Turned off maintainer mode in configure.ac

Fixed 1.6 compatibility issues and ran source formatter

.autom4te.cfg

@@ -5,7 +5,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 

.clang-format

@@ -0,0 +1,96 @@
+---
+Language:        Cpp
+BasedOnStyle:  LLVM
+AlignConsecutiveAssignments: true
+#llvm11: AlignConsecutiveBitFields: false
+AlignConsecutiveDeclarations: true
+AlignConsecutiveMacros: true
+#llvm10-11: AlignOperands:   true - Align
+#llvm11: AllowShortEnumsOnASingleLine: true
+AllowShortFunctionsOnASingleLine: None
+AlwaysBreakAfterReturnType: AllDefinitions
+# Can enable the following section when llvm 12.x is out
+#AttributeMacros:
+#  - H5_ATTR_FORMAT
+#  - H5_ATTR_UNUSED
+#  - H5_ATTR_DEPRECATED_USED
+#  - H5_ATTR_NDEBUG_UNUSED
+#  - H5_ATTR_DEBUG_API_USED
+#  - H5_ATTR_PARALLEL_UNUSED
+#  - H5_ATTR_PARALLEL_USED
+#  - H5_ATTR_NORETURN
+#  - H5_ATTR_CONST
+#  - H5_ATTR_PURE
+#  - H5_ATTR_FALLTHROUGH
+BraceWrapping:
+  AfterFunction:   true
+  #llvm10-11: AfterControlStatement: false - Never
+  BeforeCatch:     true
+  BeforeElse:      true
+  #llvm11:   BeforeLambdaBody: false
+  #llvm11:   BeforeWhile:     false
+BreakBeforeBraces: Stroustrup
+BreakAfterJavaFieldAnnotations: true
+BreakStringLiterals: true
+ColumnLimit:     110    # Update $max_trace_macro_line_len in bin/trace also
+ForEachMacros: ['ALL_MEMBERS', 'UNIQUE_MEMBERS']
+IncludeCategories:
+  - Regex:           '^"(llvm|llvm-c|clang|clang-c)/'
+    Priority:        3
+    SortPriority:    0
+  - Regex:           '^(<|"(gtest|gmock|isl|json)/)'
+    Priority:        4
+    SortPriority:    0
+  - Regex:           '.*'
+    Priority:        0
+    SortPriority:    0
+  - Regex:           '^H5*.*'
+    Priority:        1
+    SortPriority:    0
+  - Regex:           'private.*'
+    Priority:        2
+    SortPriority:    0
+IncludeIsMainRegex: '(public)?$'
+IndentCaseLabels: true
+#llvm11: IndentCaseBlocks: false
+IndentGotoLabels: false
+#llvm11: IndentExternBlock: AfterExternBlock
+IndentWidth:     4
+#llvm11: InsertTrailingCommas: None
+MacroBlockBegin: "^BEGIN_FUNC"
+MacroBlockEnd: "^END_FUNC"
+ObjCBlockIndentWidth: 4
+#llvm11: ObjCBreakBeforeNestedBlockParam: true
+ReflowComments:  true
+SortIncludes:    false
+StatementMacros:
+  - FUNC_ENTER_API
+  - FUNC_LEAVE_API
+  - FUNC_ENTER_NOAPI_NOINIT_NOERR
+  - FUNC_LEAVE_NOAPI
+  - H5_BEGIN_TAG
+  - HGOTO_DONE_TAG
+  - H5_END_TAG
+  - HSYS_DONE_ERROR
+  - HSYS_GOTO_ERROR
+  - HDONE_ERROR
+  - HERROR
+  - H5_LEAVE
+  - H5E_PRINTF
+  - H5E_THROW
+  - HGOTO_DONE
+  - HGOTO_ERROR
+  - HMPI_ERROR
+  - HMPI_DONE_ERROR
+  - HMPI_GOTO_ERROR
+  - H5_GCC_DIAG_OFF
+  - H5_GCC_DIAG_ON
+  - CATCH
+#llvm10: TypenameMacros:
+#llvm10:   - STACK_OF
+#llvm10:   - LIST
+#llvm11: WhitespaceSensitiveMacros:
+#llvm11:   - STRINGIZE
+#llvm11:   - PP_STRINGIZE
+...
+

.gitignore

@@ -1,5 +1,11 @@
 # .gitignore file for HDF5
 
+# ctags
+**/tags
+
+# vim swap files
+**/.*.swp
+
 # Makefile.in files
 **/Makefile.in
 

.h5chkright.ini

@@ -5,7 +5,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 

CMakeFilters.cmake

@@ -5,7 +5,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #

CMakeInstallation.cmake

@@ -5,7 +5,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #

CMakeLists.txt

@@ -816,8 +816,13 @@ if (HDF5_ENABLE_THREADSAFE)
   if (Threads_FOUND)
     set (H5_HAVE_THREADSAFE 1)
   endif ()
+else()
+  # Always check for pthreads for VFD SWMR (for now)
+  set (THREADS_PREFER_PTHREAD_FLAG ON)
+  find_package (Threads REQUIRED)
 endif ()
 
+
 #-----------------------------------------------------------------------------
 # Option to build the map API
 #-----------------------------------------------------------------------------

COPYING

@@ -97,10 +97,4 @@ and/or accompanying materials:
 
 -----------------------------------------------------------------------------
 
-HDF5 is available with the SZIP compression library but SZIP is not part 
-of HDF5 and has separate copyright and license terms. See SZIP Compression 
-in HDF Products (www.hdfgroup.org/doc_resource/SZIP/) for further details.
-
------------------------------------------------------------------------------
-
 

CTestConfig.cmake

@@ -5,7 +5,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #

MANIFEST

@@ -6,7 +6,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #
@@ -33,6 +33,7 @@
 ./autogen.sh
 ./configure.ac
 
+./.clang-format
 ./.github/workflows/main.yml  _DO_NOT_DISTRIBUTE_
 
 ./m4/aclocal_cxx.m4
@@ -71,6 +72,8 @@
 ./bin/deploy
 ./bin/distdep
 ./bin/errors              _DO_NOT_DISTRIBUTE_
+./bin/format_source
+./bin/format_source_patch
 ./bin/genparser
 ./bin/gcov_script            _DO_NOT_DISTRIBUTE_
 ./bin/h5cc.in
@@ -151,6 +154,7 @@
 ./config/clang-warnings/error-general
 ./config/clang-warnings/general
 ./config/clang-warnings/no-developer-general
+./config/clang-warnings/noerror-general
 ./config/gnu-warnings/4.8-4.last
 ./config/gnu-warnings/4.8
 ./config/gnu-warnings/4.9
@@ -159,14 +163,19 @@
 ./config/gnu-warnings/7
 ./config/gnu-warnings/8
 ./config/gnu-warnings/9
+./config/gnu-warnings/9.3
 ./config/gnu-warnings/cxx-general
+./config/gnu-warnings/cxx-4.8
 ./config/gnu-warnings/cxx-4.9
 ./config/gnu-warnings/cxx-5
 ./config/gnu-warnings/cxx-error-5
 ./config/gnu-warnings/cxx-error-general
+./config/gnu-warnings/cxx-noerror-5
+./config/gnu-warnings/cxx-noerror-general
 ./config/gnu-warnings/developer-4.8
 ./config/gnu-warnings/developer-7
 ./config/gnu-warnings/developer-8
+./config/gnu-warnings/developer-10
 ./config/gnu-warnings/developer-general
 ./config/gnu-warnings/error-5
 ./config/gnu-warnings/error-8
@@ -180,15 +189,24 @@
 ./config/gnu-warnings/no-developer-4.8
 ./config/gnu-warnings/no-developer-8
 ./config/gnu-warnings/no-developer-general
+./config/gnu-warnings/noerror-5
+./config/gnu-warnings/noerror-8
+./config/gnu-warnings/noerror-general
 ./config/intel-warnings/ifort-general
 ./config/intel-warnings/general
 
 ./config/site-specific/BlankForm
 
+./doc/SWMRdataflow.png
+./doc/VFD_SWMR_RFC_200916.docx
+./doc/VFD_SWMR_RFC_200916.pdf
+./doc/vfd-swmr-user-guide.md
 ./doc/code-conventions.md
 
 ./examples/Attributes.txt
 ./examples/Makefile.am
+./examples/credel.c
+./examples/gaussians.c
 ./examples/h5_chunk_read.c
 ./examples/h5_compound.c
 ./examples/h5_crtgrpd.c
@@ -227,6 +245,8 @@
 ./examples/h5_vds-percival.c
 ./examples/h5_vds-percival-unlim.c
 ./examples/h5_vds-percival-unlim-maxmin.c
+./examples/nbcompat.c
+./examples/nbcompat.h
 ./examples/testh5cc.sh.in
 ./examples/README
 
@@ -502,9 +522,11 @@
 
 ./release_docs/COPYING
 ./release_docs/HISTORY-1_0-1_8_0_rc3.txt
+./release_docs/HISTORY-1_8_0-1_10_0.txt
+./release_docs/HISTORY-1_10_0-1_12_0.txt
 ./release_docs/HISTORY-1_8.txt
 ./release_docs/HISTORY-1_10.txt
-./release_docs/HISTORY-1_8_0-1_10_0.txt
+./release_docs/HISTORY-1_12.txt
 ./release_docs/INSTALL
 ./release_docs/INSTALL_CMake.txt
 ./release_docs/INSTALL_Cygwin.txt
@@ -665,6 +687,7 @@
 ./src/H5Fprivate.h
 ./src/H5Fpublic.h
 ./src/H5Ftest.c
+./src/H5Fvfd_swmr.c
 ./src/H5FA.c
 ./src/H5FAcache.c
 ./src/H5FAdbg.c
@@ -714,6 +737,10 @@
 ./src/H5FDstdio.c
 ./src/H5FDstdio.h
 ./src/H5FDtest.c
+./src/H5FDvfd_swmr_instr.c
+./src/H5FDvfd_swmr_private.h
+./src/H5FDvfd_swmr.c
+./src/H5FDvfd_swmr.h
 ./src/H5FDwindows.c
 ./src/H5FDwindows.h
 ./src/H5FL.c
@@ -779,6 +806,7 @@
 ./src/H5HGpkg.h
 ./src/H5HGprivate.h
 ./src/H5HGquery.c
+./src/H5HGtrap.c
 ./src/H5HL.c
 ./src/H5HLcache.c
 ./src/H5HLdbg.c
@@ -823,6 +851,11 @@
 ./src/H5MPpkg.h
 ./src/H5MPprivate.h
 ./src/H5MPtest.c
+./src/H5MV.c
+./src/H5MVmodule.h
+./src/H5MVsection.c
+./src/H5MVpkg.h
+./src/H5MVprivate.h
 ./src/H5O.c
 ./src/H5Oainfo.c
 ./src/H5Oalloc.c
@@ -1011,10 +1044,12 @@
 ./src/H5Zshuffle.c
 ./src/H5Zszip.c
 ./src/H5Ztrans.c
+./src/H5queue.h
+./src/H5retry_private.h
+./src/H5win32defs.h
 ./src/Makefile.am
 ./src/hdf5.h
 ./src/libhdf5.settings.in
-./src/H5win32defs.h
 
 ./test/AtomicWriterReader.txt
 ./test/COPYING
@@ -1179,6 +1214,8 @@
 # ====end distribute this for now. See HDFFV-8236====
 ./test/specmetaread.h5
 ./test/stab.c
+./test/stubs.c
+./test/supervise.subr
 ./test/swmr.c
 ./test/swmr_addrem_writer.c
 ./test/swmr_check_compat_vfd.c
@@ -1220,6 +1257,7 @@
 ./test/testmeta.c
 ./test/testswmr.sh.in
 ./test/testvdsswmr.sh.in
+./test/testvfdswmr.sh.in
 ./test/testvds_env.sh.in
 ./test/tfile.c
 ./test/tgenprop.c
@@ -1271,6 +1309,22 @@
 ./test/vds_swmr_gen.c
 ./test/vds_swmr_reader.c
 ./test/vds_swmr_writer.c
+./test/vfd_swmr.c
+./test/vfd_swmr_common.c
+./test/vfd_swmr_common.h
+./test/vfd_swmr_generator.c
+./test/vfd_swmr_addrem_writer.c
+./test/vfd_swmr_bigset_writer.c
+./test/vfd_swmr_group_writer.c
+./test/vfd_swmr_reader.c
+./test/vfd_swmr_remove_reader.c
+./test/vfd_swmr_remove_writer.c
+./test/vfd_swmr_sparse_reader.c
+./test/vfd_swmr_sparse_writer.c
+./test/vfd_swmr_vlstr_reader.c
+./test/vfd_swmr_vlstr_writer.c
+./test/vfd_swmr_writer.c
+./test/vfd_swmr_zoo_writer.c
 ./test/vfd.c
 ./test/vol.c
 ./test/vol_plugin.c
@@ -3681,3 +3735,5 @@
 ./tools/test/misc/Makefile.in
 ./tools/test/misc/vds/Makefile.in
 ./tools/test/perform/Makefile.in
+./utils/Makefile.in
+./utils/mirror_vfd/Makefile.in

Makefile.am

@@ -6,7 +6,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 ##

Makefile.dist

@@ -7,7 +7,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 

UserMacros.cmake

@@ -5,7 +5,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #

acsite.m4

@@ -8,7 +8,7 @@ dnl
 dnl This file is part of HDF5.  The full HDF5 copyright notice, including
 dnl terms governing use, modification, and redistribution, is contained in
 dnl the COPYING file, which can be found at the root of the source code
-dnl dnl distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+dnl dnl distribution tree, or in https://www.hdfgroup.org/licenses.
 dnl dnl If you do not have access to either file, you may request a copy from
 dnl dnl help@hdfgroup.org.
 dnl

autogen.sh

@@ -6,7 +6,7 @@
 # This file is part of HDF5. The full HDF5 copyright notice, including     
 # terms governing use, modification, and redistribution, is contained in   
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #

bin/COPYING

@@ -7,7 +7,7 @@
   The full HDF5 copyright notice, including terms governing use, 
   modification, and redistribution, is contained in the COPYING file
   which can be found at the root of the source code distribution tree
-  or in https://support.hdfgroup.org/ftp/HDF5/releases.  If you do
+  or in https://www.hdfgroup.org/licenses.  If you do
   not have access to either file, you may request a copy from 
   help@hdfgroup.org. 
 

bin/Makefile.am

@@ -6,7 +6,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 ##

bin/bbrelease

@@ -7,7 +7,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #

bin/buildhdf5

@@ -7,7 +7,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #

bin/checkapi

@@ -7,7 +7,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #

bin/checkposix

@@ -10,7 +10,7 @@ use warnings;
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #
@@ -44,7 +44,27 @@ foreach $arg (@ARGV) {
     #
     # If a user specifies one file, process it no matter what so people
     # can inspect files we normally skip (like H5system.c).
+
+    $ignore = 0;
+
+    # Ignored files in src/
     if($#ARGV gt 0 and $filename =~ /H5FDmulti|H5FDstdio|H5VLpassthru|H5system|H5detect|H5make_libsettings/) {
+        $ignore = 1;
+    }
+    # Ignored atomic test files in test/
+    if($#ARGV gt 0 and $filename =~ /atomic_reader|atomic_writer/) {
+        $ignore = 1;
+    }
+    # Ignored filter plugins in test/
+    if($#ARGV gt 0 and $filename =~ /^filter_plugin\d_/) {
+        $ignore = 1;
+    }
+    # Ignored generators in test/
+    if($#ARGV gt 0 and $filename =~ /^gen_/) {
+        $ignore = 1;
+    }
+
+    if($ignore) {
         print "$filename is exempt from using Standard library macro wrappers\n";
         next;
     }
@@ -95,13 +115,13 @@ foreach $arg (@ARGV) {
 
             # These are really HDF5 functions/macros even though they don't
             # start with `h' or `H'.
-            next if $name =~ /^FUNC_(ENTER|LEAVE)(_(NO)?API|_PACKAGE|_STATIC)?(_NOFS|_NOCLEAR|_NOINIT)?(_NOFUNC|_TAG)?$/;
+            next if $name =~ /^FUNC_(ENTER|LEAVE)(_(NO)?API|_PACKAGE|_STATIC)?(_NOFS|_NOCLEAR|_NOINIT|_NOPUSH)?(_NOFUNC|_TAG)?$/;
             next if $name =~ /^(BEGIN|END)_FUNC$/;
             next if $name =~ /^U?INT(8|16|32|64)(ENCODE|DECODE)(_VAR)?$/;
             next if $name =~ /^CI_(PRINT_STATS|INC_SRC|INC_DST)$/;
             next if $name =~ /^(ABS|ADDR_OVERFLOW|ALL_MEMBERS|BOUND|CONSTR|DETECT_[I|F|M]|DOWN)$/;
             next if $name =~ /^(MIN3?|MAX3?|NELMTS|POWER_OF_TWO|REGION_OVERFLOW)$/;
-            next if $name =~ /^(UNIQUE_MEMBERS|S_ISDIR)$/;
+            next if $name =~ /^(SIZE_OVERFLOW|UNIQUE_MEMBERS|S_ISDIR)$/;
             next if $name =~ /^addr_defined$/;
 
             # These functions/macros are exempt.
@@ -140,15 +160,38 @@ foreach $arg (@ARGV) {
                 next if $name =~ /^(pow_fun|round_fun|abs_fun|lround_fun|llround_fun)$/;
             }
 
+            # This is a macro parameter in H5Rint.c. Ignore it in this file.
+            if($filename =~ /H5Rint/) {
+                next if $name =~ /^(func)$/;
+            }
+
+            # Internal calls in the HDFS VFD (H5FDhdfs.c). Ignore it in this file.
+            if($filename =~ /H5FDhdfs/) {
+                next if $name =~ /^(hdfs)/;
+            }
+
+            # Macros, etc. from the mirror VFD (H5FDmirror.c). Ignore in this file.
+            if($filename =~ /H5FDmirror/) {
+                next if $name =~ /^(LOG)/;
+                next if $name =~ /^(BSWAP_64|is_host_little_endian)$/;
+            }
+
+            # These are things in H5FDs3comms.c and H5FDros3.c. Ignore them in these files.
+            if($filename =~ /H5FDs3comms|H5FDros3/) {
+                next if $name =~ /^(curl_|curlwritecallback|gmnow)/;
+                next if $name =~ /^(ros3_|ROS3_|S3COMMS_)/;
+                next if $name =~ /^(EVP_sha256|SHA256|ISO8601NOW)$/;
+            }
+
             # TESTING (not comprehensive - just noise reduction)
             
             # Test macros and functions (testhdf5.h)
             next if $name =~ /^(AddTest|TestErrPrintf|TestSummary|TestCleanup|TestShutdown)$/;
             next if $name =~ /^(CHECK|CHECK_PTR|CHECK_PTR_NULL|CHECK_PTR_EQ|CHECK_I)$/;
-            next if $name =~ /^(VERIFY|VERIFY_STR|VERIFY|TYPE|MESSAGE|ERROR)$/;
+            next if $name =~ /^(VERIFY|VERIFY_STR|VERIFY_TYPE|MESSAGE|ERROR)$/;
 
             # Test macros and functions (h5test.h)
-            next if $name =~ /^(TESTING|PASSED|SKIPPED|FAIL_PUTS_ERROR|FAIL_STACK_ERROR|TEST_ERROR)$/;
+            next if $name =~ /^(TESTING|PASSED|SKIPPED|PUTS_ERROR|FAIL_PUTS_ERROR|FAIL_STACK_ERROR|TEST_ERROR|AT)$/;
             next if $name =~ /^(GetTestExpress)$/;
 
             # Ignore functions that start with test_ or check_
@@ -158,9 +201,49 @@ foreach $arg (@ARGV) {
             # Ignore functions that start with h5_
             next if $name =~ /^h5_/;
 
+            # Ignore process completed status
+            next if $name =~ /(WIFEXITED|WEXITSTATUS|WIFSIGNALED|WTERMSIG|WCOREDUMP|WIFSTOPPED|WSTOPSIG)/;
+
             # Ignore usage functions
             next if $name =~ /^usage$/;
 
+            # Ignore callbacks
+            next if $name =~ /(_cb\d?)$/;
+
+            # Specific tests (not even remotely comprehensive)
+
+            # accum test code
+            if($filename =~ /accum/) {
+                next if $name =~ /^(accum_)/;
+            }
+
+            # cache test code
+            if($filename =~ /cache/) {
+                next if $name =~ /(_entry|_entries|_cache|_check|_dependency|_status|_op)$/;
+                next if $name =~ /^(verify_|smoke_check_|row_major_|col_major_)/;
+                next if $name =~ /^(resize_configs_are_equal|CACHE_ERROR)$/
+            }
+
+            # Splitter VFD test code. Ignore in vfd.c.
+            if($filename =~ /vfd/) {
+                next if $name =~ /^(SPLITTER_|splitter_)/;
+                next if $name =~ /(_splitter_)/;
+                next if $name =~ /^(file_exists)$/;
+            }
+
+            # S3 VFD test code. Ignore in ros3.c and s3comms.c.
+            # HDFS VFD test code. Ignore in hdfs.c.
+            if($filename =~ /ros3|s3comms|hdfs/) {
+                next if $name =~ /^(JSVERIFY|JSFAILED_|JSERR_|jserr_|FAIL_)/;
+                next if $name =~ /^(curl_)/;
+                next if $name =~ /^(S3COMMS_FORMAT_CREDENTIAL|ISO8601NOW|gmnow)$/;
+            }
+
+            # VDS test code. Ignore in vds.c.
+            if($filename =~ /vds/) {
+                next if $name =~ /^(vds_)/;
+            }
+
             print "$filename:$.: $name\n";
         }
 

bin/chkconfigure

@@ -6,7 +6,7 @@
 ## This file is part of HDF5.  The full HDF5 copyright notice, including
 ## terms governing use, modification, and redistribution, is contained in
 ## the COPYING file, which can be found at the root of the source code
-## distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+## distribution tree, or in https://www.hdfgroup.org/licenses.
 ## If you do not have access to either file, you may request a copy from
 ## help@hdfgroup.org.  
 ##

