS2} -Wvariadic-macros -Winit-self -Wmissing-include-dirs -Wswitch-default -Wswitch-enum -Wunused-macros")
-
-    # Append more extra warning flags that only gcc 4.1+ know about
-    set (H5_CFLAGS2_5 "${H5_CFLAGS2_5} -Wunsafe-loop-optimizations")
-    set (H5_CFLAGS2 "${H5_CFLAGS2} -Wc++-compat")
-
-    # Append more extra warning flags that only gcc 4.2+ know about
-    set (H5_CFLAGS2_5 "${H5_CFLAGS2_5} -Wstrict-overflow")
-    set (H5_CFLAGS2 "${H5_CFLAGS2} -Wno-strict-overflow")
-
-    # Append more extra warning flags that only gcc 4.3+ know about
-    #
-    # Technically, variable-length arrays are part of the C99 standard, but
-    #   we should approach them a bit cautiously... -QAK
-    set (H5_CFLAGS2 "${H5_CFLAGS2} -Wlogical-op -Wlarger-than=2048 -Wvla")
-
-    # Append more extra warning flags that only gcc 4.4+ know about
-    set (H5_CFLAGS2 "${H5_CFLAGS2} -Wsync-nand -Wframe-larger-than=16384 -Wpacked-bitfield-compat")
-
     # Append more extra warning flags that only gcc 4.5+ know about
-    if (NOT CMAKE_C_COMPILER_VERSION VERSION_LESS 4.5)
-      set (H5_CFLAGS2_5 "${H5_CFLAGS2_5} -Wstrict-overflow=5 -Wjump-misses-init -Wunsuffixed-float-constants")
-      set (H5_CFLAGS2 "${H5_CFLAGS2} -Wjump-misses-init -Wunsuffixed-float-constants")
+    if (CMAKE_C_COMPILER_ID STREQUAL "GNU" AND NOT CMAKE_C_COMPILER_VERSION VERSION_LESS 4.5)
+      set (H5_CFLAGS1 "${H5_CFLAGS1} -Wstrict-overflow=5 -Wjump-misses-init -Wunsuffixed-float-constants")
     endif ()
 
     # Append more extra warning flags that only gcc 4.6+ know about
-    if (NOT CMAKE_C_COMPILER_VERSION VERSION_LESS 4.6)
+    if (CMAKE_C_COMPILER_ID STREQUAL "GNU" AND NOT CMAKE_C_COMPILER_VERSION VERSION_LESS 4.6)
       set (H5_CFLAGS2 "${H5_CFLAGS2} -Wdouble-promotion -Wtrampolines")
       if (HDF5_ENABLE_DEV_WARNINGS)
         set (H5_CFLAGS2 "${H5_CFLAGS2} -Wsuggest-attribute=const")
@@ -164,14 +164,8 @@ if (NOT MSVC AND CMAKE_COMPILER_IS_GNUCC)
       endif ()
     endif ()
 
-    # The "unreachable code" warning appears to be reliable now...
-    # (this warning was removed in gcc 4.5+)
-    if (NOT CMAKE_C_COMPILER_VERSION VERSION_LESS 4.7)
-      set (H5_CFLAGS2 "${H5_CFLAGS2} -Wunreachable-code")
-    endif ()
-
     # Append more extra warning flags that only gcc 4.7+ know about
-    if (NOT CMAKE_C_COMPILER_VERSION VERSION_LESS 4.7)
+    if (CMAKE_C_COMPILER_ID STREQUAL "GNU" AND NOT CMAKE_C_COMPILER_VERSION VERSION_LESS 4.7)
       set (H5_CFLAGS2 "${H5_CFLAGS2} -Wstack-usage=8192 -Wvector-operation-performance")
       if (HDF5_ENABLE_DEV_WARNINGS)
         set (H5_CFLAGS2 "${H5_CFLAGS2} -Wsuggest-attribute=pure -Wsuggest-attribute=noreturn")
@@ -181,7 +175,7 @@ if (NOT MSVC AND CMAKE_COMPILER_IS_GNUCC)
     endif ()
 
     # Append more extra warning flags that only gcc 4.8+ know about
-    if (NOT CMAKE_C_COMPILER_VERSION VERSION_LESS 4.8)
+    if (CMAKE_C_COMPILER_ID STREQUAL "GNU" AND NOT CMAKE_C_COMPILER_VERSION VERSION_LESS 4.8)
       if (HDF5_ENABLE_DEV_WARNINGS)
         set (H5_CFLAGS2 "${H5_CFLAGS2} -Wsuggest-attribute=format")
       else ()
@@ -190,19 +184,17 @@ if (NOT MSVC AND CMAKE_COMPILER_IS_GNUCC)
     endif ()
 
     # Append more extra warning flags that only gcc 4.9+ know about
-    if (NOT CMAKE_C_COMPILER_VERSION VERSION_LESS 4.9)
-      set (H5_CFLAGS2 "${H5_CFLAGS2} -Wdate-time -Wopenmp-simd")
+    if (CMAKE_C_COMPILER_ID STREQUAL "GNU" AND NOT CMAKE_C_COMPILER_VERSION VERSION_LESS 4.9)
+      set (H5_CFLAGS2 "${H5_CFLAGS2} -Wdate-time")
     endif ()
 
-    # (There was no release of gcc 5.0)
-
     # Append more extra warning flags that only gcc 5.1+ know about
-    if (NOT CMAKE_C_COMPILER_VERSION VERSION_LESS 5.1)
+    if (CMAKE_C_COMPILER_ID STREQUAL "GNU" AND NOT CMAKE_C_COMPILER_VERSION VERSION_LESS 5.1)
       set (H5_CFLAGS3 "${H5_CFLAGS3} -Warray-bounds=2 -Wc99-c11-compat")
     endif ()
 
     # Append more extra warning flags that only gcc 6.x+ know about
-    if (NOT CMAKE_C_COMPILER_VERSION VERSION_LESS 6.0)
+    if (CMAKE_C_COMPILER_ID STREQUAL "GNU" AND NOT CMAKE_C_COMPILER_VERSION VERSION_LESS 6.0)
       set (H5_CFLAGS4 "${H5_CFLAGS4} -Wnull-dereference -Wunused-const-variable -Wduplicated-cond -Whsa")
     endif ()
 
@@ -213,6 +205,7 @@ endif ()
 #-----------------------------------------------------------------------------
 option (HDF5_ENABLE_ALL_WARNINGS "Enable all warnings" OFF)
 if (HDF5_ENABLE_ALL_WARNINGS)
+  message (STATUS "....All Warnings are enabled")
   if (MSVC)
     if (HDF5_ENABLE_DEV_WARNINGS)
       string (REGEX REPLACE "(^| )([/-])W[0-9]( |$)" " " CMAKE_C_FLAGS "${CMAKE_C_FLAGS}")
@@ -231,7 +224,7 @@ if (HDF5_ENABLE_ALL_WARNINGS)
     endif ()
   else ()
     if (CMAKE_COMPILER_IS_GNUCC)
-      set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -Wall -Wextra -pedantic ${H5_CFLAGS1} ${H5_CFLAGS2}")
+      set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} ${H5_CFLAGS0} ${H5_CFLAGS1} ${H5_CFLAGS2}")
     endif ()
   endif ()
 endif ()
@@ -241,6 +234,7 @@ endif ()
 #-----------------------------------------------------------------------------
 option (HDF5_ENABLE_GROUPZERO_WARNINGS "Enable group zero warnings" OFF)
 if (HDF5_ENABLE_GROUPZERO_WARNINGS)
+  message (STATUS "....Group Zero warnings are enabled")
   if (MSVC)
     string (REGEX REPLACE "(^| )([/-])W[0-9]( |$)" " " CMAKE_C_FLAGS "${CMAKE_C_FLAGS}")
     set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} /W1")
@@ -250,7 +244,7 @@ if (HDF5_ENABLE_GROUPZERO_WARNINGS)
     endif ()
   else ()
     if (CMAKE_COMPILER_IS_GNUCC)
-      set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -Wall -Wextra -pedantic")
+      set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} ${H5_CFLAGS0}")
     endif ()
   endif ()
 endif ()
@@ -260,6 +254,7 @@ endif ()
 #-----------------------------------------------------------------------------
 option (HDF5_ENABLE_GROUPONE_WARNINGS "Enable group one warnings" OFF)
 if (HDF5_ENABLE_GROUPONE_WARNINGS)
+  message (STATUS "....Group One warnings are enabled")
   if (MSVC)
     string (REGEX REPLACE "(^| )([/-])W[0-9]( |$)" " " CMAKE_C_FLAGS "${CMAKE_C_FLAGS}")
     set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} /W2")
@@ -277,6 +272,7 @@ endif ()
 #-----------------------------------------------------------------------------
 option (HDF5_ENABLE_GROUPTWO_WARNINGS "Enable group two warnings" OFF)
 if (HDF5_ENABLE_GROUPTWO_WARNINGS)
+  message (STATUS "....Group Two warnings are enabled")
   if (MSVC)
     string (REGEX REPLACE "(^| )([/-])W[0-9]( |$)" " " CMAKE_C_FLAGS "${CMAKE_C_FLAGS}")
     set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} /W3")
@@ -294,6 +290,7 @@ endif ()
 #-----------------------------------------------------------------------------
 option (HDF5_ENABLE_GROUPTHREE_WARNINGS "Enable group three warnings" OFF)
 if (HDF5_ENABLE_GROUPTHREE_WARNINGS)
+  message (STATUS "....Group Three warnings are enabled")
   if (MSVC)
     string (REGEX REPLACE "(^| )([/-])W[0-9]( |$)" " " CMAKE_C_FLAGS "${CMAKE_C_FLAGS}")
     set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} /W4")
@@ -311,6 +308,7 @@ endif ()
 #-----------------------------------------------------------------------------
 option (HDF5_ENABLE_GROUPFOUR_WARNINGS "Enable group four warnings" OFF)
 if (HDF5_ENABLE_GROUPFOUR_WARNINGS)
+  message (STATUS "....Group Four warnings are enabled")
   if (NOT MSVC)
     set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} ${H5_CFLAGS4}")
   endif ()

config/cmake/README.txt.cmake.in

@@ -34,9 +34,9 @@ utility should be installed.
 To test the installation with the examples;
     Create a directory to run the examples.
     Copy HDF5Examples folder to this directory.
+    Copy CTestScript.cmake to this directory.
     Copy HDF5_Examples.cmake to this directory.
     Copy HDF5_Examples_options.cmake to this directory.
-    Copy CTestScript.cmake to this directory.
     The default source folder is defined as "HDF5Examples". It can be changed
         with the CTEST_SOURCE_NAME script option.
     The default installation folder is defined as "@CMAKE_INSTALL_PREFIX@".

config/cmake/UserMacros/Windows_MT.cmake

@@ -14,7 +14,8 @@
 ########################################################
 
 # To use this option, copy both the macro and option code
-# into the root UserMacros.cmake file.
+# into the root UserMacros.cmake file. Then enable the option,
+# using the command line add "-DBUILD_STATIC_CRT_LIBS:BOOL=ON"
 # OR add an include to the root UserMacros.cmake file:
 # INCLUDE(path_to_file/WINDOWS_MT.cmake)
 

config/cmake/hdf5-config-version.cmake.in

@@ -21,38 +21,38 @@
 
 set (PACKAGE_VERSION "@HDF5_VERSION_STRING@")
 
-if("${PACKAGE_VERSION}" VERSION_LESS "${PACKAGE_FIND_VERSION}" )
+if(PACKAGE_VERSION VERSION_LESS PACKAGE_FIND_VERSION)
   set(PACKAGE_VERSION_COMPATIBLE FALSE)
-else ()
-  if ("${PACKAGE_FIND_VERSION_MAJOR}" STREQUAL "@H5_VERS_MAJOR@")
+else()
+  if("@H5_VERS_MAJOR@.@H5_VERS_MINOR@" MATCHES "^([0-9]+)\\.([0-9]+)")
+    set(CVF_VERSION_MAJOR "${CMAKE_MATCH_1}")
+    set(CVF_VERSION_MINOR "${CMAKE_MATCH_2}")
+  else()
+    set(CVF_VERSION_MAJOR "@HDF5_VERSION_STRING@")
+    set(CVF_VERSION_MINOR "")
+  endif()
 
-    # exact match for version @H5_VERS_MAJOR@.@H5_VERS_MINOR@
-    if ("${PACKAGE_FIND_VERSION_MINOR}" STREQUAL "@H5_VERS_MINOR@")
+  if((PACKAGE_FIND_VERSION_MAJOR STREQUAL CVF_VERSION_MAJOR) AND
+     (PACKAGE_FIND_VERSION_MINOR STREQUAL CVF_VERSION_MINOR))
+    set(PACKAGE_VERSION_COMPATIBLE TRUE)
+  else()
+    set(PACKAGE_VERSION_COMPATIBLE FALSE)
+  endif()
 
-      # compatible with any version @H5_VERS_MAJOR@.@H5_VERS_MINOR@.x
-      set (PACKAGE_VERSION_COMPATIBLE TRUE)
+  if(PACKAGE_FIND_VERSION STREQUAL PACKAGE_VERSION)
+      set(PACKAGE_VERSION_EXACT TRUE)
+  endif()
+endif()
 
-      if ("${PACKAGE_FIND_VERSION_PATCH}" STREQUAL "@H5_VERS_RELEASE@")
-        set (PACKAGE_VERSION_EXACT TRUE)
-
-        if ("${PACKAGE_FIND_VERSION_TWEAK}" STREQUAL "@H5_VERS_SUBRELEASE@")
-          # not using this yet
-        endif ()
-      endif ()
-    else ()
-      set (PACKAGE_VERSION_COMPATIBLE FALSE)
-    endif ()
-  endif ()
-endif ()
 
 # if the installed or the using project don't have CMAKE_SIZEOF_VOID_P set, ignore it:
-if("${CMAKE_SIZEOF_VOID_P}"  STREQUAL ""  OR "@CMAKE_SIZEOF_VOID_P@" STREQUAL "")
+if("${CMAKE_SIZEOF_VOID_P}" STREQUAL "" OR "@CMAKE_SIZEOF_VOID_P@" STREQUAL "")
    return()
-endif ()
+endif()
 
 # check that the installed version has the same 32/64bit-ness as the one which is currently searching:
-if(NOT "${CMAKE_SIZEOF_VOID_P}" STREQUAL "@CMAKE_SIZEOF_VOID_P@")
+if(NOT CMAKE_SIZEOF_VOID_P STREQUAL "@CMAKE_SIZEOF_VOID_P@")
   math(EXPR installedBits "@CMAKE_SIZEOF_VOID_P@ * 8")
   set(PACKAGE_VERSION "${PACKAGE_VERSION} (${installedBits}bit)")
   set(PACKAGE_VERSION_UNSUITABLE TRUE)
-endif ()
+endif()

config/cmake/hdf5-config.cmake.in

@@ -38,6 +38,7 @@ set (${HDF5_PACKAGE_NAME}_BUILD_CPP_LIB   @HDF5_BUILD_CPP_LIB@)
 set (${HDF5_PACKAGE_NAME}_BUILD_JAVA      @HDF5_BUILD_JAVA@)
 set (${HDF5_PACKAGE_NAME}_BUILD_TOOLS     @HDF5_BUILD_TOOLS@)
 set (${HDF5_PACKAGE_NAME}_BUILD_HL_LIB    @HDF5_BUILD_HL_LIB@)
+set (${HDF5_PACKAGE_NAME}_ENABLE_THREADSAFE @HDF5_ENABLE_THREADSAFE@)
 set (${HDF5_PACKAGE_NAME}_ENABLE_Z_LIB_SUPPORT @HDF5_ENABLE_Z_LIB_SUPPORT@)
 set (${HDF5_PACKAGE_NAME}_ENABLE_SZIP_SUPPORT  @HDF5_ENABLE_SZIP_SUPPORT@)
 set (${HDF5_PACKAGE_NAME}_ENABLE_SZIP_ENCODING @HDF5_ENABLE_SZIP_ENCODING@)
@@ -45,6 +46,8 @@ set (${HDF5_PACKAGE_NAME}_BUILD_SHARED_LIBS    @BUILD_SHARED_LIBS@)
 set (${HDF5_PACKAGE_NAME}_PACKAGE_EXTLIBS      @HDF5_PACKAGE_EXTLIBS@)
 set (${HDF5_PACKAGE_NAME}_EXPORT_LIBRARIES @HDF5_LIBRARIES_TO_EXPORT@)
 set (${HDF5_PACKAGE_NAME}_TOOLSET "@CMAKE_GENERATOR_TOOLSET@")
+set (${HDF5_PACKAGE_NAME}_DEFAULT_API_VERSION "@DEFAULT_API_VERSION@")
+set (${HDF5_PACKAGE_NAME}_PARALLEL_FILTERED_WRITES "@PARALLEL_FILTERED_WRITES@")
 
 #-----------------------------------------------------------------------------
 # Dependencies
@@ -124,14 +127,14 @@ endif ()
 # Handle requested components:
 list (REMOVE_DUPLICATES ${HDF5_PACKAGE_NAME}_FIND_COMPONENTS)
 foreach (comp IN LISTS ${HDF5_PACKAGE_NAME}_FIND_COMPONENTS)
-  if (${comp} STREQUAL "shared")
+  if (comp STREQUAL "shared")
     list (REMOVE_ITEM ${HDF5_PACKAGE_NAME}_FIND_COMPONENTS ${comp})
     set (${HDF5_PACKAGE_NAME}_LIB_TYPE ${${HDF5_PACKAGE_NAME}_LIB_TYPE} ${comp})
 
     if (${HDF5_PACKAGE_NAME}_BUILD_FORTRAN)
       set (${HDF5_PACKAGE_NAME}_INCLUDE_DIR_FORTRAN "@PACKAGE_INCLUDE_INSTALL_DIR@/shared")
     endif ()
-  elseif (${comp} STREQUAL "static")
+  elseif (comp STREQUAL "static")
     list (REMOVE_ITEM ${HDF5_PACKAGE_NAME}_FIND_COMPONENTS ${comp})
     set (${HDF5_PACKAGE_NAME}_LIB_TYPE ${${HDF5_PACKAGE_NAME}_LIB_TYPE} ${comp})
 
@@ -143,32 +146,32 @@ endforeach ()
 foreach (libtype IN LISTS ${HDF5_PACKAGE_NAME}_LIB_TYPE)
   foreach (comp IN LISTS ${HDF5_PACKAGE_NAME}_FIND_COMPONENTS)
     set (hdf5_comp2)
-    if (${comp} STREQUAL "C")
+    if (comp STREQUAL "C")
       set (hdf5_comp "hdf5")
-    elseif (${comp} STREQUAL "CXX")
+    elseif (comp STREQUAL "CXX")
       set (hdf5_comp "hdf5_cpp")
-    elseif (${comp} STREQUAL "HL")
+    elseif (comp STREQUAL "HL")
       set (hdf5_comp "hdf5_hl")
-    elseif (${comp} STREQUAL "CXX_HL")
+    elseif (comp STREQUAL "CXX_HL")
       set (hdf5_comp "hdf5_hl_cpp")
-    elseif (${comp} STREQUAL "Java")
+    elseif (comp STREQUAL "Java")
       set (hdf5_comp "hdf5_java")
-    elseif (${comp} STREQUAL "Tools")
+    elseif (comp STREQUAL "Tools")
       set (hdf5_comp "hdf5_tools")
-    elseif (${comp} STREQUAL "Fortran")
+    elseif (comp STREQUAL "Fortran")
       set (hdf5_comp2 "hdf5_f90cstub")
       set (hdf5_comp "hdf5_fortran")
-    elseif (${comp} STREQUAL "Fortran_HL")
+    elseif (comp STREQUAL "Fortran_HL")
       set (hdf5_comp2 "hdf5_hl_f90cstub")
       set (hdf5_comp "hdf5_hl_fortran")
     endif ()
-    if (${comp} STREQUAL "Java")
+    if (comp STREQUAL "Java")
       list (FIND ${HDF5_PACKAGE_NAME}_EXPORT_LIBRARIES "${hdf5_comp}" HAVE_COMP)
     else ()
       list (FIND ${HDF5_PACKAGE_NAME}_EXPORT_LIBRARIES "${hdf5_comp}-${libtype}" HAVE_COMP)
     endif ()
     if (${HAVE_COMP} LESS 0)
-      if (${comp} STREQUAL "Java")
+      if (comp STREQUAL "Java")
         set (${HDF5_PACKAGE_NAME}_${comp}_FOUND 0)
       else ()
         set (${HDF5_PACKAGE_NAME}_${libtype}_${comp}_FOUND 0)
@@ -183,7 +186,7 @@ foreach (libtype IN LISTS ${HDF5_PACKAGE_NAME}_LIB_TYPE)
           string(TOUPPER ${HDF5_PACKAGE_NAME}_${comp}_${libtype}_LIBRARY COMP_LIBRARY)
           set (${COMP_LIBRARY} ${${COMP_LIBRARY}} @HDF5_PACKAGE@::${hdf5_comp2}-${libtype} @HDF5_PACKAGE@::${hdf5_comp}-${libtype})
         endif ()
-      elseif (${comp} STREQUAL "Java")
+      elseif (comp STREQUAL "Java")
         set (${HDF5_PACKAGE_NAME}_${comp}_FOUND 1)
         string(TOUPPER ${HDF5_PACKAGE_NAME}_${comp}_LIBRARY COMP_LIBRARY)
         set (${COMP_LIBRARY} ${${COMP_LIBRARY}} hdf5::${hdf5_comp})

config/cmake/jrunTest.cmake

@@ -32,9 +32,6 @@ endif ()
 if (NOT TEST_CLASSPATH)
   message (STATUS "Require TEST_CLASSPATH to be defined")
 endif ()
-if (NOT TEST_REFERENCE)
-  message (FATAL_ERROR "Require TEST_REFERENCE to be defined")
-endif ()
 
 if (EXISTS ${TEST_FOLDER}/${TEST_OUTPUT})
   file (REMOVE ${TEST_FOLDER}/${TEST_OUTPUT})
@@ -44,14 +41,6 @@ if (EXISTS ${TEST_FOLDER}/${TEST_OUTPUT}.err)
   file (REMOVE ${TEST_FOLDER}/${TEST_OUTPUT}.err)
 endif ()
 