bin/chkcopyright

@@ -7,7 +7,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #

bin/chkmanifest

@@ -7,7 +7,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #

bin/compile

@@ -0,0 +1,348 @@
+#! /bin/sh
+# Wrapper for compilers which do not understand '-c -o'.
+
+scriptversion=2018-03-07.03; # UTC
+
+# Copyright (C) 1999-2018 Free Software Foundation, Inc.
+# Written by Tom Tromey <tromey@cygnus.com>.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation; either version 2, or (at your option)
+# any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+# As a special exception to the GNU General Public License, if you
+# distribute this file as part of a program that contains a
+# configuration script generated by Autoconf, you may include it under
+# the same distribution terms that you use for the rest of that program.
+
+# This file is maintained in Automake, please report
+# bugs to <bug-automake@gnu.org> or send patches to
+# <automake-patches@gnu.org>.
+
+nl='
+'
+
+# We need space, tab and new line, in precisely that order.  Quoting is
+# there to prevent tools from complaining about whitespace usage.
+IFS=" ""	$nl"
+
+file_conv=
+
+# func_file_conv build_file lazy
+# Convert a $build file to $host form and store it in $file
+# Currently only supports Windows hosts. If the determined conversion
+# type is listed in (the comma separated) LAZY, no conversion will
+# take place.
+func_file_conv ()
+{
+  file=$1
+  case $file in
+    / | /[!/]*) # absolute file, and not a UNC file
+      if test -z "$file_conv"; then
+	# lazily determine how to convert abs files
+	case `uname -s` in
+	  MINGW*)
+	    file_conv=mingw
+	    ;;
+	  CYGWIN*)
+	    file_conv=cygwin
+	    ;;
+	  *)
+	    file_conv=wine
+	    ;;
+	esac
+      fi
+      case $file_conv/,$2, in
+	*,$file_conv,*)
+	  ;;
+	mingw/*)
+	  file=`cmd //C echo "$file " | sed -e 's/"\(.*\) " *$/\1/'`
+	  ;;
+	cygwin/*)
+	  file=`cygpath -m "$file" || echo "$file"`
+	  ;;
+	wine/*)
+	  file=`winepath -w "$file" || echo "$file"`
+	  ;;
+      esac
+      ;;
+  esac
+}
+
+# func_cl_dashL linkdir
+# Make cl look for libraries in LINKDIR
+func_cl_dashL ()
+{
+  func_file_conv "$1"
+  if test -z "$lib_path"; then
+    lib_path=$file
+  else
+    lib_path="$lib_path;$file"
+  fi
+  linker_opts="$linker_opts -LIBPATH:$file"
+}
+
+# func_cl_dashl library
+# Do a library search-path lookup for cl
+func_cl_dashl ()
+{
+  lib=$1
+  found=no
+  save_IFS=$IFS
+  IFS=';'
+  for dir in $lib_path $LIB
+  do
+    IFS=$save_IFS
+    if $shared && test -f "$dir/$lib.dll.lib"; then
+      found=yes
+      lib=$dir/$lib.dll.lib
+      break
+    fi
+    if test -f "$dir/$lib.lib"; then
+      found=yes
+      lib=$dir/$lib.lib
+      break
+    fi
+    if test -f "$dir/lib$lib.a"; then
+      found=yes
+      lib=$dir/lib$lib.a
+      break
+    fi
+  done
+  IFS=$save_IFS
+
+  if test "$found" != yes; then
+    lib=$lib.lib
+  fi
+}
+
+# func_cl_wrapper cl arg...
+# Adjust compile command to suit cl
+func_cl_wrapper ()
+{
+  # Assume a capable shell
+  lib_path=
+  shared=:
+  linker_opts=
+  for arg
+  do
+    if test -n "$eat"; then
+      eat=
+    else
+      case $1 in
+	-o)
+	  # configure might choose to run compile as 'compile cc -o foo foo.c'.
+	  eat=1
+	  case $2 in
+	    *.o | *.[oO][bB][jJ])
+	      func_file_conv "$2"
+	      set x "$@" -Fo"$file"
+	      shift
+	      ;;
+	    *)
+	      func_file_conv "$2"
+	      set x "$@" -Fe"$file"
+	      shift
+	      ;;
+	  esac
+	  ;;
+	-I)
+	  eat=1
+	  func_file_conv "$2" mingw
+	  set x "$@" -I"$file"
+	  shift
+	  ;;
+	-I*)
+	  func_file_conv "${1#-I}" mingw
+	  set x "$@" -I"$file"
+	  shift
+	  ;;
+	-l)
+	  eat=1
+	  func_cl_dashl "$2"
+	  set x "$@" "$lib"
+	  shift
+	  ;;
+	-l*)
+	  func_cl_dashl "${1#-l}"
+	  set x "$@" "$lib"
+	  shift
+	  ;;
+	-L)
+	  eat=1
+	  func_cl_dashL "$2"
+	  ;;
+	-L*)
+	  func_cl_dashL "${1#-L}"
+	  ;;
+	-static)
+	  shared=false
+	  ;;
+	-Wl,*)
+	  arg=${1#-Wl,}
+	  save_ifs="$IFS"; IFS=','
+	  for flag in $arg; do
+	    IFS="$save_ifs"
+	    linker_opts="$linker_opts $flag"
+	  done
+	  IFS="$save_ifs"
+	  ;;
+	-Xlinker)
+	  eat=1
+	  linker_opts="$linker_opts $2"
+	  ;;
+	-*)
+	  set x "$@" "$1"
+	  shift
+	  ;;
+	*.cc | *.CC | *.cxx | *.CXX | *.[cC]++)
+	  func_file_conv "$1"
+	  set x "$@" -Tp"$file"
+	  shift
+	  ;;
+	*.c | *.cpp | *.CPP | *.lib | *.LIB | *.Lib | *.OBJ | *.obj | *.[oO])
+	  func_file_conv "$1" mingw
+	  set x "$@" "$file"
+	  shift
+	  ;;
+	*)
+	  set x "$@" "$1"
+	  shift
+	  ;;
+      esac
+    fi
+    shift
+  done
+  if test -n "$linker_opts"; then
+    linker_opts="-link$linker_opts"
+  fi
+  exec "$@" $linker_opts
+  exit 1
+}
+
+eat=
+
+case $1 in
+  '')
+     echo "$0: No command.  Try '$0 --help' for more information." 1>&2
+     exit 1;
+     ;;
+  -h | --h*)
+    cat <<\EOF
+Usage: compile [--help] [--version] PROGRAM [ARGS]
+
+Wrapper for compilers which do not understand '-c -o'.
+Remove '-o dest.o' from ARGS, run PROGRAM with the remaining
+arguments, and rename the output as expected.
+
+If you are trying to build a whole package this is not the
+right script to run: please start by reading the file 'INSTALL'.
+
+Report bugs to <bug-automake@gnu.org>.
+EOF
+    exit $?
+    ;;
+  -v | --v*)
+    echo "compile $scriptversion"
+    exit $?
+    ;;
+  cl | *[/\\]cl | cl.exe | *[/\\]cl.exe | \
+  icl | *[/\\]icl | icl.exe | *[/\\]icl.exe )
+    func_cl_wrapper "$@"      # Doesn't return...
+    ;;
+esac
+
+ofile=
+cfile=
+
+for arg
+do
+  if test -n "$eat"; then
+    eat=
+  else
+    case $1 in
+      -o)
+	# configure might choose to run compile as 'compile cc -o foo foo.c'.
+	# So we strip '-o arg' only if arg is an object.
+	eat=1
+	case $2 in
+	  *.o | *.obj)
+	    ofile=$2
+	    ;;
+	  *)
+	    set x "$@" -o "$2"
+	    shift
+	    ;;
+	esac
+	;;
+      *.c)
+	cfile=$1
+	set x "$@" "$1"
+	shift
+	;;
+      *)
+	set x "$@" "$1"
+	shift
+	;;
+    esac
+  fi
+  shift
+done
+
+if test -z "$ofile" || test -z "$cfile"; then
+  # If no '-o' option was seen then we might have been invoked from a
+  # pattern rule where we don't need one.  That is ok -- this is a
+  # normal compilation that the losing compiler can handle.  If no
+  # '.c' file was seen then we are probably linking.  That is also
+  # ok.
+  exec "$@"
+fi
+
+# Name of file we expect compiler to create.
+cofile=`echo "$cfile" | sed 's|^.*[\\/]||; s|^[a-zA-Z]:||; s/\.c$/.o/'`
+
+# Create the lock directory.
+# Note: use '[/\\:.-]' here to ensure that we don't use the same name
+# that we are using for the .o file.  Also, base the name on the expected
+# object file name, since that is what matters with a parallel build.
+lockdir=`echo "$cofile" | sed -e 's|[/\\:.-]|_|g'`.d
+while true; do
+  if mkdir "$lockdir" >/dev/null 2>&1; then
+    break
+  fi
+  sleep 1
+done
+# FIXME: race condition here if user kills between mkdir and trap.
+trap "rmdir '$lockdir'; exit 1" 1 2 15
+
+# Run the compile.
+"$@"
+ret=$?
+
+if test -f "$cofile"; then
+  test "$cofile" = "$ofile" || mv "$cofile" "$ofile"
+elif test -f "${cofile}bj"; then
+  test "${cofile}bj" = "$ofile" || mv "${cofile}bj" "$ofile"
+fi
+
+rmdir "$lockdir"
+exit $ret
+
+# Local Variables:
+# mode: shell-script
+# sh-indentation: 2
+# eval: (add-hook 'before-save-hook 'time-stamp)
+# time-stamp-start: "scriptversion="
+# time-stamp-format: "%:y-%02m-%02d.%02H"
+# time-stamp-time-zone: "UTC0"
+# time-stamp-end: "; # UTC"
+# End:

bin/debug-ohdr

@@ -7,7 +7,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #

bin/depcomp

@@ -0,0 +1,791 @@
+#! /bin/sh
+# depcomp - compile a program generating dependencies as side-effects
+
+scriptversion=2018-03-07.03; # UTC
+
+# Copyright (C) 1999-2018 Free Software Foundation, Inc.
+
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation; either version 2, or (at your option)
+# any later version.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+# As a special exception to the GNU General Public License, if you
+# distribute this file as part of a program that contains a
+# configuration script generated by Autoconf, you may include it under
+# the same distribution terms that you use for the rest of that program.
+
+# Originally written by Alexandre Oliva <oliva@dcc.unicamp.br>.
+
+case $1 in
+  '')
+    echo "$0: No command.  Try '$0 --help' for more information." 1>&2
+    exit 1;
+    ;;
+  -h | --h*)
+    cat <<\EOF
+Usage: depcomp [--help] [--version] PROGRAM [ARGS]
+
+Run PROGRAMS ARGS to compile a file, generating dependencies
+as side-effects.
+
+Environment variables:
+  depmode     Dependency tracking mode.
+  source      Source file read by 'PROGRAMS ARGS'.
+  object      Object file output by 'PROGRAMS ARGS'.
+  DEPDIR      directory where to store dependencies.
+  depfile     Dependency file to output.
+  tmpdepfile  Temporary file to use when outputting dependencies.
+  libtool     Whether libtool is used (yes/no).
+
+Report bugs to <bug-automake@gnu.org>.
+EOF
+    exit $?
+    ;;
+  -v | --v*)
+    echo "depcomp $scriptversion"
+    exit $?
+    ;;
+esac
+
+# Get the directory component of the given path, and save it in the
+# global variables '$dir'.  Note that this directory component will
+# be either empty or ending with a '/' character.  This is deliberate.
+set_dir_from ()
+{
+  case $1 in
+    */*) dir=`echo "$1" | sed -e 's|/[^/]*$|/|'`;;
+      *) dir=;;
+  esac
+}
+
+# Get the suffix-stripped basename of the given path, and save it the
+# global variable '$base'.
+set_base_from ()
+{
+  base=`echo "$1" | sed -e 's|^.*/||' -e 's/\.[^.]*$//'`
+}
+
+# If no dependency file was actually created by the compiler invocation,
+# we still have to create a dummy depfile, to avoid errors with the
+# Makefile "include basename.Plo" scheme.
+make_dummy_depfile ()
+{
+  echo "#dummy" > "$depfile"
+}
+
+# Factor out some common post-processing of the generated depfile.
+# Requires the auxiliary global variable '$tmpdepfile' to be set.
+aix_post_process_depfile ()
+{
+  # If the compiler actually managed to produce a dependency file,
+  # post-process it.
+  if test -f "$tmpdepfile"; then
+    # Each line is of the form 'foo.o: dependency.h'.
+    # Do two passes, one to just change these to
+    #   $object: dependency.h
+    # and one to simply output
+    #   dependency.h:
+    # which is needed to avoid the deleted-header problem.
+    { sed -e "s,^.*\.[$lower]*:,$object:," < "$tmpdepfile"
+      sed -e "s,^.*\.[$lower]*:[$tab ]*,," -e 's,$,:,' < "$tmpdepfile"
+    } > "$depfile"
+    rm -f "$tmpdepfile"
+  else
+    make_dummy_depfile
+  fi
+}
+
+# A tabulation character.
+tab='	'
+# A newline character.
+nl='
+'
+# Character ranges might be problematic outside the C locale.
+# These definitions help.
+upper=ABCDEFGHIJKLMNOPQRSTUVWXYZ
+lower=abcdefghijklmnopqrstuvwxyz
+digits=0123456789
+alpha=${upper}${lower}
+
+if test -z "$depmode" || test -z "$source" || test -z "$object"; then
+  echo "depcomp: Variables source, object and depmode must be set" 1>&2
+  exit 1
+fi
+
+# Dependencies for sub/bar.o or sub/bar.obj go into sub/.deps/bar.Po.
+depfile=${depfile-`echo "$object" |
+  sed 's|[^\\/]*$|'${DEPDIR-.deps}'/&|;s|\.\([^.]*\)$|.P\1|;s|Pobj$|Po|'`}
+tmpdepfile=${tmpdepfile-`echo "$depfile" | sed 's/\.\([^.]*\)$/.T\1/'`}
+
+rm -f "$tmpdepfile"
+
+# Avoid interferences from the environment.
+gccflag= dashmflag=
+
+# Some modes work just like other modes, but use different flags.  We
+# parameterize here, but still list the modes in the big case below,
+# to make depend.m4 easier to write.  Note that we *cannot* use a case
+# here, because this file can only contain one case statement.
+if test "$depmode" = hp; then
+  # HP compiler uses -M and no extra arg.
+  gccflag=-M
+  depmode=gcc
+fi
+
+if test "$depmode" = dashXmstdout; then
+  # This is just like dashmstdout with a different argument.
+  dashmflag=-xM
+  depmode=dashmstdout
+fi
+
+cygpath_u="cygpath -u -f -"
+if test "$depmode" = msvcmsys; then
+  # This is just like msvisualcpp but w/o cygpath translation.
+  # Just convert the backslash-escaped backslashes to single forward
+  # slashes to satisfy depend.m4
+  cygpath_u='sed s,\\\\,/,g'
+  depmode=msvisualcpp
+fi
+
+if test "$depmode" = msvc7msys; then
+  # This is just like msvc7 but w/o cygpath translation.
+  # Just convert the backslash-escaped backslashes to single forward
+  # slashes to satisfy depend.m4
+  cygpath_u='sed s,\\\\,/,g'
+  depmode=msvc7
+fi
+
+if test "$depmode" = xlc; then
+  # IBM C/C++ Compilers xlc/xlC can output gcc-like dependency information.
+  gccflag=-qmakedep=gcc,-MF
+  depmode=gcc
+fi
+
+case "$depmode" in
+gcc3)
+## gcc 3 implements dependency tracking that does exactly what
+## we want.  Yay!  Note: for some reason libtool 1.4 doesn't like
+## it if -MD -MP comes after the -MF stuff.  Hmm.
+## Unfortunately, FreeBSD c89 acceptance of flags depends upon
+## the command line argument order; so add the flags where they
+## appear in depend2.am.  Note that the slowdown incurred here
+## affects only configure: in makefiles, %FASTDEP% shortcuts this.
+  for arg
+  do
+    case $arg in
+    -c) set fnord "$@" -MT "$object" -MD -MP -MF "$tmpdepfile" "$arg" ;;
+    *)  set fnord "$@" "$arg" ;;
+    esac
+    shift # fnord
+    shift # $arg
+  done
+  "$@"
+  stat=$?
+  if test $stat -ne 0; then
+    rm -f "$tmpdepfile"
+    exit $stat
+  fi
+  mv "$tmpdepfile" "$depfile"
+  ;;
+
+gcc)
+## Note that this doesn't just cater to obsosete pre-3.x GCC compilers.
+## but also to in-use compilers like IMB xlc/xlC and the HP C compiler.
+## (see the conditional assignment to $gccflag above).
+## There are various ways to get dependency output from gcc.  Here's
+## why we pick this rather obscure method:
+## - Don't want to use -MD because we'd like the dependencies to end
+##   up in a subdir.  Having to rename by hand is ugly.
+##   (We might end up doing this anyway to support other compilers.)
+## - The DEPENDENCIES_OUTPUT environment variable makes gcc act like
+##   -MM, not -M (despite what the docs say).  Also, it might not be
+##   supported by the other compilers which use the 'gcc' depmode.
+## - Using -M directly means running the compiler twice (even worse
+##   than renaming).
+  if test -z "$gccflag"; then
+    gccflag=-MD,
+  fi
+  "$@" -Wp,"$gccflag$tmpdepfile"
+  stat=$?
+  if test $stat -ne 0; then
+    rm -f "$tmpdepfile"
+    exit $stat
+  fi
+  rm -f "$depfile"
+  echo "$object : \\" > "$depfile"
+  # The second -e expression handles DOS-style file names with drive
+  # letters.
+  sed -e 's/^[^:]*: / /' \
+      -e 's/^['$alpha']:\/[^:]*: / /' < "$tmpdepfile" >> "$depfile"
+## This next piece of magic avoids the "deleted header file" problem.
+## The problem is that when a header file which appears in a .P file
+## is deleted, the dependency causes make to die (because there is
+## typically no way to rebuild the header).  We avoid this by adding
+## dummy dependencies for each header file.  Too bad gcc doesn't do
+## this for us directly.
+## Some versions of gcc put a space before the ':'.  On the theory
+## that the space means something, we add a space to the output as
+## well.  hp depmode also adds that space, but also prefixes the VPATH
+## to the object.  Take care to not repeat it in the output.
+## Some versions of the HPUX 10.20 sed can't process this invocation
+## correctly.  Breaking it into two sed invocations is a workaround.
+  tr ' ' "$nl" < "$tmpdepfile" \
+    | sed -e 's/^\\$//' -e '/^$/d' -e "s|.*$object$||" -e '/:$/d' \
+    | sed -e 's/$/ :/' >> "$depfile"
+  rm -f "$tmpdepfile"
+  ;;
+
+hp)
+  # This case exists only to let depend.m4 do its work.  It works by
+  # looking at the text of this script.  This case will never be run,
+  # since it is checked for above.
+  exit 1
+  ;;
+
+sgi)
+  if test "$libtool" = yes; then
+    "$@" "-Wp,-MDupdate,$tmpdepfile"
+  else
+    "$@" -MDupdate "$tmpdepfile"
+  fi
+  stat=$?
+  if test $stat -ne 0; then
+    rm -f "$tmpdepfile"
+    exit $stat
+  fi
+  rm -f "$depfile"
+
+  if test -f "$tmpdepfile"; then  # yes, the sourcefile depend on other files
+    echo "$object : \\" > "$depfile"
+    # Clip off the initial element (the dependent).  Don't try to be
+    # clever and replace this with sed code, as IRIX sed won't handle
+    # lines with more than a fixed number of characters (4096 in
+    # IRIX 6.2 sed, 8192 in IRIX 6.5).  We also remove comment lines;
+    # the IRIX cc adds comments like '#:fec' to the end of the
+    # dependency line.
+    tr ' ' "$nl" < "$tmpdepfile" \
+      | sed -e 's/^.*\.o://' -e 's/#.*$//' -e '/^$/ d' \
+      | tr "$nl" ' ' >> "$depfile"
+    echo >> "$depfile"
+    # The second pass generates a dummy entry for each header file.
+    tr ' ' "$nl" < "$tmpdepfile" \
+      | sed -e 's/^.*\.o://' -e 's/#.*$//' -e '/^$/ d' -e 's/$/:/' \
+      >> "$depfile"
+  else
+    make_dummy_depfile
+  fi
+  rm -f "$tmpdepfile"
+  ;;
+
+xlc)
+  # This case exists only to let depend.m4 do its work.  It works by
+  # looking at the text of this script.  This case will never be run,
+  # since it is checked for above.
+  exit 1
+  ;;
+
+aix)
+  # The C for AIX Compiler uses -M and outputs the dependencies
+  # in a .u file.  In older versions, this file always lives in the
+  # current directory.  Also, the AIX compiler puts '$object:' at the
+  # start of each line; $object doesn't have directory information.
+  # Version 6 uses the directory in both cases.
+  set_dir_from "$object"
+  set_base_from "$object"
+  if test "$libtool" = yes; then
+    tmpdepfile1=$dir$base.u
+    tmpdepfile2=$base.u
+    tmpdepfile3=$dir.libs/$base.u
+    "$@" -Wc,-M
+  else
+    tmpdepfile1=$dir$base.u
+    tmpdepfile2=$dir$base.u
+    tmpdepfile3=$dir$base.u
+    "$@" -M
+  fi
+  stat=$?
+  if test $stat -ne 0; then
+    rm -f "$tmpdepfile1" "$tmpdepfile2" "$tmpdepfile3"
+    exit $stat
+  fi
+
+  for tmpdepfile in "$tmpdepfile1" "$tmpdepfile2" "$tmpdepfile3"
+  do
+    test -f "$tmpdepfile" && break
+  done
+  aix_post_process_depfile
+  ;;
+
+tcc)
+  # tcc (Tiny C Compiler) understand '-MD -MF file' since version 0.9.26
+  # FIXME: That version still under development at the moment of writing.
+  #        Make that this statement remains true also for stable, released
+  #        versions.
+  # It will wrap lines (doesn't matter whether long or short) with a
+  # trailing '\', as in:
+  #
+  #   foo.o : \
+  #    foo.c \
+  #    foo.h \
+  #
+  # It will put a trailing '\' even on the last line, and will use leading
+  # spaces rather than leading tabs (at least since its commit 0394caf7
+  # "Emit spaces for -MD").
+  "$@" -MD -MF "$tmpdepfile"
+  stat=$?
+  if test $stat -ne 0; then
+    rm -f "$tmpdepfile"
+    exit $stat
+  fi
+  rm -f "$depfile"
+  # Each non-empty line is of the form 'foo.o : \' or ' dep.h \'.
+  # We have to change lines of the first kind to '$object: \'.
+  sed -e "s|.*:|$object :|" < "$tmpdepfile" > "$depfile"
+  # And for each line of the second kind, we have to emit a 'dep.h:'
+  # dummy dependency, to avoid the deleted-header problem.
+  sed -n -e 's|^  *\(.*\) *\\$|\1:|p' < "$tmpdepfile" >> "$depfile"
+  rm -f "$tmpdepfile"
+  ;;
+
+## The order of this option in the case statement is important, since the
+## shell code in configure will try each of these formats in the order
+## listed in this file.  A plain '-MD' option would be understood by many
+## compilers, so we must ensure this comes after the gcc and icc options.
+pgcc)
+  # Portland's C compiler understands '-MD'.
+  # Will always output deps to 'file.d' where file is the root name of the
+  # source file under compilation, even if file resides in a subdirectory.
+  # The object file name does not affect the name of the '.d' file.
+  # pgcc 10.2 will output
+  #    foo.o: sub/foo.c sub/foo.h
+  # and will wrap long lines using '\' :
+  #    foo.o: sub/foo.c ... \
+  #     sub/foo.h ... \
+  #     ...
+  set_dir_from "$object"
+  # Use the source, not the object, to determine the base name, since
+  # that's sadly what pgcc will do too.
+  set_base_from "$source"
+  tmpdepfile=$base.d
+
+  # For projects that build the same source file twice into different object
+  # files, the pgcc approach of using the *source* file root name can cause
+  # problems in parallel builds.  Use a locking strategy to avoid stomping on
+  # the same $tmpdepfile.
+  lockdir=$base.d-lock
+  trap "
+    echo '$0: caught signal, cleaning up...' >&2
+    rmdir '$lockdir'
+    exit 1
+  " 1 2 13 15
+  numtries=100
+  i=$numtries
+  while test $i -gt 0; do
+    # mkdir is a portable test-and-set.
+    if mkdir "$lockdir" 2>/dev/null; then
+      # This process acquired the lock.
+      "$@" -MD
+      stat=$?
+      # Release the lock.
+      rmdir "$lockdir"
+      break
+    else
+      # If the lock is being held by a different process, wait
+      # until the winning process is done or we timeout.
+      while test -d "$lockdir" && test $i -gt 0; do
+        sleep 1
+        i=`expr $i - 1`
+      done
+    fi
+    i=`expr $i - 1`
+  done
+  trap - 1 2 13 15
+  if test $i -le 0; then
+    echo "$0: failed to acquire lock after $numtries attempts" >&2
+    echo "$0: check lockdir '$lockdir'" >&2
+    exit 1
+  fi
+
+  if test $stat -ne 0; then
+    rm -f "$tmpdepfile"
+    exit $stat
+  fi
+  rm -f "$depfile"
+  # Each line is of the form `foo.o: dependent.h',
+  # or `foo.o: dep1.h dep2.h \', or ` dep3.h dep4.h \'.
+  # Do two passes, one to just change these to
+  # `$object: dependent.h' and one to simply `dependent.h:'.
+  sed "s,^[^:]*:,$object :," < "$tmpdepfile" > "$depfile"
+  # Some versions of the HPUX 10.20 sed can't process this invocation
+  # correctly.  Breaking it into two sed invocations is a workaround.
+  sed 's,^[^:]*: \(.*\)$,\1,;s/^\\$//;/^$/d;/:$/d' < "$tmpdepfile" \
+    | sed -e 's/$/ :/' >> "$depfile"
+  rm -f "$tmpdepfile"
+  ;;
+
+hp2)
+  # The "hp" stanza above does not work with aCC (C++) and HP's ia64
+  # compilers, which have integrated preprocessors.  The correct option
+  # to use with these is +Maked; it writes dependencies to a file named
+  # 'foo.d', which lands next to the object file, wherever that
+  # happens to be.
+  # Much of this is similar to the tru64 case; see comments there.
+  set_dir_from  "$object"
+  set_base_from "$object"
+  if test "$libtool" = yes; then
+    tmpdepfile1=$dir$base.d
+    tmpdepfile2=$dir.libs/$base.d
+    "$@" -Wc,+Maked
+  else
+    tmpdepfile1=$dir$base.d
+    tmpdepfile2=$dir$base.d
+    "$@" +Maked
+  fi
+  stat=$?
+  if test $stat -ne 0; then
+     rm -f "$tmpdepfile1" "$tmpdepfile2"
+     exit $stat
+  fi
+
+  for tmpdepfile in "$tmpdepfile1" "$tmpdepfile2"
+  do
+    test -f "$tmpdepfile" && break
+  done
+  if test -f "$tmpdepfile"; then
+    sed -e "s,^.*\.[$lower]*:,$object:," "$tmpdepfile" > "$depfile"
+    # Add 'dependent.h:' lines.
+    sed -ne '2,${
+               s/^ *//
+               s/ \\*$//
+               s/$/:/
+               p
+             }' "$tmpdepfile" >> "$depfile"
+  else
+    make_dummy_depfile
+  fi
+  rm -f "$tmpdepfile" "$tmpdepfile2"
+  ;;
+
+tru64)
+  # The Tru64 compiler uses -MD to generate dependencies as a side
+  # effect.  'cc -MD -o foo.o ...' puts the dependencies into 'foo.o.d'.
+  # At least on Alpha/Redhat 6.1, Compaq CCC V6.2-504 seems to put
+  # dependencies in 'foo.d' instead, so we check for that too.
+  # Subdirectories are respected.
+  set_dir_from  "$object"
+  set_base_from "$object"
+
+  if test "$libtool" = yes; then
+    # Libtool generates 2 separate objects for the 2 libraries.  These
+    # two compilations output dependencies in $dir.libs/$base.o.d and
+    # in $dir$base.o.d.  We have to check for both files, because
+    # one of the two compilations can be disabled.  We should prefer
+    # $dir$base.o.d over $dir.libs/$base.o.d because the latter is
+    # automatically cleaned when .libs/ is deleted, while ignoring
+    # the former would cause a distcleancheck panic.
+    tmpdepfile1=$dir$base.o.d          # libtool 1.5
+    tmpdepfile2=$dir.libs/$base.o.d    # Likewise.
+    tmpdepfile3=$dir.libs/$base.d      # Compaq CCC V6.2-504
+    "$@" -Wc,-MD
+  else
+    tmpdepfile1=$dir$base.d
+    tmpdepfile2=$dir$base.d
+    tmpdepfile3=$dir$base.d
+    "$@" -MD
+  fi
+
+  stat=$?
+  if test $stat -ne 0; then
+    rm -f "$tmpdepfile1" "$tmpdepfile2" "$tmpdepfile3"
+    exit $stat
+  fi
+
+  for tmpdepfile in "$tmpdepfile1" "$tmpdepfile2" "$tmpdepfile3"
+  do
+    test -f "$tmpdepfile" && break
+  done
+  # Same post-processing that is required for AIX mode.
+  aix_post_process_depfile
+  ;;
+
+msvc7)
+  if test "$libtool" = yes; then
+    showIncludes=-Wc,-showIncludes
+  else
+    showIncludes=-showIncludes
+  fi
+  "$@" $showIncludes > "$tmpdepfile"
+  stat=$?
+  grep -v '^Note: including file: ' "$tmpdepfile"
+  if test $stat -ne 0; then
+    rm -f "$tmpdepfile"
+    exit $stat
+  fi
+  rm -f "$depfile"
+  echo "$object : \\" > "$depfile"
+  # The first sed program below extracts the file names and escapes
+  # backslashes for cygpath.  The second sed program outputs the file
+  # name when reading, but also accumulates all include files in the
+  # hold buffer in order to output them again at the end.  This only
+  # works with sed implementations that can handle large buffers.
+  sed < "$tmpdepfile" -n '
+/^Note: including file:  *\(.*\)/ {
+  s//\1/
+  s/\\/\\\\/g
+  p
+}' | $cygpath_u | sort -u | sed -n '
+s/ /\\ /g
+s/\(.*\)/'"$tab"'\1 \\/p
+s/.\(.*\) \\/\1:/
+H
+$ {
+  s/.*/'"$tab"'/
+  G
+  p
+}' >> "$depfile"
+  echo >> "$depfile" # make sure the fragment doesn't end with a backslash
+  rm -f "$tmpdepfile"
+  ;;
+
+msvc7msys)
+  # This case exists only to let depend.m4 do its work.  It works by
+  # looking at the text of this script.  This case will never be run,
+  # since it is checked for above.
+  exit 1
+  ;;
+
+#nosideeffect)
+  # This comment above is used by automake to tell side-effect
+  # dependency tracking mechanisms from slower ones.
+
+dashmstdout)
+  # Important note: in order to support this mode, a compiler *must*
+  # always write the preprocessed file to stdout, regardless of -o.
+  "$@" || exit $?
+
+  # Remove the call to Libtool.
+  if test "$libtool" = yes; then
+    while test "X$1" != 'X--mode=compile'; do
+      shift
+    done
+    shift
+  fi
+
+  # Remove '-o $object'.
+  IFS=" "
+  for arg
+  do
+    case $arg in
+    -o)
+      shift
+      ;;
+    $object)
+      shift
+      ;;
+    *)
+      set fnord "$@" "$arg"
+      shift # fnord
+      shift # $arg
+      ;;
+    esac
+  done
+
+  test -z "$dashmflag" && dashmflag=-M
+  # Require at least two characters before searching for ':'
+  # in the target name.  This is to cope with DOS-style filenames:
+  # a dependency such as 'c:/foo/bar' could be seen as target 'c' otherwise.
+  "$@" $dashmflag |
+    sed "s|^[$tab ]*[^:$tab ][^:][^:]*:[$tab ]*|$object: |" > "$tmpdepfile"
+  rm -f "$depfile"
+  cat < "$tmpdepfile" > "$depfile"
+  # Some versions of the HPUX 10.20 sed can't process this sed invocation
+  # correctly.  Breaking it into two sed invocations is a workaround.
+  tr ' ' "$nl" < "$tmpdepfile" \
+    | sed -e 's/^\\$//' -e '/^$/d' -e '/:$/d' \
+    | sed -e 's/$/ :/' >> "$depfile"
+  rm -f "$tmpdepfile"
+  ;;
+
+dashXmstdout)
+  # This case only exists to satisfy depend.m4.  It is never actually
+  # run, as this mode is specially recognized in the preamble.
+  exit 1
+  ;;
+
+makedepend)
+  "$@" || exit $?
+  # Remove any Libtool call
+  if test "$libtool" = yes; then
+    while test "X$1" != 'X--mode=compile'; do
+      shift
+    done
+    shift
+  fi
+  # X makedepend
+  shift
+  cleared=no eat=no
+  for arg
+  do
+    case $cleared in
+    no)
+      set ""; shift
+      cleared=yes ;;
+    esac
+    if test $eat = yes; then
+      eat=no
+      continue
+    fi
+    case "$arg" in
+    -D*|-I*)
+      set fnord "$@" "$arg"; shift ;;
+    # Strip any option that makedepend may not understand.  Remove
+    # the object too, otherwise makedepend will parse it as a source file.
+    -arch)
+      eat=yes ;;
+    -*|$object)
+      ;;
+    *)
+      set fnord "$@" "$arg"; shift ;;
+    esac
+  done
+  obj_suffix=`echo "$object" | sed 's/^.*\././'`
+  touch "$tmpdepfile"
+  ${MAKEDEPEND-makedepend} -o"$obj_suffix" -f"$tmpdepfile" "$@"
+  rm -f "$depfile"
+  # makedepend may prepend the VPATH from the source file name to the object.
+  # No need to regex-escape $object, excess matching of '.' is harmless.
+  sed "s|^.*\($object *:\)|\1|" "$tmpdepfile" > "$depfile"
+  # Some versions of the HPUX 10.20 sed can't process the last invocation
+  # correctly.  Breaking it into two sed invocations is a workaround.
+  sed '1,2d' "$tmpdepfile" \
+    | tr ' ' "$nl" \
+    | sed -e 's/^\\$//' -e '/^$/d' -e '/:$/d' \
+    | sed -e 's/$/ :/' >> "$depfile"
+  rm -f "$tmpdepfile" "$tmpdepfile".bak
+  ;;
+
+cpp)
+  # Important note: in order to support this mode, a compiler *must*
+  # always write the preprocessed file to stdout.
+  "$@" || exit $?
+
+  # Remove the call to Libtool.
+  if test "$libtool" = yes; then
+    while test "X$1" != 'X--mode=compile'; do
+      shift
+    done
+    shift
+  fi
+
+  # Remove '-o $object'.
+  IFS=" "
+  for arg
+  do
+    case $arg in
+    -o)
+      shift
+      ;;
+    $object)
+      shift
+      ;;
+    *)
+      set fnord "$@" "$arg"
+      shift # fnord
+      shift # $arg
+      ;;
+    esac
+  done
+
+  "$@" -E \
+    | sed -n -e '/^# [0-9][0-9]* "\([^"]*\)".*/ s:: \1 \\:p' \
+             -e '/^#line [0-9][0-9]* "\([^"]*\)".*/ s:: \1 \\:p' \
+    | sed '$ s: \\$::' > "$tmpdepfile"
+  rm -f "$depfile"
+  echo "$object : \\" > "$depfile"
+  cat < "$tmpdepfile" >> "$depfile"
+  sed < "$tmpdepfile" '/^$/d;s/^ //;s/ \\$//;s/$/ :/' >> "$depfile"
+  rm -f "$tmpdepfile"
+  ;;
+
+msvisualcpp)
+  # Important note: in order to support this mode, a compiler *must*
+  # always write the preprocessed file to stdout.
+  "$@" || exit $?
+
+  # Remove the call to Libtool.
+  if test "$libtool" = yes; then
+    while test "X$1" != 'X--mode=compile'; do
+      shift
+    done
+    shift
+  fi
+
+  IFS=" "
+  for arg
+  do
+    case "$arg" in
+    -o)
+      shift
+      ;;
+    $object)
+      shift
+      ;;
+    "-Gm"|"/Gm"|"-Gi"|"/Gi"|"-ZI"|"/ZI")
+        set fnord "$@"
+        shift
+        shift
+        ;;
+    *)
+        set fnord "$@" "$arg"
+        shift
+        shift
+        ;;
+    esac
+  done
+  "$@" -E 2>/dev/null |
+  sed -n '/^#line [0-9][0-9]* "\([^"]*\)"/ s::\1:p' | $cygpath_u | sort -u > "$tmpdepfile"
+  rm -f "$depfile"
+  echo "$object : \\" > "$depfile"
+  sed < "$tmpdepfile" -n -e 's% %\\ %g' -e '/^\(.*\)$/ s::'"$tab"'\1 \\:p' >> "$depfile"
+  echo "$tab" >> "$depfile"
+  sed < "$tmpdepfile" -n -e 's% %\\ %g' -e '/^\(.*\)$/ s::\1\::p' >> "$depfile"
+  rm -f "$tmpdepfile"
+  ;;
+
+msvcmsys)
+  # This case exists only to let depend.m4 do its work.  It works by
+  # looking at the text of this script.  This case will never be run,
+  # since it is checked for above.
+  exit 1
+  ;;
+
+none)
+  exec "$@"
+  ;;
+
+*)
+  echo "Unknown depmode $depmode" 1>&2
+  exit 1
+  ;;
+esac
+
+exit 0
+
+# Local Variables:
+# mode: shell-script
+# sh-indentation: 2
+# eval: (add-hook 'before-save-hook 'time-stamp)
+# time-stamp-start: "scriptversion="
+# time-stamp-format: "%:y-%02m-%02d.%02H"
+# time-stamp-time-zone: "UTC0"
+# time-stamp-end: "; # UTC"
+# End:

bin/dependencies

@@ -7,7 +7,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #

bin/deploy

@@ -7,7 +7,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #

bin/distdep

@@ -10,7 +10,7 @@ eval 'exec perl -p -x -S $0 ${1+"$@"}'
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #

bin/errors

@@ -13,11 +13,11 @@ use Text::Tabs;
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #
-# Robb Matzke, matzke@llnl.gov
+# Robb Matzke
 # 30 Aug 1997
 #
 # Purpose: This script will read standard input which should be a

bin/format_source

@@ -0,0 +1,26 @@
+#!/bin/bash
+#
+# Recursively format all C & C++ sources and header files, except those in the
+# 'config' directory and generated files, such as H5LTanalyze.c, etc.
+#
+# Note that any files or directories that are excluded here should also be
+# added to the 'exclude' list in .github/workflows/clang-format-check.yml
+#
+# (Remember to update both bin/format_source and bin/format_source_patch)
+
+find . \( -type d -path ./config -prune -and -not -path ./config \) \
+    -or \( \( \! \( \
+        -name H5LTanalyze.c \
+        -or -name H5LTparse.c \
+        -or -name H5LTparse.h \
+        -or -name H5Epubgen.h \
+        -or -name H5Einit.h \
+        -or -name H5Eterm.h \
+        -or -name H5Edefin.h \
+        -or -name H5version.h \
+        -or -name H5overflow.h \
+        \) \) \
+    -and \( -iname *.h -or -iname *.c -or -iname *.cpp -or -iname *.hpp \) \) \
+    | xargs clang-format -style=file -i -fallback-style=none
+
+exit 0

bin/format_source_patch

@@ -0,0 +1,34 @@
+#!/bin/bash
+#
+# Recursively format all C & C++ sources and header files, except those in the
+# 'config' directory and generated files, such as H5LTanalyze.c, etc.
+#
+# Note that any files or directories that are excluded here should also be
+# added to the 'exclude' list in .github/workflows/clang-format-check.yml
+#
+# (Remember to update both bin/format_source and bin/format_source_patch)
+
+find . \( -type d -path ./config -prune -and -not -path ./config \) \
+    -or \( \( \! \( \
+        -name H5LTanalyze.c \
+        -or -name H5LTparse.c \
+        -or -name H5LTparse.h \
+        -or -name H5Epubgen.h \
+        -or -name H5Einit.h \
+        -or -name H5Eterm.h \
+        -or -name H5Edefin.h \
+        -or -name H5version.h \
+        -or -name H5overflow.h \
+        \) \) \
+    -and \( -iname *.h -or -iname *.c -or -iname *.cpp -or -iname *.hpp \) \) \
+    | xargs clang-format -style=file -i -fallback-style=none
+
+git diff > clang_format.patch
+
+# Delete if 0 size
+if [ ! -s clang_format.patch ]
+then
+    rm clang_format.patch
+fi
+
+exit 0

bin/gcov_script

@@ -7,7 +7,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 

bin/genparser

@@ -1,12 +1,12 @@
 #! /bin/bash
 #
-# Copyright by The HDF Group.                                              
-# All rights reserved.                                                     
-#                                                                          
-# This file is part of HDF5. The full HDF5 copyright notice, including     
-# terms governing use, modification, and redistribution, is contained in   
+# Copyright by The HDF Group.
+# All rights reserved.
+#
+# This file is part of HDF5. The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #
@@ -200,28 +200,34 @@ if [ "$verbose" = true ] ; then
 fi
 ${HDF5_FLEX} --nounistd -PH5LTyy -o ${path_to_hl_src}/H5LTanalyze.c ${path_to_hl_src}/H5LTanalyze.l
 
-# fix H5LTparse.c to declare H5LTyyparse return type as an hid_t
-# instead of int.  Currently the generated function H5LTyyparse is
+# fix H5LTparse.c and H5LTlparse.h to declare H5LTyyparse return type as an
+# hid_t instead of int.  Currently the generated function H5LTyyparse is
 # generated with a return value of type int, which is a mapping to the
 # flex yyparse function.  The return value in the HL library should be
-# an hid_t. 
-# I propose to not use flex to generate this function, but for now I am 
+# an hid_t.
+# I propose to not use flex to generate this function, but for now I am
 # adding a perl command to find and replace this function declaration in
 # H5LTparse.c.
 perl -0777 -pi -e 's/int yyparse/hid_t yyparse/igs' ${path_to_hl_src}/H5LTparse.c
 perl -0777 -pi -e 's/int\nyyparse/hid_t\nyyparse/igs' ${path_to_hl_src}/H5LTparse.c
 perl -0777 -pi -e 's/int H5LTyyparse/hid_t H5LTyyparse/igs' ${path_to_hl_src}/H5LTparse.c
+perl -0777 -pi -e 's/int yyparse/hid_t yyparse/igs' ${path_to_hl_src}/H5LTparse.h
+perl -0777 -pi -e 's/int\nyyparse/hid_t\nyyparse/igs' ${path_to_hl_src}/H5LTparse.h
+perl -0777 -pi -e 's/int H5LTyyparse/hid_t H5LTyyparse/igs' ${path_to_hl_src}/H5LTparse.h
 
 # Add code that disables warnings in the flex/bison-generated code.
 #
 # Note that the GCC pragmas did not exist until gcc 4.2. Earlier versions
 # will simply ignore them, but we want to avoid those warnings.
+#
+# Note also that although clang defines __GNUC__, it doesn't support every
+# warning that GCC does.
 for f in ${path_to_hl_src}/H5LTparse.c ${path_to_hl_src}/H5LTanalyze.c
 do
-    echo '#if defined __GNUC__ && 402 <= __GNUC__ * 100 + __GNUC_MINOR__    ' >> tmp.out
+    echo '#if defined (__GNUC__)                                            ' >> tmp.out
+    echo '#if ((__GNUC__ * 100) + __GNUC_MINOR__) >= 402                    ' >> tmp.out
     echo '#pragma GCC diagnostic ignored "-Wconversion"                     ' >> tmp.out
     echo '#pragma GCC diagnostic ignored "-Wimplicit-function-declaration"  ' >> tmp.out
-    echo '#pragma GCC diagnostic ignored "-Wlarger-than="                   ' >> tmp.out
     echo '#pragma GCC diagnostic ignored "-Wmissing-prototypes"             ' >> tmp.out
     echo '#pragma GCC diagnostic ignored "-Wnested-externs"                 ' >> tmp.out
     echo '#pragma GCC diagnostic ignored "-Wold-style-definition"           ' >> tmp.out
@@ -230,11 +236,19 @@ do
     echo '#pragma GCC diagnostic ignored "-Wsign-conversion"                ' >> tmp.out
     echo '#pragma GCC diagnostic ignored "-Wstrict-overflow"                ' >> tmp.out
     echo '#pragma GCC diagnostic ignored "-Wstrict-prototypes"              ' >> tmp.out
+    echo '#if !defined (__clang__)                                          ' >> tmp.out
+    echo '#pragma GCC diagnostic ignored "-Wlarger-than="                   ' >> tmp.out
+    echo '#pragma GCC diagnostic ignored "-Wsuggest-attribute=const"        ' >> tmp.out
     echo '#pragma GCC diagnostic ignored "-Wsuggest-attribute=pure"         ' >> tmp.out
+    echo '#endif                                                            ' >> tmp.out
     echo '#pragma GCC diagnostic ignored "-Wswitch-default"                 ' >> tmp.out
     echo '#pragma GCC diagnostic ignored "-Wunused-function"                ' >> tmp.out
     echo '#pragma GCC diagnostic ignored "-Wunused-macros"                  ' >> tmp.out
     echo '#pragma GCC diagnostic ignored "-Wunused-parameter"               ' >> tmp.out
+    echo '#endif                                                            ' >> tmp.out
+    echo '#if ((__GNUC__ * 100) + __GNUC_MINOR__) >= 600                    ' >> tmp.out
+    echo '#pragma GCC diagnostic ignored "-Wnull-dereference"               ' >> tmp.out
+    echo '#endif                                                            ' >> tmp.out
     echo '#elif defined __SUNPRO_CC                                         ' >> tmp.out
     echo '#pragma disable_warn                                              ' >> tmp.out
     echo '#elif defined _MSC_VER                                            ' >> tmp.out

bin/h5cc.in

@@ -7,7 +7,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 ##

bin/h5redeploy.in

@@ -7,7 +7,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #

bin/h5vers

@@ -13,11 +13,11 @@ use strict;
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #
-# Robb Matzke <matzke@llnl.gov>
+# Robb Matzke
 # 17 July 1998
 