-# if there is not an error reference file add the error output to the stdout file
-if (NOT TEST_ERRREF)
-  if (NOT SKIP_APPEND)
-    # append error file since skip was not defined
-    set (ERROR_APPEND 1)
-  endif ()
-endif ()
-
 if (NOT TEST_LOG_LEVEL)
   set (LOG_LEVEL "info")
 else ()
@@ -88,10 +77,10 @@ if (EXISTS ${TEST_FOLDER}/${TEST_OUTPUT}.err)
   endif ()
 
   if (NOT ERROR_APPEND)
-    # append error output to the stdout output file
+    # write back to original .err file
     file (WRITE ${TEST_FOLDER}/${TEST_OUTPUT}.err "${TEST_STREAM}")
   else ()
-    # write back to original .err file
+    # append error output to the stdout output file
     file (APPEND ${TEST_FOLDER}/${TEST_OUTPUT} "${TEST_STREAM}")
   endif ()
 endif ()
@@ -121,8 +110,8 @@ if (TEST_MASK_ERROR)
   endif ()
 endif ()
 
-# if the return value is !=0 bail out
-if (NOT "${TEST_RESULT}" STREQUAL "${TEST_EXPECT}")
+# if the return value is !=expected bail out
+if (NOT TEST_RESULT EQUAL TEST_EXPECT)
   message (STATUS "ERROR OUTPUT: ${TEST_STREAM}")
   message (FATAL_ERROR "Failed: Test program ${TEST_PROGRAM} exited != 0.\n${TEST_ERROR}")
 endif ()
@@ -131,54 +120,56 @@ message (STATUS "COMMAND Error: ${TEST_ERROR}")
 
 # compare output files to references unless this must be skipped
 if (NOT TEST_SKIP_COMPARE)
-  if (WIN32 AND NOT MINGW)
-    file (READ ${TEST_FOLDER}/${TEST_REFERENCE} TEST_STREAM)
-    file (WRITE ${TEST_FOLDER}/${TEST_REFERENCE} "${TEST_STREAM}")
-  endif ()
+  if (EXISTS ${TEST_FOLDER}/${TEST_REFERENCE})
+    if (WIN32 AND NOT MINGW)
+      file (READ ${TEST_FOLDER}/${TEST_REFERENCE} TEST_STREAM)
+      file (WRITE ${TEST_FOLDER}/${TEST_REFERENCE} "${TEST_STREAM}")
+    endif ()
 
-  # now compare the output with the reference
-  execute_process (
-      COMMAND ${CMAKE_COMMAND} -E compare_files ${TEST_FOLDER}/${TEST_OUTPUT} ${TEST_FOLDER}/${TEST_REFERENCE}
-      RESULT_VARIABLE TEST_RESULT
-  )
-  if (NOT "${TEST_RESULT}" STREQUAL "0")
-    set (TEST_RESULT 0)
-    file (STRINGS ${TEST_FOLDER}/${TEST_OUTPUT} test_act)
-    list (LENGTH test_act len_act)
-    file (STRINGS ${TEST_FOLDER}/${TEST_REFERENCE} test_ref)
-    list (LENGTH test_ref len_ref)
-    if (NOT "${len_act}" STREQUAL "0" AND NOT "${len_ref}" STREQUAL "0")
-      math (EXPR _FP_LEN "${len_ref} - 1")
-      foreach (line RANGE 0 ${_FP_LEN})
-        list (GET test_act ${line} str_act)
-        list (GET test_ref ${line} str_ref)
-        if (NOT "${str_act}" STREQUAL "${str_ref}")
-          if (NOT "${str_act}" STREQUAL "")
-            set (TEST_RESULT 1)
-            message ("line = ${line}\n***ACTUAL: ${str_act}\n****REFER: ${str_ref}\n")
+    # now compare the output with the reference
+    execute_process (
+        COMMAND ${CMAKE_COMMAND} -E compare_files ${TEST_FOLDER}/${TEST_OUTPUT} ${TEST_FOLDER}/${TEST_REFERENCE}
+        RESULT_VARIABLE TEST_RESULT
+    )
+    if (TEST_RESULT)
+      set (TEST_RESULT 0)
+      file (STRINGS ${TEST_FOLDER}/${TEST_OUTPUT} test_act)
+      list (LENGTH test_act len_act)
+      file (STRINGS ${TEST_FOLDER}/${TEST_REFERENCE} test_ref)
+      list (LENGTH test_ref len_ref)
+      if (len_act GREATER 0 AND len_ref GREATER 0)
+        math (EXPR _FP_LEN "${len_ref} - 1")
+        foreach (line RANGE 0 ${_FP_LEN})
+          list (GET test_act ${line} str_act)
+          list (GET test_ref ${line} str_ref)
+          if (NOT str_act STREQUAL str_ref)
+            if (str_act)
+              set (TEST_RESULT 1)
+              message ("line = ${line}\n***ACTUAL: ${str_act}\n****REFER: ${str_ref}\n")
+            endif ()
           endif ()
+        endforeach ()
+      else ()
+        if (len_act EQUAL 0)
+          message (STATUS "COMPARE Failed: ${TEST_FOLDER}/${TEST_OUTPUT} is empty")
+        endif ()
+        if (len_ref EQUAL 0)
+          message (STATUS "COMPARE Failed: ${TEST_FOLDER}/${TEST_REFERENCE} is empty")
         endif ()
-      endforeach ()
-    else ()
-      if ("${len_act}" STREQUAL "0")
-        message (STATUS "COMPARE Failed: ${TEST_FOLDER}/${TEST_OUTPUT} is empty")
       endif ()
-      if ("${len_ref}" STREQUAL "0")
-        message (STATUS "COMPARE Failed: ${TEST_FOLDER}/${TEST_REFERENCE} is empty")
+      if (NOT len_act EQUAL len_ref)
+        set (TEST_RESULT 1)
       endif ()
     endif ()
-    if (NOT "${len_act}" STREQUAL "${len_ref}")
-      set (TEST_RESULT 1)
+
+    message (STATUS "COMPARE Result: ${TEST_RESULT}")
+
+    # again, if return value is !=0 scream and shout
+    if (TEST_RESULT)
+      message (FATAL_ERROR "Failed: The output of ${TEST_OUTPUT} did not match ${TEST_REFERENCE}")
     endif ()
   endif ()
 
-  message (STATUS "COMPARE Result: ${TEST_RESULT}")
-
-  # again, if return value is !=0 scream and shout
-  if (NOT "${TEST_RESULT}" STREQUAL "0")
-    message (FATAL_ERROR "Failed: The output of ${TEST_OUTPUT} did not match ${TEST_REFERENCE}")
-  endif ()
-
   # now compare the .err file with the error reference, if supplied
   if (TEST_ERRREF)
     if (WIN32 AND NOT MINGW)
@@ -191,34 +182,34 @@ if (NOT TEST_SKIP_COMPARE)
         COMMAND ${CMAKE_COMMAND} -E compare_files ${TEST_FOLDER}/${TEST_OUTPUT}.err ${TEST_FOLDER}/${TEST_ERRREF}
         RESULT_VARIABLE TEST_RESULT
     )
-    if (NOT "${TEST_RESULT}" STREQUAL "0")
+    if (TEST_RESULT)
       set (TEST_RESULT 0)
       file (STRINGS ${TEST_FOLDER}/${TEST_OUTPUT}.err test_act)
       list (LENGTH test_act len_act)
       file (STRINGS ${TEST_FOLDER}/${TEST_ERRREF} test_ref)
       list (LENGTH test_ref len_ref)
       math (EXPR _FP_LEN "${len_ref} - 1")
-      if (NOT "${len_act}" STREQUAL "0" AND NOT "${len_ref}" STREQUAL "0")
+      if (len_act GREATER 0 AND len_ref GREATER 0)
         math (EXPR _FP_LEN "${len_ref} - 1")
         foreach (line RANGE 0 ${_FP_LEN})
           list (GET test_act ${line} str_act)
           list (GET test_ref ${line} str_ref)
-          if (NOT "${str_act}" STREQUAL "${str_ref}")
-            if (NOT "${str_act}" STREQUAL "")
+          if (NOT str_act STREQUAL str_ref)
+            if (str_act)
               set (TEST_RESULT 1)
               message ("line = ${line}\n***ACTUAL: ${str_act}\n****REFER: ${str_ref}\n")
             endif ()
           endif ()
         endforeach ()
       else ()
-        if ("${len_act}" STREQUAL "0")
+        if (len_act EQUAL 0)
           message (STATUS "COMPARE Failed: ${TEST_FOLDER}/${TEST_OUTPUT}.err is empty")
         endif ()
-        if ("${len_ref}" STREQUAL "0")
+        if (len_ref EQUAL 0)
           message (STATUS "COMPARE Failed: ${TEST_FOLDER}/${TEST_ERRREF} is empty")
         endif ()
-      endif()
-      if (NOT "${len_act}" STREQUAL "${len_ref}")
+      endif ()
+      if (NOT len_act EQUAL len_ref)
         set (TEST_RESULT 1)
       endif ()
     endif ()
@@ -226,7 +217,7 @@ if (NOT TEST_SKIP_COMPARE)
     message (STATUS "COMPARE Result: ${TEST_RESULT}")
 
     # again, if return value is !=0 scream and shout
-    if (NOT ${TEST_RESULT} STREQUAL 0)
+    if (TEST_RESULT)
       message (FATAL_ERROR "Failed: The error output of ${TEST_OUTPUT}.err did not match ${TEST_ERRREF}")
     endif ()
   endif ()
@@ -239,15 +230,15 @@ if (TEST_GREP_COMPARE)
   # TEST_REFERENCE should always be matched
   string (REGEX MATCH "${TEST_REFERENCE}" TEST_MATCH ${TEST_STREAM})
   string (COMPARE EQUAL "${TEST_REFERENCE}" "${TEST_MATCH}" TEST_RESULT)
-  if ("${TEST_RESULT}" STREQUAL "0")
+  if (NOT TEST_RESULT)
     message (FATAL_ERROR "Failed: The output of ${TEST_PROGRAM} did not contain ${TEST_REFERENCE}")
   endif ()
 
   string (REGEX MATCH "${TEST_FILTER}" TEST_MATCH ${TEST_STREAM})
-  if ("${TEST_EXPECT}" STREQUAL "1")
+  if (TEST_EXPECT)
     # TEST_EXPECT (1) interperts TEST_FILTER as NOT to match
     string (LENGTH "${TEST_MATCH}" TEST_RESULT)
-    if (NOT "${TEST_RESULT}" STREQUAL "0")
+    if (TEST_RESULT)
       message (FATAL_ERROR "Failed: The output of ${TEST_PROGRAM} did contain ${TEST_FILTER}")
     endif ()
   endif ()

config/cmake/libhdf5.settings.cmake.in

@@ -64,20 +64,21 @@ Languages:
 
 Features:
 ---------
-                  Parallel HDF5: @HDF5_ENABLE_PARALLEL@
-             High-level library: @HDF5_BUILD_HL_LIB@
-                   Threadsafety: @HDF5_ENABLE_THREADSAFE@
-            Default API mapping: @DEFAULT_API_VERSION@
- With deprecated public symbols: @HDF5_ENABLE_DEPRECATED_SYMBOLS@
-         I/O filters (external): @EXTERNAL_FILTERS@
-                            MPE: @H5_HAVE_LIBLMPE@
-                     Direct VFD: @H5_HAVE_DIRECT@
-                        dmalloc: @H5_HAVE_LIBDMALLOC@
- Packages w/ extra debug output: @INTERNAL_DEBUG_OUTPUT@
-                    API Tracing: @HDF5_ENABLE_TRACE@
-           Using memory checker: @HDF5_ENABLE_USING_MEMCHECKER@
-Memory allocation sanity checks: @HDF5_MEMORY_ALLOC_SANITY_CHECK@
-            Metadata trace file: @METADATATRACEFILE@
-         Function Stack Tracing: @HDF5_ENABLE_CODESTACK@
-      Strict File Format Checks: @HDF5_STRICT_FORMAT_CHECKS@
-   Optimization Instrumentation: @HDF5_Enable_Instrument@
+                   Parallel HDF5: @HDF5_ENABLE_PARALLEL@
+Parallel Filtered Dataset Writes: @PARALLEL_FILTERED_WRITES@
+              Large Parallel I/O: @LARGE_PARALLEL_IO@
+              High-level library: @HDF5_BUILD_HL_LIB@
+                    Threadsafety: @HDF5_ENABLE_THREADSAFE@
+             Default API mapping: @DEFAULT_API_VERSION@
+  With deprecated public symbols: @HDF5_ENABLE_DEPRECATED_SYMBOLS@
+          I/O filters (external): @EXTERNAL_FILTERS@
+                             MPE: @H5_HAVE_LIBLMPE@
+                      Direct VFD: @H5_HAVE_DIRECT@
+                         dmalloc: @H5_HAVE_LIBDMALLOC@
+  Packages w/ extra debug output: @INTERNAL_DEBUG_OUTPUT@
+                     API Tracing: @HDF5_ENABLE_TRACE@
+            Using memory checker: @HDF5_ENABLE_USING_MEMCHECKER@
+ Memory allocation sanity checks: @HDF5_MEMORY_ALLOC_SANITY_CHECK@
+          Function Stack Tracing: @HDF5_ENABLE_CODESTACK@
+       Strict File Format Checks: @HDF5_STRICT_FORMAT_CHECKS@
+    Optimization Instrumentation: @HDF5_Enable_Instrument@

config/cmake/patch.xml

@@ -1,5 +1,5 @@
 <CPackWiXPatch>
-	<CPackWiXFragment Id="CM_CP_libraries.bin.hdf5.dll">
+    <CPackWiXFragment Id="CM_CP_libraries.bin.hdf5.dll">
         <Environment Id="PATH" 
              Name="PATH" 
              Value="[CM_DP_libraries.bin]" 
@@ -7,5 +7,5 @@
              Part="last" 
              Action="set" 
              System="yes"/>
-	</CPackWiXFragment>
+    </CPackWiXFragment>
 </CPackWiXPatch>

config/cmake/scripts/CTestScript.cmake

@@ -9,294 +9,340 @@
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #
-cmake_minimum_required (VERSION 3.10)
-########################################################
-# This dashboard is maintained by The HDF Group
-# For any comments please contact cdashhelp@hdfgroup.org
-#
-########################################################
-# -----------------------------------------------------------
-# -- Get environment
-# -----------------------------------------------------------
-if (NOT SITE_OS_NAME)
-  ## machine name not provided - attempt to discover with uname
-  ## -- set hostname
-  ## --------------------------
-  find_program (HOSTNAME_CMD NAMES hostname)
-  exec_program (${HOSTNAME_CMD} ARGS OUTPUT_VARIABLE HOSTNAME)
-  set (CTEST_SITE  "${HOSTNAME}${CTEST_SITE_EXT}")
-  find_program (UNAME NAMES uname)
-  macro (getuname name flag)
-    exec_program ("${UNAME}" ARGS "${flag}" OUTPUT_VARIABLE "${name}")
-  endmacro ()
-
-  getuname (osname -s)
-  getuname (osrel  -r)
-  getuname (cpu    -m)
-  message (STATUS "Dashboard script uname output: ${osname}-${osrel}-${cpu}\n")
-
-  set (CTEST_BUILD_NAME  "${osname}-${osrel}-${cpu}")
-  if (SITE_BUILDNAME_SUFFIX)
-    set (CTEST_BUILD_NAME  "${SITE_BUILDNAME_SUFFIX}-${CTEST_BUILD_NAME}")
-  endif ()
-  set (BUILD_OPTIONS "${ADD_BUILD_OPTIONS}")
-else ()
-  ## machine name provided
-  ## --------------------------
-  if (CMAKE_HOST_UNIX)
-    set (CTEST_BUILD_NAME "${SITE_OS_NAME}-${SITE_OS_VERSION}-${SITE_OS_BITS}-${SITE_COMPILER_NAME}-${SITE_COMPILER_VERSION}")
-  else ()
-    set (CTEST_BUILD_NAME "${SITE_OS_NAME}-${SITE_OS_VERSION}-${SITE_COMPILER_NAME}")
-  endif ()
-  if (SITE_BUILDNAME_SUFFIX)
-    set (CTEST_BUILD_NAME "${CTEST_BUILD_NAME}-${SITE_BUILDNAME_SUFFIX}")
-  endif ()
-  set (BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DSITE:STRING=${CTEST_SITE} -DBUILDNAME:STRING=${CTEST_BUILD_NAME}")
-endif ()
-
-#-----------------------------------------------------------------------------
-# MAC machines need special option
-#-----------------------------------------------------------------------------
-if (APPLE)
-  # Compiler choice
-  execute_process (COMMAND xcrun --find cc OUTPUT_VARIABLE XCODE_CC OUTPUT_STRIP_TRAILING_WHITESPACE)
-  execute_process (COMMAND xcrun --find c++ OUTPUT_VARIABLE XCODE_CXX OUTPUT_STRIP_TRAILING_WHITESPACE)
-  set (ENV{CC} "${XCODE_CC}")
-  set (ENV{CXX} "${XCODE_CXX}")
-
-  set (BUILD_OPTIONS "${BUILD_OPTIONS} -DCTEST_USE_LAUNCHERS:BOOL=ON -DCMAKE_BUILD_WITH_INSTALL_RPATH:BOOL=OFF")
-endif ()
-
-#-----------------------------------------------------------------------------
-set (NEED_REPOSITORY_CHECKOUT 0)
-set (CTEST_CMAKE_COMMAND "\"${CMAKE_COMMAND}\"")
-if (CTEST_USE_TAR_SOURCE)
-  ## Uncompress source if tar file provided
-  ## --------------------------
-  if (WIN32)
-    message (STATUS "extracting... [${CMAKE_EXECUTABLE_NAME} x ${CTEST_DASHBOARD_ROOT}\\${CTEST_USE_TAR_SOURCE}.zip]")
-    execute_process (COMMAND ${CMAKE_EXECUTABLE_NAME} -E tar -xvf ${CTEST_DASHBOARD_ROOT}\\${CTEST_USE_TAR_SOURCE}.zip RESULT_VARIABLE rv)
-  else ()
-    message (STATUS "extracting... [${CMAKE_EXECUTABLE_NAME} -E tar -xvf ${CTEST_DASHBOARD_ROOT}/${CTEST_USE_TAR_SOURCE}.tar]")
-    execute_process (COMMAND ${CMAKE_EXECUTABLE_NAME} -E tar -xvf ${CTEST_DASHBOARD_ROOT}/${CTEST_USE_TAR_SOURCE}.tar RESULT_VARIABLE rv)
-  endif ()
-
-  if (NOT rv EQUAL 0)
-    message (STATUS "extracting... [error-(${rv}) clean up]")
-    file (REMOVE_RECURSE "${CTEST_SOURCE_DIRECTORY}")
-    message (FATAL_ERROR "error: extract of ${CTEST_USE_TAR_SOURCE} failed")
-  endif ()
-
-  file (RENAME ${CTEST_DASHBOARD_ROOT}/${CTEST_USE_TAR_SOURCE} ${CTEST_SOURCE_DIRECTORY})
-  set (LOCAL_SKIP_UPDATE "TRUE")
-else ()
-  if (LOCAL_UPDATE)
-    if (CTEST_USE_GIT_SOURCE)
-      find_program (CTEST_GIT_COMMAND NAMES git git.cmd)
-      set (CTEST_GIT_UPDATE_OPTIONS)
-
-      if (NOT EXISTS "${CTEST_SOURCE_DIRECTORY}")
-        set (NEED_REPOSITORY_CHECKOUT 1)
-      endif ()
-
-      if (${NEED_REPOSITORY_CHECKOUT})
-        if (REPOSITORY_BRANCH)
-          set (CTEST_GIT_options "clone \"${REPOSITORY_URL}\" --branch  \"${REPOSITORY_BRANCH}\" --single-branch \"${CTEST_SOURCE_DIRECTORY}\" --recurse-submodules")
-        else ()
-          set (CTEST_GIT_options "clone \"${REPOSITORY_URL}\" \"${CTEST_SOURCE_DIRECTORY}\" --recurse-submodules")
-        endif ()
-        set (CTEST_CHECKOUT_COMMAND "${CTEST_GIT_COMMAND} ${CTEST_GIT_options}")
-      else ()
-        set (CTEST_GIT_options "pull")
-      endif ()
-      set (CTEST_UPDATE_COMMAND "${CTEST_GIT_COMMAND}")
-    else ()
-      ## --------------------------
-      ## use subversion to get source
-      #-----------------------------------------------------------------------------
-      ## cygwin does not handle the find_package() call
-      ## --------------------------
-      set (CTEST_UPDATE_COMMAND "SVNCommand")
-      if (NOT SITE_CYGWIN})
-        find_package (Subversion)
-        set (CTEST_SVN_COMMAND "${Subversion_SVN_EXECUTABLE}")
-        set (CTEST_UPDATE_COMMAND "${Subversion_SVN_EXECUTABLE}")
-      else ()
-        set (CTEST_SVN_COMMAND "/usr/bin/svn")
-        set (CTEST_UPDATE_COMMAND "/usr/bin/svn")
-      endif ()
-
-      if (NOT EXISTS "${CTEST_SOURCE_DIRECTORY}")
-        set (NEED_REPOSITORY_CHECKOUT 1)
-      endif ()
-
-      if (NOT CTEST_REPO_VERSION)
-        set (CTEST_REPO_VERSION "HEAD")
-      endif ()
-      if (${NEED_REPOSITORY_CHECKOUT})
-        set (CTEST_CHECKOUT_COMMAND
-            "\"${CTEST_SVN_COMMAND}\" co ${REPOSITORY_URL} \"${CTEST_SOURCE_DIRECTORY}\" -r ${CTEST_REPO_VERSION}")
-      else ()
-        if (CTEST_REPO_VERSION)
-          set (CTEST_SVN_UPDATE_OPTIONS "-r ${CTEST_REPO_VERSION}")
-        endif ()
-      endif ()
-    endif ()
-  endif ()
-endif ()
-
-#-----------------------------------------------------------------------------
-## Clear the build directory
-## --------------------------
-set (CTEST_START_WITH_EMPTY_BINARY_DIRECTORY TRUE)
-if (NOT EXISTS "${CTEST_BINARY_DIRECTORY}")
-  file (MAKE_DIRECTORY "${CTEST_BINARY_DIRECTORY}")
-else ()
-  ctest_empty_binary_directory (${CTEST_BINARY_DIRECTORY})
-endif ()
-
-# Use multiple CPU cores to build
-include (ProcessorCount)
-ProcessorCount (N)
-if (NOT N EQUAL 0)
-  if (NOT WIN32)
-    set (CTEST_BUILD_FLAGS -j${N})
-  endif ()
-  set (ctest_test_args ${ctest_test_args} PARALLEL_LEVEL ${N})
-endif ()
-
-#-----------------------------------------------------------------------------
-# Send the main script as a note.
-list (APPEND CTEST_NOTES_FILES
-    "${CTEST_SCRIPT_DIRECTORY}/${CTEST_SCRIPT_NAME}"
-    "${CMAKE_CURRENT_LIST_FILE}"
-    "${CTEST_SOURCE_DIRECTORY}/config/cmake/cacheinit.cmake"
-)
-
-#-----------------------------------------------------------------------------
-# Check for required variables.
-# --------------------------
-foreach (req
-    CTEST_CMAKE_GENERATOR
-    CTEST_SITE
-    CTEST_BUILD_NAME
-  )
-  if (NOT DEFINED ${req})
-    message (FATAL_ERROR "The containing script must set ${req}")
-  endif ()
-endforeach ()
-
-#-----------------------------------------------------------------------------
-# Initialize the CTEST commands
-#------------------------------
-if(CMAKE_GENERATOR_TOOLSET)
-  set(CTEST_CONFIGURE_TOOLSET  "-T${CMAKE_GENERATOR_TOOLSET}")
-else ()
-  set(CTEST_CONFIGURE_TOOLSET  "")
-endif()
-if (LOCAL_MEMCHECK_TEST)
-  find_program (CTEST_MEMORYCHECK_COMMAND NAMES valgrind)
-  set (CTEST_CONFIGURE_COMMAND
-      "${CTEST_CMAKE_COMMAND} -C \"${CTEST_SOURCE_DIRECTORY}/config/cmake/mccacheinit.cmake\" -DCMAKE_BUILD_TYPE:STRING=${CTEST_CONFIGURATION_TYPE} ${BUILD_OPTIONS} \"-G${CTEST_CMAKE_GENERATOR}\" \"${CTEST_CONFIGURE_TOOLSET}\" \"${CTEST_SOURCE_DIRECTORY}\""
-  )
-else ()
-  if (LOCAL_COVERAGE_TEST)
-    find_program (CTEST_COVERAGE_COMMAND NAMES gcov)
-  endif ()
-  set (CTEST_CONFIGURE_COMMAND
-      "${CTEST_CMAKE_COMMAND} -C \"${CTEST_SOURCE_DIRECTORY}/config/cmake/cacheinit.cmake\" -DCMAKE_BUILD_TYPE:STRING=${CTEST_CONFIGURATION_TYPE} ${BUILD_OPTIONS} \"-G${CTEST_CMAKE_GENERATOR}\" \"${CTEST_CONFIGURE_TOOLSET}\" \"${CTEST_SOURCE_DIRECTORY}\""
-  )
-endif ()
-
-#-----------------------------------------------------------------------------
-## -- set output to english
-set ($ENV{LC_MESSAGES}  "en_EN")
-
-# Print summary information.
-foreach (v
-    CTEST_SITE
-    CTEST_BUILD_NAME
-    CTEST_SOURCE_DIRECTORY
-    CTEST_BINARY_DIRECTORY
-    CTEST_CMAKE_GENERATOR
-    CTEST_CONFIGURATION_TYPE
-    CTEST_GIT_COMMAND
-    CTEST_CHECKOUT_COMMAND
-    CTEST_CONFIGURE_COMMAND
-    CTEST_SCRIPT_DIRECTORY
-    CTEST_USE_LAUNCHERS
-  )
-  set (vars "${vars}  ${v}=[${${v}}]\n")
-endforeach ()
-message (STATUS "Dashboard script configuration:\n${vars}\n")
-
-#-----------------------------------------------------------------------------
-#-----------------------------------------------------------------------------
-  ## NORMAL process
-  ## -- LOCAL_UPDATE updates the source folder from svn
-  ## -- LOCAL_SUBMIT reports to CDash server
-  ## -- LOCAL_SKIP_TEST skips the test process (only builds)
-  ## -- LOCAL_MEMCHECK_TEST executes the Valgrind testing
-  ## -- LOCAL_COVERAGE_TEST executes code coverage process
-  ## --------------------------
-  ctest_start (${MODEL} TRACK ${MODEL})
-  if (LOCAL_UPDATE)
-    ctest_update (SOURCE "${CTEST_SOURCE_DIRECTORY}")
-  endif ()
-  configure_file (${CTEST_SOURCE_DIRECTORY}/config/cmake/CTestCustom.cmake ${CTEST_BINARY_DIRECTORY}/CTestCustom.cmake)
-  ctest_read_custom_files ("${CTEST_BINARY_DIRECTORY}")
-  ctest_configure (BUILD "${CTEST_BINARY_DIRECTORY}" RETURN_VALUE res)
-  if (LOCAL_SUBMIT)
-    ctest_submit (PARTS Update Configure Notes)
-  endif ()
-  if (${res} LESS 0 OR ${res} GREATER 0)
-    file (APPEND ${CTEST_SCRIPT_DIRECTORY}/FailedCTest.txt "Failed Configure: ${res}\n")
-  endif ()
-
-  ctest_build (BUILD "${CTEST_BINARY_DIRECTORY}" APPEND RETURN_VALUE res NUMBER_ERRORS errval)
-  if (LOCAL_SUBMIT)
-    ctest_submit (PARTS Build)
-  endif ()
-  if (${res} LESS 0 OR ${res} GREATER 0 OR ${errval} GREATER 0)
-    file (APPEND ${CTEST_SCRIPT_DIRECTORY}/FailedCTest.txt "Failed ${errval} Build: ${res}\n")
-  endif ()
-
-  if (NOT LOCAL_SKIP_TEST)
-    if (NOT LOCAL_MEMCHECK_TEST)
-      ctest_test (BUILD "${CTEST_BINARY_DIRECTORY}" APPEND ${ctest_test_args} RETURN_VALUE res)
-      if (LOCAL_SUBMIT)
-        ctest_submit (PARTS Test)
-      endif ()
-      if (${res} LESS 0 OR ${res} GREATER 0)
-        file (APPEND ${CTEST_SCRIPT_DIRECTORY}/FailedCTest.txt "Failed Tests: ${res}\n")
-      endif ()
-    else ()
-      ctest_memcheck (BUILD "${CTEST_BINARY_DIRECTORY}" APPEND ${ctest_test_args})
-      if (LOCAL_SUBMIT)
-        ctest_submit (PARTS MemCheck)
-      endif ()
-    endif ()
-    if (LOCAL_COVERAGE_TEST)
-      ctest_coverage (BUILD "${CTEST_BINARY_DIRECTORY}" APPEND)
-      if (LOCAL_SUBMIT)
-        ctest_submit (PARTS Coverage)
-      endif ()
-    endif ()
-  endif ()
-
-  if (NOT LOCAL_MEMCHECK_TEST AND NOT LOCAL_NO_PACKAGE AND NOT LOCAL_SKIP_BUILD)
-    ##-----------------------------------------------
-    ## Package the product
-    ##-----------------------------------------------
-    execute_process (COMMAND cpack -C ${CTEST_CONFIGURATION_TYPE} -V
-      WORKING_DIRECTORY ${CTEST_BINARY_DIRECTORY}
-      RESULT_VARIABLE cpackResult
-      OUTPUT_VARIABLE cpackLog
-      ERROR_VARIABLE cpackLog.err
-    )
-    file (WRITE ${CTEST_BINARY_DIRECTORY}/cpack.log "${cpackLog.err}" "${cpackLog}")
-    if (cpackResult GREATER 0)
-      file (APPEND ${CTEST_SCRIPT_DIRECTORY}/FailedCTest.txt "Failed packaging: ${cpackResult}:${cpackLog.err} \n")
-    endif ()
-  endif ()
-#-----------------------------------------------------------------------------
+cmake_minimum_required (VERSION 3.10)
+########################################################
+# This dashboard is maintained by The HDF Group
+# For any comments please contact cdashhelp@hdfgroup.org
+#
+########################################################
+# -----------------------------------------------------------
+# -- Get environment
+# -----------------------------------------------------------
+if (NOT SITE_OS_NAME)
+  ## machine name not provided - attempt to discover with uname
+  ## -- set hostname
+  ## --------------------------
+  find_program (HOSTNAME_CMD NAMES hostname)
+  exec_program (${HOSTNAME_CMD} ARGS OUTPUT_VARIABLE HOSTNAME)
+  set (CTEST_SITE  "${HOSTNAME}${CTEST_SITE_EXT}")
+  find_program (UNAME NAMES uname)
+  macro (getuname name flag)
+    exec_program ("${UNAME}" ARGS "${flag}" OUTPUT_VARIABLE "${name}")
+  endmacro ()
+
+  getuname (osname -s)
+  getuname (osrel  -r)
+  getuname (cpu    -m)
+  message (STATUS "Dashboard script uname output: ${osname}-${osrel}-${cpu}\n")
+
+  set (CTEST_BUILD_NAME  "${osname}-${osrel}-${cpu}")
+else ()
+  ## machine name provided
+  ## --------------------------
+  if (CMAKE_HOST_UNIX)
+    set (CTEST_BUILD_NAME "${SITE_OS_NAME}-${SITE_OS_VERSION}-${SITE_OS_BITS}-${SITE_COMPILER_NAME}-${SITE_COMPILER_VERSION}")
+  else ()
+    set (CTEST_BUILD_NAME "${SITE_OS_NAME}-${SITE_OS_VERSION}-${SITE_COMPILER_NAME}")
+  endif ()
+endif ()
+if (SITE_BUILDNAME_SUFFIX)
+  set (CTEST_BUILD_NAME  "${SITE_BUILDNAME_SUFFIX}-${CTEST_BUILD_NAME}")
+endif ()
+set (BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DSITE:STRING=${CTEST_SITE} -DBUILDNAME:STRING=${CTEST_BUILD_NAME}")
+
+#-----------------------------------------------------------------------------
+# MAC machines need special option
+#-----------------------------------------------------------------------------
+if (APPLE)
+  # Compiler choice
+  execute_process (COMMAND xcrun --find cc OUTPUT_VARIABLE XCODE_CC OUTPUT_STRIP_TRAILING_WHITESPACE)
+  execute_process (COMMAND xcrun --find c++ OUTPUT_VARIABLE XCODE_CXX OUTPUT_STRIP_TRAILING_WHITESPACE)
+  set (ENV{CC} "${XCODE_CC}")
+  set (ENV{CXX} "${XCODE_CXX}")
+
+  set (BUILD_OPTIONS "${BUILD_OPTIONS} -DCTEST_USE_LAUNCHERS:BOOL=ON -DCMAKE_BUILD_WITH_INSTALL_RPATH:BOOL=OFF")
+endif ()
+
+#-----------------------------------------------------------------------------
+set (NEED_REPOSITORY_CHECKOUT 0)
+set (CTEST_CMAKE_COMMAND "\"${CMAKE_COMMAND}\"")
+if (CTEST_USE_TAR_SOURCE)
+  ## Uncompress source if tar file provided
+  ## --------------------------
+  if (WIN32)
+    message (STATUS "extracting... [${CMAKE_EXECUTABLE_NAME} x ${CTEST_DASHBOARD_ROOT}\\${CTEST_USE_TAR_SOURCE}.zip]")
+    execute_process (COMMAND ${CMAKE_EXECUTABLE_NAME} -E tar -xvf ${CTEST_DASHBOARD_ROOT}\\${CTEST_USE_TAR_SOURCE}.zip RESULT_VARIABLE rv)
+  else ()
+    message (STATUS "extracting... [${CMAKE_EXECUTABLE_NAME} -E tar -xvf ${CTEST_DASHBOARD_ROOT}/${CTEST_USE_TAR_SOURCE}.tar]")
+    execute_process (COMMAND ${CMAKE_EXECUTABLE_NAME} -E tar -xvf ${CTEST_DASHBOARD_ROOT}/${CTEST_USE_TAR_SOURCE}.tar RESULT_VARIABLE rv)
+  endif ()
+
+  if (NOT rv EQUAL 0)
+    message (STATUS "extracting... [error-(${rv}) clean up]")
+    file (REMOVE_RECURSE "${CTEST_SOURCE_DIRECTORY}")
+    message (FATAL_ERROR "error: extract of ${CTEST_USE_TAR_SOURCE} failed")
+  endif ()
+
+  file (RENAME ${CTEST_DASHBOARD_ROOT}/${CTEST_USE_TAR_SOURCE} ${CTEST_SOURCE_DIRECTORY})
+  set (LOCAL_SKIP_UPDATE "TRUE")
+else ()
+  if (LOCAL_UPDATE)
+    if (CTEST_USE_GIT_SOURCE)
+      find_program (CTEST_GIT_COMMAND NAMES git git.cmd)
+      set (CTEST_GIT_UPDATE_OPTIONS)
+
+      if (NOT EXISTS "${CTEST_SOURCE_DIRECTORY}")
+        set (NEED_REPOSITORY_CHECKOUT 1)
+      endif ()
+
+      if (${NEED_REPOSITORY_CHECKOUT})
+        if (REPOSITORY_BRANCH)
+          set (CTEST_GIT_options "clone \"${REPOSITORY_URL}\" --branch  \"${REPOSITORY_BRANCH}\" --single-branch \"${CTEST_SOURCE_DIRECTORY}\" --recurse-submodules")
+        else ()
+          set (CTEST_GIT_options "clone \"${REPOSITORY_URL}\" \"${CTEST_SOURCE_DIRECTORY}\" --recurse-submodules")
+        endif ()
+        set (CTEST_CHECKOUT_COMMAND "${CTEST_GIT_COMMAND} ${CTEST_GIT_options}")
+      else ()
+        set (CTEST_GIT_options "pull")
+      endif ()
+      set (CTEST_UPDATE_COMMAND "${CTEST_GIT_COMMAND}")
+    else ()
+      ## --------------------------
+      ## use subversion to get source
+      #-----------------------------------------------------------------------------
+      ## cygwin does not handle the find_package() call
+      ## --------------------------
+      set (CTEST_UPDATE_COMMAND "SVNCommand")
+      if (NOT SITE_CYGWIN})
+        find_package (Subversion)
+        set (CTEST_SVN_COMMAND "${Subversion_SVN_EXECUTABLE}")
+        set (CTEST_UPDATE_COMMAND "${Subversion_SVN_EXECUTABLE}")
+      else ()
+        set (CTEST_SVN_COMMAND "/usr/bin/svn")
+        set (CTEST_UPDATE_COMMAND "/usr/bin/svn")
+      endif ()
+
+      if (NOT EXISTS "${CTEST_SOURCE_DIRECTORY}")
+        set (NEED_REPOSITORY_CHECKOUT 1)
+      endif ()
+
+      if (NOT CTEST_REPO_VERSION)
+        set (CTEST_REPO_VERSION "HEAD")
+      endif ()
+      if (${NEED_REPOSITORY_CHECKOUT})
+        set (CTEST_CHECKOUT_COMMAND
+            "\"${CTEST_SVN_COMMAND}\" co ${REPOSITORY_URL} \"${CTEST_SOURCE_DIRECTORY}\" -r ${CTEST_REPO_VERSION}")
+      else ()
+        if (CTEST_REPO_VERSION)
+          set (CTEST_SVN_UPDATE_OPTIONS "-r ${CTEST_REPO_VERSION}")
+        endif ()
+      endif ()
+    endif ()
+  endif ()
+endif ()
+
+#-----------------------------------------------------------------------------
+## Clear the build directory
+## --------------------------
+set (CTEST_START_WITH_EMPTY_BINARY_DIRECTORY TRUE)
+if (NOT EXISTS "${CTEST_BINARY_DIRECTORY}")
+  file (MAKE_DIRECTORY "${CTEST_BINARY_DIRECTORY}")
+else ()
+  ctest_empty_binary_directory (${CTEST_BINARY_DIRECTORY})
+endif ()
+
+# Use multiple CPU cores to build
+include (ProcessorCount)
+ProcessorCount (N)
+if (NOT N EQUAL 0)
+  if (MAX_PROC_COUNT)
+    if (N GREATER MAX_PROC_COUNT)
+      set (N ${MAX_PROC_COUNT})
+    endif ()
+  endif ()
+  if (NOT WIN32)
+    set (CTEST_BUILD_FLAGS -j${N})
+  endif ()
+  set (ctest_test_args ${ctest_test_args} PARALLEL_LEVEL ${N})
+endif ()
+
+#-----------------------------------------------------------------------------
+# Send the main script as a note.
+list (APPEND CTEST_NOTES_FILES
+    "${CTEST_SCRIPT_DIRECTORY}/${CTEST_SCRIPT_NAME}"
+    "${CMAKE_CURRENT_LIST_FILE}"
+    "${CTEST_SOURCE_DIRECTORY}/config/cmake/cacheinit.cmake"
+)
+
+#-----------------------------------------------------------------------------
+# Check for required variables.
+# --------------------------
+foreach (req
+    CTEST_CMAKE_GENERATOR
+    CTEST_SITE
+    CTEST_BUILD_NAME
+  )
+  if (NOT DEFINED ${req})
+    message (FATAL_ERROR "The containing script must set ${req}")
+  endif ()
+endforeach ()
+
+#-----------------------------------------------------------------------------
+# Initialize the CTEST commands
+#------------------------------
+if (CMAKE_GENERATOR_TOOLSET)
+  set (CTEST_CONFIGURE_TOOLSET  "-T${CMAKE_GENERATOR_TOOLSET}")
+else ()
+  set (CTEST_CONFIGURE_TOOLSET  "")
+endif()
+if (LOCAL_MEMCHECK_TEST)
+  find_program (CTEST_MEMORYCHECK_COMMAND NAMES valgrind)
+  set (CTEST_CONFIGURE_COMMAND
+      "${CTEST_CMAKE_COMMAND} -C \"${CTEST_SOURCE_DIRECTORY}/config/cmake/mccacheinit.cmake\" -DCMAKE_BUILD_TYPE:STRING=${CTEST_CONFIGURATION_TYPE} ${BUILD_OPTIONS} \"-G${CTEST_CMAKE_GENERATOR}\" \"${CTEST_CONFIGURE_TOOLSET}\" \"${CTEST_SOURCE_DIRECTORY}\""
+  )
+else ()
+  if (LOCAL_COVERAGE_TEST)
+    find_program (CTEST_COVERAGE_COMMAND NAMES gcov)
+  endif ()
+  set (CTEST_CONFIGURE_COMMAND
+      "${CTEST_CMAKE_COMMAND} -C \"${CTEST_SOURCE_DIRECTORY}/config/cmake/cacheinit.cmake\" -DCMAKE_BUILD_TYPE:STRING=${CTEST_CONFIGURATION_TYPE} ${BUILD_OPTIONS} \"-G${CTEST_CMAKE_GENERATOR}\" \"${CTEST_CONFIGURE_TOOLSET}\" \"${CTEST_SOURCE_DIRECTORY}\""
+  )
+endif ()
+
+#-----------------------------------------------------------------------------
+## -- set output to english
+set ($ENV{LC_MESSAGES}  "en_EN")
+
+# Print summary information.
+foreach (v
+    CTEST_SITE
+    CTEST_BUILD_NAME
+    CTEST_SOURCE_DIRECTORY
+    CTEST_BINARY_DIRECTORY
+    CTEST_CMAKE_GENERATOR
+    CTEST_CONFIGURATION_TYPE
+    CTEST_GIT_COMMAND
+    CTEST_CHECKOUT_COMMAND
+    CTEST_CONFIGURE_COMMAND
+    CTEST_SCRIPT_DIRECTORY
+    CTEST_USE_LAUNCHERS
+  )
+  set (vars "${vars}  ${v}=[${${v}}]\n")
+endforeach ()
+message (STATUS "Dashboard script configuration:\n${vars}\n")
+
+#-----------------------------------------------------------------------------
+#-----------------------------------------------------------------------------
+  ## NORMAL process
+  ## -- LOCAL_UPDATE updates the source folder from svn
+  ## -- LOCAL_SUBMIT reports to CDash server
+  ## -- LOCAL_SKIP_TEST skips the test process (only builds)
+  ## -- LOCAL_MEMCHECK_TEST executes the Valgrind testing
+  ## -- LOCAL_COVERAGE_TEST executes code coverage process
+  ## --------------------------
+  ctest_start (${MODEL} TRACK ${MODEL})
+  if (LOCAL_UPDATE)
+    ctest_update (SOURCE "${CTEST_SOURCE_DIRECTORY}")
+  endif ()
+  configure_file (${CTEST_SOURCE_DIRECTORY}/config/cmake/CTestCustom.cmake ${CTEST_BINARY_DIRECTORY}/CTestCustom.cmake)
+  ctest_read_custom_files ("${CTEST_BINARY_DIRECTORY}")
+  ctest_configure (BUILD "${CTEST_BINARY_DIRECTORY}" RETURN_VALUE res)
+  if (LOCAL_SUBMIT)
+    ctest_submit (PARTS Update Configure Notes)
+  endif ()
+  if (${res} LESS 0 OR ${res} GREATER 0)
+    file (APPEND ${CTEST_SCRIPT_DIRECTORY}/FailedCTest.txt "Failed Configure: ${res}\n")
+  endif ()
+
+  # On Cray XC40, configuring fails in the Fortran section when using the craype-mic-knl module.
+  # When the configure phase is done with the craype-haswell module and the build phase is done
+  # with the craype-mic-knl module, configure succeeds and tests pass on the knl compute nodes
+  # for Intel, Cray, GCC and Clang compilers.  If the variables aren't set or if not
+  # cross compiling, the module switch will not occur.
+  if (CMAKE_CROSSCOMPILING AND COMPILENODE_HWCOMPILE_MODULE AND COMPUTENODE_HWCOMPILE_MODULE)
+      execute_process (COMMAND module switch ${COMPILENODE_HWCOMPILE_MODULE} ${COMPUTENODE_HWCOMPILE_MODULE})
+  endif ()
+
+  ctest_build (BUILD "${CTEST_BINARY_DIRECTORY}" APPEND RETURN_VALUE res NUMBER_ERRORS errval)
+  if (LOCAL_SUBMIT)
+    ctest_submit (PARTS Build)
+  endif ()
+  if (${res} LESS 0 OR ${res} GREATER 0 OR ${errval} GREATER 0)
+    file (APPEND ${CTEST_SCRIPT_DIRECTORY}/FailedCTest.txt "Failed ${errval} Build: ${res}\n")
+  endif ()
+
+  if (NOT LOCAL_SKIP_TEST)
+    if (NOT LOCAL_MEMCHECK_TEST)
+      if (NOT LOCAL_BATCH_TEST)
+        ctest_test (BUILD "${CTEST_BINARY_DIRECTORY}" APPEND ${ctest_test_args} RETURN_VALUE res)
+      else ()
+        file(STRINGS ${CTEST_BINARY_DIRECTORY}/Testing/TAG TAG_CONTENTS REGEX "^2([0-9]+)[-]([0-9]+)$")
+        if (LOCAL_BATCH_SCRIPT_COMMAND STREQUAL "raybsub")
+          execute_process (COMMAND ${CTEST_BINARY_DIRECTORY}/${LOCAL_BATCH_SCRIPT_COMMAND} ${LOCAL_BATCH_SCRIPT_ARGS} ${CTEST_BINARY_DIRECTORY}/${LOCAL_BATCH_SCRIPT_NAME})
+        else ()
+          execute_process (COMMAND ${LOCAL_BATCH_SCRIPT_COMMAND} ${LOCAL_BATCH_SCRIPT_ARGS} ${CTEST_BINARY_DIRECTORY}/${LOCAL_BATCH_SCRIPT_NAME})
+        endif ()
+        message(STATUS "Check for existence of ${CTEST_BINARY_DIRECTORY}/Testing/${TAG_CONTENTS}/Test.xml")
+        execute_process(COMMAND ls ${CTEST_BINARY_DIRECTORY}/Testing/${TAG_CONTENTS}/Test.xml RESULT_VARIABLE result OUTPUT_QUIET ERROR_QUIET)
+        while(result)
+          ctest_sleep(60)
+          execute_process(COMMAND ls ${CTEST_BINARY_DIRECTORY}/Testing/${TAG_CONTENTS}/Test.xml RESULT_VARIABLE result OUTPUT_QUIET ERROR_QUIET)
+        endwhile(result)
+        if (LOCAL_BATCH_SCRIPT_PARALLEL_NAME)
+          if (LOCAL_SUBMIT)
+            ctest_submit (PARTS Test)
+          endif ()
+          message(STATUS "Found ${CTEST_BINARY_DIRECTORY}/Testing/${TAG_CONTENTS}/Test.xml for serial tests. Renaming to SerialTest.xml")
+          file (RENAME ${CTEST_BINARY_DIRECTORY}/Testing/${TAG_CONTENTS}/Test.xml ${CTEST_BINARY_DIRECTORY}/Testing/${TAG_CONTENTS}/SerialTest.xml)
+          file (RENAME ${CTEST_BINARY_DIRECTORY}/Testing/Temporary/LastTest_${TAG_CONTENTS}.log ${CTEST_BINARY_DIRECTORY}/Testing/Temporary/LastTest_${TAG_CONTENTS}_Serial.log)
+          unset(result CACHE)
+          if (LOCAL_BATCH_SCRIPT_COMMAND STREQUAL "raybsub")
+            execute_process (COMMAND ${CTEST_BINARY_DIRECTORY}/${LOCAL_BATCH_SCRIPT_COMMAND} ${LOCAL_BATCH_SCRIPT_ARGS} ${CTEST_BINARY_DIRECTORY}/${LOCAL_BATCH_SCRIPT_PARALLEL_NAME})
+          else ()
+            execute_process (COMMAND ${LOCAL_BATCH_SCRIPT_COMMAND} ${LOCAL_BATCH_SCRIPT_ARGS} ${CTEST_BINARY_DIRECTORY}/${LOCAL_BATCH_SCRIPT_PARALLEL_NAME})
+          endif ()
+          message(STATUS "Check for existence of ${CTEST_BINARY_DIRECTORY}/Testing/${TAG_CONTENTS}/Test.xml")
+          execute_process(COMMAND ls ${CTEST_BINARY_DIRECTORY}/Testing/${TAG_CONTENTS}/Test.xml RESULT_VARIABLE result OUTPUT_QUIET ERROR_QUIET)
+          while(result)
+            ctest_sleep(60)
+            execute_process(COMMAND ls ${CTEST_BINARY_DIRECTORY}/Testing/${TAG_CONTENTS}/Test.xml RESULT_VARIABLE result OUTPUT_QUIET ERROR_QUIET)
+          endwhile(result)
+          message(STATUS "Found ${CTEST_BINARY_DIRECTORY}/Testing/${TAG_CONTENTS}/Test.xml for parallel tests.")
+        endif()
+      endif ()
+      if (LOCAL_SUBMIT)
+        ctest_submit (PARTS Test)
+      endif ()
+      if (${res} LESS 0 OR ${res} GREATER 0)
+        file (APPEND ${CTEST_SCRIPT_DIRECTORY}/FailedCTest.txt "Failed Tests: ${res}\n")
+      endif ()
+    else ()
+      ctest_memcheck (BUILD "${CTEST_BINARY_DIRECTORY}" APPEND ${ctest_test_args})
+      if (LOCAL_SUBMIT)
+        ctest_submit (PARTS MemCheck)
+      endif ()
+    endif ()
+    if (LOCAL_COVERAGE_TEST)
+      ctest_coverage (BUILD "${CTEST_BINARY_DIRECTORY}" APPEND)
+      if (LOCAL_SUBMIT)
+        ctest_submit (PARTS Coverage)
+      endif ()
+    endif ()
+  endif ()
+
+  if (NOT LOCAL_MEMCHECK_TEST AND NOT LOCAL_NO_PACKAGE AND NOT LOCAL_SKIP_BUILD)
+    ##-----------------------------------------------
+    ## Package the product
+    ##-----------------------------------------------
+    execute_process (COMMAND cpack -C ${CTEST_CONFIGURATION_TYPE} -V
+      WORKING_DIRECTORY ${CTEST_BINARY_DIRECTORY}
+      RESULT_VARIABLE cpackResult
+      OUTPUT_VARIABLE cpackLog
+      ERROR_VARIABLE cpackLog.err
+    )
+    file (WRITE ${CTEST_BINARY_DIRECTORY}/cpack.log "${cpackLog.err}" "${cpackLog}")
+    if (cpackResult GREATER 0)
+      file (APPEND ${CTEST_SCRIPT_DIRECTORY}/FailedCTest.txt "Failed packaging: ${cpackResult}:${cpackLog.err} \n")
+    endif ()
+  endif ()
+#-----------------------------------------------------------------------------