 ### Purpose

bin/install-sh

@@ -0,0 +1,518 @@
+#!/bin/sh
+# install - install a program, script, or datafile
+
+scriptversion=2018-03-11.20; # UTC
+
+# This originates from X11R5 (mit/util/scripts/install.sh), which was
+# later released in X11R6 (xc/config/util/install.sh) with the
+# following copyright and license.
+#
+# Copyright (C) 1994 X Consortium
+#
+# Permission is hereby granted, free of charge, to any person obtaining a copy
+# of this software and associated documentation files (the "Software"), to
+# deal in the Software without restriction, including without limitation the
+# rights to use, copy, modify, merge, publish, distribute, sublicense, and/or
+# sell copies of the Software, and to permit persons to whom the Software is
+# furnished to do so, subject to the following conditions:
+#
+# The above copyright notice and this permission notice shall be included in
+# all copies or substantial portions of the Software.
+#
+# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.  IN NO EVENT SHALL THE
+# X CONSORTIUM BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN
+# AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNEC-
+# TION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
+#
+# Except as contained in this notice, the name of the X Consortium shall not
+# be used in advertising or otherwise to promote the sale, use or other deal-
+# ings in this Software without prior written authorization from the X Consor-
+# tium.
+#
+#
+# FSF changes to this file are in the public domain.
+#
+# Calling this script install-sh is preferred over install.sh, to prevent
+# 'make' implicit rules from creating a file called install from it
+# when there is no Makefile.
+#
+# This script is compatible with the BSD install script, but was written
+# from scratch.
+
+tab='	'
+nl='
+'
+IFS=" $tab$nl"
+
+# Set DOITPROG to "echo" to test this script.
+
+doit=${DOITPROG-}
+doit_exec=${doit:-exec}
+
+# Put in absolute file names if you don't have them in your path;
+# or use environment vars.
+
+chgrpprog=${CHGRPPROG-chgrp}
+chmodprog=${CHMODPROG-chmod}
+chownprog=${CHOWNPROG-chown}
+cmpprog=${CMPPROG-cmp}
+cpprog=${CPPROG-cp}
+mkdirprog=${MKDIRPROG-mkdir}
+mvprog=${MVPROG-mv}
+rmprog=${RMPROG-rm}
+stripprog=${STRIPPROG-strip}
+
+posix_mkdir=
+
+# Desired mode of installed file.
+mode=0755
+
+chgrpcmd=
+chmodcmd=$chmodprog
+chowncmd=
+mvcmd=$mvprog
+rmcmd="$rmprog -f"
+stripcmd=
+
+src=
+dst=
+dir_arg=
+dst_arg=
+
+copy_on_change=false
+is_target_a_directory=possibly
+
+usage="\
+Usage: $0 [OPTION]... [-T] SRCFILE DSTFILE
+   or: $0 [OPTION]... SRCFILES... DIRECTORY
+   or: $0 [OPTION]... -t DIRECTORY SRCFILES...
+   or: $0 [OPTION]... -d DIRECTORIES...
+
+In the 1st form, copy SRCFILE to DSTFILE.
+In the 2nd and 3rd, copy all SRCFILES to DIRECTORY.
+In the 4th, create DIRECTORIES.
+
+Options:
+     --help     display this help and exit.
+     --version  display version info and exit.
+
+  -c            (ignored)
+  -C            install only if different (preserve the last data modification time)
+  -d            create directories instead of installing files.
+  -g GROUP      $chgrpprog installed files to GROUP.
+  -m MODE       $chmodprog installed files to MODE.
+  -o USER       $chownprog installed files to USER.
+  -s            $stripprog installed files.
+  -t DIRECTORY  install into DIRECTORY.
+  -T            report an error if DSTFILE is a directory.
+
+Environment variables override the default commands:
+  CHGRPPROG CHMODPROG CHOWNPROG CMPPROG CPPROG MKDIRPROG MVPROG
+  RMPROG STRIPPROG
+"
+
+while test $# -ne 0; do
+  case $1 in
+    -c) ;;
+
+    -C) copy_on_change=true;;
+
+    -d) dir_arg=true;;
+
+    -g) chgrpcmd="$chgrpprog $2"
+        shift;;
+
+    --help) echo "$usage"; exit $?;;
+
+    -m) mode=$2
+        case $mode in
+          *' '* | *"$tab"* | *"$nl"* | *'*'* | *'?'* | *'['*)
+            echo "$0: invalid mode: $mode" >&2
+            exit 1;;
+        esac
+        shift;;
+
+    -o) chowncmd="$chownprog $2"
+        shift;;
+
+    -s) stripcmd=$stripprog;;
+
+    -t)
+        is_target_a_directory=always
+        dst_arg=$2
+        # Protect names problematic for 'test' and other utilities.
+        case $dst_arg in
+          -* | [=\(\)!]) dst_arg=./$dst_arg;;
+        esac
+        shift;;
+
+    -T) is_target_a_directory=never;;
+
+    --version) echo "$0 $scriptversion"; exit $?;;
+
+    --) shift
+        break;;
+
+    -*) echo "$0: invalid option: $1" >&2
+        exit 1;;
+
+    *)  break;;
+  esac
+  shift
+done
+
+# We allow the use of options -d and -T together, by making -d
+# take the precedence; this is for compatibility with GNU install.
+
+if test -n "$dir_arg"; then
+  if test -n "$dst_arg"; then
+    echo "$0: target directory not allowed when installing a directory." >&2
+    exit 1
+  fi
+fi
+
+if test $# -ne 0 && test -z "$dir_arg$dst_arg"; then
+  # When -d is used, all remaining arguments are directories to create.
+  # When -t is used, the destination is already specified.
+  # Otherwise, the last argument is the destination.  Remove it from $@.
+  for arg
+  do
+    if test -n "$dst_arg"; then
+      # $@ is not empty: it contains at least $arg.
+      set fnord "$@" "$dst_arg"
+      shift # fnord
+    fi
+    shift # arg
+    dst_arg=$arg
+    # Protect names problematic for 'test' and other utilities.
+    case $dst_arg in
+      -* | [=\(\)!]) dst_arg=./$dst_arg;;
+    esac
+  done
+fi
+
+if test $# -eq 0; then
+  if test -z "$dir_arg"; then
+    echo "$0: no input file specified." >&2
+    exit 1
+  fi
+  # It's OK to call 'install-sh -d' without argument.
+  # This can happen when creating conditional directories.
+  exit 0
+fi
+
+if test -z "$dir_arg"; then
+  if test $# -gt 1 || test "$is_target_a_directory" = always; then
+    if test ! -d "$dst_arg"; then
+      echo "$0: $dst_arg: Is not a directory." >&2
+      exit 1
+    fi
+  fi
+fi
+
+if test -z "$dir_arg"; then
+  do_exit='(exit $ret); exit $ret'
+  trap "ret=129; $do_exit" 1
+  trap "ret=130; $do_exit" 2
+  trap "ret=141; $do_exit" 13
+  trap "ret=143; $do_exit" 15
+
+  # Set umask so as not to create temps with too-generous modes.
+  # However, 'strip' requires both read and write access to temps.
+  case $mode in
+    # Optimize common cases.
+    *644) cp_umask=133;;
+    *755) cp_umask=22;;
+
+    *[0-7])
+      if test -z "$stripcmd"; then
+        u_plus_rw=
+      else
+        u_plus_rw='% 200'
+      fi
+      cp_umask=`expr '(' 777 - $mode % 1000 ')' $u_plus_rw`;;
+    *)
+      if test -z "$stripcmd"; then
+        u_plus_rw=
+      else
+        u_plus_rw=,u+rw
+      fi
+      cp_umask=$mode$u_plus_rw;;
+  esac
+fi
+
+for src
+do
+  # Protect names problematic for 'test' and other utilities.
+  case $src in
+    -* | [=\(\)!]) src=./$src;;
+  esac
+
+  if test -n "$dir_arg"; then
+    dst=$src
+    dstdir=$dst
+    test -d "$dstdir"
+    dstdir_status=$?
+  else
+
+    # Waiting for this to be detected by the "$cpprog $src $dsttmp" command
+    # might cause directories to be created, which would be especially bad
+    # if $src (and thus $dsttmp) contains '*'.
+    if test ! -f "$src" && test ! -d "$src"; then
+      echo "$0: $src does not exist." >&2
+      exit 1
+    fi
+
+    if test -z "$dst_arg"; then
+      echo "$0: no destination specified." >&2
+      exit 1
+    fi
+    dst=$dst_arg
+
+    # If destination is a directory, append the input filename.
+    if test -d "$dst"; then
+      if test "$is_target_a_directory" = never; then
+        echo "$0: $dst_arg: Is a directory" >&2
+        exit 1
+      fi
+      dstdir=$dst
+      dstbase=`basename "$src"`
+      case $dst in
+	*/) dst=$dst$dstbase;;
+	*)  dst=$dst/$dstbase;;
+      esac
+      dstdir_status=0
+    else
+      dstdir=`dirname "$dst"`
+      test -d "$dstdir"
+      dstdir_status=$?
+    fi
+  fi
+
+  case $dstdir in
+    */) dstdirslash=$dstdir;;
+    *)  dstdirslash=$dstdir/;;
+  esac
+
+  obsolete_mkdir_used=false
+
+  if test $dstdir_status != 0; then
+    case $posix_mkdir in
+      '')
+        # Create intermediate dirs using mode 755 as modified by the umask.
+        # This is like FreeBSD 'install' as of 1997-10-28.
+        umask=`umask`
+        case $stripcmd.$umask in
+          # Optimize common cases.
+          *[2367][2367]) mkdir_umask=$umask;;
+          .*0[02][02] | .[02][02] | .[02]) mkdir_umask=22;;
+
+          *[0-7])
+            mkdir_umask=`expr $umask + 22 \
+              - $umask % 100 % 40 + $umask % 20 \
+              - $umask % 10 % 4 + $umask % 2
+            `;;
+          *) mkdir_umask=$umask,go-w;;
+        esac
+
+        # With -d, create the new directory with the user-specified mode.
+        # Otherwise, rely on $mkdir_umask.
+        if test -n "$dir_arg"; then
+          mkdir_mode=-m$mode
+        else
+          mkdir_mode=
+        fi
+
+        posix_mkdir=false
+        case $umask in
+          *[123567][0-7][0-7])
+            # POSIX mkdir -p sets u+wx bits regardless of umask, which
+            # is incompatible with FreeBSD 'install' when (umask & 300) != 0.
+            ;;
+          *)
+            # Note that $RANDOM variable is not portable (e.g. dash);  Use it
+            # here however when possible just to lower collision chance.
+            tmpdir=${TMPDIR-/tmp}/ins$RANDOM-$$
+
+            trap 'ret=$?; rmdir "$tmpdir/a/b" "$tmpdir/a" "$tmpdir" 2>/dev/null; exit $ret' 0
+
+            # Because "mkdir -p" follows existing symlinks and we likely work
+            # directly in world-writeable /tmp, make sure that the '$tmpdir'
+            # directory is successfully created first before we actually test
+            # 'mkdir -p' feature.
+            if (umask $mkdir_umask &&
+                $mkdirprog $mkdir_mode "$tmpdir" &&
+                exec $mkdirprog $mkdir_mode -p -- "$tmpdir/a/b") >/dev/null 2>&1
+            then
+              if test -z "$dir_arg" || {
+                   # Check for POSIX incompatibilities with -m.
+                   # HP-UX 11.23 and IRIX 6.5 mkdir -m -p sets group- or
+                   # other-writable bit of parent directory when it shouldn't.
+                   # FreeBSD 6.1 mkdir -m -p sets mode of existing directory.
+                   test_tmpdir="$tmpdir/a"
+                   ls_ld_tmpdir=`ls -ld "$test_tmpdir"`
+                   case $ls_ld_tmpdir in
+                     d????-?r-*) different_mode=700;;
+                     d????-?--*) different_mode=755;;
+                     *) false;;
+                   esac &&
+                   $mkdirprog -m$different_mode -p -- "$test_tmpdir" && {
+                     ls_ld_tmpdir_1=`ls -ld "$test_tmpdir"`
+                     test "$ls_ld_tmpdir" = "$ls_ld_tmpdir_1"
+                   }
+                 }
+              then posix_mkdir=:
+              fi
+              rmdir "$tmpdir/a/b" "$tmpdir/a" "$tmpdir"
+            else
+              # Remove any dirs left behind by ancient mkdir implementations.
+              rmdir ./$mkdir_mode ./-p ./-- "$tmpdir" 2>/dev/null
+            fi
+            trap '' 0;;
+        esac;;
+    esac
+
+    if
+      $posix_mkdir && (
+        umask $mkdir_umask &&
+        $doit_exec $mkdirprog $mkdir_mode -p -- "$dstdir"
+      )
+    then :
+    else
+
+      # The umask is ridiculous, or mkdir does not conform to POSIX,
+      # or it failed possibly due to a race condition.  Create the
+      # directory the slow way, step by step, checking for races as we go.
+
+      case $dstdir in
+        /*) prefix='/';;
+        [-=\(\)!]*) prefix='./';;
+        *)  prefix='';;
+      esac
+
+      oIFS=$IFS
+      IFS=/
+      set -f
+      set fnord $dstdir
+      shift
+      set +f
+      IFS=$oIFS
+
+      prefixes=
+
+      for d
+      do
+        test X"$d" = X && continue
+
+        prefix=$prefix$d
+        if test -d "$prefix"; then
+          prefixes=
+        else
+          if $posix_mkdir; then
+            (umask=$mkdir_umask &&
+             $doit_exec $mkdirprog $mkdir_mode -p -- "$dstdir") && break
+            # Don't fail if two instances are running concurrently.
+            test -d "$prefix" || exit 1
+          else
+            case $prefix in
+              *\'*) qprefix=`echo "$prefix" | sed "s/'/'\\\\\\\\''/g"`;;
+              *) qprefix=$prefix;;
+            esac
+            prefixes="$prefixes '$qprefix'"
+          fi
+        fi
+        prefix=$prefix/
+      done
+
+      if test -n "$prefixes"; then
+        # Don't fail if two instances are running concurrently.
+        (umask $mkdir_umask &&
+         eval "\$doit_exec \$mkdirprog $prefixes") ||
+          test -d "$dstdir" || exit 1
+        obsolete_mkdir_used=true
+      fi
+    fi
+  fi
+
+  if test -n "$dir_arg"; then
+    { test -z "$chowncmd" || $doit $chowncmd "$dst"; } &&
+    { test -z "$chgrpcmd" || $doit $chgrpcmd "$dst"; } &&
+    { test "$obsolete_mkdir_used$chowncmd$chgrpcmd" = false ||
+      test -z "$chmodcmd" || $doit $chmodcmd $mode "$dst"; } || exit 1
+  else
+
+    # Make a couple of temp file names in the proper directory.
+    dsttmp=${dstdirslash}_inst.$$_
+    rmtmp=${dstdirslash}_rm.$$_
+
+    # Trap to clean up those temp files at exit.
+    trap 'ret=$?; rm -f "$dsttmp" "$rmtmp" && exit $ret' 0
+
+    # Copy the file name to the temp name.
+    (umask $cp_umask && $doit_exec $cpprog "$src" "$dsttmp") &&
+
+    # and set any options; do chmod last to preserve setuid bits.
+    #
+    # If any of these fail, we abort the whole thing.  If we want to
+    # ignore errors from any of these, just make sure not to ignore
+    # errors from the above "$doit $cpprog $src $dsttmp" command.
+    #
+    { test -z "$chowncmd" || $doit $chowncmd "$dsttmp"; } &&
+    { test -z "$chgrpcmd" || $doit $chgrpcmd "$dsttmp"; } &&
+    { test -z "$stripcmd" || $doit $stripcmd "$dsttmp"; } &&
+    { test -z "$chmodcmd" || $doit $chmodcmd $mode "$dsttmp"; } &&
+
+    # If -C, don't bother to copy if it wouldn't change the file.
+    if $copy_on_change &&
+       old=`LC_ALL=C ls -dlL "$dst"     2>/dev/null` &&
+       new=`LC_ALL=C ls -dlL "$dsttmp"  2>/dev/null` &&
+       set -f &&
+       set X $old && old=:$2:$4:$5:$6 &&
+       set X $new && new=:$2:$4:$5:$6 &&
+       set +f &&
+       test "$old" = "$new" &&
+       $cmpprog "$dst" "$dsttmp" >/dev/null 2>&1
+    then
+      rm -f "$dsttmp"
+    else
+      # Rename the file to the real destination.
+      $doit $mvcmd -f "$dsttmp" "$dst" 2>/dev/null ||
+
+      # The rename failed, perhaps because mv can't rename something else
+      # to itself, or perhaps because mv is so ancient that it does not
+      # support -f.
+      {
+        # Now remove or move aside any old file at destination location.
+        # We try this two ways since rm can't unlink itself on some
+        # systems and the destination file might be busy for other
+        # reasons.  In this case, the final cleanup might fail but the new
+        # file should still install successfully.
+        {
+          test ! -f "$dst" ||
+          $doit $rmcmd -f "$dst" 2>/dev/null ||
+          { $doit $mvcmd -f "$dst" "$rmtmp" 2>/dev/null &&
+            { $doit $rmcmd -f "$rmtmp" 2>/dev/null; :; }
+          } ||
+          { echo "$0: cannot unlink or rename $dst" >&2
+            (exit 1); exit 1
+          }
+        } &&
+
+        # Now rename the file to the real destination.
+        $doit $mvcmd "$dsttmp" "$dst"
+      }
+    fi || exit 1
+
+    trap '' 0
+  fi
+done
+
+# Local variables:
+# eval: (add-hook 'before-save-hook 'time-stamp)
+# time-stamp-start: "scriptversion="
+# time-stamp-format: "%:y-%02m-%02d.%02H"
+# time-stamp-time-zone: "UTC0"
+# time-stamp-end: "; # UTC"
+# End:

bin/iostats

@@ -7,7 +7,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #

bin/locate_sw

@@ -7,7 +7,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #

bin/make_err

@@ -11,7 +11,7 @@ use warnings;
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #
@@ -38,7 +38,7 @@ sub print_copyright ($) {
     print $fh " * This file is part of HDF5.  The full HDF5 copyright notice, including     *\n";
     print $fh " * terms governing use, modification, and redistribution, is contained in    *\n";
     print $fh " * the COPYING file, which can be found at the root of the source code       *\n";
-    print $fh " * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *\n";
+    print $fh " * distribution tree, or in https://www.hdfgroup.org/licenses.               *\n";
     print $fh " * If you do not have access to either file, you may request a copy from     *\n";
     print $fh " * help\@hdfgroup.org.                                                        *\n";
     print $fh " * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */\n";
@@ -64,8 +64,8 @@ sub print_startprotect ($$) {
     $file =~ s/(\w*)\.h/$1/;
 
     # Print the ifdef info
-    print $fh "\n#ifndef _${file}_H\n";
-    print $fh "#define _${file}_H\n";
+    print $fh "\n#ifndef ${file}_H\n";
+    print $fh "#define ${file}_H\n";
 }
 
 ##############################################################################

bin/make_overflow

@@ -16,7 +16,7 @@ my @ctypes = ( () );
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #
@@ -67,7 +67,7 @@ sub print_copyright ($) {
     print $fh " * This file is part of HDF5.  The full HDF5 copyright notice, including     *\n";
     print $fh " * terms governing use, modification, and redistribution, is contained in    *\n";
     print $fh " * the COPYING file, which can be found at the root of the source code       *\n";
-    print $fh " * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *\n";
+    print $fh " * distribution tree, or in https://www.hdfgroup.org/licenses.               *\n";
     print $fh " * If you do not have access to either file, you may request a copy from     *\n";
     print $fh " * help\@hdfgroup.org.                                                        *\n";
     print $fh " * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */\n";
@@ -93,8 +93,8 @@ sub print_startprotect ($$) {
     $file =~ s/(\w*)\.h/$1/;
 
     # Print the ifdef info
-    print $fh "\n#ifndef _${file}_H\n";
-    print $fh "#define _${file}_H\n";
+    print $fh "\n#ifndef ${file}_H\n";
+    print $fh "#define ${file}_H\n";
 }
 
 ##############################################################################

bin/make_vers

@@ -25,7 +25,7 @@ $indent = 2;
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #
@@ -52,7 +52,7 @@ sub print_copyright ($) {
     print $fh " * This file is part of HDF5.  The full HDF5 copyright notice, including     *\n";
     print $fh " * terms governing use, modification, and redistribution, is contained in    *\n";
     print $fh " * the COPYING file, which can be found at the root of the source code       *\n";
-    print $fh " * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *\n";
+    print $fh " * distribution tree, or in https://www.hdfgroup.org/licenses.               *\n";
     print $fh " * If you do not have access to either file, you may request a copy from     *\n";
     print $fh " * help\@hdfgroup.org.                                                        *\n";
     print $fh " * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */\n";
@@ -78,8 +78,8 @@ sub print_startprotect ($$) {
     $file =~ s/(\w*)\.h/$1/;
 
     # Print the ifdef info
-    print $fh "\n#ifndef _${file}_H\n";
-    print $fh "#define _${file}_H\n";
+    print $fh "\n#ifndef ${file}_H\n";
+    print $fh "#define ${file}_H\n";
 }
 
 ##############################################################################

bin/missing

@@ -0,0 +1,215 @@
+#! /bin/sh
+# Common wrapper for a few potentially missing GNU programs.
+
+scriptversion=2018-03-07.03; # UTC
+
+# Copyright (C) 1996-2018 Free Software Foundation, Inc.
+# Originally written by Fran,cois Pinard <pinard@iro.umontreal.ca>, 1996.
+
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation; either version 2, or (at your option)
+# any later version.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+# As a special exception to the GNU General Public License, if you
+# distribute this file as part of a program that contains a
+# configuration script generated by Autoconf, you may include it under
+# the same distribution terms that you use for the rest of that program.
+
+if test $# -eq 0; then
+  echo 1>&2 "Try '$0 --help' for more information"
+  exit 1
+fi
+
+case $1 in
+
+  --is-lightweight)
+    # Used by our autoconf macros to check whether the available missing
+    # script is modern enough.
+    exit 0
+    ;;
+
+  --run)
+    # Back-compat with the calling convention used by older automake.
+    shift
+    ;;
+
+  -h|--h|--he|--hel|--help)
+    echo "\
+$0 [OPTION]... PROGRAM [ARGUMENT]...
+
+Run 'PROGRAM [ARGUMENT]...', returning a proper advice when this fails due
+to PROGRAM being missing or too old.
+
+Options:
+  -h, --help      display this help and exit
+  -v, --version   output version information and exit
+
+Supported PROGRAM values:
+  aclocal   autoconf  autoheader   autom4te  automake  makeinfo
+  bison     yacc      flex         lex       help2man
+
+Version suffixes to PROGRAM as well as the prefixes 'gnu-', 'gnu', and
+'g' are ignored when checking the name.
+
+Send bug reports to <bug-automake@gnu.org>."
+    exit $?
+    ;;
+
+  -v|--v|--ve|--ver|--vers|--versi|--versio|--version)
+    echo "missing $scriptversion (GNU Automake)"
+    exit $?
+    ;;
+
+  -*)
+    echo 1>&2 "$0: unknown '$1' option"
+    echo 1>&2 "Try '$0 --help' for more information"
+    exit 1
+    ;;
+
+esac
+
+# Run the given program, remember its exit status.
+"$@"; st=$?
+
+# If it succeeded, we are done.
+test $st -eq 0 && exit 0
+
+# Also exit now if we it failed (or wasn't found), and '--version' was
+# passed; such an option is passed most likely to detect whether the
+# program is present and works.
+case $2 in --version|--help) exit $st;; esac
+
+# Exit code 63 means version mismatch.  This often happens when the user
+# tries to use an ancient version of a tool on a file that requires a
+# minimum version.
+if test $st -eq 63; then
+  msg="probably too old"
+elif test $st -eq 127; then
+  # Program was missing.
+  msg="missing on your system"
+else
+  # Program was found and executed, but failed.  Give up.
+  exit $st
+fi
+
+perl_URL=https://www.perl.org/
+flex_URL=https://github.com/westes/flex
+gnu_software_URL=https://www.gnu.org/software
+
+program_details ()
+{
+  case $1 in
+    aclocal|automake)
+      echo "The '$1' program is part of the GNU Automake package:"
+      echo "<$gnu_software_URL/automake>"
+      echo "It also requires GNU Autoconf, GNU m4 and Perl in order to run:"
+      echo "<$gnu_software_URL/autoconf>"
+      echo "<$gnu_software_URL/m4/>"
+      echo "<$perl_URL>"
+      ;;
+    autoconf|autom4te|autoheader)
+      echo "The '$1' program is part of the GNU Autoconf package:"
+      echo "<$gnu_software_URL/autoconf/>"
+      echo "It also requires GNU m4 and Perl in order to run:"
+      echo "<$gnu_software_URL/m4/>"
+      echo "<$perl_URL>"
+      ;;
+  esac
+}
+
+give_advice ()
+{
+  # Normalize program name to check for.
+  normalized_program=`echo "$1" | sed '
+    s/^gnu-//; t
+    s/^gnu//; t
+    s/^g//; t'`
+
+  printf '%s\n' "'$1' is $msg."
+
+  configure_deps="'configure.ac' or m4 files included by 'configure.ac'"
+  case $normalized_program in
+    autoconf*)
+      echo "You should only need it if you modified 'configure.ac',"
+      echo "or m4 files included by it."
+      program_details 'autoconf'
+      ;;
+    autoheader*)
+      echo "You should only need it if you modified 'acconfig.h' or"
+      echo "$configure_deps."
+      program_details 'autoheader'
+      ;;
+    automake*)
+      echo "You should only need it if you modified 'Makefile.am' or"
+      echo "$configure_deps."
+      program_details 'automake'
+      ;;
+    aclocal*)
+      echo "You should only need it if you modified 'acinclude.m4' or"
+      echo "$configure_deps."
+      program_details 'aclocal'
+      ;;
+   autom4te*)
+      echo "You might have modified some maintainer files that require"
+      echo "the 'autom4te' program to be rebuilt."
+      program_details 'autom4te'
+      ;;
+    bison*|yacc*)
+      echo "You should only need it if you modified a '.y' file."
+      echo "You may want to install the GNU Bison package:"
+      echo "<$gnu_software_URL/bison/>"
+      ;;
+    lex*|flex*)
+      echo "You should only need it if you modified a '.l' file."
+      echo "You may want to install the Fast Lexical Analyzer package:"
+      echo "<$flex_URL>"
+      ;;
+    help2man*)
+      echo "You should only need it if you modified a dependency" \
+           "of a man page."
+      echo "You may want to install the GNU Help2man package:"
+      echo "<$gnu_software_URL/help2man/>"
+    ;;
+    makeinfo*)
+      echo "You should only need it if you modified a '.texi' file, or"
+      echo "any other file indirectly affecting the aspect of the manual."
+      echo "You might want to install the Texinfo package:"
+      echo "<$gnu_software_URL/texinfo/>"
+      echo "The spurious makeinfo call might also be the consequence of"
+      echo "using a buggy 'make' (AIX, DU, IRIX), in which case you might"
+      echo "want to install GNU make:"
+      echo "<$gnu_software_URL/make/>"
+      ;;
+    *)
+      echo "You might have modified some files without having the proper"
+      echo "tools for further handling them.  Check the 'README' file, it"
+      echo "often tells you about the needed prerequisites for installing"
+      echo "this package.  You may also peek at any GNU archive site, in"
+      echo "case some other package contains this missing '$1' program."
+      ;;
+  esac
+}
+
+give_advice "$1" | sed -e '1s/^/WARNING: /' \
+                       -e '2,$s/^/         /' >&2
+
+# Propagate the correct exit status (expected to be 127 for a program
+# not found, 63 for a program that failed due to version mismatch).
+exit $st
+
+# Local variables:
+# eval: (add-hook 'before-save-hook 'time-stamp)
+# time-stamp-start: "scriptversion="
+# time-stamp-format: "%:y-%02m-%02d.%02H"
+# time-stamp-time-zone: "UTC0"
+# time-stamp-end: "; # UTC"
+# End:

bin/mkdirs

@@ -7,7 +7,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #

bin/newer

@@ -7,7 +7,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #

bin/output_filter.sh

@@ -4,7 +4,7 @@
 ## This file is part of HDF5.  The full HDF5 copyright notice, including
 ## terms governing use, modification, and redistribution, is contained in
 ## the COPYING file, which can be found at the root of the source code
-## distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+## distribution tree, or in https://www.hdfgroup.org/licenses.
 ## If you do not have access to either file, you may request a copy from
 ## help@hdfgroup.org.
 

bin/pkgscrpts/h5rmflags

@@ -7,7 +7,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #

bin/pkgscrpts/makeHDF5BinaryTarfiles.pl

@@ -8,7 +8,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #

bin/release

@@ -7,7 +7,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #

bin/restore.sh

@@ -6,7 +6,7 @@
 # This file is part of HDF5. The full HDF5 copyright notice, including     
 # terms governing use, modification, and redistribution, is contained in   
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #

bin/runbkgprog

@@ -11,7 +11,7 @@ $indent=4;
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #

bin/runtest

@@ -7,7 +7,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #

bin/snapshot

@@ -7,7 +7,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 

bin/snapshot_version

@@ -6,7 +6,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #

bin/switch_maint_mode

@@ -7,7 +7,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #

bin/test-driver

@@ -0,0 +1,148 @@
+#! /bin/sh
+# test-driver - basic testsuite driver script.
+
+scriptversion=2018-03-07.03; # UTC
+
+# Copyright (C) 2011-2018 Free Software Foundation, Inc.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation; either version 2, or (at your option)
+# any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+# As a special exception to the GNU General Public License, if you
+# distribute this file as part of a program that contains a
+# configuration script generated by Autoconf, you may include it under
+# the same distribution terms that you use for the rest of that program.
+
+# This file is maintained in Automake, please report
+# bugs to <bug-automake@gnu.org> or send patches to
+# <automake-patches@gnu.org>.
+
+# Make unconditional expansion of undefined variables an error.  This
+# helps a lot in preventing typo-related bugs.
+set -u
+
+usage_error ()
+{
+  echo "$0: $*" >&2
+  print_usage >&2
+  exit 2
+}
+
+print_usage ()
+{
+  cat <<END
+Usage:
+  test-driver --test-name=NAME --log-file=PATH --trs-file=PATH
+              [--expect-failure={yes|no}] [--color-tests={yes|no}]
+              [--enable-hard-errors={yes|no}] [--]
+              TEST-SCRIPT [TEST-SCRIPT-ARGUMENTS]
+The '--test-name', '--log-file' and '--trs-file' options are mandatory.
+END
+}
+
+test_name= # Used for reporting.
+log_file=  # Where to save the output of the test script.
+trs_file=  # Where to save the metadata of the test run.
+expect_failure=no
+color_tests=no
+enable_hard_errors=yes
+while test $# -gt 0; do
+  case $1 in
+  --help) print_usage; exit $?;;
+  --version) echo "test-driver $scriptversion"; exit $?;;
+  --test-name) test_name=$2; shift;;
+  --log-file) log_file=$2; shift;;
+  --trs-file) trs_file=$2; shift;;
+  --color-tests) color_tests=$2; shift;;
+  --expect-failure) expect_failure=$2; shift;;
+  --enable-hard-errors) enable_hard_errors=$2; shift;;
+  --) shift; break;;
+  -*) usage_error "invalid option: '$1'";;
+   *) break;;
+  esac
+  shift
+done
+
+missing_opts=
+test x"$test_name" = x && missing_opts="$missing_opts --test-name"
+test x"$log_file"  = x && missing_opts="$missing_opts --log-file"
+test x"$trs_file"  = x && missing_opts="$missing_opts --trs-file"
+if test x"$missing_opts" != x; then
+  usage_error "the following mandatory options are missing:$missing_opts"
+fi
+
+if test $# -eq 0; then
+  usage_error "missing argument"
+fi
+
+if test $color_tests = yes; then
+  # Keep this in sync with 'lib/am/check.am:$(am__tty_colors)'.
+  red='' # Red.
+  grn='' # Green.
+  lgn='' # Light green.
+  blu='' # Blue.
+  mgn='' # Magenta.
+  std=''     # No color.
+else
+  red= grn= lgn= blu= mgn= std=
+fi
+
+do_exit='rm -f $log_file $trs_file; (exit $st); exit $st'
+trap "st=129; $do_exit" 1
+trap "st=130; $do_exit" 2
+trap "st=141; $do_exit" 13
+trap "st=143; $do_exit" 15
+
+# Test script is run here.
+"$@" >$log_file 2>&1
+estatus=$?
+
+if test $enable_hard_errors = no && test $estatus -eq 99; then
+  tweaked_estatus=1
+else
+  tweaked_estatus=$estatus
+fi
+
+case $tweaked_estatus:$expect_failure in
+  0:yes) col=$red res=XPASS recheck=yes gcopy=yes;;
+  0:*)   col=$grn res=PASS  recheck=no  gcopy=no;;
+  77:*)  col=$blu res=SKIP  recheck=no  gcopy=yes;;
+  99:*)  col=$mgn res=ERROR recheck=yes gcopy=yes;;
+  *:yes) col=$lgn res=XFAIL recheck=no  gcopy=yes;;
+  *:*)   col=$red res=FAIL  recheck=yes gcopy=yes;;
+esac
+
+# Report the test outcome and exit status in the logs, so that one can
+# know whether the test passed or failed simply by looking at the '.log'
+# file, without the need of also peaking into the corresponding '.trs'
+# file (automake bug#11814).
+echo "$res $test_name (exit status: $estatus)" >>$log_file
+
+# Report outcome to console.
+echo "${col}${res}${std}: $test_name"
+
+# Register the test result, and other relevant metadata.
+echo ":test-result: $res" > $trs_file
+echo ":global-test-result: $res" >> $trs_file
+echo ":recheck: $recheck" >> $trs_file
+echo ":copy-in-global-log: $gcopy" >> $trs_file
+
+# Local Variables:
+# mode: shell-script
+# sh-indentation: 2
+# eval: (add-hook 'before-save-hook 'time-stamp)
+# time-stamp-start: "scriptversion="
+# time-stamp-format: "%:y-%02m-%02d.%02H"
+# time-stamp-time-zone: "UTC0"
+# time-stamp-end: "; # UTC"
+# End:

bin/timekeeper

@@ -7,7 +7,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 ##

bin/trace

@@ -7,7 +7,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 ##
@@ -154,6 +154,7 @@ $Source = "";
                "H5F_info1_t"                => "x",
                "H5F_info2_t"                => "x",
                "H5F_retry_info_t"           => "x",
+               "H5F_vfd_swmr_config_t"      => "x",
                "H5FD_t"                     => "x",
                "H5FD_class_t"               => "x",
                "H5FD_stream_fapl_t"         => "x",

bin/warnhist

@@ -15,7 +15,7 @@ use warnings;
 # http://hdfgroup.org/HDF5/doc/Copyright.html.  If you do not have
 # access to either file, you may request a copy from help@hdfgroup.org.
 #
-# Quincey Koziol, koziol@hdfgroup.org
+# Quincey Koziol
 #  9 Aug 2013
 #
 # Purpose: Given an input file containing the output from a build of the
@@ -30,10 +30,13 @@ use Getopt::Std;
 
 # Global variables, for accumulating information
 my $totalcount = 0;
+my $notecount = 0;
+my $dupcount = 0;
 my %warn_count = ();
 my $warncount;
 my %warn_file = ();
 my %warn_file_line = ();
+my %warn_file_line_offset = ();
 my %file_count = ();
 my $filecount;
 my $ignorecount = 0;
@@ -48,10 +51,13 @@ my %file_warn_line = ();
 my $current_warning = 0;
 my $current_file = 0;
 my $warn_index;
+my $genericize = 1;
+
+# Info about last name / line / offset for file
 my $last_c_name;
 my $last_fort_name;
 my $last_fort_line;
-my $genericize = 1;
+my $last_fort_offset;
 
 # Display usage
 sub do_help {
@@ -98,7 +104,7 @@ if($options{h}) {
 # Parse list of file names to ignore
 if(exists $options{i}) {
     @ignorenames = split /,/, $options{i};
-#print @ignorenames;
+#print STDERR @ignorenames;
 }
 
 # Parse list of warning indices to expand file names
@@ -106,18 +112,18 @@ if(exists $options{w}) {
     my @tmp_indices;
 
     @tmp_indices = split /,/, $options{w};
-#print @tmp_indices;
+#print STDERR @tmp_indices;
     for my $x (@tmp_indices) {
-#print "x = '$x'\n";
+#print STDERR "x = '$x'\n";
         if($x =~ /\-/) {
             my $start_index;
             my $end_index;
 
-#print "matched = '$x'\n";
+#print STDERR "matched = '$x'\n";
             ($start_index, $end_index) = split /\-/, $x;
-#print "start_index = '$start_index', end_index = '$end_index'\n";
+#print STDERR "start_index = '$start_index', end_index = '$end_index'\n";
             for my $y ($start_index..$end_index) {
-#print "y = '$y'\n";
+#print STDERR "y = '$y'\n";
                 if(!exists $warn_file_indices{$y}) {
                     $warn_file_indices{$y} = $y;
                 }
@@ -130,14 +136,14 @@ if(exists $options{w}) {
         }
     }
 #foreach (sort keys %warn_file_indices) {
-#    print "$_ : $warn_file_indices{$_}\n";
+#    print STDERR "$_ : $warn_file_indices{$_}\n";
 #}
 }
 
 # Parse list of warning strings to expand file names
 if(exists $options{s}) {
     @warn_match_strings = split /,/, $options{s};
-# print @warn_match_strings;
+# print STDERR @warn_match_strings;
 }
 
 # Parse list of file indices to expand warnings
@@ -145,18 +151,18 @@ if(exists $options{f}) {
     my @tmp_indices;
 
     @tmp_indices = split /,/, $options{f};
-#print @tmp_indices;
+#print STDERR @tmp_indices;
     for my $x (@tmp_indices) {
-#print "x = '$x'\n";
+#print STDERR "x = '$x'\n";
         if($x =~ /\-/) {
             my $start_index;
             my $end_index;
 
-#print "matched = '$x'\n";
+#print STDERR "matched = '$x'\n";
             ($start_index, $end_index) = split /\-/, $x;
-#print "start_index = '$start_index', end_index = '$end_index'\n";
+#print STDERR "start_index = '$start_index', end_index = '$end_index'\n";
             for my $y ($start_index..$end_index) {
-#print "y = '$y'\n";
+#print STDERR "y = '$y'\n";
                 if(!exists $file_warn_indices{$y}) {
                     $file_warn_indices{$y} = $y;
                 }
@@ -169,14 +175,14 @@ if(exists $options{f}) {
         }
     }
 #foreach (sort keys %warn_file_indices) {
-#    print "$_ : $warn_file_indices{$_}\n";
+#    print STDERR "$_ : $warn_file_indices{$_}\n";
 #}
 }
 
 # Parse list of warning strings for files to expand warnings
 if(exists $options{S}) {
     @file_match_strings = split /,/, $options{S};
-# print @file_match_strings;
+# print STDERR @file_match_strings;
 }
 
 # Check if warnings should stay unique and not be "genericized"
@@ -197,7 +203,7 @@ while (<>) {
 
     # Retain last FORTRAN compile line, which comes a few lines before warning
     if($_ =~ /.*\.[fF]90:.*/) {
-        ($last_fort_name, $last_fort_line, $toss) = split /\:/, $_;
+        ($last_fort_name, $last_fort_line, $last_fort_offset) = split /\:/, $_;
         ($last_fort_line, $toss) = split /\./, $last_fort_line;
     }
 
@@ -217,38 +223,34 @@ while (<>) {
     # Skip warnings from linker
     next if $_ =~ /ld: warning:/;
 
-    # Skip warnings from build_py and install_lib 
+    # Skip warnings from build_py and install_lib
     next if $_ =~ /warning: (build_py|install_lib)/;
 
+    # Skip variables with the word 'warning' in them
+    next if $_ =~ /_warning_/;
+
     # "Hide" the C++ '::' symbol until we've parsed out the parts of the line
     while($_ =~ /\:\:/) {
 	$_ =~ s/\:\:/@@@@/g;
     }
 
     # Check for weird formatting of warning message
+    $line = "??";
+    $offset = "??";
     if($_ =~ /^cc1: warning:.*/) {
         $name = $last_c_name;
-        $line = "??";
         ($toss, $toss, $warning, $extra, $extra2) = split /\:/, $_;
     # Check for CMAKE build with warning on first line and no filename
     } elsif($_ =~ /^\s*[Ww]arning:.*/) {
         $name = $last_c_name;
-        $line = "??";
         ($toss, $warning, $extra, $extra2) = split /\:/, $_;
     # Check for FORTRAN warning output
     } elsif($_ =~ /^Warning:.*/) {
         $name = $last_fort_name;
         $line = $last_fort_line;
+        $offset = $last_fort_offset;
         ($toss, $warning, $extra, $extra2) = split /\:/, $_;
-#print "1:",$.,":",$_;
-#        $_ = <>;
-#print "2:",$.,":",$_;
-#        if($_ =~ /^\sFC.*/) {
-#            $_ = <>;
-#print "3:",$.,":",$_;
-#        }
-#        ($name, $line, $toss) = split /\:/, $_;
-#print "4:","'",$name,"'","-","'",$line,"'","\n";
+
         # Check for improperly parsed filename or line
         if($name =~ /^$/) {
             print "Filename is a null string! Input line #$. is: '$_'";
@@ -265,8 +267,6 @@ while (<>) {
 	    $name =~ s/^\"//g;
 	    $name =~ s/\"$//g;
 	    $line =~ s/^\s*line\s*//g;
-# print "name:'", $name, "'-'", $line, "'\n";
-# print "warning:'", $warning, "'\n";
     # Check for Intel icc warning
     } elsif($_ =~ /.*[A-Za-z0-9_]\.[chC]\(.*[0-9]\):.*#.*/) {
         ($last_c_name, $toss, $warning) = split /\:/, $last_c_name;
@@ -310,9 +310,7 @@ while (<>) {
     # Check for ignored file
     if(exists $options{i}) {
         for my $x (@ignorenames) {
-#print "x = '$x'\n";
             if($name =~ /$x/) {
-# print "matched name = '$name'\n";
                 $ignorecount++;
                 if(!(exists $ignored_files{$name})) {
                     $ignored_files{$name} = $name;
@@ -347,13 +345,22 @@ while (<>) {
 # These skipped messages & "genericizations" may be specific to GCC
 
     # Skip supplemental warning message
-    next if $warning =~ /near initialization for/;
+    if($warning =~ /near initialization for/) {
+	$notecount++;
+        next
+    }
 
     # Skip C++ supplemental warning message
-    next if $warning =~ /in call to/;
+    if($warning =~ /in call to/) {
+	$notecount++;
+        next
+    }
 
     # Skip GCC warning that should be a note
-    next if $_ =~ /\(this will be reported only once per input file\)/;
+    if($_ =~ /\(this will be reported only once per input file\)/) {
+	$notecount++;
+        next
+    }
 
     if($genericize) {
 	# Eliminate C/C++ "{aka <some type>}" and "{aka '<some type>'}" info
@@ -402,16 +409,16 @@ while (<>) {
 	    $warning =~ s/[A-Za-z_0-9]*\([A-Za-z_,0-9]*\) in [A-Za-z_0-9]*/-\(-\) in -/g;
 	}
     }
-# print "warning = $warning\n";
 # <end possible GCC-specific code>
 
     # Check if we've already seen this warning on this line in this file
     # (Can happen for warnings from inside header files)
-    if( !exists $warn_file_line{$warning}{$name}{$line} ) {
+    if( !exists $warn_file_line_offset{$warning}{$name}{$line}{$offset} ) {
 	# Increment count for [generic] warning
 	$warn_count{$warning}++;
 	$warn_file{$warning}{$name}++;
 	$warn_file_line{$warning}{$name}{$line}++;
+	$warn_file_line_offset{$warning}{$name}{$line}{$offset}++;
 
 	# Increment count for filename
 	$file_count{$name}++;
@@ -421,14 +428,20 @@ while (<>) {
 	# Increment total count of warnings
 	$totalcount++;
     }
+    else {
+	# Increment count of duplicate warnings
+	$dupcount++;
+    }
 
-#    print "name = $name\n";
-#    print "line = $line\n";
-#    print "offset = $offset\n";
-#    print "warning = \"$warning\"\n";
+#    print STDERR "name = $name\n";
+#    print STDERR "line = $line\n";
+#    print STDERR "offset = $offset\n";
+#    print STDERR "warning = \"$warning\"\n";
 }
 
 print "Total unique [non-ignored] warnings: $totalcount\n";
+print "Ignored notes / supplemental warning lines [not counted in unique warnings]: $notecount\n";
+print "Duplicated warning lines [not counted in unique warnings]: $dupcount\n";
 print "Total ignored warnings: $ignorecount\n";
 $warncount = keys %warn_count;
 print "Total unique kinds of warnings: $warncount\n";
@@ -439,7 +452,7 @@ print "Total files with warnings: $filecount\n\n";
 print "# of Warnings by frequency (file count)\n";
 print "=======================================\n";
 for my $x (sort {$warn_count{$b} <=> $warn_count{$a}} keys(%warn_count)) {
-    printf ("[%2d] %4d (%2d) - %s\n", $current_warning++, $warn_count{$x}, scalar(keys %{$warn_file_line{$x}}), $x);
+    printf ("[%2d] %4d (%2d) - %s\n", $current_warning++, $warn_count{$x}, scalar(keys %{$warn_file{$x}}), $x);
     if((exists $options{W}) || (exists $options{w}) || (exists $options{s})) {
         my $curr_index = $current_warning - 1;
 	my $match = 0;
@@ -447,9 +460,9 @@ for my $x (sort {$warn_count{$b} <=> $warn_count{$a}} keys(%warn_count)) {
 	# Check for string from list in current warning
 	if(exists $options{s}) {
 	    for my $y (@warn_match_strings) {
-# print "y = '$y'\n";
+# print STDERR "y = '$y'\n";
 		if($x =~ /$y/) {
-# print "matched warning = '$x'\n";
+# print STDERR "matched warning = '$x'\n";
 		    $match = 1;
 		    last;
 		}
@@ -477,7 +490,7 @@ for my $x (sort {$warn_count{$b} <=> $warn_count{$a}} keys(%warn_count)) {
 print "\n# of Warnings by filename (warning type)\n";
 print   "========================================\n";
 for my $x (sort {$file_count{$b} <=> $file_count{$a}} keys(%file_count)) {
-    printf ("[%3d] %4d (%2d) - %s\n", $current_file++, $file_count{$x}, scalar(keys %{$file_warn_line{$x}}), $x);
+    printf ("[%3d] %4d (%2d) - %s\n", $current_file++, $file_count{$x}, scalar(keys %{$file_warn{$x}}), $x);
     if((exists $options{F}) || (exists $options{f}) || (exists $options{S})) {
         my $curr_index = $current_file - 1;
 	my $match = 0;
@@ -485,9 +498,9 @@ for my $x (sort {$file_count{$b} <=> $file_count{$a}} keys(%file_count)) {
 	# Check for string from list in current file
 	if(exists $options{S}) {
 	    for my $y (@file_match_strings) {
-# print "y = '$y'\n";
+# print STDERR "y = '$y'\n";
 		if($x =~ /$y/) {
-# print "matched warning = '$x'\n";
+# print STDERR "matched warning = '$x'\n";
 		    $match = 1;
 		    last;
 		}

bin/yodconfigure

@@ -7,7 +7,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #

c++/COPYING

@@ -7,7 +7,7 @@
   The full HDF5 copyright notice, including terms governing use, 
   modification, and redistribution, is contained in the COPYING file
   which can be found at the root of the source code distribution tree
-  or in https://support.hdfgroup.org/ftp/HDF5/releases.  If you do
+  or in https://www.hdfgroup.org/licenses.  If you do
   not have access to either file, you may request a copy from 
   help@hdfgroup.org. 
 

c++/Makefile.am

@@ -6,7 +6,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 ##

c++/examples/CMakeTests.cmake

@@ -5,7 +5,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #

c++/examples/Makefile.am

@@ -6,7 +6,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 ##

c++/examples/chunks.cpp

@@ -6,7 +6,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
@@ -28,20 +28,20 @@ using std::endl;
 #include "H5Cpp.h"
 using namespace H5;
 
-const H5std_string FILE_NAME( "SDSextendible.h5" );
-const H5std_string DATASET_NAME( "ExtendibleArray" );
-const int      NX = 10;
-const int      NY = 5;
-const int      RANK = 2;
-const int      RANKC = 1;
+const H5std_string FILE_NAME("SDSextendible.h5");
+const H5std_string DATASET_NAME("ExtendibleArray");
+const int          NX    = 10;
+const int          NY    = 5;
+const int          RANK  = 2;
+const int          RANKC = 1;
 
-int main (void)
+int
+main(void)
 {
-    hsize_t     i, j;
+    hsize_t i, j;
 
     // Try block to detect exceptions raised by any of the calls inside it
-    try
-    {
+    try {
         /*
          * Turn off the auto-printing when failure occurs so that we can
          * handle the errors appropriately
@@ -51,8 +51,8 @@ int main (void)
         /*
          * Open the file and the dataset.
          */
-        H5File file( FILE_NAME, H5F_ACC_RDONLY );
-        DataSet dataset = file.openDataSet( DATASET_NAME );
+        H5File  file(FILE_NAME, H5F_ACC_RDONLY);
+        DataSet dataset = file.openDataSet(DATASET_NAME);
 
         /*
          * Get filespace for rank and dimension
@@ -67,10 +67,9 @@ int main (void)
         /*
          * Get and print the dimension sizes of the file dataspace
          */
-        hsize_t dims[2];        // dataset dimensions
-        rank = filespace.getSimpleExtentDims( dims );
-        cout << "dataset rank = " << rank << ", dimensions "
-             << (unsigned long)(dims[0]) << " x "
+        hsize_t dims[2]; // dataset dimensions
+        rank = filespace.getSimpleExtentDims(dims);
+        cout << "dataset rank = " << rank << ", dimensions " << (unsigned long)(dims[0]) << " x "
              << (unsigned long)(dims[1]) << endl;
 
         /*
@@ -81,13 +80,12 @@ int main (void)
         /*
          * Read dataset back and display.
          */
-        int data_out[NX][NY];  // buffer for dataset to be read
-        dataset.read( data_out, PredType::NATIVE_INT, mspace1, filespace );
+        int data_out[NX][NY]; // buffer for dataset to be read
+        dataset.read(data_out, PredType::NATIVE_INT, mspace1, filespace);
 
         cout << "\n";
         cout << "Dataset: \n";
-        for (j = 0; j < dims[0]; j++)
-        {
+        for (j = 0; j < dims[0]; j++) {
             for (i = 0; i < dims[1]; i++)
                 cout << data_out[j][i] << " ";
             cout << endl;
@@ -117,20 +115,20 @@ int main (void)
          */
         hsize_t col_dims[1];
         col_dims[0] = 10;
-        DataSpace mspace2( RANKC, col_dims );
+        DataSpace mspace2(RANKC, col_dims);
 
         /*
          * Define the column (hyperslab) to read.
          */
-        hsize_t offset[2] = { 0, 2 };
-        hsize_t  count[2] = { 10, 1 };
-        int column[10];  // buffer for column to be read
+        hsize_t offset[2] = {0, 2};
+        hsize_t count[2]  = {10, 1};
+        int     column[10]; // buffer for column to be read
 
         /*
          * Define hyperslab and read.
          */
-        filespace.selectHyperslab( H5S_SELECT_SET, count, offset );
-        dataset.read( column, PredType::NATIVE_INT, mspace2, filespace );
+        filespace.selectHyperslab(H5S_SELECT_SET, count, offset);
+        dataset.read(column, PredType::NATIVE_INT, mspace2, filespace);
 
         cout << endl;
         cout << "Third column: " << endl;
@@ -161,20 +159,18 @@ int main (void)
          */
         hsize_t chunk_dims[2];
         int     rank_chunk;
-        if( H5D_CHUNKED == cparms.getLayout() )
-        {
+        if (H5D_CHUNKED == cparms.getLayout()) {
             /*
              * Get chunking information: rank and dimensions
              */
-            rank_chunk = cparms.getChunk( 2, chunk_dims);
-            cout << "chunk rank " << rank_chunk << "dimensions "
-                << (unsigned long)(chunk_dims[0]) << " x "
-                << (unsigned long)(chunk_dims[1]) << endl;
+            rank_chunk = cparms.getChunk(2, chunk_dims);
+            cout << "chunk rank " << rank_chunk << "dimensions " << (unsigned long)(chunk_dims[0]) << " x "
+                 << (unsigned long)(chunk_dims[1]) << endl;
 
             /*
              * Define the memory space to read a chunk.
              */
-            DataSpace mspace3( rank_chunk, chunk_dims );
+            DataSpace mspace3(rank_chunk, chunk_dims);
 
             /*
              * Define chunk in the file (hyperslab) to read.
@@ -183,17 +179,16 @@ int main (void)
             offset[1] = 0;
             count[0]  = chunk_dims[0];
             count[1]  = chunk_dims[1];
-            filespace.selectHyperslab( H5S_SELECT_SET, count, offset );
+            filespace.selectHyperslab(H5S_SELECT_SET, count, offset);
 
             /*
              * Read chunk back and display.
              */
-            int chunk_out[2][5];   // buffer for chunk to be read
-            dataset.read( chunk_out, PredType::NATIVE_INT, mspace3, filespace );
+            int chunk_out[2][5]; // buffer for chunk to be read
+            dataset.read(chunk_out, PredType::NATIVE_INT, mspace3, filespace);
             cout << endl;
             cout << "Chunk:" << endl;
-            for (j = 0; j < chunk_dims[0]; j++)
-            {
+            for (j = 0; j < chunk_dims[0]; j++) {
                 for (i = 0; i < chunk_dims[1]; i++)
                     cout << chunk_out[j][i] << " ";
                 cout << endl;
@@ -204,25 +199,22 @@ int main (void)
              *   2 0 0 0 0
              */
         }
-    }  // end of try block
+    } // end of try block
 
     // catch failure caused by the H5File operations
-    catch( FileIException error )
-    {
+    catch (FileIException error) {
         error.printErrorStack();
         return -1;
     }
 
     // catch failure caused by the DataSet operations
-    catch( DataSetIException error )
-    {
+    catch (DataSetIException error) {
         error.printErrorStack();
         return -1;
     }
 
     // catch failure caused by the DataSpace operations
-    catch( DataSpaceIException error )
-    {
+    catch (DataSpaceIException error) {
         error.printErrorStack();
         return -1;
     }

c++/examples/compound.cpp

@@ -6,7 +6,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
@@ -29,175 +29,170 @@ using std::endl;
 #include "H5Cpp.h"
 using namespace H5;
 
-const H5std_string FILE_NAME( "SDScompound.h5" );
-const H5std_string DATASET_NAME( "ArrayOfStructures" );
-const H5std_string MEMBER1( "a_name" );
-const H5std_string MEMBER2( "b_name" );
-const H5std_string MEMBER3( "c_name" );
-const int   LENGTH = 10;
-const int   RANK = 1;
+const H5std_string FILE_NAME("SDScompound.h5");
+const H5std_string DATASET_NAME("ArrayOfStructures");
+const H5std_string MEMBER1("a_name");
+const H5std_string MEMBER2("b_name");
+const H5std_string MEMBER3("c_name");
+const int          LENGTH = 10;
+const int          RANK   = 1;
 
-int main(void)
+int
+main(void)
 {
-   /* First structure  and dataset*/
-   typedef struct s1_t {
+    /* First structure  and dataset*/
+    typedef struct s1_t {
         int    a;
         float  b;
         double c;
-   } s1_t;
+    } s1_t;
 
-   /* Second structure (subset of s1_t)  and dataset*/
-   typedef struct s2_t {
+    /* Second structure (subset of s1_t)  and dataset*/
+    typedef struct s2_t {
         double c;
         int    a;
-   } s2_t;
+    } s2_t;
 
-   // Try block to detect exceptions raised by any of the calls inside it
-   try
-   {
-      /*
-       * Initialize the data
-       */
-      int  i;
-      s1_t s1[LENGTH];
-      for (i = 0; i< LENGTH; i++)
-      {
-         s1[i].a = i;
-         s1[i].b = i*i;
-         s1[i].c = 1./(i+1);
-      }
+    // Try block to detect exceptions raised by any of the calls inside it
+    try {
+        /*
+         * Initialize the data
+         */
+        int  i;
+        s1_t s1[LENGTH];
+        for (i = 0; i < LENGTH; i++) {
+            s1[i].a = i;
+            s1[i].b = i * i;
+            s1[i].c = 1. / (i + 1);
+        }
 