config/cmake/scripts/HDF5config.cmake

@@ -9,232 +9,251 @@
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #
-#############################################################################################
-### ${CTEST_SCRIPT_ARG} is of the form OPTION=VALUE                                       ###
-### BUILD_GENERATOR required [Unix, VS2017, VS201764, VS2015, VS201564, VS2013, VS201364] ###
-### ctest -S HDF5config.cmake,BUILD_GENERATOR=VS201764 -C Release -VV -O hdf5.log         ###
-#############################################################################################
-
-cmake_minimum_required (VERSION 3.10)
-############################################################################
-# Usage:
-#     ctest -S HDF5config.cmake,OPTION=VALUE -C Release -VV -O test.log
-# where valid options for OPTION are:
-#     BUILD_GENERATOR - The cmake build generator:
-#            Unix      * Unix Makefiles
+#############################################################################################
+### ${CTEST_SCRIPT_ARG} is of the form OPTION=VALUE                                       ###
+### BUILD_GENERATOR required [Unix, VS2017, VS201764, VS2015, VS201564, VS2013, VS201364] ###
+### ctest -S HDF5config.cmake,BUILD_GENERATOR=VS201764 -C Release -VV -O hdf5.log         ###
+#############################################################################################
+
+cmake_minimum_required (VERSION 3.10)
+############################################################################
+# Usage:
+#     ctest -S HDF5config.cmake,OPTION=VALUE -C Release -VV -O test.log
+# where valid options for OPTION are:
+#     BUILD_GENERATOR - The cmake build generator:
+#            Unix      * Unix Makefiles
 #            VS2017    * Visual Studio 15 2017
 #            VS201764  * Visual Studio 15 2017 Win64
-#            VS2015    * Visual Studio 14 2015
-#            VS201564  * Visual Studio 14 2015 Win64
-#            VS2013    * Visual Studio 12 2013
-#            VS201364  * Visual Studio 12 2013 Win64
-#
-#     INSTALLDIR  -  root folder where hdf5 is installed
-#     CTEST_CONFIGURATION_TYPE  - Release, Debug, etc
-#     CTEST_SOURCE_NAME  -  source folder
-##############################################################################
-
-set (CTEST_SOURCE_VERSION "1.11.2")
-set (CTEST_SOURCE_VERSEXT "")
-
-##############################################################################
-# handle input parameters to script.
-#BUILD_GENERATOR - which CMake generator to use, required
-#INSTALLDIR - HDF5-1.10.0 root folder
-#CTEST_CONFIGURATION_TYPE - Release, Debug, RelWithDebInfo
-#CTEST_SOURCE_NAME - name of source folder; HDF5-1.10.0
-if (DEFINED CTEST_SCRIPT_ARG)
-    # transform ctest script arguments of the form
-    # script.ctest,var1=value1,var2=value2
-    # to variables with the respective names set to the respective values
-    string (REPLACE "," ";" script_args "${CTEST_SCRIPT_ARG}")
-    foreach (current_var ${script_args})
-        if ("${current_var}" MATCHES "^([^=]+)=(.+)$")
-            set ("${CMAKE_MATCH_1}" "${CMAKE_MATCH_2}")
-        endif ()
-    endforeach ()
-endif ()
-
-# build generator must be defined
-if (NOT DEFINED BUILD_GENERATOR)
-  message (FATAL_ERROR "BUILD_GENERATOR must be defined - Unix, VS2017, or VS201764, VS2015, VS201564, VS2013, VS201364")
-endif ()
-
-###################################################################
-### Following Line is one of [Release, RelWithDebInfo, Debug] #####
+#            VS2015    * Visual Studio 14 2015
+#            VS201564  * Visual Studio 14 2015 Win64
+#            VS2013    * Visual Studio 12 2013
+#            VS201364  * Visual Studio 12 2013 Win64
+#
+#     INSTALLDIR  -  root folder where hdf5 is installed
+#     CTEST_CONFIGURATION_TYPE  - Release, Debug, etc
+#     CTEST_SOURCE_NAME  -  source folder
+##############################################################################
+
+set (CTEST_SOURCE_VERSION "1.11.4")
+set (CTEST_SOURCE_VERSEXT "")
+
+##############################################################################
+# handle input parameters to script.
+#BUILD_GENERATOR - which CMake generator to use, required
+#INSTALLDIR - HDF5-1.10.0 root folder
+#CTEST_CONFIGURATION_TYPE - Release, Debug, RelWithDebInfo
+#CTEST_SOURCE_NAME - name of source folder; HDF5-1.10.0
+#MODEL - CDash group name
+#HPC - run alternate configurations for HPC machines; sbatch, bsub, raybsub
+#MPI - enable MPI;
+if (DEFINED CTEST_SCRIPT_ARG)
+    # transform ctest script arguments of the form
+    # script.ctest,var1=value1,var2=value2
+    # to variables with the respective names set to the respective values
+    string (REPLACE "," ";" script_args "${CTEST_SCRIPT_ARG}")
+    foreach (current_var ${script_args})
+        if ("${current_var}" MATCHES "^([^=]+)=(.+)$")
+            set ("${CMAKE_MATCH_1}" "${CMAKE_MATCH_2}")
+        endif ()
+    endforeach ()
+endif ()
+
+#HPC - run alternate configurations for HPC machines
+if (DEFINED HPC)
+  set (BUILD_GENERATOR "Unix")
+endif ()
+
+# build generator must be defined
+if (NOT DEFINED BUILD_GENERATOR)
+  message (FATAL_ERROR "BUILD_GENERATOR must be defined - Unix, VS2017, or VS201764, VS2015, VS201564, VS2013, VS201364")
+endif ()
+
+###################################################################
+### Following Line is one of [Release, RelWithDebInfo, Debug] #####
 ###        (default use command line -C value)
-set (CTEST_CONFIGURATION_TYPE "$ENV{CMAKE_CONFIG_TYPE}")
-###################################################################
-
-if (NOT DEFINED INSTALLDIR)
-  if (WIN32)
-    set (INSTALLDIR "C:/Program Files/HDF_Group/HDF5/${CTEST_SOURCE_VERSION}")
-  else ()
-    set (INSTALLDIR "${CTEST_SCRIPT_DIRECTORY}/HDF_Group/HDF5/${CTEST_SOURCE_VERSION}")
-  endif ()
-endif ()
-if (NOT DEFINED CTEST_CONFIGURATION_TYPE)
-  set (CTEST_CONFIGURATION_TYPE "Release")
-endif ()
-if (NOT DEFINED CTEST_SOURCE_NAME)
-  set (CTEST_SOURCE_NAME "hdf5-${CTEST_SOURCE_VERSION}${CTEST_SOURCE_VERSEXT}")
-endif ()
-
-set (CTEST_BINARY_NAME "build")
-set (CTEST_DASHBOARD_ROOT "${CTEST_SCRIPT_DIRECTORY}")
-if (WIN32)
-  set (CTEST_SOURCE_DIRECTORY "${CTEST_DASHBOARD_ROOT}\\${CTEST_SOURCE_NAME}")
-  set (CTEST_BINARY_DIRECTORY "${CTEST_DASHBOARD_ROOT}\\${CTEST_BINARY_NAME}")
-else ()
-  set (CTEST_SOURCE_DIRECTORY "${CTEST_DASHBOARD_ROOT}/${CTEST_SOURCE_NAME}")
-  set (CTEST_BINARY_DIRECTORY "${CTEST_DASHBOARD_ROOT}/${CTEST_BINARY_NAME}")
-endif ()
-
-###################################################################
-#########       Following describes compiler           ############
-if (WIN32)
-  set (SITE_OS_NAME "Windows")
-  set (SITE_OS_VERSION "WIN7")
-  if (${BUILD_GENERATOR} STREQUAL "VS201764")
-    set (CTEST_CMAKE_GENERATOR "Visual Studio 15 2017 Win64")
-    set (SITE_OS_BITS "64")
-    set (SITE_COMPILER_NAME "vs2017")
-    set (SITE_COMPILER_VERSION "15")
-  elseif (${BUILD_GENERATOR} STREQUAL "VS2017")
-    set (CTEST_CMAKE_GENERATOR "Visual Studio 15 2017")
-    set (SITE_OS_BITS "32")
-    set (SITE_COMPILER_NAME "vs2017")
-    set (SITE_COMPILER_VERSION "15")
-  elseif (${BUILD_GENERATOR} STREQUAL "VS201564")
-    set (CTEST_CMAKE_GENERATOR "Visual Studio 14 2015 Win64")
-    set (SITE_OS_BITS "64")
-    set (SITE_COMPILER_NAME "vs2015")
-    set (SITE_COMPILER_VERSION "14")
-  elseif (${BUILD_GENERATOR} STREQUAL "VS2015")
-    set (CTEST_CMAKE_GENERATOR "Visual Studio 14 2015")
-    set (SITE_OS_BITS "32")
-    set (SITE_COMPILER_NAME "vs2015")
-    set (SITE_COMPILER_VERSION "14")
-  elseif (${BUILD_GENERATOR} STREQUAL "VS201364")
-    set (CTEST_CMAKE_GENERATOR "Visual Studio 12 2013 Win64")
-    set (SITE_OS_BITS "64")
-    set (SITE_COMPILER_NAME "vs2013")
-    set (SITE_COMPILER_VERSION "12")
-  elseif (${BUILD_GENERATOR} STREQUAL "VS2013")
-    set (CTEST_CMAKE_GENERATOR "Visual Studio 12 2013")
-    set (SITE_OS_BITS "32")
-    set (SITE_COMPILER_NAME "vs2013")
-    set (SITE_COMPILER_VERSION "12")
-  elseif (${BUILD_GENERATOR} STREQUAL "VS201264")
-    set (CTEST_CMAKE_GENERATOR "Visual Studio 11 2012 Win64")
-    set (SITE_OS_BITS "64")
-    set (SITE_COMPILER_NAME "vs2012")
-    set (SITE_COMPILER_VERSION "11")
-  elseif (${BUILD_GENERATOR} STREQUAL "VS2012")
-    set (CTEST_CMAKE_GENERATOR "Visual Studio 11 2012")
-    set (SITE_OS_BITS "32")
-    set (SITE_COMPILER_NAME "vs2012")
-    set (SITE_COMPILER_VERSION "11")
+set (CTEST_CONFIGURATION_TYPE "$ENV{CMAKE_CONFIG_TYPE}")
+###################################################################
+
+if (NOT DEFINED INSTALLDIR)
+  if (WIN32)
+    set (INSTALLDIR "C:/Program Files/HDF_Group/HDF5/${CTEST_SOURCE_VERSION}")
   else ()
-    message (FATAL_ERROR "Invalid BUILD_GENERATOR must be - Unix, VS2017, or VS201764, VS2015, VS201564, VS2013, VS201364")
+    set (INSTALLDIR "${CTEST_SCRIPT_DIRECTORY}/HDF_Group/HDF5/${CTEST_SOURCE_VERSION}")
   endif ()
-##  Set the following to unique id your computer  ##
-  set (CTEST_SITE "WIN7${BUILD_GENERATOR}.XXXX")
-else ()
-  set (CTEST_CMAKE_GENERATOR "Unix Makefiles")
-##  Set the following to unique id your computer  ##
-  if (APPLE)
-    set (CTEST_SITE "MAC.XXXX")
-  else ()
-    set (CTEST_SITE "LINUX.XXXX")
-  endif ()
-  if (APPLE)
-    execute_process (COMMAND xcrun --find cc OUTPUT_VARIABLE XCODE_CC OUTPUT_STRIP_TRAILING_WHITESPACE)
-    execute_process (COMMAND xcrun --find c++ OUTPUT_VARIABLE XCODE_CXX OUTPUT_STRIP_TRAILING_WHITESPACE)
-    set (ENV{CC} "${XCODE_CC}")
-    set (ENV{CXX} "${XCODE_CXX}")
-    set (CTEST_USE_LAUNCHERS        1)
-    set (RR_WARNINGS_COMMON "-Wno-format-nonliteral -Wno-cast-align -Wno-unused -Wno-unused-variable -Wno-unused-function -Wno-self-assign -Wno-unused-parameter -Wno-sign-compare")
-    set (RR_WARNINGS_C "${RR_WARNINGS_COMMON} -Wno-deprecated-declarations -Wno-uninitialized")
-    set (RR_WARNINGS_CXX "${RR_WARNINGS_COMMON} -Woverloaded-virtual -Wshadow -Wwrite-strings -Wc++11-compat")
-    set (RR_FLAGS_COMMON "-g -O0 -fstack-protector-all -D_FORTIFY_SOURCE=2")
-    set (RR_FLAGS_C "${RR_FLAGS_COMMON}")
-    set (RR_FLAGS_CXX "${RR_FLAGS_COMMON}")
-    set (ENV{CFLAGS} "${RR_WARNINGS_C} ${RR_FLAGS_C}")
-    set (ENV{CXXFLAGS} "${RR_WARNINGS_CXX} ${RR_FLAGS_CXX}")
-  endif ()
-endif ()
-###################################################################
-
-###################################################################
-#########       Following is for submission to CDash   ############
-###################################################################
-set (MODEL "Experimental")
-###################################################################
-
-###################################################################
-#####       Following controls CDash submission               #####
-#set (LOCAL_SUBMIT "TRUE")
-#####       Following controls test process                   #####
-#set (LOCAL_SKIP_TEST "TRUE")
-#set (LOCAL_MEMCHECK_TEST "TRUE")
-#set (LOCAL_COVERAGE_TEST "TRUE")
-#####       Following controls cpack command                  #####
-#set (LOCAL_NO_PACKAGE "TRUE")
-#####       Following controls source update                  #####
-#set (LOCAL_UPDATE "TRUE")
-set (REPOSITORY_URL "https://git@bitbucket.hdfgroup.org/scm/hdffv/hdf5.git")
-set (REPOSITORY_BRANCH "develop")
-
-#uncomment to use a compressed source file: *.tar on linux or mac *.zip on windows
-#set(CTEST_USE_TAR_SOURCE "${CTEST_SOURCE_VERSION}")
-###################################################################
-
-
-###################################################################
-
-if (WIN32)
-  set (BINFILEBASE "HDF5-${CTEST_SOURCE_VERSION}${CTEST_SOURCE_VERSEXT}-win${SITE_OS_BITS}")
-  include (${CTEST_SCRIPT_DIRECTORY}\\HDF5options.cmake)
-  include (${CTEST_SCRIPT_DIRECTORY}\\CTestScript.cmake)
-  if (EXISTS "${CTEST_BINARY_DIRECTORY}\\${BINFILEBASE}.exe")
-    file (COPY "${CTEST_BINARY_DIRECTORY}\\${BINFILEBASE}.exe" DESTINATION ${CTEST_SCRIPT_DIRECTORY})
-  endif ()
-  if (EXISTS "${CTEST_BINARY_DIRECTORY}\\${BINFILEBASE}.msi")
-    file (COPY "${CTEST_BINARY_DIRECTORY}\\${BINFILEBASE}.msi" DESTINATION  ${CTEST_SCRIPT_DIRECTORY})
-  endif ()
-  if (EXISTS "${CTEST_BINARY_DIRECTORY}\\${BINFILEBASE}.zip")
-    file (COPY "${CTEST_BINARY_DIRECTORY}\\${BINFILEBASE}.zip" DESTINATION  ${CTEST_SCRIPT_DIRECTORY})
-  endif ()
-else ()
-  set (BINFILEBASE "HDF5-${CTEST_SOURCE_VERSION}${CTEST_SOURCE_VERSEXT}")
-  include (${CTEST_SCRIPT_DIRECTORY}/HDF5options.cmake)
-  include (${CTEST_SCRIPT_DIRECTORY}/CTestScript.cmake)
-  if (APPLE)
-    if (EXISTS "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-Darwin.dmg")
-      file (COPY "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-Darwin.dmg" DESTINATION ${CTEST_SCRIPT_DIRECTORY})
-    endif ()
-    if (EXISTS "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-Darwin.tar.gz")
-      file (COPY "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-Darwin.tar.gz" DESTINATION  ${CTEST_SCRIPT_DIRECTORY})
-    endif ()
-    if (EXISTS "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-Darwin.sh")
-      file (COPY "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-Darwin.sh" DESTINATION ${CTEST_SCRIPT_DIRECTORY})
-    endif ()
-  else ()
-    if (CYGWIN)
-      if (EXISTS "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-CYGWIN.sh")
-        file (COPY "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-CYGWIN.sh" DESTINATION ${CTEST_SCRIPT_DIRECTORY})
-      endif ()
-      if (EXISTS "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-CYGWIN.tar.gz")
-        file (COPY "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-CYGWIN.tar.gz" DESTINATION  ${CTEST_SCRIPT_DIRECTORY})
-      endif ()
-    else ()
-      if (EXISTS "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-Linux.sh")
-        file (COPY "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-Linux.sh" DESTINATION ${CTEST_SCRIPT_DIRECTORY})
-      endif ()
-      if (EXISTS "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-Linux.tar.gz")
-        file (COPY "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-Linux.tar.gz" DESTINATION  ${CTEST_SCRIPT_DIRECTORY})
-      endif ()
-    endif ()
-  endif ()
-endif ()
+endif ()
+if (NOT DEFINED CTEST_CONFIGURATION_TYPE)
+  set (CTEST_CONFIGURATION_TYPE "Release")
+endif ()
+if (NOT DEFINED CTEST_SOURCE_NAME)
+  set (CTEST_SOURCE_NAME "hdf5-${CTEST_SOURCE_VERSION}${CTEST_SOURCE_VERSEXT}")
+endif ()
+
+set (CTEST_BINARY_NAME "build")
+set (CTEST_DASHBOARD_ROOT "${CTEST_SCRIPT_DIRECTORY}")
+if (WIN32)
+  set (CTEST_SOURCE_DIRECTORY "${CTEST_DASHBOARD_ROOT}\\${CTEST_SOURCE_NAME}")
+  set (CTEST_BINARY_DIRECTORY "${CTEST_DASHBOARD_ROOT}\\${CTEST_BINARY_NAME}")
+else ()
+  set (CTEST_SOURCE_DIRECTORY "${CTEST_DASHBOARD_ROOT}/${CTEST_SOURCE_NAME}")
+  set (CTEST_BINARY_DIRECTORY "${CTEST_DASHBOARD_ROOT}/${CTEST_BINARY_NAME}")
+endif ()
+
+###################################################################
+#########       Following describes compiler           ############
+if (NOT DEFINED HPC)
+  if (NOT DEFINED BUILD_GENERATOR)
+    message (FATAL_ERROR "BUILD_GENERATOR must be defined - Unix, VS2017, or VS201764, VS2015, VS201564, VS2013, VS201364")
+  endif ()
+  if (WIN32)
+    set (SITE_OS_NAME "Windows")
+    set (SITE_OS_VERSION "WIN7")
+    if (BUILD_GENERATOR STREQUAL "VS201764")
+      set (CTEST_CMAKE_GENERATOR "Visual Studio 15 2017 Win64")
+      set (SITE_OS_BITS "64")
+      set (SITE_COMPILER_NAME "vs2017")
+      set (SITE_COMPILER_VERSION "15")
+    elseif (BUILD_GENERATOR STREQUAL "VS2017")
+      set (CTEST_CMAKE_GENERATOR "Visual Studio 15 2017")
+      set (SITE_OS_BITS "32")
+      set (SITE_COMPILER_NAME "vs2017")
+      set (SITE_COMPILER_VERSION "15")
+    elseif (BUILD_GENERATOR STREQUAL "VS201564")
+      set (CTEST_CMAKE_GENERATOR "Visual Studio 14 2015 Win64")
+      set (SITE_OS_BITS "64")
+      set (SITE_COMPILER_NAME "vs2015")
+      set (SITE_COMPILER_VERSION "14")
+    elseif (BUILD_GENERATOR STREQUAL "VS2015")
+      set (CTEST_CMAKE_GENERATOR "Visual Studio 14 2015")
+      set (SITE_OS_BITS "32")
+      set (SITE_COMPILER_NAME "vs2015")
+      set (SITE_COMPILER_VERSION "14")
+    elseif (BUILD_GENERATOR STREQUAL "VS201364")
+      set (CTEST_CMAKE_GENERATOR "Visual Studio 12 2013 Win64")
+      set (SITE_OS_BITS "64")
+      set (SITE_COMPILER_NAME "vs2013")
+      set (SITE_COMPILER_VERSION "12")
+    elseif (BUILD_GENERATOR STREQUAL "VS2013")
+      set (CTEST_CMAKE_GENERATOR "Visual Studio 12 2013")
+      set (SITE_OS_BITS "32")
+      set (SITE_COMPILER_NAME "vs2013")
+      set (SITE_COMPILER_VERSION "12")
+    elseif (BUILD_GENERATOR STREQUAL "VS201264")
+      set (CTEST_CMAKE_GENERATOR "Visual Studio 11 2012 Win64")
+      set (SITE_OS_BITS "64")
+      set (SITE_COMPILER_NAME "vs2012")
+      set (SITE_COMPILER_VERSION "11")
+    elseif (BUILD_GENERATOR STREQUAL "VS2012")
+      set (CTEST_CMAKE_GENERATOR "Visual Studio 11 2012")
+      set (SITE_OS_BITS "32")
+      set (SITE_COMPILER_NAME "vs2012")
+      set (SITE_COMPILER_VERSION "11")
+    else ()
+      message (FATAL_ERROR "Invalid BUILD_GENERATOR must be - Unix, VS2017, or VS201764, VS2015, VS201564, VS2013, VS201364")
+    endif ()
+  ##  Set the following to unique id your computer  ##
+    set (CTEST_SITE "WIN7${BUILD_GENERATOR}.XXXX")
+  else ()
+    set (CTEST_CMAKE_GENERATOR "Unix Makefiles")
+  ##  Set the following to unique id your computer  ##
+    if (APPLE)
+     set (CTEST_SITE "MAC.XXXX")
+    else ()
+      set (CTEST_SITE "LINUX.XXXX")
+    endif ()
+    if (APPLE)
+      execute_process (COMMAND xcrun --find cc OUTPUT_VARIABLE XCODE_CC OUTPUT_STRIP_TRAILING_WHITESPACE)
+      execute_process (COMMAND xcrun --find c++ OUTPUT_VARIABLE XCODE_CXX OUTPUT_STRIP_TRAILING_WHITESPACE)
+      set (ENV{CC} "${XCODE_CC}")
+      set (ENV{CXX} "${XCODE_CXX}")
+      set (CTEST_USE_LAUNCHERS        1)
+      set (RR_WARNINGS_COMMON "-Wno-format-nonliteral -Wno-cast-align -Wno-unused -Wno-unused-variable -Wno-unused-function -Wno-self-assign -Wno-unused-parameter -Wno-sign-compare")
+      set (RR_WARNINGS_C "${RR_WARNINGS_COMMON} -Wno-deprecated-declarations -Wno-uninitialized")
+      set (RR_WARNINGS_CXX "${RR_WARNINGS_COMMON} -Woverloaded-virtual -Wshadow -Wwrite-strings -Wc++11-compat")
+      set (RR_FLAGS_COMMON "-g -O0 -fstack-protector-all -D_FORTIFY_SOURCE=2")
+      set (RR_FLAGS_C "${RR_FLAGS_COMMON}")
+      set (RR_FLAGS_CXX "${RR_FLAGS_COMMON}")
+      set (ENV{CFLAGS} "${RR_WARNINGS_C} ${RR_FLAGS_C}")
+      set (ENV{CXXFLAGS} "${RR_WARNINGS_CXX} ${RR_FLAGS_CXX}")
+    endif ()
+  endif ()
+else ()
+  set (CTEST_CMAKE_GENERATOR "Unix Makefiles")
+  include (${CTEST_SOURCE_DIRECTORY}/config/cmake/scripts/HPC/${HPC}-HDF5options.cmake)
+endif ()
+###################################################################
+
+###################################################################
+#########       Following is for submission to CDash   ############
+###################################################################
+if (NOT DEFINED MODEL)
+  set (MODEL "Experimental")
+endif ()
+
+###################################################################
+
+###################################################################
+#####       Following controls CDash submission               #####
+#set (LOCAL_SUBMIT "TRUE")
+#####       Following controls test process                   #####
+#set (LOCAL_SKIP_TEST "TRUE")
+#set (LOCAL_MEMCHECK_TEST "TRUE")
+#set (LOCAL_COVERAGE_TEST "TRUE")
+#####       Following controls cpack command                  #####
+#set (LOCAL_NO_PACKAGE "TRUE")
+#####       Following controls source update                  #####
+#set (LOCAL_UPDATE "TRUE")
+set (REPOSITORY_URL "https://git@bitbucket.hdfgroup.org/scm/hdffv/hdf5.git")
+set (REPOSITORY_BRANCH "develop")
+
+#uncomment to use a compressed source file: *.tar on linux or mac *.zip on windows
+#set(CTEST_USE_TAR_SOURCE "${CTEST_SOURCE_VERSION}")
+###################################################################
+
+
+###################################################################
+
+if (WIN32)
+  set (BINFILEBASE "HDF5-${CTEST_SOURCE_VERSION}${CTEST_SOURCE_VERSEXT}-win${SITE_OS_BITS}")
+  include (${CTEST_SCRIPT_DIRECTORY}\\HDF5options.cmake)
+  include (${CTEST_SCRIPT_DIRECTORY}\\CTestScript.cmake)
+  if (EXISTS "${CTEST_BINARY_DIRECTORY}\\${BINFILEBASE}.exe")
+    file (COPY "${CTEST_BINARY_DIRECTORY}\\${BINFILEBASE}.exe" DESTINATION ${CTEST_SCRIPT_DIRECTORY})
+  endif ()
+  if (EXISTS "${CTEST_BINARY_DIRECTORY}\\${BINFILEBASE}.msi")
+    file (COPY "${CTEST_BINARY_DIRECTORY}\\${BINFILEBASE}.msi" DESTINATION  ${CTEST_SCRIPT_DIRECTORY})
+  endif ()
+  if (EXISTS "${CTEST_BINARY_DIRECTORY}\\${BINFILEBASE}.zip")
+    file (COPY "${CTEST_BINARY_DIRECTORY}\\${BINFILEBASE}.zip" DESTINATION  ${CTEST_SCRIPT_DIRECTORY})
+  endif ()
+else ()
+  set (BINFILEBASE "HDF5-${CTEST_SOURCE_VERSION}${CTEST_SOURCE_VERSEXT}")
+  include (${CTEST_SCRIPT_DIRECTORY}/HDF5options.cmake)
+  include (${CTEST_SCRIPT_DIRECTORY}/CTestScript.cmake)
+  if (APPLE)
+    if (EXISTS "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-Darwin.dmg")
+      file (COPY "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-Darwin.dmg" DESTINATION ${CTEST_SCRIPT_DIRECTORY})
+    endif ()
+    if (EXISTS "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-Darwin.tar.gz")
+      file (COPY "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-Darwin.tar.gz" DESTINATION  ${CTEST_SCRIPT_DIRECTORY})
+    endif ()
+    if (EXISTS "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-Darwin.sh")
+      file (COPY "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-Darwin.sh" DESTINATION ${CTEST_SCRIPT_DIRECTORY})
+    endif ()
+  else ()
+    if (CYGWIN)
+      if (EXISTS "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-CYGWIN.sh")
+        file (COPY "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-CYGWIN.sh" DESTINATION ${CTEST_SCRIPT_DIRECTORY})
+      endif ()
+      if (EXISTS "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-CYGWIN.tar.gz")
+        file (COPY "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-CYGWIN.tar.gz" DESTINATION  ${CTEST_SCRIPT_DIRECTORY})
+      endif ()
+    else ()
+      if (EXISTS "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-Linux.sh")
+        file (COPY "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-Linux.sh" DESTINATION ${CTEST_SCRIPT_DIRECTORY})
+      endif ()
+      if (EXISTS "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-Linux.tar.gz")
+        file (COPY "${CTEST_BINARY_DIRECTORY}/${BINFILEBASE}-Linux.tar.gz" DESTINATION  ${CTEST_SCRIPT_DIRECTORY})
+      endif ()
+    endif ()
+  endif ()
+endif ()