-      /*
-       * Turn off the auto-printing when failure occurs so that we can
-       * handle the errors appropriately
-       */
-      Exception::dontPrint();
+        /*
+         * Turn off the auto-printing when failure occurs so that we can
+         * handle the errors appropriately
+         */
+        Exception::dontPrint();
 
-      /*
-       * Create the data space.
-       */
-      hsize_t dim[] = {LENGTH};   /* Dataspace dimensions */
-      DataSpace space( RANK, dim );
+        /*
+         * Create the data space.
+         */
+        hsize_t   dim[] = {LENGTH}; /* Dataspace dimensions */
+        DataSpace space(RANK, dim);
 
-      /*
-       * Create the file.
-       */
-      H5File* file = new H5File( FILE_NAME, H5F_ACC_TRUNC );
+        /*
+         * Create the file.
+         */
+        H5File *file = new H5File(FILE_NAME, H5F_ACC_TRUNC);
 
-      /*
-       * Create the memory datatype.
-       */
-      CompType mtype1( sizeof(s1_t) );
-      mtype1.insertMember( MEMBER1, HOFFSET(s1_t, a), PredType::NATIVE_INT);
-      mtype1.insertMember( MEMBER3, HOFFSET(s1_t, c), PredType::NATIVE_DOUBLE);
-      mtype1.insertMember( MEMBER2, HOFFSET(s1_t, b), PredType::NATIVE_FLOAT);
+        /*
+         * Create the memory datatype.
+         */
+        CompType mtype1(sizeof(s1_t));
+        mtype1.insertMember(MEMBER1, HOFFSET(s1_t, a), PredType::NATIVE_INT);
+        mtype1.insertMember(MEMBER3, HOFFSET(s1_t, c), PredType::NATIVE_DOUBLE);
+        mtype1.insertMember(MEMBER2, HOFFSET(s1_t, b), PredType::NATIVE_FLOAT);
 
-      /*
-       * Create the dataset.
-       */
-      DataSet* dataset;
-      dataset = new DataSet(file->createDataSet(DATASET_NAME, mtype1, space));
+        /*
+         * Create the dataset.
+         */
+        DataSet *dataset;
+        dataset = new DataSet(file->createDataSet(DATASET_NAME, mtype1, space));
 
-      /*
-       * Write data to the dataset;
-       */
-      dataset->write( s1, mtype1 );
+        /*
+         * Write data to the dataset;
+         */
+        dataset->write(s1, mtype1);
 
-      /*
-       * Release resources
-       */
-      delete dataset;
-      delete file;
+        /*
+         * Release resources
+         */
+        delete dataset;
+        delete file;
 
-      /*
-       * Open the file and the dataset.
-       */
-      file = new H5File( FILE_NAME, H5F_ACC_RDONLY );
-      dataset = new DataSet (file->openDataSet( DATASET_NAME ));
+        /*
+         * Open the file and the dataset.
+         */
+        file    = new H5File(FILE_NAME, H5F_ACC_RDONLY);
+        dataset = new DataSet(file->openDataSet(DATASET_NAME));
 
-      /*
-       * Create a datatype for s2
-       */
-      CompType mtype2( sizeof(s2_t) );
+        /*
+         * Create a datatype for s2
+         */
+        CompType mtype2(sizeof(s2_t));
 
-      mtype2.insertMember( MEMBER3, HOFFSET(s2_t, c), PredType::NATIVE_DOUBLE);
-      mtype2.insertMember( MEMBER1, HOFFSET(s2_t, a), PredType::NATIVE_INT);
+        mtype2.insertMember(MEMBER3, HOFFSET(s2_t, c), PredType::NATIVE_DOUBLE);
+        mtype2.insertMember(MEMBER1, HOFFSET(s2_t, a), PredType::NATIVE_INT);
 
-      /*
-       * Read two fields c and a from s1 dataset. Fields in the file
-       * are found by their names "c_name" and "a_name".
-       */
-      s2_t s2[LENGTH];
-      dataset->read( s2, mtype2 );
+        /*
+         * Read two fields c and a from s1 dataset. Fields in the file
+         * are found by their names "c_name" and "a_name".
+         */
+        s2_t s2[LENGTH];
+        dataset->read(s2, mtype2);
 
-      /*
-       * Display the fields
-       */
-      cout << endl << "Field c : " << endl;
-      for( i = 0; i < LENGTH; i++)
-         cout << s2[i].c << " ";
-      cout << endl;
+        /*
+         * Display the fields
+         */
+        cout << endl << "Field c : " << endl;
+        for (i = 0; i < LENGTH; i++)
+            cout << s2[i].c << " ";
+        cout << endl;
 
-      cout << endl << "Field a : " << endl;
-      for( i = 0; i < LENGTH; i++)
-         cout << s2[i].a << " ";
-      cout << endl;
+        cout << endl << "Field a : " << endl;
+        for (i = 0; i < LENGTH; i++)
+            cout << s2[i].a << " ";
+        cout << endl;
 
-      /*
-       * Create a datatype for s3.
-       */
-      CompType mtype3( sizeof(float) );
+        /*
+         * Create a datatype for s3.
+         */
+        CompType mtype3(sizeof(float));
 
-      mtype3.insertMember( MEMBER2, 0, PredType::NATIVE_FLOAT);
+        mtype3.insertMember(MEMBER2, 0, PredType::NATIVE_FLOAT);
 
-      /*
-       * Read field b from s1 dataset. Field in the file is found by its name.
-       */
-      float s3[LENGTH];  // Third "structure" - used to read float field of s1
-      dataset->read( s3, mtype3 );
+        /*
+         * Read field b from s1 dataset. Field in the file is found by its name.
+         */
+        float s3[LENGTH]; // Third "structure" - used to read float field of s1
+        dataset->read(s3, mtype3);
 
-      /*
-       * Display the field
-       */
-      cout << endl << "Field b : " << endl;
-      for( i = 0; i < LENGTH; i++)
-         cout << s3[i] << " ";
-      cout << endl;
+        /*
+         * Display the field
+         */
+        cout << endl << "Field b : " << endl;
+        for (i = 0; i < LENGTH; i++)
+            cout << s3[i] << " ";
+        cout << endl;
 
-      /*
-       * Release resources
-       */
-      delete dataset;
-      delete file;
-   }  // end of try block
+        /*
+         * Release resources
+         */
+        delete dataset;
+        delete file;
+    } // end of try block
 
-   // catch failure caused by the H5File operations
-   catch( FileIException error )
-   {
-      error.printErrorStack();
-      return -1;
-   }
+    // catch failure caused by the H5File operations
+    catch (FileIException error) {
+        error.printErrorStack();
+        return -1;
+    }
 
-   // catch failure caused by the DataSet operations
-   catch( DataSetIException error )
-   {
-      error.printErrorStack();
-      return -1;
-   }
+    // catch failure caused by the DataSet operations
+    catch (DataSetIException error) {
+        error.printErrorStack();
+        return -1;
+    }
 
-   // catch failure caused by the DataSpace operations
-   catch( DataSpaceIException error )
-   {
-      error.printErrorStack();
-      return -1;
-   }
+    // catch failure caused by the DataSpace operations
+    catch (DataSpaceIException error) {
+        error.printErrorStack();
+        return -1;
+    }
 
-   // catch failure caused by the DataSpace operations
-   catch( DataTypeIException error )
-   {
-      error.printErrorStack();
-      return -1;
-   }
+    // catch failure caused by the DataSpace operations
+    catch (DataTypeIException error) {
+        error.printErrorStack();
+        return -1;
+    }
 
-   return 0;
+    return 0;
 }

c++/examples/create.cpp

@@ -6,7 +6,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
@@ -25,105 +25,99 @@
 #include "H5Cpp.h"
 using namespace H5;
 
-const H5std_string      FILE_NAME( "SDS.h5" );
-const H5std_string      DATASET_NAME( "IntArray" );
-const int       NX = 5;                    // dataset dimensions
-const int       NY = 6;
-const int       RANK = 2;
+const H5std_string FILE_NAME("SDS.h5");
+const H5std_string DATASET_NAME("IntArray");
+const int          NX   = 5; // dataset dimensions
+const int          NY   = 6;
+const int          RANK = 2;
 
-int main (void)
+int
+main(void)
 {
-   /*
-    * Data initialization.
-    */
-   int i, j;
-   int data[NX][NY];          // buffer for data to write
-   for (j = 0; j < NX; j++)
-   {
-      for (i = 0; i < NY; i++)
-         data[j][i] = i + j;
-   }
-   /*
-    * 0 1 2 3 4 5
-    * 1 2 3 4 5 6
-    * 2 3 4 5 6 7
-    * 3 4 5 6 7 8
-    * 4 5 6 7 8 9
-    */
+    /*
+     * Data initialization.
+     */
+    int i, j;
+    int data[NX][NY]; // buffer for data to write
+    for (j = 0; j < NX; j++) {
+        for (i = 0; i < NY; i++)
+            data[j][i] = i + j;
+    }
+    /*
+     * 0 1 2 3 4 5
+     * 1 2 3 4 5 6
+     * 2 3 4 5 6 7
+     * 3 4 5 6 7 8
+     * 4 5 6 7 8 9
+     */
 
-   // Try block to detect exceptions raised by any of the calls inside it
-   try
-   {
-      /*
-       * Turn off the auto-printing when failure occurs so that we can
-       * handle the errors appropriately
-       */
-      Exception::dontPrint();
+    // Try block to detect exceptions raised by any of the calls inside it
+    try {
+        /*
+         * Turn off the auto-printing when failure occurs so that we can
+         * handle the errors appropriately
+         */
+        Exception::dontPrint();
 
-      /*
-       * Create a new file using H5F_ACC_TRUNC access,
-       * default file creation properties, and default file
-       * access properties.
-       */
-      H5File file( FILE_NAME, H5F_ACC_TRUNC );
+        /*
+         * Create a new file using H5F_ACC_TRUNC access,
+         * default file creation properties, and default file
+         * access properties.
+         */
+        H5File file(FILE_NAME, H5F_ACC_TRUNC);
 
-      /*
-       * Define the size of the array and create the data space for fixed
-       * size dataset.
-       */
-      hsize_t     dimsf[2];              // dataset dimensions
-      dimsf[0] = NX;
-      dimsf[1] = NY;
-      DataSpace dataspace( RANK, dimsf );
+        /*
+         * Define the size of the array and create the data space for fixed
+         * size dataset.
+         */
+        hsize_t dimsf[2]; // dataset dimensions
+        dimsf[0] = NX;
+        dimsf[1] = NY;
+        DataSpace dataspace(RANK, dimsf);
 
-      /*
-       * Define datatype for the data in the file.
-       * We will store little endian INT numbers.
-       */
-      IntType datatype( PredType::NATIVE_INT );
-      datatype.setOrder( H5T_ORDER_LE );
+        /*
+         * Define datatype for the data in the file.
+         * We will store little endian INT numbers.
+         */
+        IntType datatype(PredType::NATIVE_INT);
+        datatype.setOrder(H5T_ORDER_LE);
 
-      /*
-       * Create a new dataset within the file using defined dataspace and
-       * datatype and default dataset creation properties.
-       */
-      DataSet dataset = file.createDataSet( DATASET_NAME, datatype, dataspace );
+        /*
+         * Create a new dataset within the file using defined dataspace and
+         * datatype and default dataset creation properties.
+         */
+        DataSet dataset = file.createDataSet(DATASET_NAME, datatype, dataspace);
 
-      /*
-       * Write the data to the dataset using default memory space, file
-       * space, and transfer properties.
-       */
-      dataset.write( data, PredType::NATIVE_INT );
-   }  // end of try block
+        /*
+         * Write the data to the dataset using default memory space, file
+         * space, and transfer properties.
+         */
+        dataset.write(data, PredType::NATIVE_INT);
+    } // end of try block
 
-   // catch failure caused by the H5File operations
-   catch( FileIException error )
-   {
-      error.printErrorStack();
-      return -1;
-   }
+    // catch failure caused by the H5File operations
+    catch (FileIException error) {
+        error.printErrorStack();
+        return -1;
+    }
 
-   // catch failure caused by the DataSet operations
-   catch( DataSetIException error )
-   {
-      error.printErrorStack();
-      return -1;
-   }
+    // catch failure caused by the DataSet operations
+    catch (DataSetIException error) {
+        error.printErrorStack();
+        return -1;
+    }
 
-   // catch failure caused by the DataSpace operations
-   catch( DataSpaceIException error )
-   {
-      error.printErrorStack();
-      return -1;
-   }
+    // catch failure caused by the DataSpace operations
+    catch (DataSpaceIException error) {
+        error.printErrorStack();
+        return -1;
+    }
 
-   // catch failure caused by the DataSpace operations
-   catch( DataTypeIException error )
-   {
-      error.printErrorStack();
-      return -1;
-   }
+    // catch failure caused by the DataSpace operations
+    catch (DataTypeIException error) {
+        error.printErrorStack();
+        return -1;
+    }
 
-   return 0;  // successfully terminated
+    return 0; // successfully terminated
 }
-

c++/examples/extend_ds.cpp

@@ -6,7 +6,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
@@ -32,201 +32,195 @@ using std::endl;
 #include "H5Cpp.h"
 using namespace H5;
 
-const H5std_string FILE_NAME( "SDSextendible.h5" );
-const H5std_string DATASET_NAME( "ExtendibleArray" );
-const int      NX = 10;
-const int      NY = 5;
-const int      RANK = 2;
+const H5std_string FILE_NAME("SDSextendible.h5");
+const H5std_string DATASET_NAME("ExtendibleArray");
+const int          NX   = 10;
+const int          NY   = 5;
+const int          RANK = 2;
 
-int main (void)
+int
+main(void)
 {
-   /*
-    * Try block to detect exceptions raised by any of the calls inside it
-    */
-   try
-   {
-      /*
-       * Turn off the auto-printing when failure occurs so that we can
-       * handle the errors appropriately
-       */
-      Exception::dontPrint();
+    /*
+     * Try block to detect exceptions raised by any of the calls inside it
+     */
+    try {
+        /*
+         * Turn off the auto-printing when failure occurs so that we can
+         * handle the errors appropriately
+         */
+        Exception::dontPrint();
 
-      /*
-       * Create the data space with unlimited dimensions.
-       */
-      hsize_t      dims[2]  = { 3, 3};  // dataset dimensions at creation
-      hsize_t      maxdims[2] = {H5S_UNLIMITED, H5S_UNLIMITED};
-      DataSpace mspace1( RANK, dims, maxdims);
+        /*
+         * Create the data space with unlimited dimensions.
+         */
+        hsize_t   dims[2]    = {3, 3}; // dataset dimensions at creation
+        hsize_t   maxdims[2] = {H5S_UNLIMITED, H5S_UNLIMITED};
+        DataSpace mspace1(RANK, dims, maxdims);
 
-      /*
-       * Create a new file. If file exists its contents will be overwritten.
-       */
-      H5File file( FILE_NAME, H5F_ACC_TRUNC );
+        /*
+         * Create a new file. If file exists its contents will be overwritten.
+         */
+        H5File file(FILE_NAME, H5F_ACC_TRUNC);
 
-      /*
-       * Modify dataset creation properties, i.e. enable chunking.
-       */
-      DSetCreatPropList cparms;
+        /*
+         * Modify dataset creation properties, i.e. enable chunking.
+         */
+        DSetCreatPropList cparms;
 
-      hsize_t      chunk_dims[2] ={2, 5};
-      cparms.setChunk( RANK, chunk_dims );
+        hsize_t chunk_dims[2] = {2, 5};
+        cparms.setChunk(RANK, chunk_dims);
 
-      /*
-       * Set fill value for the dataset
-       */
-      int fill_val = 0;
-      cparms.setFillValue( PredType::NATIVE_INT, &fill_val);
+        /*
+         * Set fill value for the dataset
+         */
+        int fill_val = 0;
+        cparms.setFillValue(PredType::NATIVE_INT, &fill_val);
 
-      /*
-       * Create a new dataset within the file using cparms
-       * creation properties.
-       */
-      DataSet dataset = file.createDataSet( DATASET_NAME, PredType::NATIVE_INT, mspace1, cparms);
+        /*
+         * Create a new dataset within the file using cparms
+         * creation properties.
+         */
+        DataSet dataset = file.createDataSet(DATASET_NAME, PredType::NATIVE_INT, mspace1, cparms);
 
-      /*
-       * Extend the dataset. This call assures that dataset is at least 3 x 3.
-       */
-      hsize_t      size[2];
-      size[0]   = 3;
-      size[1]   = 3;
-      dataset.extend( size );
+        /*
+         * Extend the dataset. This call assures that dataset is at least 3 x 3.
+         */
+        hsize_t size[2];
+        size[0] = 3;
+        size[1] = 3;
+        dataset.extend(size);
 
-      /*
-       * Select a hyperslab.
-       */
-      DataSpace fspace1 = dataset.getSpace ();
-      hsize_t     offset[2];
-      offset[0] = 0;
-      offset[1] = 0;
-      hsize_t      dims1[2] = { 3, 3};            /* data1 dimensions */
-      fspace1.selectHyperslab( H5S_SELECT_SET, dims1, offset );
+        /*
+         * Select a hyperslab.
+         */
+        DataSpace fspace1 = dataset.getSpace();
+        hsize_t   offset[2];
+        offset[0]        = 0;
+        offset[1]        = 0;
+        hsize_t dims1[2] = {3, 3}; /* data1 dimensions */
+        fspace1.selectHyperslab(H5S_SELECT_SET, dims1, offset);
 
-      /*
-       * Write the data to the hyperslab.
-       */
-      int       data1[3][3] = { {1, 1, 1},       /* data to write */
-                                {1, 1, 1},
-                                {1, 1, 1} };
-      dataset.write( data1, PredType::NATIVE_INT, mspace1, fspace1 );
+        /*
+         * Write the data to the hyperslab.
+         */
+        int data1[3][3] = {{1, 1, 1}, /* data to write */
+                           {1, 1, 1},
+                           {1, 1, 1}};
+        dataset.write(data1, PredType::NATIVE_INT, mspace1, fspace1);
 
-      /*
-       * Extend the dataset. Dataset becomes 10 x 3.
-       */
-      hsize_t   dims2[2] = { 7, 1};            /* data2 dimensions */
-      dims[0]   = dims1[0] + dims2[0];
-      size[0]   = dims[0];
-      size[1]   = dims[1];
-      dataset.extend( size );
+        /*
+         * Extend the dataset. Dataset becomes 10 x 3.
+         */
+        hsize_t dims2[2] = {7, 1}; /* data2 dimensions */
+        dims[0]          = dims1[0] + dims2[0];
+        size[0]          = dims[0];
+        size[1]          = dims[1];
+        dataset.extend(size);
 
-      /*
-       * Select a hyperslab.
-       */
-      DataSpace fspace2 = dataset.getSpace ();
-      offset[0] = 3;
-      offset[1] = 0;
-      fspace2.selectHyperslab( H5S_SELECT_SET, dims2, offset );
+        /*
+         * Select a hyperslab.
+         */
+        DataSpace fspace2 = dataset.getSpace();
+        offset[0]         = 3;
+        offset[1]         = 0;
+        fspace2.selectHyperslab(H5S_SELECT_SET, dims2, offset);
 
-      /*
-       * Define memory space
-       */
-      DataSpace mspace2( RANK, dims2 );
+        /*
+         * Define memory space
+         */
+        DataSpace mspace2(RANK, dims2);
 
-      /*
-       * Write the data to the hyperslab.
-       */
-      int  data2[7]    = { 2, 2, 2, 2, 2, 2, 2};
-      dataset.write( data2, PredType::NATIVE_INT, mspace2, fspace2 );
+        /*
+         * Write the data to the hyperslab.
+         */
+        int data2[7] = {2, 2, 2, 2, 2, 2, 2};
+        dataset.write(data2, PredType::NATIVE_INT, mspace2, fspace2);
 
-      /*
-       * Extend the dataset. Dataset becomes 10 x 5.
-       */
-      hsize_t   dims3[2] = { 2, 2};            /* data3 dimensions */
-      dims[1]   = dims1[1] + dims3[1];
-      size[0]   = dims[0];
-      size[1]   = dims[1];
-      dataset.extend( size );
+        /*
+         * Extend the dataset. Dataset becomes 10 x 5.
+         */
+        hsize_t dims3[2] = {2, 2}; /* data3 dimensions */
+        dims[1]          = dims1[1] + dims3[1];
+        size[0]          = dims[0];
+        size[1]          = dims[1];
+        dataset.extend(size);
 
-      /*
-       * Select a hyperslab
-       */
-      DataSpace fspace3 = dataset.getSpace ();
-      offset[0] = 0;
-      offset[1] = 3;
-      fspace3.selectHyperslab( H5S_SELECT_SET, dims3, offset );
+        /*
+         * Select a hyperslab
+         */
+        DataSpace fspace3 = dataset.getSpace();
+        offset[0]         = 0;
+        offset[1]         = 3;
+        fspace3.selectHyperslab(H5S_SELECT_SET, dims3, offset);
 
-      /*
-       * Define memory space.
-       */
-      DataSpace mspace3( RANK, dims3 );
+        /*
+         * Define memory space.
+         */
+        DataSpace mspace3(RANK, dims3);
 
-      /*
-       * Write the data to the hyperslab.
-       */
-      int         data3[2][2] = { {3, 3}, {3, 3} };
-      dataset.write( data3, PredType::NATIVE_INT, mspace3, fspace3 );
+        /*
+         * Write the data to the hyperslab.
+         */
+        int data3[2][2] = {{3, 3}, {3, 3}};
+        dataset.write(data3, PredType::NATIVE_INT, mspace3, fspace3);
 
-      /*
-       * Read the data from this dataset and display it.
-       */
-      int i, j;
-      int data_out[NX][NY];
-      for (i = 0; i < NX; i++)
-      {
-         for (j = 0; j < NY; j++)
-            data_out[i][j] = 0;
-      }
-      dataset.read( data_out, PredType::NATIVE_INT );
-      /*
-       * Resulting dataset
-       *
-       *         1 1 1 3 3
-       *         1 1 1 3 3
-       *         1 1 1 0 0
-       *         2 0 0 0 0
-       *         2 0 0 0 0
-       *         2 0 0 0 0
-       *         2 0 0 0 0
-       *         2 0 0 0 0
-       *         2 0 0 0 0
-       *         2 0 0 0 0
-       */
-      /*
-       * Display the result.
-       */
-      for (i=0; i < NX; i++)
-      {
-          for(j=0; j < NY; j++)
-             cout << data_out[i][j] << "  ";
-          cout << endl;
-      }
-   }  // end of try block
+        /*
+         * Read the data from this dataset and display it.
+         */
+        int i, j;
+        int data_out[NX][NY];
+        for (i = 0; i < NX; i++) {
+            for (j = 0; j < NY; j++)
+                data_out[i][j] = 0;
+        }
+        dataset.read(data_out, PredType::NATIVE_INT);
+        /*
+         * Resulting dataset
+         *
+         *         1 1 1 3 3
+         *         1 1 1 3 3
+         *         1 1 1 0 0
+         *         2 0 0 0 0
+         *         2 0 0 0 0
+         *         2 0 0 0 0
+         *         2 0 0 0 0
+         *         2 0 0 0 0
+         *         2 0 0 0 0
+         *         2 0 0 0 0
+         */
+        /*
+         * Display the result.
+         */
+        for (i = 0; i < NX; i++) {
+            for (j = 0; j < NY; j++)
+                cout << data_out[i][j] << "  ";
+            cout << endl;
+        }
+    } // end of try block
 
-   // catch failure caused by the H5File operations
-   catch( FileIException error )
-   {
-      error.printErrorStack();
-      return -1;
-   }
+    // catch failure caused by the H5File operations
+    catch (FileIException error) {
+        error.printErrorStack();
+        return -1;
+    }
 
-   // catch failure caused by the DataSet operations
-   catch( DataSetIException error )
-   {
-      error.printErrorStack();
-      return -1;
-   }
+    // catch failure caused by the DataSet operations
+    catch (DataSetIException error) {
+        error.printErrorStack();
+        return -1;
+    }
 
-   // catch failure caused by the DataSpace operations
-   catch( DataSpaceIException error )
-   {
-      error.printErrorStack();
-      return -1;
-   }
+    // catch failure caused by the DataSpace operations
+    catch (DataSpaceIException error) {
+        error.printErrorStack();
+        return -1;
+    }
 
-   // catch failure caused by the DataSpace operations
-   catch( DataTypeIException error )
-   {
-      error.printErrorStack();
-      return -1;
-   }
-   return 0;
+    // catch failure caused by the DataSpace operations
+    catch (DataTypeIException error) {
+        error.printErrorStack();
+        return -1;
+    }
+    return 0;
 }

c++/examples/h5group.cpp

@@ -6,7 +6,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
@@ -32,22 +32,21 @@ using std::endl;
 #include "H5Cpp.h"
 using namespace H5;
 
-const H5std_string FILE_NAME( "Group.h5" );
+const H5std_string FILE_NAME("Group.h5");
 const int          RANK = 2;
 
 // Operator function
-extern "C" herr_t file_info(hid_t loc_id, const char *name, const H5L_info2_t *linfo,
-    void *opdata);
+extern "C" herr_t file_info(hid_t loc_id, const char *name, const H5L_info2_t *linfo, void *opdata);
 
-int main(void)
+int
+main(void)
 {
 
-    hsize_t  dims[2];
-    hsize_t  cdims[2];
+    hsize_t dims[2];
+    hsize_t cdims[2];
 
     // Try block to detect exceptions raised by any of the calls inside it
-    try
-    {
+    try {
         /*
          * Turn off the auto-printing when failure occurs so that we can
          * handle the errors appropriately
@@ -58,12 +57,12 @@ int main(void)
          * Create the named file, truncating the existing one if any,
          * using default create and access property lists.
          */
-        H5File *file = new H5File( FILE_NAME, H5F_ACC_TRUNC );
+        H5File *file = new H5File(FILE_NAME, H5F_ACC_TRUNC);
 
         /*
          * Create a group in the file
          */
-        Group* group = new Group( file->createGroup( "/Data" ));
+        Group *group = new Group(file->createGroup("/Data"));
 
         /*
          * Create dataset "Compressed Data" in the group using absolute
@@ -71,21 +70,20 @@ int main(void)
          * GZIP compression with the compression effort set to 6.
          * Note that compression can be used only when dataset is chunked.
          */
-        dims[0] = 1000;
-        dims[1] = 20;
-        cdims[0] = 20;
-        cdims[1] = 20;
-        DataSpace *dataspace = new DataSpace(RANK, dims); // create new dspace
-        DSetCreatPropList ds_creatplist;  // create dataset creation prop list
-        ds_creatplist.setChunk( 2, cdims );  // then modify it for compression
-        ds_creatplist.setDeflate( 6 );
+        dims[0]                     = 1000;
+        dims[1]                     = 20;
+        cdims[0]                    = 20;
+        cdims[1]                    = 20;
+        DataSpace *       dataspace = new DataSpace(RANK, dims); // create new dspace
+        DSetCreatPropList ds_creatplist;                         // create dataset creation prop list
+        ds_creatplist.setChunk(2, cdims);                        // then modify it for compression
+        ds_creatplist.setDeflate(6);
 
         /*
          * Create the first dataset.
          */
-        DataSet* dataset = new DataSet(file->createDataSet(
-                "/Data/Compressed_Data", PredType::NATIVE_INT,
-                *dataspace, ds_creatplist ));
+        DataSet *dataset = new DataSet(
+            file->createDataSet("/Data/Compressed_Data", PredType::NATIVE_INT, *dataspace, ds_creatplist));
 
         /*
          * Close the first dataset.
@@ -96,11 +94,10 @@ int main(void)
         /*
          * Create the second dataset.
          */
-        dims[0] = 500;
-        dims[1] = 20;
+        dims[0]   = 500;
+        dims[1]   = 20;
         dataspace = new DataSpace(RANK, dims); // create second dspace
-        dataset = new DataSet(file->createDataSet("/Data/Float_Data",
-                        PredType::NATIVE_FLOAT, *dataspace));
+        dataset   = new DataSet(file->createDataSet("/Data/Float_Data", PredType::NATIVE_FLOAT, *dataspace));
 
         delete dataset;
         delete dataspace;
@@ -110,16 +107,16 @@ int main(void)
         /*
          * Now reopen the file and group in the file.
          */
-        file = new H5File(FILE_NAME, H5F_ACC_RDWR);
+        file  = new H5File(FILE_NAME, H5F_ACC_RDWR);
         group = new Group(file->openGroup("Data"));
 
         /*
          * Access "Compressed_Data" dataset in the group.
          */
-        try {  // to determine if the dataset exists in the group
-            dataset = new DataSet( group->openDataSet( "Compressed_Data" ));
+        try { // to determine if the dataset exists in the group
+            dataset = new DataSet(group->openDataSet("Compressed_Data"));
         }
-        catch( GroupIException not_found_error ) {
+        catch (GroupIException not_found_error) {
             cout << " Dataset is not found." << endl;
         }
         cout << "dataset \"/Data/Compressed_Data\" is open" << endl;
@@ -132,17 +129,16 @@ int main(void)
         /*
          * Create hard link to the Data group.
          */
-        file->link( H5L_TYPE_HARD, "Data", "Data_new" );
+        file->link(H5L_TYPE_HARD, "Data", "Data_new");
 
         /*
          * We can access "Compressed_Data" dataset using created
          * hard link "Data_new".
          */
-        try {  // to determine if the dataset exists in the file
-            dataset = new DataSet(file->openDataSet( "/Data_new/Compressed_Data" ));
+        try { // to determine if the dataset exists in the file
+            dataset = new DataSet(file->openDataSet("/Data_new/Compressed_Data"));
         }
-        catch( FileIException not_found_error )
-        {
+        catch (FileIException not_found_error) {
             cout << " Dataset is not found." << endl;
         }
         cout << "dataset \"/Data_new/Compressed_Data\" is open" << endl;
@@ -165,11 +161,10 @@ int main(void)
          * of the objects in the file root direvtory.
          */
         cout << "Unlinking..." << endl;
-        try {  // attempt to unlink the dataset
-            file->unlink( "Data" );
+        try { // attempt to unlink the dataset
+            file->unlink("Data");
         }
-        catch( FileIException unlink_error )
-        {
+        catch (FileIException unlink_error) {
             cout << " unlink failed." << endl;
         }
         cout << "\"Data\" is unlinked" << endl;
@@ -183,32 +178,28 @@ int main(void)
          */
         delete group;
         delete file;
-    }  // end of try block
+    } // end of try block
 
     // catch failure caused by the H5File operations
-    catch( FileIException error )
-    {
+    catch (FileIException error) {
         error.printErrorStack();
         return -1;
     }
 
     // catch failure caused by the DataSet operations
-    catch( DataSetIException error )
-    {
+    catch (DataSetIException error) {
         error.printErrorStack();
         return -1;
     }
 
     // catch failure caused by the DataSpace operations
-    catch( DataSpaceIException error )
-    {
+    catch (DataSpaceIException error) {
         error.printErrorStack();
         return -1;
     }
 
     // catch failure caused by the Attribute operations
-    catch( AttributeIException error )
-    {
+    catch (AttributeIException error) {
         error.printErrorStack();
         return -1;
     }
@@ -236,4 +227,3 @@ file_info(hid_t loc_id, const char *name, const H5L_info2_t *linfo, void *opdata
     H5Gclose(group);
     return 0;
 }
-

c++/examples/h5tutr_cmprss.cpp

@@ -6,7 +6,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
@@ -24,20 +24,20 @@ using std::endl;
 #include "H5Cpp.h"
 using namespace H5;
 
-const H5std_string      FILE_NAME("h5tutr_cmprss.h5");
-const H5std_string      DATASET_NAME("Compressed_Data");
-const int       DIM0 = 100;
-const int       DIM1 = 20;
+const H5std_string FILE_NAME("h5tutr_cmprss.h5");
+const H5std_string DATASET_NAME("Compressed_Data");
+const int          DIM0 = 100;
+const int          DIM1 = 20;
 
-int main (void)
+int
+main(void)
 {
-    hsize_t dims[2] = { DIM0, DIM1 };   // dataset dimensions
-    hsize_t chunk_dims[2] = { 20, 20 }; // chunk dimensions
-    int     i,j, buf[DIM0][DIM1];
+    hsize_t dims[2]       = {DIM0, DIM1}; // dataset dimensions
+    hsize_t chunk_dims[2] = {20, 20};     // chunk dimensions
+    int     i, j, buf[DIM0][DIM1];
 
     // Try block to detect exceptions raised by any of the calls inside it
-    try
-    {
+    try {
         // Turn off the auto-printing when failure occurs so that we can
         // handle the errors appropriately
         Exception::dontPrint();
@@ -49,7 +49,7 @@ int main (void)
         DataSpace *dataspace = new DataSpace(2, dims);
 
         // Modify dataset creation property to enable chunking
-        DSetCreatPropList  *plist = new  DSetCreatPropList;
+        DSetCreatPropList *plist = new DSetCreatPropList;
         plist->setChunk(2, chunk_dims);
 
         // Set ZLIB (DEFLATE) Compression using level 6.
@@ -62,12 +62,12 @@ int main (void)
         // plist->setSzip(szip_options_mask, szip_pixels_per_block);
 
         // Create the dataset.
-        DataSet *dataset = new DataSet(file.createDataSet( DATASET_NAME,
-                                PredType::STD_I32BE, *dataspace, *plist) );
+        DataSet *dataset =
+            new DataSet(file.createDataSet(DATASET_NAME, PredType::STD_I32BE, *dataspace, *plist));
 
-        for (i = 0; i< DIM0; i++)
-          for (j=0; j<DIM1; j++)
-              buf[i][j] = i+j;
+        for (i = 0; i < DIM0; i++)
+            for (j = 0; j < DIM1; j++)
+                buf[i][j] = i + j;
 
         // Write data to dataset.
         dataset->write(buf, PredType::NATIVE_INT);
@@ -83,41 +83,41 @@ int main (void)
         // information for dataset and read the data back.
         // -----------------------------------------------
 
-        int        rbuf[DIM0][DIM1];
-        int        numfilt;
-        size_t     nelmts={1}, namelen={1};
-        unsigned  flags, filter_info, cd_values[1], idx;
-        char       name[1];
+        int          rbuf[DIM0][DIM1];
+        int          numfilt;
+        size_t       nelmts = {1}, namelen = {1};
+        unsigned     flags, filter_info, cd_values[1], idx;
+        char         name[1];
         H5Z_filter_t filter_type;
 
         // Open the file and the dataset in the file.
         file.openFile(FILE_NAME, H5F_ACC_RDONLY);
-        dataset = new DataSet(file.openDataSet( DATASET_NAME));
+        dataset = new DataSet(file.openDataSet(DATASET_NAME));
 
         // Get the create property list of the dataset.
-        plist = new DSetCreatPropList(dataset->getCreatePlist ());
+        plist = new DSetCreatPropList(dataset->getCreatePlist());
 
         // Get the number of filters associated with the dataset.
         numfilt = plist->getNfilters();
         cout << "Number of filters associated with dataset: " << numfilt << endl;
 
-        for (idx=0; idx < numfilt; idx++) {
+        for (idx = 0; idx < numfilt; idx++) {
             nelmts = 0;
 
-            filter_type = plist->getFilter(idx, flags, nelmts, cd_values, namelen, name , filter_info);
+            filter_type = plist->getFilter(idx, flags, nelmts, cd_values, namelen, name, filter_info);
 
             cout << "Filter Type: ";
 
             switch (filter_type) {
-              case H5Z_FILTER_DEFLATE:
-                   cout << "H5Z_FILTER_DEFLATE" << endl;
-                   break;
-              case H5Z_FILTER_SZIP:
-                   cout << "H5Z_FILTER_SZIP" << endl;
-                   break;
-              default:
-                   cout << "Other filter type included." << endl;
-              }
+                case H5Z_FILTER_DEFLATE:
+                    cout << "H5Z_FILTER_DEFLATE" << endl;
+                    break;
+                case H5Z_FILTER_SZIP:
+                    cout << "H5Z_FILTER_SZIP" << endl;
+                    break;
+                default:
+                    cout << "Other filter type included." << endl;
+            }
         }
 
         // Read data.
@@ -125,31 +125,27 @@ int main (void)
 
         delete plist;
         delete dataset;
-        file.close();   // can be skipped
+        file.close(); // can be skipped
 
-    }  // end of try block
+    } // end of try block
 
     // catch failure caused by the H5File operations
-    catch(FileIException error)
-    {
+    catch (FileIException error) {
         error.printErrorStack();
         return -1;
     }
 
     // catch failure caused by the DataSet operations
-    catch(DataSetIException error)
-    {
+    catch (DataSetIException error) {
         error.printErrorStack();
         return -1;
     }
 
     // catch failure caused by the DataSpace operations
-    catch(DataSpaceIException error)
-    {
+    catch (DataSpaceIException error) {
         error.printErrorStack();
         return -1;
     }
 
-    return 0;  // successfully terminated
+    return 0; // successfully terminated
 }
-

c++/examples/h5tutr_crtatt.cpp

@@ -6,7 +6,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
@@ -21,69 +21,62 @@
 #include "H5Cpp.h"
 using namespace H5;
 
-const H5std_string      FILE_NAME( "h5tutr_dset.h5" );
-const H5std_string      DATASET_NAME( "dset" );
-const H5std_string      ATTR_NAME( "Units" );
+const H5std_string FILE_NAME("h5tutr_dset.h5");
+const H5std_string DATASET_NAME("dset");
+const H5std_string ATTR_NAME("Units");
 
-const int       DIM1 = 2;
+const int DIM1 = 2;
 
-int main (void)
+int
+main(void)
 {
-   int attr_data[2] = { 100, 200};
-   hsize_t dims[1] = { DIM1 };
+    int     attr_data[2] = {100, 200};
+    hsize_t dims[1]      = {DIM1};
 
-
-   // Try block to detect exceptions raised by any of the calls inside it
-   try
-   {
+    // Try block to detect exceptions raised by any of the calls inside it
+    try {
         // Turn off the auto-printing when failure occurs so that we can
         // handle the errors appropriately
         Exception::dontPrint();
 
         // Open an existing file and dataset.
-        H5File file( FILE_NAME, H5F_ACC_RDWR );
-        DataSet dataset = file.openDataSet( DATASET_NAME );
+        H5File  file(FILE_NAME, H5F_ACC_RDWR);
+        DataSet dataset = file.openDataSet(DATASET_NAME);
 
         // Create the data space for the attribute.
-        DataSpace attr_dataspace = DataSpace (1, dims );
+        DataSpace attr_dataspace = DataSpace(1, dims);
 
         // Create a dataset attribute.
-        Attribute attribute = dataset.createAttribute( ATTR_NAME, PredType::STD_I32BE,
-                                                  attr_dataspace);
+        Attribute attribute = dataset.createAttribute(ATTR_NAME, PredType::STD_I32BE, attr_dataspace);
 
         // Write the attribute data.
-        attribute.write( PredType::NATIVE_INT, attr_data);
+        attribute.write(PredType::NATIVE_INT, attr_data);
 
-   }  // end of try block
+    } // end of try block
 
-   // catch failure caused by the H5File operations
-   catch( DataSpaceIException error )
-   {
+    // catch failure caused by the H5File operations
+    catch (DataSpaceIException error) {
         error.printErrorStack();
         return -1;
-   }
+    }
 
-   // catch failure caused by the H5File operations
-   catch( AttributeIException error )
-   {
+    // catch failure caused by the H5File operations
+    catch (AttributeIException error) {
         error.printErrorStack();
         return -1;
-   }
+    }
 
-   // catch failure caused by the H5File operations
-   catch( FileIException error )
-   {
+    // catch failure caused by the H5File operations
+    catch (FileIException error) {
         error.printErrorStack();
         return -1;
-   }
+    }
 
-   // catch failure caused by the DataSet operations
-   catch( DataSetIException error )
-   {
+    // catch failure caused by the DataSet operations
+    catch (DataSetIException error) {
         error.printErrorStack();
         return -1;
-   }
+    }
 
-   return 0;  // successfully terminated
+    return 0; // successfully terminated
 }
-

c++/examples/h5tutr_crtdat.cpp

@@ -6,7 +6,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
@@ -22,17 +22,17 @@
 #include "H5Cpp.h"
 using namespace H5;
 
-const H5std_string      FILE_NAME("h5tutr_dset.h5");
-const H5std_string      DATASET_NAME("dset");
-const int        NX = 4;                     // dataset dimensions
-const int        NY = 6;
-const int        RANK = 2;
+const H5std_string FILE_NAME("h5tutr_dset.h5");
+const H5std_string DATASET_NAME("dset");
+const int          NX   = 4; // dataset dimensions
+const int          NY   = 6;
+const int          RANK = 2;
 
-int main (void)
+int
+main(void)
 {
     // Try block to detect exceptions raised by any of the calls inside it
-    try
-    {
+    try {
         // Turn off the auto-printing when failure occurs so that we can
         // handle the errors appropriately
         Exception::dontPrint();
@@ -41,7 +41,7 @@ int main (void)
         H5File file(FILE_NAME, H5F_ACC_TRUNC);
 
         // Create the data space for the dataset.
-        hsize_t dims[2];               // dataset dimensions
+        hsize_t dims[2]; // dataset dimensions
         dims[0] = NX;
         dims[1] = NY;
         DataSpace dataspace(RANK, dims);
@@ -49,29 +49,25 @@ int main (void)
         // Create the dataset.
         DataSet dataset = file.createDataSet(DATASET_NAME, PredType::STD_I32BE, dataspace);
 
-    }  // end of try block
+    } // end of try block
 
     // catch failure caused by the H5File operations
-    catch(FileIException error)
-    {
+    catch (FileIException error) {
         error.printErrorStack();
         return -1;
     }
 
     // catch failure caused by the DataSet operations
-    catch(DataSetIException error)
-    {
+    catch (DataSetIException error) {
         error.printErrorStack();
         return -1;
     }
 
     // catch failure caused by the DataSpace operations
-    catch(DataSpaceIException error)
-    {
+    catch (DataSpaceIException error) {
         error.printErrorStack();
         return -1;
     }
 
-    return 0;  // successfully terminated
+    return 0; // successfully terminated
 }
-

c++/examples/h5tutr_crtgrp.cpp

@@ -6,7 +6,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
@@ -26,11 +26,11 @@ using namespace H5;
 
 const H5std_string FILE_NAME("h5tutr_group.h5");
 
-int main(void)
+int
+main(void)
 {
     // Try block to detect exceptions raised by any of the calls inside it
-    try
-    {
+    try {
         // Turn off the auto-printing when failure occurs so that we can
         // handle the errors appropriately
         Exception::dontPrint();
@@ -46,14 +46,12 @@ int main(void)
     } // end of try block
 
     // catch failure caused by the H5File operations
-    catch(FileIException error)
-    {
+    catch (FileIException error) {
         error.printErrorStack();
         return -1;
     }
     // catch failure caused by the Group operations
-    catch(GroupIException error)
-    {
+    catch (GroupIException error) {
         error.printErrorStack();
         return -1;
     }

c++/examples/h5tutr_crtgrpar.cpp

@@ -6,7 +6,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
@@ -26,12 +26,12 @@ using namespace H5;
 
 const H5std_string FILE_NAME("h5tutr_groups.h5");
 
-int main(void)
+int
+main(void)
 {
 
     // Try block to detect exceptions raised by any of the calls inside it
-    try
-    {
+    try {
 
         // Turn off the auto-printing when failure occurs so that we can
         // handle the errors appropriately.
@@ -44,7 +44,7 @@ int main(void)
 
         // Create group "MyGroup" in the root group using an absolute name.
 
-        Group group1(file.createGroup( "/MyGroup"));
+        Group group1(file.createGroup("/MyGroup"));
 
         // Create group "Group_A" in group "MyGroup" using an
         // absolute name.
@@ -54,7 +54,7 @@ int main(void)
         // Create group "Group_B" in group "MyGroup" using a
         // relative name.
 
-        Group group3(group1.createGroup ("Group_B"));
+        Group group3(group1.createGroup("Group_B"));
 
         // Close the groups and file.
 
@@ -66,20 +66,16 @@ int main(void)
     } // end of try block
 
     // catch failure caused by the File operations
-    catch(FileIException error)
-    {
+    catch (FileIException error) {
         error.printErrorStack();
         return -1;
     }
 
     // catch failure caused by the Group operations
-    catch(GroupIException error)
-    {
+    catch (GroupIException error) {
         error.printErrorStack();
         return -1;
     }
 
     return 0;
 }
-
-

c++/examples/h5tutr_crtgrpd.cpp

@@ -6,7 +6,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
@@ -27,20 +27,20 @@ using namespace H5;
 const H5std_string FILE_NAME("h5tutr_groups.h5");
 const H5std_string DATASET_NAME1("/MyGroup/dset1");
 const H5std_string DATASET_NAME2("dset2");
-const int       RANK = 2;
-const int       D1DIM1 = 3;
-const int       D1DIM2 = 3;
-const int       D2DIM1 = 2;
-const int       D2DIM2 = 10;
+const int          RANK   = 2;
+const int          D1DIM1 = 3;
+const int          D1DIM2 = 3;
+const int          D2DIM1 = 2;
+const int          D2DIM2 = 10;
 
-int main(void)
+int
+main(void)
 {
     int dset1_data[D1DIM1][D1DIM2], dset2_data[D2DIM1][D2DIM2]; // data buffers
     int i, j;
 
     // Try block to catch exceptions raised by any of the calls inside it
-    try
-    {
+    try {
         // Turn off the auto-printing when failure occurs so that we can
         // handle the errors appropriately
         Exception::dontPrint();
@@ -48,12 +48,12 @@ int main(void)
         // Initialize the first dataset.
         for (i = 0; i < D1DIM1; i++)
             for (j = 0; j < D1DIM2; j++)
-               dset1_data[i][j] = j + 1;
+                dset1_data[i][j] = j + 1;
 
         //  Initialize the second dataset.
         for (i = 0; i < D2DIM1; i++)
-          for (j = 0; j < D2DIM2; j++)
-              dset2_data[i][j] = j + 1;
+            for (j = 0; j < D2DIM2; j++)
+                dset2_data[i][j] = j + 1;
 
         // Open an existing file and dataset.
         H5File file(FILE_NAME, H5F_ACC_RDWR);
@@ -62,15 +62,14 @@ int main(void)
         // pointer for the instance 'dataspace'.  It can be deleted and
         // used again later for another data space.  An HDF5 identifier is
         // closed by the destructor or the method 'close()'.
-        hsize_t dims[RANK];               // dataset dimensions
-        dims[0] = D1DIM1;
-        dims[1] = D1DIM2;
-        DataSpace *dataspace = new DataSpace (RANK, dims);
+        hsize_t dims[RANK]; // dataset dimensions
+        dims[0]              = D1DIM1;
+        dims[1]              = D1DIM2;
+        DataSpace *dataspace = new DataSpace(RANK, dims);
 
         // Create the dataset in group "MyGroup".  Same note as for the
         // dataspace above.
-        DataSet *dataset = new DataSet (file.createDataSet(DATASET_NAME1,
-                                         PredType::STD_I32BE, *dataspace));
+        DataSet *dataset = new DataSet(file.createDataSet(DATASET_NAME1, PredType::STD_I32BE, *dataspace));
 
         // Write the data to the dataset using default memory space, file
         // space, and transfer properties.
@@ -81,16 +80,15 @@ int main(void)
         delete dataspace;
 
         // Create the data space for the second dataset.
-        dims[0] = D2DIM1;
-        dims[1] = D2DIM2;
-        dataspace = new DataSpace (RANK, dims);
+        dims[0]   = D2DIM1;
+        dims[1]   = D2DIM2;
+        dataspace = new DataSpace(RANK, dims);
 
         // Create group "Group_A" in group "MyGroup".
         Group group(file.openGroup("/MyGroup/Group_A"));
 
         // Create the second dataset in group "Group_A".
-        dataset = new DataSet (group.createDataSet(DATASET_NAME2,
-                                         PredType::STD_I32BE, *dataspace));
+        dataset = new DataSet(group.createDataSet(DATASET_NAME2, PredType::STD_I32BE, *dataspace));
 
         // Write the data to the dataset using default memory space, file
         // space, and transfer properties.
@@ -104,31 +102,27 @@ int main(void)
     } // end of try block
 
     // catch failure caused by the H5File operations
-    catch(FileIException error)
-    {
-         error.printErrorStack();
-         return -1;
+    catch (FileIException error) {
+        error.printErrorStack();
+        return -1;
     }
     // catch failure caused by the DataSet operations
-    catch(DataSetIException error)
-    {
-         error.printErrorStack();
-         return -1;
+    catch (DataSetIException error) {
+        error.printErrorStack();
+        return -1;
     }
 
     // catch failure caused by the DataSpace operations
-    catch(DataSpaceIException error)
-    {
+    catch (DataSpaceIException error) {
         error.printErrorStack();
         return -1;
     }
 
     // catch failure caused by the Group operations
-    catch(GroupIException error)
-    {
+    catch (GroupIException error) {
         error.printErrorStack();
         return -1;
     }
 
-     return 0;
+    return 0;
 }

c++/examples/h5tutr_extend.cpp

@@ -6,7 +6,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
@@ -24,34 +24,28 @@ using std::endl;
 #include "H5Cpp.h"
 using namespace H5;
 
-const H5std_string      FILE_NAME("h5tutr_extend.h5");
-const H5std_string      DATASETNAME("ExtendibleArray");
+const H5std_string FILE_NAME("h5tutr_extend.h5");
+const H5std_string DATASETNAME("ExtendibleArray");
 