config/cmake/scripts/HDF5options.cmake

@@ -16,9 +16,13 @@
 
 ### uncomment/comment and change the following lines for other configuration options
 
+#############################################################################################
+####      maximum parallel processor count for build and test       ####
+#set (MAX_PROC_COUNT 8)
+
 #############################################################################################
 ####      alternate toolsets       ####
-#set(CMAKE_GENERATOR_TOOLSET "Intel C++ Compiler 17.0")
+#set (CMAKE_GENERATOR_TOOLSET "Intel C++ Compiler 17.0")
 
 #############################################################################################
 ####      Only build static libraries       ####
@@ -29,12 +33,8 @@
 #############################################################################################
 ####      fortran enabled      ####
 #set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_FORTRAN:BOOL=ON")
-    ### enable Fortran 2003 depends on HDF5_BUILD_FORTRAN
-#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_F2003:BOOL=ON")
 ####      fortran disabled      ####
 set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_FORTRAN:BOOL=OFF")
-    ### enable Fortran 2003 depends on HDF5_BUILD_FORTRAN
-set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_F2003:BOOL=OFF")
 
 #############################################################################################
 ####      java enabled      ####
@@ -50,29 +50,55 @@ set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DCMAKE_INSTALL_PREFIX:PATH=${INSTA
 ####      ext libraries       ####
 
 ### ext libs from tgz
-set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ALLOW_EXTERNAL_SUPPORT:STRING=TGZ -DTGZPATH:PATH=${CTEST_SCRIPT_DIRECTORY}")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ALLOW_EXTERNAL_SUPPORT:STRING=TGZ -DTGZPATH:PATH=${CTEST_SCRIPT_DIRECTORY}")
 ### ext libs from git
-#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ALLOW_EXTERNAL_SUPPORT:STRING=GIT")
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ALLOW_EXTERNAL_SUPPORT:STRING=GIT")
 ### ext libs on system
-#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DZLIB_LIBRARY:FILEPATH=some_location/lib/zlib.lib -DZLIB_INCLUDE_DIR:PATH=some_location/include")
-#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DSZIP_LIBRARY:FILEPATH=some_location/lib/szlib.lib -DSZIP_INCLUDE_DIR:PATH=some_location/include")
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ALLOW_EXTERNAL_SUPPORT:STRING=NO")
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DZLIB_LIBRARY:FILEPATH=some_location/lib/zlib.lib -DZLIB_INCLUDE_DIR:PATH=some_location/include")
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DSZIP_LIBRARY:FILEPATH=some_location/lib/szlib.lib -DSZIP_INCLUDE_DIR:PATH=some_location/include")
 
-### disable ext zlib building
-#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_Z_LIB_SUPPORT:BOOL=OFF")
-### disable ext szip building
-#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_SZIP_SUPPORT:BOOL=OFF")
-#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_SZIP_ENCODING:BOOL=OFF")
+### disable using ext zlib
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_Z_LIB_SUPPORT:BOOL=OFF")
+### disable using ext szip
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_SZIP_SUPPORT:BOOL=OFF")
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_SZIP_ENCODING:BOOL=OFF")
+
+####      package examples       ####
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_PACK_EXAMPLES:BOOL=ON -DHDF5_EXAMPLES_COMPRESSED:STRING=HDF5Examples-1.12.4-Source.tar.gz -DHDF5_EXAMPLES_COMPRESSED_DIR:PATH=${CTEST_SCRIPT_DIRECTORY}")
+
+#############################################################################################
+### enable parallel builds
+
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_PARALLEL:BOOL=ON")
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_CPP_LIB:BOOL=OFF")
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_JAVA:BOOL=OFF")
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_THREADSAFE:BOOL=OFF")
+
+#############################################################################################
+### enable thread-safety builds
+
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_THREADSAFE:BOOL=ON")
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_PARALLEL:BOOL=OFF")
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_CPP_LIB:BOOL=OFF")
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_FORTRAN:BOOL=OFF")
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_HL_LIB:BOOL=OFF")
 
 #############################################################################################
 ### disable test program builds
 
-#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DBUILD_TESTING:BOOL=OFF")
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DBUILD_TESTING:BOOL=OFF")
 
 #############################################################################################
 ### disable packaging
 
-#set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_NO_PACKAGES:BOOL=ON")
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_NO_PACKAGES:BOOL=ON")
 ### Create install package with external libraries (szip, zlib)
-set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_PACKAGE_EXTLIBS:BOOL=ON")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_PACKAGE_EXTLIBS:BOOL=ON")
+
+#############################################################################################
+### use a toolchain file
+
+#set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DCMAKE_TOOLCHAIN_FILE:STRING=config/toolchain/intel.cmake")
 
 #############################################################################################

config/cmake/scripts/HPC/bsub-HDF5options.cmake

@@ -0,0 +1,40 @@
+#
+# Copyright by The HDF Group.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the COPYING file, which can be found at the root of the source code
+# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# If you do not have access to either file, you may request a copy from
+# help@hdfgroup.org.
+#
+#############################################################################################
+####  Change default configuration of options in config/cmake/cacheinit.cmake file        ###
+####  format: set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DXXX:YY=ZZZZ")                 ###
+#############################################################################################
+
+### uncomment/comment and change the following lines for other configuration options
+
+#############################################################################################
+### enable parallel builds
+if (DEFINED MPI)
+  # maximum parallel processor count for build and test       ####
+  set (MAX_PROC_COUNT 8)
+  set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_PARALLEL:BOOL=ON")
+  set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_CPP_LIB:BOOL=OFF")
+  set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_JAVA:BOOL=OFF")
+  set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_THREADSAFE:BOOL=OFF")
+endif ()
+#############################################################################################
+### options to run test scripts in batch commands
+set (LOCAL_BATCH_SCRIPT_COMMAND "bsub")
+set (LOCAL_BATCH_TEST "TRUE")
+set (LOCAL_BATCH_SCRIPT_NAME "ctestS.lsf")
+set (LOCAL_BATCH_SCRIPT_PARALLEL_NAME "ctestP.lsf")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLOCAL_BATCH_TEST:BOOL=ON")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLOCAL_BATCH_SCRIPT_NAME:STRING=${LOCAL_BATCH_SCRIPT_NAME}")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLOCAL_BATCH_SCRIPT_PARALLEL_NAME:STRING=${LOCAL_BATCH_SCRIPT_PARALLEL_NAME}")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_EXECUTABLE:STRING=srun")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_NUMPROC_FLAG:STRING=-n")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_MAX_NUMPROCS:STRING=6")

config/cmake/scripts/HPC/raybsub-HDF5options.cmake

@@ -0,0 +1,41 @@
+#
+# Copyright by The HDF Group.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the COPYING file, which can be found at the root of the source code
+# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# If you do not have access to either file, you may request a copy from
+# help@hdfgroup.org.
+#
+#############################################################################################
+####  Change default configuration of options in config/cmake/cacheinit.cmake file        ###
+####  format: set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DXXX:YY=ZZZZ")                 ###
+#############################################################################################
+
+### uncomment/comment and change the following lines for other configuration options
+
+#############################################################################################
+### enable parallel builds
+if (DEFINED MPI)
+  # maximum parallel processor count for build and test       ####
+  set (MAX_PROC_COUNT 8)
+  set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_PARALLEL:BOOL=ON")
+  set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_CPP_LIB:BOOL=OFF")
+  set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_JAVA:BOOL=OFF")
+  set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_THREADSAFE:BOOL=OFF")
+endif ()
+#############################################################################################
+### options to run test scripts in batch commands
+set (LOCAL_BATCH_SCRIPT_COMMAND "raybsub")
+set (LOCAL_BATCH_TEST "TRUE")
+set (LOCAL_BATCH_SCRIPT_NAME "ray_ctestS.lsf")
+set (LOCAL_BATCH_SCRIPT_PARALLEL_NAME "ray_ctestP.lsf")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLOCAL_BATCH_TEST:BOOL=ON")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLOCAL_BATCH_SCRIPT_COMMAND:STRING=${LOCAL_BATCH_SCRIPT_COMMAND}")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLOCAL_BATCH_SCRIPT_NAME:STRING=${LOCAL_BATCH_SCRIPT_NAME}")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLOCAL_BATCH_SCRIPT_PARALLEL_NAME:STRING=${LOCAL_BATCH_SCRIPT_PARALLEL_NAME}")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_EXECUTABLE:STRING=mpirun")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_NUMPROC_FLAG:STRING=-np")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_MAX_NUMPROCS:STRING=6")

config/cmake/scripts/HPC/sbatch-HDF5options.cmake

@@ -0,0 +1,52 @@
+#
+# Copyright by The HDF Group.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the COPYING file, which can be found at the root of the source code
+# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# If you do not have access to either file, you may request a copy from
+# help@hdfgroup.org.
+#
+#############################################################################################
+####  Change default configuration of options in config/cmake/cacheinit.cmake file        ###
+####  format: set(ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DXXX:YY=ZZZZ")                 ###
+#############################################################################################
+
+### uncomment/comment and change the following lines for other configuration options
+
+#############################################################################################
+### enable parallel builds
+if (DEFINED MPI)
+  # maximum parallel processor count for build and test       ####
+  set (MAX_PROC_COUNT 8)
+  set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_PARALLEL:BOOL=ON")
+  set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_CPP_LIB:BOOL=OFF")
+  set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_BUILD_JAVA:BOOL=OFF")
+  set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DHDF5_ENABLE_THREADSAFE:BOOL=OFF")
+endif ()
+#############################################################################################
+### options to run test scripts in batch commands
+if (DEFINED KNL)
+  ### some additions and alternatives to cross compile on haswell for knl
+  set (COMPILENODE_HWCOMPILE_MODULE "craype-haswell")
+  set (COMPUTENODE_HWCOMPILE_MODULE "craype-mic-knl")
+  set (LOCAL_BATCH_SCRIPT_NAME "knl_ctestS.sl")
+  set (LOCAL_BATCH_SCRIPT_PARALLEL_NAME "knl_ctestP.sl")
+  set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DCMAKE_TOOLCHAIN_FILE:STRING=config/toolchain/crayle.cmake")
+else ()
+  set (LOCAL_BATCH_SCRIPT_NAME "ctestS.sl")
+  set (LOCAL_BATCH_SCRIPT_PARALLEL_NAME "ctestP.sl")
+endif ()
+set (LOCAL_BATCH_SCRIPT_COMMAND "sbatch")
+set (LOCAL_BATCH_TEST "TRUE")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLOCAL_BATCH_TEST:BOOL=ON")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLOCAL_BATCH_SCRIPT_NAME:STRING=${LOCAL_BATCH_SCRIPT_NAME}")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DLOCAL_BATCH_SCRIPT_PARALLEL_NAME:STRING=${LOCAL_BATCH_SCRIPT_PARALLEL_NAME}")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_EXECUTABLE:STRING=srun")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_NUMPROC_FLAG:STRING=-n")
+set (ADD_BUILD_OPTIONS "${ADD_BUILD_OPTIONS} -DMPIEXEC_MAX_NUMPROCS:STRING=6")
+
+#############################################################################################
+#############################################################################################

config/cmake/userblockTest.cmake

@@ -62,7 +62,7 @@ if (TEST_CHECKUB STREQUAL "YES")
         OUTPUT_VARIABLE TEST_OUT
         ERROR_VARIABLE TEST_ERROR
     )
-    if (NOT ${TEST_RESULT} STREQUAL "0")
+    if (TEST_RESULT)
       message (FATAL_ERROR "Failed: The output of ${TEST_PROGRAM} ${TEST_OFILE} is: ${TEST_ERROR}")
     endif ()
     file (READ ${TEST_HFILE}.len.txt TEST_O_STRING_LEN)
@@ -70,7 +70,7 @@ if (TEST_CHECKUB STREQUAL "YES")
 
   math( EXPR TEST_STRING_SIZE "${TEST_U_STRING_LEN} + ${TEST_O_STRING_LEN}" )
 
-  if (NOT TEST_O_STRING_LEN STREQUAL "0")
+  if (TEST_O_STRING_LEN)
     #$JAM_BIN/getub -c $s2 $origfile > $cmpfile
     EXECUTE_PROCESS (
         COMMAND ${TEST_GET_PROGRAM} -c ${TEST_O_STRING_LEN} ${TEST_OFILE}
@@ -108,7 +108,7 @@ if (TEST_CHECKUB STREQUAL "YES")
 
   message (STATUS "COMPARE Result: ${TEST_RESULT}: ${TEST_STRING_SIZE}=${TEST_U_STRING_LEN}+${TEST_O_STRING_LEN}")
   # if the return value is !=${TEST_EXPECT} bail out
-  if (NOT ${TEST_RESULT} STREQUAL ${TEST_EXPECT})
+  if (NOT TEST_RESULT EQUAL TEST_EXPECT)
     message (FATAL_ERROR "Failed: The output of ${TEST_HFILE}-ub did not match ${TEST_HFILE}.\n${TEST_ERROR}")
   endif ()
 else ()
@@ -121,7 +121,7 @@ else ()
         OUTPUT_VARIABLE TEST_OUT
         ERROR_VARIABLE TEST_ERROR
     )
-  if (NOT TEST_H_STRING_LEN STREQUAL "0")
+  if (TEST_H_STRING_LEN)
     message (FATAL_ERROR "Failed: The output of ${TEST_HFILE} was NOT empty")
   endif ()
 endif ()

config/cmake/vfdTest.cmake

@@ -32,9 +32,9 @@ if (EXISTS ${TEST_FOLDER}/${TEST_OUTPUT}.err)
 endif ()
 
 # if there is not an error reference file add the error output to the stdout file
-if (NOT TEST_ERRREF)
-  set (ERROR_APPEND 1)
-endif ()
+#if (NOT TEST_ERRREF)
+#  set (ERROR_APPEND 1)
+#endif ()
 
 message (STATUS "USING ${TEST_VFD} ON COMMAND: ${TEST_PROGRAM} ${TEST_ARGS}")
 
@@ -60,7 +60,7 @@ if (ERROR_APPEND AND EXISTS ${TEST_FOLDER}/${TEST_OUTPUT}_${TEST_VFD}.err)
 endif ()
 
 # if the return value is !=${TEST_EXPECT} bail out
-if (NOT "${TEST_RESULT}" STREQUAL "${TEST_EXPECT}")
+if (NOT TEST_RESULT EQUAL TEST_EXPECT)
   if (NOT TEST_NOERRDISPLAY)
     if (EXISTS ${TEST_FOLDER}/${TEST_OUTPUT}_${TEST_VFD}.out)
       file (READ ${TEST_FOLDER}/${TEST_OUTPUT}_${TEST_VFD}.out TEST_STREAM)

config/cmake/volTest.cmake

@@ -0,0 +1,76 @@
+#
+# Copyright by The HDF Group.
+# All rights reserved.
+#
+# This file is part of HDF5.  The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the COPYING file, which can be found at the root of the source code
+# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# If you do not have access to either file, you may request a copy from
+# help@hdfgroup.org.
+#
+# volTest.cmake executes a command and captures the output in a file. Command uses specified VOL.
+# Exit status of command can also be compared.
+
+# arguments checking
+if (NOT TEST_PROGRAM)
+  message (FATAL_ERROR "Require TEST_PROGRAM to be defined")
+endif ()
+if (NOT TEST_FOLDER)
+  message ( FATAL_ERROR "Require TEST_FOLDER to be defined")
+endif ()
+if (NOT TEST_VOL)
+  message (FATAL_ERROR "Require TEST_VOL to be defined")
+endif ()
+
+if (EXISTS ${TEST_FOLDER}/${TEST_OUTPUT})
+  file (REMOVE ${TEST_FOLDER}/${TEST_OUTPUT})
+endif ()
+
+if (EXISTS ${TEST_FOLDER}/${TEST_OUTPUT}.err)
+  file (REMOVE ${TEST_FOLDER}/${TEST_OUTPUT}.err)
+endif ()
+
+# if there is not an error reference file add the error output to the stdout file
+#if (NOT TEST_ERRREF)
+#  set (ERROR_APPEND 1)
+#endif ()
+
+message (STATUS "USING ${TEST_VOL} ON COMMAND: ${TEST_PROGRAM} ${TEST_ARGS}")
+
+set (ENV{HDF5_VOL_CONNECTOR} "${TEST_VOL}")
+
+# run the test program, capture the stdout/stderr and the result var
+execute_process (
+    COMMAND ${TEST_PROGRAM} ${TEST_ARGS}
+    WORKING_DIRECTORY ${TEST_FOLDER}
+    RESULT_VARIABLE TEST_RESULT
+    OUTPUT_FILE ${TEST_OUTPUT}.out
+    ERROR_FILE ${TEST_OUTPUT}.err
+    OUTPUT_VARIABLE TEST_OUT
+    ERROR_VARIABLE TEST_ERROR
+)
+
+message (STATUS "COMMAND Result: ${TEST_RESULT}")
+
+# if the .err file exists and ERRROR_APPEND is enabled
+if (ERROR_APPEND AND EXISTS ${TEST_FOLDER}/${TEST_OUTPUT}.err)
+  file (READ ${TEST_FOLDER}/${TEST_OUTPUT}.err TEST_STREAM)
+  file (APPEND ${TEST_FOLDER}/${TEST_OUTPUT}.out "${TEST_STREAM}")
+endif ()
+
+# if the return value is !=${TEST_EXPECT} bail out
+if (NOT TEST_RESULT EQUAL TEST_EXPECT)
+  if (NOT TEST_NOERRDISPLAY)
+    if (EXISTS ${TEST_FOLDER}/${TEST_OUTPUT}.out)
+      file (READ ${TEST_FOLDER}/${TEST_OUTPUT}.out TEST_STREAM)
+    message (STATUS "Output USING ${TEST_VOL}:\n${TEST_STREAM}")
+    endif ()
+  endif ()
+  message (FATAL_ERROR "Failed: Test program ${TEST_PROGRAM} exited != ${TEST_EXPECT}.\n${TEST_ERROR}")
+endif ()
+
+message (STATUS "COMMAND Error: ${TEST_ERROR}")
+
+# everything went fine...
+message ("Passed: The ${TEST_PROGRAM} program used vol ${TEST_VOL}")

config/cmake/wait_H5Tinit.cmake

@@ -0,0 +1,11 @@
+cmake_minimum_required (VERSION 3.10)
+
+message(STATUS "Check for existence of ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c")
+execute_process(COMMAND ls ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c RESULT_VARIABLE H5TI_result OUTPUT_QUIET ERROR_QUIET)
+while(H5TI_result)
+  ctest_sleep(30)
+  message(STATUS "Checking again for existence of ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c")
+  execute_process(COMMAND ls ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c RESULT_VARIABLE H5TI_result OUTPUT_QUIET ERROR_QUIET)
+endwhile(H5TI_result)
+file (TOUCH "${HDF5_BINARY_DIR}/H5Tinit_created")
+message(STATUS "Found ${HDF5_GENERATED_SOURCE_DIR}/H5Tinit.c")

config/cmake_ext_mod/ConfigureChecks.cmake

@@ -70,7 +70,7 @@ if (WIN32)
     set (CMAKE_REQUIRED_FLAGS "-DWIN32_LEAN_AND_MEAN=1 -DNOGDI=1")
   endif ()
   set (${HDF_PREFIX}_HAVE_WIN32_API 1)
-  set (CMAKE_REQUIRED_LIBRARIES "ws2_32.lib;wsock32.lib")
+  set (HDF5_REQUIRED_LIBRARIES "ws2_32.lib;wsock32.lib")
   if (NOT UNIX AND NOT MINGW)
     set (WINDOWS 1)
     set (CMAKE_REQUIRED_FLAGS "/DWIN32_LEAN_AND_MEAN=1 /DNOGDI=1")
@@ -109,88 +109,10 @@ endif ()
 # END of WINDOWS Hard code Values
 # ----------------------------------------------------------------------
 
-if (CYGWIN)
-  set (${HDF_PREFIX}_HAVE_LSEEK64 0)
-endif ()
-
-#-----------------------------------------------------------------------------
-#  Check for the math library "m"
-#-----------------------------------------------------------------------------
-if (NOT WINDOWS)
-  CHECK_LIBRARY_EXISTS_CONCAT ("m" ceil     ${HDF_PREFIX}_HAVE_LIBM)
-  CHECK_LIBRARY_EXISTS_CONCAT ("dl" dlopen     ${HDF_PREFIX}_HAVE_LIBDL)
-  CHECK_LIBRARY_EXISTS_CONCAT ("ws2_32" WSAStartup  ${HDF_PREFIX}_HAVE_LIBWS2_32)
-  CHECK_LIBRARY_EXISTS_CONCAT ("wsock32" gethostbyname ${HDF_PREFIX}_HAVE_LIBWSOCK32)
-endif ()
-
-# UCB (BSD) compatibility library
-CHECK_LIBRARY_EXISTS_CONCAT ("ucb"    gethostname  ${HDF_PREFIX}_HAVE_LIBUCB)
-
-# For other tests to use the same libraries
-set (CMAKE_REQUIRED_LIBRARIES ${CMAKE_REQUIRED_LIBRARIES} ${LINK_LIBS})
-
-set (USE_INCLUDES "")
-if (WINDOWS)
-  set (USE_INCLUDES ${USE_INCLUDES} "windows.h")
-endif ()
-
 if (NOT WINDOWS)
   TEST_BIG_ENDIAN (${HDF_PREFIX}_WORDS_BIGENDIAN)
 endif ()
 
-# For other specific tests, use this MACRO.
-macro (HDF_FUNCTION_TEST OTHER_TEST)
-  if (NOT DEFINED ${HDF_PREFIX}_${OTHER_TEST})
-    set (MACRO_CHECK_FUNCTION_DEFINITIONS "-D${OTHER_TEST} ${CMAKE_REQUIRED_FLAGS}")
-    set (OTHER_TEST_ADD_LIBRARIES)
-    if (CMAKE_REQUIRED_LIBRARIES)
-      set (OTHER_TEST_ADD_LIBRARIES "-DLINK_LIBRARIES:STRING=${CMAKE_REQUIRED_LIBRARIES}")
-    endif ()
-
-    foreach (def
-        HAVE_SYS_TIME_H
-        HAVE_UNISTD_H
-        HAVE_SYS_TYPES_H
-        HAVE_SYS_SOCKET_H
-    )
-      if ("${${HDF_PREFIX}_${def}}")
-        set (MACRO_CHECK_FUNCTION_DEFINITIONS "${MACRO_CHECK_FUNCTION_DEFINITIONS} -D${def}")
-      endif ()
-    endforeach ()
-
-    if (LARGEFILE)
-      set (MACRO_CHECK_FUNCTION_DEFINITIONS
-          "${MACRO_CHECK_FUNCTION_DEFINITIONS} -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE"
-      )
-    endif ()
-
-    #message (STATUS "Performing ${OTHER_TEST}")
-    TRY_COMPILE (${OTHER_TEST}
-        ${CMAKE_BINARY_DIR}
-        ${HDF_RESOURCES_EXT_DIR}/HDFTests.c
-        CMAKE_FLAGS -DCOMPILE_DEFINITIONS:STRING=${MACRO_CHECK_FUNCTION_DEFINITIONS}
-        "${OTHER_TEST_ADD_LIBRARIES}"
-        OUTPUT_VARIABLE OUTPUT
-    )
-    if (${OTHER_TEST})
-      set (${HDF_PREFIX}_${OTHER_TEST} 1 CACHE INTERNAL "Other test ${FUNCTION}")
-      message (STATUS "Performing Other Test ${OTHER_TEST} - Success")
-    else ()
-      message (STATUS "Performing Other Test ${OTHER_TEST} - Failed")
-      set (${HDF_PREFIX}_${OTHER_TEST} "" CACHE INTERNAL "Other test ${FUNCTION}")
-      file (APPEND ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/CMakeError.log
-          "Performing Other Test ${OTHER_TEST} failed with the following output:\n"
-          "${OUTPUT}\n"
-      )
-    endif ()
-  endif ()
-endmacro ()
-
-#-----------------------------------------------------------------------------
-# Check for these functions before the time headers are checked
-#-----------------------------------------------------------------------------
-HDF_FUNCTION_TEST (STDC_HEADERS)
-
 #-----------------------------------------------------------------------------
 # Check IF header file exists and add it to the list.
 #-----------------------------------------------------------------------------
@@ -247,6 +169,91 @@ CHECK_INCLUDE_FILE_CONCAT ("memory.h"        ${HDF_PREFIX}_HAVE_MEMORY_H)
 CHECK_INCLUDE_FILE_CONCAT ("dlfcn.h"         ${HDF_PREFIX}_HAVE_DLFCN_H)
 CHECK_INCLUDE_FILE_CONCAT ("inttypes.h"      ${HDF_PREFIX}_HAVE_INTTYPES_H)
 CHECK_INCLUDE_FILE_CONCAT ("netinet/in.h"    ${HDF_PREFIX}_HAVE_NETINET_IN_H)
+# _Bool type support
+CHECK_INCLUDE_FILE_CONCAT (stdbool.h    ${HDF_PREFIX}_HAVE_STDBOOL_H)
+
+## Check for non-standard extenstion quadmath.h
+
+CHECK_INCLUDE_FILES(quadmath.h C_HAVE_QUADMATH)
+if (${C_HAVE_QUADMATH})
+  set(${HDF_PREFIX}_HAVE_QUADMATH_H 1)
+else ()
+  set(${HDF_PREFIX}_HAVE_QUADMATH_H 0)
+endif ()
+
+if (CYGWIN)
+  set (${HDF_PREFIX}_HAVE_LSEEK64 0)
+endif ()
+
+#-----------------------------------------------------------------------------
+#  Check for the math library "m"
+#-----------------------------------------------------------------------------
+if (NOT WINDOWS)
+  CHECK_LIBRARY_EXISTS_CONCAT ("m" ceil     ${HDF_PREFIX}_HAVE_LIBM)
+  CHECK_LIBRARY_EXISTS_CONCAT ("dl" dlopen     ${HDF_PREFIX}_HAVE_LIBDL)
+  CHECK_LIBRARY_EXISTS_CONCAT ("ws2_32" WSAStartup  ${HDF_PREFIX}_HAVE_LIBWS2_32)
+  CHECK_LIBRARY_EXISTS_CONCAT ("wsock32" gethostbyname ${HDF_PREFIX}_HAVE_LIBWSOCK32)
+endif ()
+
+# UCB (BSD) compatibility library
+CHECK_LIBRARY_EXISTS_CONCAT ("ucb"    gethostname  ${HDF_PREFIX}_HAVE_LIBUCB)
+
+# For other tests to use the same libraries
+set (HDF5_REQUIRED_LIBRARIES ${HDF5_REQUIRED_LIBRARIES} ${LINK_LIBS})
+
+set (USE_INCLUDES "")
+if (WINDOWS)
+  set (USE_INCLUDES ${USE_INCLUDES} "windows.h")
+endif ()
+
+# For other specific tests, use this MACRO.
+macro (HDF_FUNCTION_TEST OTHER_TEST)
+  if (NOT DEFINED ${HDF_PREFIX}_${OTHER_TEST})
+    set (MACRO_CHECK_FUNCTION_DEFINITIONS "-D${OTHER_TEST} ${CMAKE_REQUIRED_FLAGS}")
+
+    foreach (def
+        HAVE_SYS_TIME_H
+        HAVE_UNISTD_H
+        HAVE_SYS_TYPES_H
+        HAVE_SYS_SOCKET_H
+    )
+      if ("${${HDF_PREFIX}_${def}}")
+        set (MACRO_CHECK_FUNCTION_DEFINITIONS "${MACRO_CHECK_FUNCTION_DEFINITIONS} -D${def}")
+      endif ()
+    endforeach ()
+
+    if (LARGEFILE)
+      set (MACRO_CHECK_FUNCTION_DEFINITIONS
+          "${MACRO_CHECK_FUNCTION_DEFINITIONS} -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE"
+      )
+    endif ()
+
+    #message (STATUS "Performing ${OTHER_TEST}")
+    try_compile (${OTHER_TEST}
+        ${CMAKE_BINARY_DIR}
+        ${HDF_RESOURCES_EXT_DIR}/HDFTests.c
+        COMPILE_DEFINITIONS "${MACRO_CHECK_FUNCTION_DEFINITIONS}"
+        LINK_LIBRARIES "${HDF5_REQUIRED_LIBRARIES}"
+        OUTPUT_VARIABLE OUTPUT
+    )
+    if (${OTHER_TEST})
+      set (${HDF_PREFIX}_${OTHER_TEST} 1 CACHE INTERNAL "Other test ${FUNCTION}")
+      message (STATUS "Performing Other Test ${OTHER_TEST} - Success")
+    else ()
+      message (STATUS "Performing Other Test ${OTHER_TEST} - Failed")
+      set (${HDF_PREFIX}_${OTHER_TEST} "" CACHE INTERNAL "Other test ${FUNCTION}")
+      file (APPEND ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/CMakeError.log
+          "Performing Other Test ${OTHER_TEST} failed with the following output:\n"
+          "${OUTPUT}\n"
+      )
+    endif ()
+  endif ()
+endmacro ()
+
+#-----------------------------------------------------------------------------
+# Check for these functions before the time headers are checked
+#-----------------------------------------------------------------------------
+HDF_FUNCTION_TEST (STDC_HEADERS)
 
 #-----------------------------------------------------------------------------
 #  Check for large file support
@@ -277,13 +284,12 @@ if (NOT WINDOWS)
   set (HDF_EXTRA_C_FLAGS -D_GNU_SOURCE)
 
   option (HDF_ENABLE_LARGE_FILE "Enable support for large (64-bit) files on Linux." ON)
-  if (HDF_ENABLE_LARGE_FILE)
+  if (HDF_ENABLE_LARGE_FILE AND NOT DEFINED TEST_LFS_WORKS_RUN)
     set (msg "Performing TEST_LFS_WORKS")
-    TRY_RUN (TEST_LFS_WORKS_RUN   TEST_LFS_WORKS_COMPILE
+    try_run (TEST_LFS_WORKS_RUN   TEST_LFS_WORKS_COMPILE
         ${CMAKE_BINARY_DIR}
         ${HDF_RESOURCES_EXT_DIR}/HDFTests.c
-        CMAKE_FLAGS -DCOMPILE_DEFINITIONS:STRING=-DTEST_LFS_WORKS
-        OUTPUT_VARIABLE OUTPUT
+        COMPILE_DEFINITIONS "-DTEST_LFS_WORKS"
     )
 
     # The LARGEFILE definitions were from the transition period
@@ -300,14 +306,14 @@ if (NOT WINDOWS)
         set (TEST_LFS_WORKS "" CACHE INTERNAL ${msg})
         message (STATUS "${msg}... no")
         file (APPEND ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/CMakeError.log
-              "Test TEST_LFS_WORKS Run failed with the following output and exit code:\n ${OUTPUT}\n"
+              "Test TEST_LFS_WORKS Run failed with the following exit code:\n ${TEST_LFS_WORKS_RUN}\n"
         )
       endif ()
     else ()
       set (TEST_LFS_WORKS "" CACHE INTERNAL ${msg})
       message (STATUS "${msg}... no")
       file (APPEND ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/CMakeError.log
-          "Test TEST_LFS_WORKS Compile failed with the following output:\n ${OUTPUT}\n"
+          "Test TEST_LFS_WORKS Compile failed\n"
       )
     endif ()
   endif ()
@@ -322,17 +328,12 @@ if (NOT WINDOWS OR MINGW)
   HDF_FUNCTION_TEST (HAVE_OFF64_T)
   if (${HDF_PREFIX}_HAVE_OFF64_T)
     CHECK_FUNCTION_EXISTS (lseek64            ${HDF_PREFIX}_HAVE_LSEEK64)
-    CHECK_FUNCTION_EXISTS (fseeko64           ${HDF_PREFIX}_HAVE_FSEEKO64)
-    CHECK_FUNCTION_EXISTS (ftello64           ${HDF_PREFIX}_HAVE_FTELLO64)
-    CHECK_FUNCTION_EXISTS (ftruncate64        ${HDF_PREFIX}_HAVE_FTRUNCATE64)
   endif ()
 
   CHECK_FUNCTION_EXISTS (fseeko               ${HDF_PREFIX}_HAVE_FSEEKO)
-  CHECK_FUNCTION_EXISTS (ftello               ${HDF_PREFIX}_HAVE_FTELLO)
 
   HDF_FUNCTION_TEST (HAVE_STAT64_STRUCT)
   if (HAVE_STAT64_STRUCT)
-    CHECK_FUNCTION_EXISTS (fstat64            ${HDF_PREFIX}_HAVE_FSTAT64)
     CHECK_FUNCTION_EXISTS (stat64             ${HDF_PREFIX}_HAVE_STAT64)
   endif ()
 endif ()
@@ -412,13 +413,13 @@ HDF_CHECK_TYPE_SIZE (off64_t        ${HDF_PREFIX}_SIZEOF_OFF64_T)
 if (NOT ${HDF_PREFIX}_SIZEOF_OFF64_T)
   set (${HDF_PREFIX}_SIZEOF_OFF64_T 0)
 endif ()
+HDF_CHECK_TYPE_SIZE (time_t          ${HDF_PREFIX}_SIZEOF_TIME_T)
 
 #-----------------------------------------------------------------------------
 # Extra C99 types
 #-----------------------------------------------------------------------------
 
 # _Bool type support
-CHECK_INCLUDE_FILE_CONCAT (stdbool.h    ${HDF_PREFIX}_HAVE_STDBOOL_H)
 if (HAVE_STDBOOL_H)
   set (CMAKE_EXTRA_INCLUDE_FILES stdbool.h)
   HDF_CHECK_TYPE_SIZE (bool         ${HDF_PREFIX}_SIZEOF_BOOL)
@@ -442,7 +443,7 @@ if (NOT WINDOWS)
   # Check a bunch of time functions
   #-----------------------------------------------------------------------------
   CHECK_FUNCTION_EXISTS (gettimeofday      ${HDF_PREFIX}_HAVE_GETTIMEOFDAY)
-  foreach (test
+  foreach (time_test
       HAVE_TM_GMTOFF
       HAVE___TM_GMTOFF
 #      HAVE_TIMEZONE
@@ -452,7 +453,7 @@ if (NOT WINDOWS)
       HAVE_TM_ZONE
       HAVE_STRUCT_TM_TM_ZONE
   )
-    HDF_FUNCTION_TEST (${test})
+    HDF_FUNCTION_TEST (${time_test})
   endforeach ()
   if (NOT CYGWIN AND NOT MINGW)
       HDF_FUNCTION_TEST (HAVE_TIMEZONE)
@@ -505,6 +506,8 @@ CHECK_FUNCTION_EXISTS (lround            ${HDF_PREFIX}_HAVE_LROUND)
 CHECK_FUNCTION_EXISTS (lroundf           ${HDF_PREFIX}_HAVE_LROUNDF)
 CHECK_FUNCTION_EXISTS (lstat             ${HDF_PREFIX}_HAVE_LSTAT)
 
+CHECK_FUNCTION_EXISTS (pread             ${HDF_PREFIX}_HAVE_PREAD)
+CHECK_FUNCTION_EXISTS (pwrite            ${HDF_PREFIX}_HAVE_PWRITE)
 CHECK_FUNCTION_EXISTS (rand_r            ${HDF_PREFIX}_HAVE_RAND_R)
 CHECK_FUNCTION_EXISTS (random            ${HDF_PREFIX}_HAVE_RANDOM)
 CHECK_FUNCTION_EXISTS (round             ${HDF_PREFIX}_HAVE_ROUND)
@@ -554,7 +557,7 @@ endif ()
 # Check a bunch of other functions
 #-----------------------------------------------------------------------------
 if (NOT WINDOWS)
-  foreach (test
+  foreach (other_test
       HAVE_ATTRIBUTE
       HAVE_C99_FUNC
 #      STDC_HEADERS
@@ -563,7 +566,7 @@ if (NOT WINDOWS)
       SYSTEM_SCOPE_THREADS
       HAVE_SOCKLEN_T
   )
-    HDF_FUNCTION_TEST (${test})
+    HDF_FUNCTION_TEST (${other_test})
   endforeach ()
 endif ()
 
@@ -573,36 +576,27 @@ endif ()
 if (WINDOWS)
   if (NOT HDF_NO_IOEO_TEST)
   message (STATUS "Checking for InitOnceExecuteOnce:")
-  if (NOT DEFINED ${${HDF_PREFIX}_HAVE_IOEO})
+  if (NOT DEFINED ${HDF_PREFIX}_HAVE_IOEO)
     if (LARGEFILE)
       set (CMAKE_REQUIRED_DEFINITIONS
           "${CURRENT_TEST_DEFINITIONS} -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE"
       )
     endif ()
-    set (MACRO_CHECK_FUNCTION_DEFINITIONS
-      "-DHAVE_IOEO ${CMAKE_REQUIRED_FLAGS}")
-    if (CMAKE_REQUIRED_LIBRARIES)
-      set (CHECK_C_SOURCE_COMPILES_ADD_LIBRARIES
-        "-DLINK_LIBRARIES:STRING=${CMAKE_REQUIRED_LIBRARIES}")
-    else ()
-      set (CHECK_C_SOURCE_COMPILES_ADD_LIBRARIES)
-    endif ()
+    set (MACRO_CHECK_FUNCTION_DEFINITIONS "-DHAVE_IOEO ${CMAKE_REQUIRED_FLAGS}")
     if (CMAKE_REQUIRED_INCLUDES)
-      set (CHECK_C_SOURCE_COMPILES_ADD_INCLUDES
-        "-DINCLUDE_DIRECTORIES:STRING=${CMAKE_REQUIRED_INCLUDES}")
+      set (CHECK_C_SOURCE_COMPILES_ADD_INCLUDES "-DINCLUDE_DIRECTORIES:STRING=${CMAKE_REQUIRED_INCLUDES}")
     else ()
       set (CHECK_C_SOURCE_COMPILES_ADD_INCLUDES)
     endif ()
 
     TRY_RUN(HAVE_IOEO_EXITCODE HAVE_IOEO_COMPILED
-      ${CMAKE_BINARY_DIR}
-      ${HDF_RESOURCES_EXT_DIR}/HDFTests.c
-      COMPILE_DEFINITIONS ${CMAKE_REQUIRED_DEFINITIONS}
-      CMAKE_FLAGS -DCOMPILE_DEFINITIONS:STRING=${MACRO_CHECK_FUNCTION_DEFINITIONS}
-      -DCMAKE_SKIP_RPATH:BOOL=${CMAKE_SKIP_RPATH}
-      "${CHECK_C_SOURCE_COMPILES_ADD_LIBRARIES}"
-      "${CHECK_C_SOURCE_COMPILES_ADD_INCLUDES}"
-      COMPILE_OUTPUT_VARIABLE OUTPUT)
+        ${CMAKE_BINARY_DIR}
+        ${HDF_RESOURCES_EXT_DIR}/HDFTests.c
+        COMPILE_DEFINITIONS "${CMAKE_REQUIRED_DEFINITIONS} ${MACRO_CHECK_FUNCTION_DEFINITIONS}"
+        LINK_LIBRARIES "${HDF5_REQUIRED_LIBRARIES}"
+        CMAKE_FLAGS "${CHECK_C_SOURCE_COMPILES_ADD_INCLUDES} -DCMAKE_SKIP_RPATH:BOOL=${CMAKE_SKIP_RPATH}"
+        COMPILE_OUTPUT_VARIABLE OUTPUT
+    )
     # if it did not compile make the return value fail code of 1
     if (NOT HAVE_IOEO_COMPILED)
       set (HAVE_IOEO_EXITCODE 1)
@@ -653,8 +647,8 @@ if (NOT ${HDF_PREFIX}_PRINTF_LL_WIDTH OR ${HDF_PREFIX}_PRINTF_LL_WIDTH MATCHES "
   TRY_RUN (${HDF_PREFIX}_PRINTF_LL_TEST_RUN   ${HDF_PREFIX}_PRINTF_LL_TEST_COMPILE
       ${CMAKE_BINARY_DIR}
       ${HDF_RESOURCES_EXT_DIR}/HDFTests.c
-      CMAKE_FLAGS -DCOMPILE_DEFINITIONS:STRING=${CURRENT_TEST_DEFINITIONS}
-      OUTPUT_VARIABLE OUTPUT
+      COMPILE_DEFINITIONS "${CURRENT_TEST_DEFINITIONS}"
+      RUN_OUTPUT_VARIABLE OUTPUT
   )
   if (${HDF_PREFIX}_PRINTF_LL_TEST_COMPILE)
     if (${HDF_PREFIX}_PRINTF_LL_TEST_RUN MATCHES 0)
@@ -666,7 +660,7 @@ if (NOT ${HDF_PREFIX}_PRINTF_LL_WIDTH OR ${HDF_PREFIX}_PRINTF_LL_WIDTH MATCHES "
     endif ()
   else ()
     file (APPEND ${CMAKE_BINARY_DIR}/CMakeFiles/CMakeError.log
-        "Test ${HDF_PREFIX}_PRINTF_LL_WIDTH failed with the following output:\n ${OUTPUT}\n"
+        "Test ${HDF_PREFIX}_PRINTF_LL_WIDTH failed\n"
     )
   endif ()
 

config/cmake_ext_mod/HDFLibMacros.cmake

@@ -30,6 +30,7 @@ macro (EXTERNAL_JPEG_LIBRARY compress_type jpeg_pic)
             -DCMAKE_ARCHIVE_OUTPUT_DIRECTORY:PATH=${CMAKE_ARCHIVE_OUTPUT_DIRECTORY}
             -DCMAKE_PDB_OUTPUT_DIRECTORY:PATH=${CMAKE_PDB_OUTPUT_DIRECTORY}
             -DCMAKE_ANSI_CFLAGS:STRING=${jpeg_pic}
+            -DCMAKE_TOOLCHAIN_FILE:STRING=${CMAKE_TOOLCHAIN_FILE}
     )
   elseif (${compress_type} MATCHES "GIT")
     EXTERNALPROJECT_ADD (JPEG
@@ -47,6 +48,7 @@ macro (EXTERNAL_JPEG_LIBRARY compress_type jpeg_pic)
             -DCMAKE_ARCHIVE_OUTPUT_DIRECTORY:PATH=${CMAKE_ARCHIVE_OUTPUT_DIRECTORY}
             -DCMAKE_PDB_OUTPUT_DIRECTORY:PATH=${CMAKE_PDB_OUTPUT_DIRECTORY}
             -DCMAKE_ANSI_CFLAGS:STRING=${jpeg_pic}
+            -DCMAKE_TOOLCHAIN_FILE:STRING=${CMAKE_TOOLCHAIN_FILE}
     )
   elseif (${compress_type} MATCHES "TGZ")
     EXTERNALPROJECT_ADD (JPEG
@@ -64,6 +66,7 @@ macro (EXTERNAL_JPEG_LIBRARY compress_type jpeg_pic)
             -DCMAKE_ARCHIVE_OUTPUT_DIRECTORY:PATH=${CMAKE_ARCHIVE_OUTPUT_DIRECTORY}
             -DCMAKE_PDB_OUTPUT_DIRECTORY:PATH=${CMAKE_PDB_OUTPUT_DIRECTORY}
             -DCMAKE_ANSI_CFLAGS:STRING=${jpeg_pic}
+            -DCMAKE_TOOLCHAIN_FILE:STRING=${CMAKE_TOOLCHAIN_FILE}
     )
   endif ()
   externalproject_get_property (JPEG BINARY_DIR SOURCE_DIR)
@@ -72,14 +75,14 @@ macro (EXTERNAL_JPEG_LIBRARY compress_type jpeg_pic)
 # Create imported target jpeg-static
   add_library(jpeg-static STATIC IMPORTED)
   HDF_IMPORT_SET_LIB_OPTIONS (jpeg-static "jpeg" STATIC "")
-  add_dependencies (JPEG jpeg-static)
+  add_dependencies (jpeg-static JPEG)
   set (JPEG_STATIC_LIBRARY "jpeg-static")
   set (JPEG_LIBRARIES ${JPEG_STATIC_LIBRARY})
   if (BUILD_SHARED_LIBS)
     # Create imported target jpeg-shared
     add_library(jpeg-shared SHARED IMPORTED)
     HDF_IMPORT_SET_LIB_OPTIONS (jpeg-shared "jpeg" SHARED "")
-    add_dependencies (JPEG jpeg-shared)
+    add_dependencies (jpeg-shared JPEG)
     set (JPEG_SHARED_LIBRARY "jpeg-shared")
     set (JPEG_LIBRARIES ${JPEG_LIBRARIES} ${JPEG_SHARED_LIBRARY})
   endif ()
@@ -121,6 +124,7 @@ macro (EXTERNAL_SZIP_LIBRARY compress_type encoding)
             -DCMAKE_PDB_OUTPUT_DIRECTORY:PATH=${CMAKE_PDB_OUTPUT_DIRECTORY}
             -DCMAKE_ANSI_CFLAGS:STRING=${CMAKE_ANSI_CFLAGS}
             -DSZIP_ENABLE_ENCODING:BOOL=${encoding}
+            -DCMAKE_TOOLCHAIN_FILE:STRING=${CMAKE_TOOLCHAIN_FILE}
     )
   elseif (${compress_type} MATCHES "GIT")
     EXTERNALPROJECT_ADD (SZIP
@@ -139,6 +143,7 @@ macro (EXTERNAL_SZIP_LIBRARY compress_type encoding)
             -DCMAKE_PDB_OUTPUT_DIRECTORY:PATH=${CMAKE_PDB_OUTPUT_DIRECTORY}
             -DCMAKE_ANSI_CFLAGS:STRING=${CMAKE_ANSI_CFLAGS}
             -DSZIP_ENABLE_ENCODING:BOOL=${encoding}
+            -DCMAKE_TOOLCHAIN_FILE:STRING=${CMAKE_TOOLCHAIN_FILE}
     )
   elseif (${compress_type} MATCHES "TGZ")
     EXTERNALPROJECT_ADD (SZIP
@@ -157,6 +162,7 @@ macro (EXTERNAL_SZIP_LIBRARY compress_type encoding)
             -DCMAKE_PDB_OUTPUT_DIRECTORY:PATH=${CMAKE_PDB_OUTPUT_DIRECTORY}
             -DCMAKE_ANSI_CFLAGS:STRING=${CMAKE_ANSI_CFLAGS}
             -DSZIP_ENABLE_ENCODING:BOOL=${encoding}
+            -DCMAKE_TOOLCHAIN_FILE:STRING=${CMAKE_TOOLCHAIN_FILE}
     )
   endif ()
   externalproject_get_property (SZIP BINARY_DIR SOURCE_DIR)
@@ -165,14 +171,14 @@ macro (EXTERNAL_SZIP_LIBRARY compress_type encoding)
 # Create imported target szip-static
   add_library(szip-static STATIC IMPORTED)
   HDF_IMPORT_SET_LIB_OPTIONS (szip-static "szip" STATIC "")
-  add_dependencies (SZIP szip-static)
+  add_dependencies (szip-static SZIP)
   set (SZIP_STATIC_LIBRARY "szip-static")
   set (SZIP_LIBRARIES ${SZIP_STATIC_LIBRARY})
   if (BUILD_SHARED_LIBS)
     # Create imported target szip-shared
     add_library(szip-shared SHARED IMPORTED)
     HDF_IMPORT_SET_LIB_OPTIONS (szip-shared "szip" SHARED "")
-    add_dependencies (SZIP szip-shared)
+    add_dependencies (szip-shared SZIP)
     set (SZIP_SHARED_LIBRARY "szip-shared")
     set (SZIP_LIBRARIES ${SZIP_LIBRARIES} ${SZIP_SHARED_LIBRARY})
   endif ()
@@ -213,6 +219,7 @@ macro (EXTERNAL_ZLIB_LIBRARY compress_type)
             -DCMAKE_ARCHIVE_OUTPUT_DIRECTORY:PATH=${CMAKE_ARCHIVE_OUTPUT_DIRECTORY}
             -DCMAKE_PDB_OUTPUT_DIRECTORY:PATH=${CMAKE_PDB_OUTPUT_DIRECTORY}
             -DCMAKE_ANSI_CFLAGS:STRING=${CMAKE_ANSI_CFLAGS}
+            -DCMAKE_TOOLCHAIN_FILE:STRING=${CMAKE_TOOLCHAIN_FILE}
     )
   elseif (${compress_type} MATCHES "GIT")
     EXTERNALPROJECT_ADD (ZLIB
@@ -230,6 +237,7 @@ macro (EXTERNAL_ZLIB_LIBRARY compress_type)
             -DCMAKE_ARCHIVE_OUTPUT_DIRECTORY:PATH=${CMAKE_ARCHIVE_OUTPUT_DIRECTORY}
             -DCMAKE_PDB_OUTPUT_DIRECTORY:PATH=${CMAKE_PDB_OUTPUT_DIRECTORY}
             -DCMAKE_ANSI_CFLAGS:STRING=${CMAKE_ANSI_CFLAGS}
+            -DCMAKE_TOOLCHAIN_FILE:STRING=${CMAKE_TOOLCHAIN_FILE}
     )
   elseif (${compress_type} MATCHES "TGZ")
     EXTERNALPROJECT_ADD (ZLIB
@@ -247,6 +255,7 @@ macro (EXTERNAL_ZLIB_LIBRARY compress_type)
             -DCMAKE_ARCHIVE_OUTPUT_DIRECTORY:PATH=${CMAKE_ARCHIVE_OUTPUT_DIRECTORY}
             -DCMAKE_PDB_OUTPUT_DIRECTORY:PATH=${CMAKE_PDB_OUTPUT_DIRECTORY}
             -DCMAKE_ANSI_CFLAGS:STRING=${CMAKE_ANSI_CFLAGS}
+            -DCMAKE_TOOLCHAIN_FILE:STRING=${CMAKE_TOOLCHAIN_FILE}
     )
   endif ()
   externalproject_get_property (ZLIB BINARY_DIR SOURCE_DIR)
@@ -260,14 +269,14 @@ macro (EXTERNAL_ZLIB_LIBRARY compress_type)
 # Create imported target zlib-static
   add_library(zlib-static STATIC IMPORTED)
   HDF_IMPORT_SET_LIB_OPTIONS (zlib-static ${ZLIB_LIB_NAME} STATIC "")
-  add_dependencies (ZLIB zlib-static)
+  add_dependencies (zlib-static ZLIB)
   set (ZLIB_STATIC_LIBRARY "zlib-static")
   set (ZLIB_LIBRARIES ${ZLIB_STATIC_LIBRARY})
   if (BUILD_SHARED_LIBS)
     # Create imported target zlib-shared
     add_library(zlib-shared SHARED IMPORTED)
     HDF_IMPORT_SET_LIB_OPTIONS (zlib-shared ${ZLIB_LIB_NAME} SHARED "")
-    add_dependencies (ZLIB zlib-shared)
+    add_dependencies (zlib-shared ZLIB)
     set (ZLIB_SHARED_LIBRARY "zlib-shared")
     set (ZLIB_LIBRARIES ${ZLIB_LIBRARIES} ${ZLIB_SHARED_LIBRARY})
   endif ()

config/cmake_ext_mod/HDFMacros.cmake

@@ -14,7 +14,7 @@
 macro (SET_HDF_BUILD_TYPE)
   get_property(_isMultiConfig GLOBAL PROPERTY GENERATOR_IS_MULTI_CONFIG)
   if(_isMultiConfig)
-    set(HDF_CFG_NAME ${CTEST_CONFIGURATION_TYPE})
+    set(HDF_CFG_NAME ${CMAKE_BUILD_TYPE})
     set(HDF_BUILD_TYPE ${CMAKE_CFG_INTDIR})
     set(HDF_CFG_BUILD_TYPE \${CMAKE_INSTALL_CONFIG_NAME})
   else()
@@ -170,7 +170,7 @@ macro (HDF_IMPORT_SET_LIB_OPTIONS libtarget libname libtype libversion)
   if (${importtype} MATCHES "IMPORT")
     set (importprefix "${CMAKE_STATIC_LIBRARY_PREFIX}")
   endif ()
-  if (${CMAKE_BUILD_TYPE} MATCHES "Debug")
+  if (${HDF_CFG_NAME} MATCHES "Debug")
     set (IMPORT_LIB_NAME ${LIB_DEBUG_NAME})
   else ()
     set (IMPORT_LIB_NAME ${LIB_RELEASE_NAME})
@@ -273,14 +273,14 @@ macro (HDF_README_PROPERTIES target_fortran)
           set (BINARY_PLATFORM "${BINARY_PLATFORM}, using VISUAL STUDIO 2015")
         else ()
           set (BINARY_PLATFORM "${BINARY_PLATFORM}, using VISUAL STUDIO 2017")
-         endif ()
+        endif ()
       else ()
         set (BINARY_PLATFORM "${BINARY_PLATFORM}, using VISUAL STUDIO ${CMAKE_C_COMPILER_VERSION}")
       endif ()
     endif ()
   elseif (APPLE)
     set (BINARY_EXAMPLE_ENDING "tar.gz")
-    set (BINARY_INSTALL_ENDING "dmg")
+    set (BINARY_INSTALL_ENDING "sh") # if packaging changes - use dmg
     set (BINARY_PLATFORM "${BINARY_PLATFORM} ${CMAKE_SYSTEM_VERSION} ${CMAKE_SYSTEM_PROCESSOR}")
     set (BINARY_PLATFORM "${BINARY_PLATFORM}, using ${CMAKE_C_COMPILER_ID} C ${CMAKE_C_COMPILER_VERSION}")
   else ()
@@ -358,6 +358,21 @@ macro (HDF_DIR_PATHS package_prefix)
     endif ()
   endif ()
 
+  set (CMAKE_SKIP_BUILD_RPATH  FALSE)
+  set (CMAKE_INSTALL_RPATH_USE_LINK_PATH  FALSE)
+  set (CMAKE_BUILD_WITH_INSTALL_RPATH ON)
+  if (APPLE)
+    set (CMAKE_INSTALL_NAME_DIR "@rpath")
+    set (CMAKE_INSTALL_RPATH
+        "@executable_path/../${${package_prefix}_INSTALL_LIB_DIR}"
+        "@executable_path/"
+        "@loader_path/../${${package_prefix}_INSTALL_LIB_DIR}"
+        "@loader_path/"
+    )
+  else ()
+    set (CMAKE_INSTALL_RPATH "\$ORIGIN/../${${package_prefix}_INSTALL_LIB_DIR}:\$ORIGIN/")
+  endif ()
+
   if (DEFINED ADDITIONAL_CMAKE_PREFIX_PATH AND EXISTS "${ADDITIONAL_CMAKE_PREFIX_PATH}")
     set (CMAKE_PREFIX_PATH ${ADDITIONAL_CMAKE_PREFIX_PATH} ${CMAKE_PREFIX_PATH})
   endif ()
@@ -380,13 +395,14 @@ macro (HDF_DIR_PATHS package_prefix)
     set (CMAKE_Fortran_MODULE_DIRECTORY
         ${PROJECT_BINARY_DIR}/bin CACHE PATH "Single Directory for all fortran modules."
     )
-    if (WIN32)
-      set (CMAKE_TEST_OUTPUT_DIRECTORY ${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${CTEST_CONFIGURATION_TYPE})
+    get_property(_isMultiConfig GLOBAL PROPERTY GENERATOR_IS_MULTI_CONFIG)
+    if(_isMultiConfig)
+      set (CMAKE_TEST_OUTPUT_DIRECTORY ${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${CMAKE_BUILD_TYPE})
       set (CMAKE_PDB_OUTPUT_DIRECTORY
           ${PROJECT_BINARY_DIR}/bin CACHE PATH "Single Directory for all pdb files."
       )
     else ()
-      set (CMAKE_TEST_OUTPUT_DIRECTORY ${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${CTEST_CONFIGURATION_TYPE})
+      set (CMAKE_TEST_OUTPUT_DIRECTORY ${CMAKE_RUNTIME_OUTPUT_DIRECTORY})
     endif ()
   else ()
     # if we are externally configured, but the project uses old cmake scripts

config/cmake_ext_mod/HDFUseCXX.cmake

@@ -48,8 +48,8 @@ macro (HDF_CXX_FUNCTION_TEST OTHER_TEST)
   if (NOT DEFINED ${OTHER_TEST})
     set (MACRO_CHECK_FUNCTION_DEFINITIONS "-D${OTHER_TEST} ${CMAKE_REQUIRED_FLAGS}")
     set (OTHER_TEST_ADD_LIBRARIES)
-    if (CMAKE_REQUIRED_LIBRARIES)
-      set (OTHER_TEST_ADD_LIBRARIES "-DLINK_LIBRARIES:STRING=${CMAKE_REQUIRED_LIBRARIES}")
+    if (HDF5_REQUIRED_LIBRARIES)
+      set (OTHER_TEST_ADD_LIBRARIES "-DLINK_LIBRARIES:STRING=${HDF5_REQUIRED_LIBRARIES}")
     endif ()
 
     foreach (def
@@ -96,14 +96,14 @@ endmacro ()
 # Check a bunch of cxx functions
 #-----------------------------------------------------------------------------
 if (CMAKE_CXX_COMPILER_LOADED)
-  foreach (test
+  foreach (cxx_test
       OLD_HEADER_FILENAME
-      ${HDF_PREFIX}_NO_NAMESPACE
-      ${HDF_PREFIX}_NO_STD
+      HDF_NO_NAMESPACE
+      HDF_NO_STD
       BOOL_NOTDEFINED
       NO_STATIC_CAST
-      ${HDF_PREFIX}_CXX_HAVE_OFFSETOF
+      CXX_HAVE_OFFSETOF
   )
-    HDF_CXX_FUNCTION_TEST (${test})
+    HDF_CXX_FUNCTION_TEST (${cxx_test})
   endforeach ()
 endif ()

config/cmake_ext_mod/HDFUseFortran.cmake

@@ -48,9 +48,9 @@ set (H5_FC_FUNC_ "H5_FC_FUNC_(name,NAME) ${CMAKE_MATCH_1}")
 #-----------------------------------------------------------------------------
 macro (CHECK_FORTRAN_FEATURE FUNCTION CODE VARIABLE)
     message (STATUS "Testing Fortran ${FUNCTION}")
-    if (CMAKE_REQUIRED_LIBRARIES)
+    if (HDF5_REQUIRED_LIBRARIES)
       set (CHECK_FUNCTION_EXISTS_ADD_LIBRARIES
-          "-DLINK_LIBRARIES:STRING=${CMAKE_REQUIRED_LIBRARIES}")
+          "-DLINK_LIBRARIES:STRING=${HDF5_REQUIRED_LIBRARIES}")
     else ()
       set (CHECK_FUNCTION_EXISTS_ADD_LIBRARIES)
     endif ()

config/cmake_ext_mod/grepTest.cmake

@@ -57,15 +57,15 @@ file (READ ${TEST_FOLDER}/${TEST_OUTPUT} TEST_STREAM)
 # TEST_REFERENCE should always be matched
 string (REGEX MATCH "${TEST_REFERENCE}" TEST_MATCH ${TEST_STREAM})
 string (COMPARE EQUAL "${TEST_REFERENCE}" "${TEST_MATCH}" TEST_RESULT)
-if ("${TEST_RESULT}" STREQUAL "0")
+if (NOT TEST_RESULT)
   message (FATAL_ERROR "Failed: The output of ${TEST_PROGRAM} did not contain ${TEST_REFERENCE}")
 endif ()
 
 string (REGEX MATCH "${TEST_FILTER}" TEST_MATCH ${TEST_STREAM})
-if ("${TEST_EXPECT}" STREQUAL "1")
-  # TEST_EXPECT (1) interperts TEST_FILTER as NOT to match
+if (TEST_EXPECT)
+  # TEST_EXPECT (1) interprets TEST_FILTER as; NOT to match
   string (LENGTH "${TEST_MATCH}" TEST_RESULT)
-  if (NOT "${TEST_RESULT}" STREQUAL "0")
+  if (TEST_RESULT)
     message (FATAL_ERROR "Failed: The output of ${TEST_PROGRAM} did contain ${TEST_FILTER}")
   endif ()
 endif ()

config/cmake_ext_mod/runTest.cmake

@@ -26,9 +26,6 @@ endif ()
 if (NOT TEST_EXPECT)
   message (STATUS "Require TEST_EXPECT to be defined")
 endif ()
-if (NOT TEST_SKIP_COMPARE AND NOT TEST_REFERENCE)
-  message (FATAL_ERROR "Require TEST_REFERENCE to be defined")
-endif ()
 
 if (EXISTS ${TEST_FOLDER}/${TEST_OUTPUT})
   file (REMOVE ${TEST_FOLDER}/${TEST_OUTPUT})
@@ -38,11 +35,6 @@ if (EXISTS ${TEST_FOLDER}/${TEST_OUTPUT}.err)
   file (REMOVE ${TEST_FOLDER}/${TEST_OUTPUT}.err)
 endif ()
 
-# if there is not an error reference file add the error output to the stdout file
-if (NOT TEST_ERRREF)
-  set (ERROR_APPEND 1)
-endif ()
-
 message (STATUS "COMMAND: ${TEST_PROGRAM} ${TEST_ARGS}")
 
 if (TEST_LIBRARY_DIRECTORY)
@@ -88,7 +80,7 @@ if (TEST_REGEX)
   file (READ ${TEST_FOLDER}/${TEST_OUTPUT} TEST_STREAM)
   string (REGEX MATCH "${TEST_REGEX}" REGEX_MATCH ${TEST_STREAM})
   string (COMPARE EQUAL "${REGEX_MATCH}" "${TEST_MATCH}" REGEX_RESULT)
-  if ("${REGEX_RESULT}" STREQUAL "0")
+  if (NOT REGEX_RESULT)
     message (STATUS "Failed: The output of ${TEST_PROGRAM} did not contain ${TEST_MATCH}")
   endif ()
 endif ()
@@ -96,9 +88,21 @@ endif ()
 message (STATUS "COMMAND Result: ${TEST_RESULT}")
 
 # if the .err file exists and ERRROR_APPEND is enabled
-if (ERROR_APPEND AND EXISTS ${TEST_FOLDER}/${TEST_OUTPUT}.err)
+if (EXISTS ${TEST_FOLDER}/${TEST_OUTPUT}.err)
   file (READ ${TEST_FOLDER}/${TEST_OUTPUT}.err TEST_STREAM)
-  file (APPEND ${TEST_FOLDER}/${TEST_OUTPUT} "${TEST_STREAM}")
+  if (TEST_MASK_FILE)
+    STRING(REGEX REPLACE "CurrentDir is [^\n]+\n" "CurrentDir is (dir name)\n" TEST_STREAM "${TEST_STREAM}")
+  endif ()
+  # remove special output
+  string (REGEX REPLACE "^.*_pmi_alps[^\n]+\n" "" TEST_STREAM "${TEST_STREAM}")
+
+  if (NOT ERROR_APPEND)
+    # write back to original .err file
+    file (WRITE ${TEST_FOLDER}/${TEST_OUTPUT}.err "${TEST_STREAM}")
+  else ()
+    # append error output to the stdout output file
+    file (APPEND ${TEST_FOLDER}/${TEST_OUTPUT} "${TEST_STREAM}")
+  endif ()
 endif ()
 
 # append the test result status with a predefined text
@@ -107,7 +111,7 @@ if (TEST_APPEND)
 endif ()
 
 # if the return value is !=${TEST_EXPECT} bail out
-if (NOT "${TEST_RESULT}" STREQUAL "${TEST_EXPECT}")
+if (NOT TEST_RESULT EQUAL TEST_EXPECT)
   if (NOT TEST_NOERRDISPLAY)
     if (EXISTS ${TEST_FOLDER}/${TEST_OUTPUT})
       file (READ ${TEST_FOLDER}/${TEST_OUTPUT} TEST_STREAM)
@@ -119,6 +123,14 @@ endif ()
 
 message (STATUS "COMMAND Error: ${TEST_ERROR}")
 
+# remove special output
+file (READ ${TEST_FOLDER}/${TEST_OUTPUT} TEST_STREAM)
+string (FIND TEST_STREAM "_pmi_alps" "${TEST_FIND_RESULT}")
+if (TEST_FIND_RESULT GREATER 0)
+  string (REGEX REPLACE "^.*_pmi_alps[^\n]+\n" "" TEST_STREAM "${TEST_STREAM}")
+  file (WRITE ${TEST_FOLDER}/${TEST_OUTPUT} ${TEST_STREAM})
+endif ()
+
 # if the output file needs Storage text removed
 if (TEST_MASK)
   file (READ ${TEST_FOLDER}/${TEST_OUTPUT} TEST_STREAM)
@@ -173,63 +185,65 @@ endif ()
 
 # compare output files to references unless this must be skipped
 if (NOT TEST_SKIP_COMPARE)
-  if (WIN32 AND NOT MINGW)
-    file (READ ${TEST_FOLDER}/${TEST_REFERENCE} TEST_STREAM)
-    file (WRITE ${TEST_FOLDER}/${TEST_REFERENCE} "${TEST_STREAM}")
-  endif ()
-
-  if (NOT TEST_SORT_COMPARE)
-    # now compare the output with the reference
-    execute_process (
-        COMMAND ${CMAKE_COMMAND} -E compare_files ${TEST_FOLDER}/${TEST_OUTPUT} ${TEST_FOLDER}/${TEST_REFERENCE}
-        RESULT_VARIABLE TEST_RESULT
-    )
-  else ()
-    file (STRINGS ${TEST_FOLDER}/${TEST_OUTPUT} v1)
-    file (STRINGS ${TEST_FOLDER}/${TEST_REFERENCE} v2)
-    list (SORT v1)
-    list (SORT v2)
-    if (NOT v1 STREQUAL v2)
-      set(TEST_RESULT 1)
+  if (EXISTS ${TEST_FOLDER}/${TEST_REFERENCE})
+    if (WIN32 AND NOT MINGW)
+      file (READ ${TEST_FOLDER}/${TEST_REFERENCE} TEST_STREAM)
+      file (WRITE ${TEST_FOLDER}/${TEST_REFERENCE} "${TEST_STREAM}")
     endif ()
-  endif ()
 
-  if (NOT "${TEST_RESULT}" STREQUAL "0")
-    set (TEST_RESULT 0)
-    file (STRINGS ${TEST_FOLDER}/${TEST_OUTPUT} test_act)
-    list (LENGTH test_act len_act)
-    file (STRINGS ${TEST_FOLDER}/${TEST_REFERENCE} test_ref)
-    list (LENGTH test_ref len_ref)
-    if (NOT "${len_act}" STREQUAL "0" AND NOT "${len_ref}" STREQUAL "0")
-      math (EXPR _FP_LEN "${len_ref} - 1")
-      foreach (line RANGE 0 ${_FP_LEN})
-        list (GET test_act ${line} str_act)
-        list (GET test_ref ${line} str_ref)
-        if (NOT "${str_act}" STREQUAL "${str_ref}")
-          if (NOT "${str_act}" STREQUAL "")
-            set (TEST_RESULT 1)
-            message ("line = ${line}\n***ACTUAL: ${str_act}\n****REFER: ${str_ref}\n")
-          endif ()
-        endif ()
-      endforeach ()
+    if (NOT TEST_SORT_COMPARE)
+      # now compare the output with the reference
+      execute_process (
+          COMMAND ${CMAKE_COMMAND} -E compare_files ${TEST_FOLDER}/${TEST_OUTPUT} ${TEST_FOLDER}/${TEST_REFERENCE}
+          RESULT_VARIABLE TEST_RESULT
+      )
     else ()
-      if ("${len_act}" STREQUAL "0")
-        message (STATUS "COMPARE Failed: ${TEST_FOLDER}/${TEST_OUTPUT} is empty")
-      endif ()
-      if ("${len_ref}" STREQUAL "0")
-        message (STATUS "COMPARE Failed: ${TEST_FOLDER}/${TEST_REFERENCE} is empty")
+      file (STRINGS ${TEST_FOLDER}/${TEST_OUTPUT} v1)
+      file (STRINGS ${TEST_FOLDER}/${TEST_REFERENCE} v2)
+      list (SORT v1)
+      list (SORT v2)
+      if (NOT v1 STREQUAL v2)
+        set(TEST_RESULT 1)
       endif ()
     endif ()
-    if (NOT "${len_act}" STREQUAL "${len_ref}")
-      set (TEST_RESULT 1)
+
+    if (TEST_RESULT)
+      set (TEST_RESULT 0)
+      file (STRINGS ${TEST_FOLDER}/${TEST_OUTPUT} test_act)
+      list (LENGTH test_act len_act)
+      file (STRINGS ${TEST_FOLDER}/${TEST_REFERENCE} test_ref)
+      list (LENGTH test_ref len_ref)
+      if (len_act GREATER 0 AND len_ref GREATER 0)
+        math (EXPR _FP_LEN "${len_ref} - 1")
+        foreach (line RANGE 0 ${_FP_LEN})
+          list (GET test_act ${line} str_act)
+          list (GET test_ref ${line} str_ref)
+          if (NOT str_act STREQUAL str_ref)
+            if (str_act)
+              set (TEST_RESULT 1)
+              message ("line = ${line}\n***ACTUAL: ${str_act}\n****REFER: ${str_ref}\n")
+            endif ()
+          endif ()
+        endforeach ()
+      else ()
+        if (len_act EQUAL 0)
+          message (STATUS "COMPARE Failed: ${TEST_FOLDER}/${TEST_OUTPUT} is empty")
+        endif ()
+        if (len_ref EQUAL 0)
+          message (STATUS "COMPARE Failed: ${TEST_FOLDER}/${TEST_REFERENCE} is empty")
+        endif ()
+      endif ()
+      if (NOT len_act EQUAL len_ref)
+        set (TEST_RESULT 1)
+      endif ()
     endif ()
-  endif ()
 
-  message (STATUS "COMPARE Result: ${TEST_RESULT}")
+    message (STATUS "COMPARE Result: ${TEST_RESULT}")
 
-  # again, if return value is !=0 scream and shout
-  if (NOT "${TEST_RESULT}" STREQUAL "0")
-    message (FATAL_ERROR "Failed: The output of ${TEST_OUTPUT} did not match ${TEST_REFERENCE}")
+    # again, if return value is !=0 scream and shout
+    if (TEST_RESULT)
+      message (FATAL_ERROR "Failed: The output of ${TEST_OUTPUT} did not match ${TEST_REFERENCE}")
+    endif ()
   endif ()
 
   # now compare the .err file with the error reference, if supplied
@@ -244,34 +258,34 @@ if (NOT TEST_SKIP_COMPARE)
         COMMAND ${CMAKE_COMMAND} -E compare_files ${TEST_FOLDER}/${TEST_OUTPUT}.err ${TEST_FOLDER}/${TEST_ERRREF}
         RESULT_VARIABLE TEST_RESULT
     )
-    if (NOT "${TEST_RESULT}" STREQUAL "0")
+    if (TEST_RESULT)
       set (TEST_RESULT 0)
       file (STRINGS ${TEST_FOLDER}/${TEST_OUTPUT}.err test_act)
       list (LENGTH test_act len_act)
       file (STRINGS ${TEST_FOLDER}/${TEST_ERRREF} test_ref)
       list (LENGTH test_ref len_ref)
       math (EXPR _FP_LEN "${len_ref} - 1")
-      if (NOT "${len_act}" STREQUAL "0" AND NOT "${len_ref}" STREQUAL "0")
+      if (len_act GREATER 0 AND len_ref GREATER 0)
         math (EXPR _FP_LEN "${len_ref} - 1")
         foreach (line RANGE 0 ${_FP_LEN})
           list (GET test_act ${line} str_act)
           list (GET test_ref ${line} str_ref)
-          if (NOT "${str_act}" STREQUAL "${str_ref}")
-            if (NOT "${str_act}" STREQUAL "")
+          if (NOT str_act STREQUAL str_ref)
+            if (str_act)
               set (TEST_RESULT 1)
               message ("line = ${line}\n***ACTUAL: ${str_act}\n****REFER: ${str_ref}\n")
-             endif ()
+            endif ()
           endif ()
         endforeach ()
       else ()
-        if ("${len_act}" STREQUAL "0")
+        if (len_act EQUAL 0)
           message (STATUS "COMPARE Failed: ${TEST_FOLDER}/${TEST_OUTPUT}.err is empty")
         endif ()
-        if ("${len_ref}" STREQUAL "0")
+        if (len_ref EQUAL 0)
           message (STATUS "COMPARE Failed: ${TEST_FOLDER}/${TEST_ERRREF} is empty")
         endif ()
       endif ()
-      if (NOT "${len_act}" STREQUAL "${len_ref}")
+      if (NOT len_act EQUAL len_ref)
         set (TEST_RESULT 1)
       endif ()
     endif ()
@@ -279,11 +293,33 @@ if (NOT TEST_SKIP_COMPARE)
     message (STATUS "COMPARE Result: ${TEST_RESULT}")
 
     # again, if return value is !=0 scream and shout
-    if (NOT "${TEST_RESULT}" STREQUAL "0")
+    if (TEST_RESULT)
       message (FATAL_ERROR "Failed: The error output of ${TEST_OUTPUT}.err did not match ${TEST_ERRREF}")
     endif ()
   endif ()
 endif ()
 
+if (TEST_GREP_COMPARE)
+  # now grep the output with the reference
+  file (READ ${TEST_FOLDER}/${TEST_OUTPUT} TEST_STREAM)
+
+  # TEST_REFERENCE should always be matched
+  string (REGEX MATCH "${TEST_REFERENCE}" TEST_MATCH ${TEST_STREAM})
+  string (COMPARE EQUAL "${TEST_REFERENCE}" "${TEST_MATCH}" TEST_RESULT)
+  if (NOT TEST_RESULT)
+    message (FATAL_ERROR "Failed: The output of ${TEST_PROGRAM} did not contain ${TEST_REFERENCE}")
+  endif ()
+
+  string (REGEX MATCH "${TEST_FILTER}" TEST_MATCH ${TEST_STREAM})
+  if (TEST_EXPECT)
+    # TEST_EXPECT (1) interprets TEST_FILTER as; NOT to match
+    string (LENGTH "${TEST_MATCH}" TEST_RESULT)
+    if (TEST_RESULT)
+      message (FATAL_ERROR "Failed: The output of ${TEST_PROGRAM} did contain ${TEST_FILTER}")
+    endif ()
+  endif ()
+endif ()
+
 # everything went fine...
-message ("Passed: The output of ${TEST_PROGRAM} matches ${TEST_REFERENCE}")
+message ("${TEST_PROGRAM} Passed")
+

config/commence.am

@@ -97,7 +97,8 @@ CHECK_CLEANFILES=*.chkexe *.chklog *.clog *.clog2
 # exists.
 .PHONY: build-check-clean build-check-p build-check-s build-lib build-progs \
         build-tests check-clean check-install check-p check-s check-vfd \
-        install-doc lib progs tests uninstall-doc _exec_check-s _test help
+        check-vol install-doc lib progs tests uninstall-doc _exec_check-s \
+        _test help
 
 help:
 	@$(top_srcdir)/bin/makehelp