-int main (void)
+int
+main(void)
 {
-     hsize_t dims[2] = {3,3};           // dataset dimensions at creation
-     hsize_t maxdims[2] = {H5S_UNLIMITED, H5S_UNLIMITED};
-     hsize_t chunk_dims[2] ={2, 5};
-     int           data[3][3] = { {1, 1, 1},    // data to write
-                                  {1, 1, 1},
-                                  {1, 1, 1} };
+    hsize_t dims[2]       = {3, 3}; // dataset dimensions at creation
+    hsize_t maxdims[2]    = {H5S_UNLIMITED, H5S_UNLIMITED};
+    hsize_t chunk_dims[2] = {2, 5};
+    int     data[3][3]    = {{1, 1, 1}, // data to write
+                      {1, 1, 1},
+                      {1, 1, 1}};
 
-     // Variables used in extending and writing to the extended portion of dataset
+    // Variables used in extending and writing to the extended portion of dataset
 
-     hsize_t size[2];
-     hsize_t offset[2];
-     hsize_t dimsext[2] = {7, 3};         // extend dimensions
-     int     dataext[7][3] = { {2, 3, 4},
-                                      {2, 3, 4},
-                                      {2, 3, 4},
-                                      {2, 3, 4},
-                                      {2, 3, 4},
-                                      {2, 3, 4},
-                                      {2, 3, 4} };
+    hsize_t size[2];
+    hsize_t offset[2];
+    hsize_t dimsext[2]    = {7, 3}; // extend dimensions
+    int     dataext[7][3] = {{2, 3, 4}, {2, 3, 4}, {2, 3, 4}, {2, 3, 4}, {2, 3, 4}, {2, 3, 4}, {2, 3, 4}};
 
     // Try block to detect exceptions raised by any of the calls inside it
-    try
-    {
+    try {
         // Turn off the auto-printing when failure occurs so that we can
         // handle the errors appropriately
         Exception::dontPrint();
@@ -63,15 +57,15 @@ int main (void)
         // for the instance 'dataspace'.  It can be deleted and used again
         // later for another dataspace.  An HDF5 identifier can be closed
         // by the destructor or the method 'close()'.
-        DataSpace *dataspace = new DataSpace (2, dims, maxdims);
+        DataSpace *dataspace = new DataSpace(2, dims, maxdims);
 
         // Modify dataset creation property to enable chunking
         DSetCreatPropList prop;
         prop.setChunk(2, chunk_dims);
 
         // Create the chunked dataset.  Note the use of pointer.
-        DataSet *dataset = new DataSet(file.createDataSet( DATASETNAME,
-                                 PredType::STD_I32BE, *dataspace, prop) );
+        DataSet *dataset =
+            new DataSet(file.createDataSet(DATASETNAME, PredType::STD_I32BE, *dataspace, prop));
 
         // Write data to dataset.
         dataset->write(data, PredType::NATIVE_INT);
@@ -82,9 +76,9 @@ int main (void)
         dataset->extend(size);
 
         // Select a hyperslab in extended portion of the dataset.
-        DataSpace *filespace = new DataSpace(dataset->getSpace ());
-        offset[0] = 3;
-        offset[1] = 0;
+        DataSpace *filespace = new DataSpace(dataset->getSpace());
+        offset[0]            = 3;
+        offset[1]            = 0;
         filespace->selectHyperslab(H5S_SELECT_SET, dimsext, offset);
 
         // Define memory space.
@@ -105,25 +99,26 @@ int main (void)
         // Re-open the file and read the data back
         // ---------------------------------------
 
-        int        rdata[10][3];
-        int        i,j, rank, rank_chunk;
-        hsize_t    chunk_dimsr[2], dimsr[2];
+        int     rdata[10][3];
+        int     i, j, rank, rank_chunk;
+        hsize_t chunk_dimsr[2], dimsr[2];
 
         // Open the file and dataset.
         file.openFile(FILE_NAME, H5F_ACC_RDONLY);
-        dataset = new DataSet(file.openDataSet( DATASETNAME));
+        dataset = new DataSet(file.openDataSet(DATASETNAME));
 
         // Get the dataset's dataspace and creation property list.
         filespace = new DataSpace(dataset->getSpace());
-        prop = dataset->getCreatePlist();
+        prop      = dataset->getCreatePlist();
 
         // Get information to obtain memory dataspace.
-        rank = filespace->getSimpleExtentNdims();
+        rank            = filespace->getSimpleExtentNdims();
         herr_t status_n = filespace->getSimpleExtentDims(dimsr);
 
         if (H5D_CHUNKED == prop.getLayout())
-             rank_chunk = prop.getChunk(rank, chunk_dimsr);
-        cout << "rank chunk = " << rank_chunk << endl;;
+            rank_chunk = prop.getChunk(rank, chunk_dimsr);
+        cout << "rank chunk = " << rank_chunk << endl;
+        ;
 
         memspace = new DataSpace(rank, dimsr, NULL);
         dataset->read(rdata, PredType::NATIVE_INT, *memspace, *filespace);
@@ -131,7 +126,7 @@ int main (void)
         cout << endl;
         for (j = 0; j < dimsr[0]; j++) {
             for (i = 0; i < dimsr[1]; i++)
-               cout << " " <<  rdata[j][i];
+                cout << " " << rdata[j][i];
             cout << endl;
         }
 
@@ -142,29 +137,25 @@ int main (void)
         delete dataset;
         file.close();
 
-    }  // end of try block
+    } // end of try block
 
     // catch failure caused by the H5File operations
-    catch(FileIException error)
-    {
+    catch (FileIException error) {
         error.printErrorStack();
         return -1;
     }
 
     // catch failure caused by the DataSet operations
-    catch(DataSetIException error)
-    {
+    catch (DataSetIException error) {
         error.printErrorStack();
         return -1;
     }
 
     // catch failure caused by the DataSpace operations
-    catch(DataSpaceIException error)
-    {
+    catch (DataSpaceIException error) {
         error.printErrorStack();
         return -1;
     }
 
-    return 0;  // successfully terminated
+    return 0; // successfully terminated
 }
-

c++/examples/h5tutr_rdwt.cpp

@@ -6,7 +6,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
@@ -21,53 +21,51 @@
 #include "H5Cpp.h"
 using namespace H5;
 
-const H5std_string      FILE_NAME("h5tutr_dset.h5");
-const H5std_string      DATASET_NAME("dset");
-const int       DIM0 = 4;                      // dataset dimensions
-const int       DIM1 = 6;
+const H5std_string FILE_NAME("h5tutr_dset.h5");
+const H5std_string DATASET_NAME("dset");
+const int          DIM0 = 4; // dataset dimensions
+const int          DIM1 = 6;
 
-int main (void)
+int
+main(void)
 {
 
     // Data initialization.
 
     int i, j;
-    int data[DIM0][DIM1];           // buffer for data to write
+    int data[DIM0][DIM1]; // buffer for data to write
 
     for (j = 0; j < DIM0; j++)
         for (i = 0; i < DIM1; i++)
-         data[j][i] = i * 6 + j + 1;
+            data[j][i] = i * 6 + j + 1;
 
     // Try block to detect exceptions raised by any of the calls inside it
-    try
-    {
+    try {
         // Turn off the auto-printing when failure occurs so that we can
         // handle the errors appropriately
         Exception::dontPrint();
 
         // Open an existing file and dataset.
-        H5File file(FILE_NAME, H5F_ACC_RDWR);
+        H5File  file(FILE_NAME, H5F_ACC_RDWR);
         DataSet dataset = file.openDataSet(DATASET_NAME);
 
         // Write the data to the dataset using default memory space, file
         // space, and transfer properties.
         dataset.write(data, PredType::NATIVE_INT);
 
-    }  // end of try block
+    } // end of try block
 
     // catch failure caused by the H5File operations
-    catch(FileIException error)
-    {
+    catch (FileIException error) {
         error.printErrorStack();
         return -1;
     }
 
     // catch failure caused by the DataSet operations
-    catch(DataSetIException error)
-    {
+    catch (DataSetIException error) {
         error.printErrorStack();
         return -1;
     }
 
-    return 0;  // successfully terminated
+    return 0; // successfully terminated
 }

c++/examples/h5tutr_subset.cpp

@@ -6,7 +6,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
@@ -24,23 +24,23 @@ using std::endl;
 #include "H5Cpp.h"
 using namespace H5;
 
-const H5std_string      FILE_NAME("h5tutr_subset.h5");
-const H5std_string      DATASET_NAME("IntArray");
+const H5std_string FILE_NAME("h5tutr_subset.h5");
+const H5std_string DATASET_NAME("IntArray");
 
-const int     RANK = 2;
-const int     DIM0_SUB = 3;     // subset dimensions
-const int     DIM1_SUB = 4;
-const int     DIM0 = 8;         // size of dataset
-const int     DIM1 = 10;
+const int RANK     = 2;
+const int DIM0_SUB = 3; // subset dimensions
+const int DIM1_SUB = 4;
+const int DIM0     = 8; // size of dataset
+const int DIM1     = 10;
 
-int main (void)
+int
+main(void)
 {
-    int     i,j;
-    int     data[DIM0][DIM1], sdata[DIM0_SUB][DIM1_SUB], rdata[DIM0][DIM1];
+    int i, j;
+    int data[DIM0][DIM1], sdata[DIM0_SUB][DIM1_SUB], rdata[DIM0][DIM1];
 
     // Try block to detect exceptions raised by any of the calls inside it
-    try
-    {
+    try {
         // Turn off the auto-printing when failure occurs so that we can
         // handle the errors appropriately
         Exception::dontPrint();
@@ -54,28 +54,26 @@ int main (void)
         H5File file(FILE_NAME, H5F_ACC_TRUNC);
 
         hsize_t dims[2];
-        dims[0] = DIM0;
-        dims[1] = DIM1;
-        DataSpace dataspace = DataSpace (RANK, dims);
-
-        DataSet dataset(file.createDataSet( DATASET_NAME,
-                                         PredType::STD_I32BE, dataspace) );
+        dims[0]             = DIM0;
+        dims[1]             = DIM1;
+        DataSpace dataspace = DataSpace(RANK, dims);
 
+        DataSet dataset(file.createDataSet(DATASET_NAME, PredType::STD_I32BE, dataspace));
 
         for (j = 0; j < DIM0; j++) {
-             for (i = 0; i < DIM1; i++)
-                 if (i< (DIM1/2))
+            for (i = 0; i < DIM1; i++)
+                if (i < (DIM1 / 2))
                     data[j][i] = 1;
-                 else
+                else
                     data[j][i] = 2;
-              }
+        }
 
         dataset.write(data, PredType::NATIVE_INT);
 
         cout << endl << "Data Written to File:" << endl;
         for (j = 0; j < DIM0; j++) {
             for (i = 0; i < DIM1; i++)
-               cout << " " <<  data[j][i];
+                cout << " " << data[j][i];
             cout << endl;
         }
 
@@ -99,8 +97,8 @@ int main (void)
         offset[0] = 1;
         offset[1] = 2;
 
-        count[0]  = DIM0_SUB;
-        count[1]  = DIM1_SUB;
+        count[0] = DIM0_SUB;
+        count[1] = DIM1_SUB;
 
         stride[0] = 1;
         stride[1] = 1;
@@ -126,17 +124,16 @@ int main (void)
         cout << "  offset=1x2 stride=1x1 count=3x4 block=1x1" << endl;
         for (j = 0; j < DIM0_SUB; j++) {
             for (i = 0; i < DIM1_SUB; i++)
-               sdata[j][i] = 5;
+                sdata[j][i] = 5;
         }
 
         dataset.write(sdata, PredType::NATIVE_INT, memspace, dataspace);
         dataset.read(rdata, PredType::NATIVE_INT);
 
-
         cout << endl << "Data in File after Subset is Written:" << endl;
         for (i = 0; i < DIM0; i++) {
             for (j = 0; j < DIM1; j++)
-               cout << " " <<  rdata[i][j];
+                cout << " " << rdata[i][j];
             cout << endl;
         }
         cout << endl;
@@ -148,29 +145,25 @@ int main (void)
         dataset.close();
         file.close();
 
-    }  // end of try block
+    } // end of try block
 
     // catch failure caused by the H5File operations
-    catch(FileIException error)
-    {
+    catch (FileIException error) {
         error.printErrorStack();
         return -1;
     }
 
     // catch failure caused by the DataSet operations
-    catch(DataSetIException error)
-    {
+    catch (DataSetIException error) {
         error.printErrorStack();
         return -1;
     }
 
     // catch failure caused by the DataSpace operations
-    catch(DataSpaceIException error)
-    {
+    catch (DataSpaceIException error) {
         error.printErrorStack();
         return -1;
     }
 
-    return 0;  // successfully terminated
+    return 0; // successfully terminated
 }
-

c++/examples/readdata.cpp

@@ -6,7 +6,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
@@ -29,184 +29,174 @@ using std::endl;
 #include "H5Cpp.h"
 using namespace H5;
 
-const H5std_string FILE_NAME( "SDS.h5" );
-const H5std_string DATASET_NAME( "IntArray" );
-const int    NX_SUB = 3;        // hyperslab dimensions
-const int    NY_SUB = 4;
-const int    NX = 7;            // output buffer dimensions
-const int    NY = 7;
-const int    NZ = 3;
-const int    RANK_OUT = 3;
+const H5std_string FILE_NAME("SDS.h5");
+const H5std_string DATASET_NAME("IntArray");
+const int          NX_SUB   = 3; // hyperslab dimensions
+const int          NY_SUB   = 4;
+const int          NX       = 7; // output buffer dimensions
+const int          NY       = 7;
+const int          NZ       = 3;
+const int          RANK_OUT = 3;
 
-int main (void)
+int
+main(void)
 {
-   /*
-    * Output buffer initialization.
-    */
-   int i, j, k;
-   int         data_out[NX][NY][NZ ]; /* output buffer */
-   for (j = 0; j < NX; j++)
-   {
-      for (i = 0; i < NY; i++)
-      {
-         for (k = 0; k < NZ ; k++)
-            data_out[j][i][k] = 0;
-      }
-   }
+    /*
+     * Output buffer initialization.
+     */
+    int i, j, k;
+    int data_out[NX][NY][NZ]; /* output buffer */
+    for (j = 0; j < NX; j++) {
+        for (i = 0; i < NY; i++) {
+            for (k = 0; k < NZ; k++)
+                data_out[j][i][k] = 0;
+        }
+    }
 
-   /*
-    * Try block to detect exceptions raised by any of the calls inside it
-    */
-   try
-   {
-      /*
-       * Turn off the auto-printing when failure occurs so that we can
-       * handle the errors appropriately
-       */
-      Exception::dontPrint();
+    /*
+     * Try block to detect exceptions raised by any of the calls inside it
+     */
+    try {
+        /*
+         * Turn off the auto-printing when failure occurs so that we can
+         * handle the errors appropriately
+         */
+        Exception::dontPrint();
 
-      /*
-       * Open the specified file and the specified dataset in the file.
-       */
-      H5File file( FILE_NAME, H5F_ACC_RDONLY );
-      DataSet dataset = file.openDataSet( DATASET_NAME );
+        /*
+         * Open the specified file and the specified dataset in the file.
+         */
+        H5File  file(FILE_NAME, H5F_ACC_RDONLY);
+        DataSet dataset = file.openDataSet(DATASET_NAME);
 
-      /*
-       * Get the class of the datatype that is used by the dataset.
-       */
-      H5T_class_t type_class = dataset.getTypeClass();
+        /*
+         * Get the class of the datatype that is used by the dataset.
+         */
+        H5T_class_t type_class = dataset.getTypeClass();
 
-      /*
-       * Get class of datatype and print message if it's an integer.
-       */
-      if( type_class == H5T_INTEGER )
-      {
-         cout << "Data set has INTEGER type" << endl;
+        /*
+         * Get class of datatype and print message if it's an integer.
+         */
+        if (type_class == H5T_INTEGER) {
+            cout << "Data set has INTEGER type" << endl;
 
-         /*
-          * Get the integer datatype
-          */
-         IntType intype = dataset.getIntType();
+            /*
+             * Get the integer datatype
+             */
+            IntType intype = dataset.getIntType();
 
-         /*
-          * Get order of datatype and print message if it's a little endian.
-          */
-         H5std_string order_string;
-         H5T_order_t order = intype.getOrder( order_string );
-         cout << order_string << endl;
+            /*
+             * Get order of datatype and print message if it's a little endian.
+             */
+            H5std_string order_string;
+            H5T_order_t  order = intype.getOrder(order_string);
+            cout << order_string << endl;
 
-         /*
-          * Get size of the data element stored in file and print it.
-          */
-         size_t size = intype.getSize();
-         cout << "Data size is " << size << endl;
-      }
+            /*
+             * Get size of the data element stored in file and print it.
+             */
+            size_t size = intype.getSize();
+            cout << "Data size is " << size << endl;
+        }
 
-      /*
-       * Get dataspace of the dataset.
-       */
-      DataSpace dataspace = dataset.getSpace();
+        /*
+         * Get dataspace of the dataset.
+         */
+        DataSpace dataspace = dataset.getSpace();
 
-      /*
-       * Get the number of dimensions in the dataspace.
-       */
-      int rank = dataspace.getSimpleExtentNdims();
+        /*
+         * Get the number of dimensions in the dataspace.
+         */
+        int rank = dataspace.getSimpleExtentNdims();
 
-      /*
-       * Get the dimension size of each dimension in the dataspace and
-       * display them.
-       */
-      hsize_t dims_out[2];
-      int ndims = dataspace.getSimpleExtentDims( dims_out, NULL);
-      cout << "rank " << rank << ", dimensions " <<
-              (unsigned long)(dims_out[0]) << " x " <<
-              (unsigned long)(dims_out[1]) << endl;
+        /*
+         * Get the dimension size of each dimension in the dataspace and
+         * display them.
+         */
+        hsize_t dims_out[2];
+        int     ndims = dataspace.getSimpleExtentDims(dims_out, NULL);
+        cout << "rank " << rank << ", dimensions " << (unsigned long)(dims_out[0]) << " x "
+             << (unsigned long)(dims_out[1]) << endl;
 
-      /*
-       * Define hyperslab in the dataset; implicitly giving strike and
-       * block NULL.
-       */
-      hsize_t      offset[2];   // hyperslab offset in the file
-      hsize_t      count[2];    // size of the hyperslab in the file
-      offset[0] = 1;
-      offset[1] = 2;
-      count[0]  = NX_SUB;
-      count[1]  = NY_SUB;
-      dataspace.selectHyperslab( H5S_SELECT_SET, count, offset );
+        /*
+         * Define hyperslab in the dataset; implicitly giving strike and
+         * block NULL.
+         */
+        hsize_t offset[2]; // hyperslab offset in the file
+        hsize_t count[2];  // size of the hyperslab in the file
+        offset[0] = 1;
+        offset[1] = 2;
+        count[0]  = NX_SUB;
+        count[1]  = NY_SUB;
+        dataspace.selectHyperslab(H5S_SELECT_SET, count, offset);
 
-      /*
-       * Define the memory dataspace.
-       */
-      hsize_t     dimsm[3];              /* memory space dimensions */
-      dimsm[0] = NX;
-      dimsm[1] = NY;
-      dimsm[2] = NZ ;
-      DataSpace memspace( RANK_OUT, dimsm );
+        /*
+         * Define the memory dataspace.
+         */
+        hsize_t dimsm[3]; /* memory space dimensions */
+        dimsm[0] = NX;
+        dimsm[1] = NY;
+        dimsm[2] = NZ;
+        DataSpace memspace(RANK_OUT, dimsm);
 
-      /*
-       * Define memory hyperslab.
-       */
-      hsize_t      offset_out[3];       // hyperslab offset in memory
-      hsize_t      count_out[3];        // size of the hyperslab in memory
-      offset_out[0] = 3;
-      offset_out[1] = 0;
-      offset_out[2] = 0;
-      count_out[0]  = NX_SUB;
-      count_out[1]  = NY_SUB;
-      count_out[2]  = 1;
-      memspace.selectHyperslab( H5S_SELECT_SET, count_out, offset_out );
+        /*
+         * Define memory hyperslab.
+         */
+        hsize_t offset_out[3]; // hyperslab offset in memory
+        hsize_t count_out[3];  // size of the hyperslab in memory
+        offset_out[0] = 3;
+        offset_out[1] = 0;
+        offset_out[2] = 0;
+        count_out[0]  = NX_SUB;
+        count_out[1]  = NY_SUB;
+        count_out[2]  = 1;
+        memspace.selectHyperslab(H5S_SELECT_SET, count_out, offset_out);
 
-      /*
-       * Read data from hyperslab in the file into the hyperslab in
-       * memory and display the data.
-       */
-      dataset.read( data_out, PredType::NATIVE_INT, memspace, dataspace );
+        /*
+         * Read data from hyperslab in the file into the hyperslab in
+         * memory and display the data.
+         */
+        dataset.read(data_out, PredType::NATIVE_INT, memspace, dataspace);
 
-      for (j = 0; j < NX; j++)
-      {
-        for (i = 0; i < NY; i++)
-           cout << data_out[j][i][0] << " ";
-        cout << endl;
-      }
-      /*
-       * 0 0 0 0 0 0 0
-       * 0 0 0 0 0 0 0
-       * 0 0 0 0 0 0 0
-       * 3 4 5 6 0 0 0
-       * 4 5 6 7 0 0 0
-       * 5 6 7 8 0 0 0
-       * 0 0 0 0 0 0 0
-       */
-   }  // end of try block
+        for (j = 0; j < NX; j++) {
+            for (i = 0; i < NY; i++)
+                cout << data_out[j][i][0] << " ";
+            cout << endl;
+        }
+        /*
+         * 0 0 0 0 0 0 0
+         * 0 0 0 0 0 0 0
+         * 0 0 0 0 0 0 0
+         * 3 4 5 6 0 0 0
+         * 4 5 6 7 0 0 0
+         * 5 6 7 8 0 0 0
+         * 0 0 0 0 0 0 0
+         */
+    } // end of try block
 
-   // catch failure caused by the H5File operations
-   catch( FileIException error )
-   {
-      error.printErrorStack();
-      return -1;
-   }
+    // catch failure caused by the H5File operations
+    catch (FileIException error) {
+        error.printErrorStack();
+        return -1;
+    }
 
-   // catch failure caused by the DataSet operations
-   catch( DataSetIException error )
-   {
-      error.printErrorStack();
-      return -1;
-   }
+    // catch failure caused by the DataSet operations
+    catch (DataSetIException error) {
+        error.printErrorStack();
+        return -1;
+    }
 
-   // catch failure caused by the DataSpace operations
-   catch( DataSpaceIException error )
-   {
-      error.printErrorStack();
-      return -1;
-   }
+    // catch failure caused by the DataSpace operations
+    catch (DataSpaceIException error) {
+        error.printErrorStack();
+        return -1;
+    }
 
-   // catch failure caused by the DataSpace operations
-   catch( DataTypeIException error )
-   {
-      error.printErrorStack();
-      return -1;
-   }
+    // catch failure caused by the DataSpace operations
+    catch (DataTypeIException error) {
+        error.printErrorStack();
+        return -1;
+    }
 
-   return 0;  // successfully terminated
+    return 0; // successfully terminated
 }
-

c++/examples/run-c++-ex.sh.in

@@ -6,7 +6,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 

c++/examples/testh5c++.sh.in

@@ -7,7 +7,7 @@
 # This file is part of HDF5.  The full HDF5 copyright notice, including
 # terms governing use, modification, and redistribution, is contained in
 # the COPYING file, which can be found at the root of the source code
-# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# distribution tree, or in https://www.hdfgroup.org/licenses.
 # If you do not have access to either file, you may request a copy from
 # help@hdfgroup.org.
 #

c++/examples/writedata.cpp

@@ -6,7 +6,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
@@ -32,31 +32,31 @@ using std::endl;
 #include "H5Cpp.h"
 using namespace H5;
 
-const H5std_string FILE_NAME( "Select.h5" );
-const H5std_string DATASET_NAME( "Matrix in file" );
-const int   MSPACE1_RANK = 1;   // Rank of the first dataset in memory
-const int   MSPACE1_DIM = 50;   // Dataset size in memory
-const int   MSPACE2_RANK = 1;   // Rank of the second dataset in memory
-const int   MSPACE2_DIM = 4;    // Dataset size in memory
-const int   FSPACE_RANK = 2;    // Dataset rank as it is stored in the file
-const int   FSPACE_DIM1 = 8;    // Dimension sizes of the dataset as it is
-const int   FSPACE_DIM2 = 12;   //      stored in the file
-const int   MSPACE_RANK = 2;    // Rank of the first dataset in memory
-const int   MSPACE_DIM1 = 8;    // We will read dataset back from the file
-const int   MSPACE_DIM2 = 9;    //      to the dataset in memory with these
-                                //      dataspace parameters
-const int   NPOINTS = 4;        // Number of points that will be selected
-                                //      and overwritten
+const H5std_string FILE_NAME("Select.h5");
+const H5std_string DATASET_NAME("Matrix in file");
+const int          MSPACE1_RANK = 1;  // Rank of the first dataset in memory
+const int          MSPACE1_DIM  = 50; // Dataset size in memory
+const int          MSPACE2_RANK = 1;  // Rank of the second dataset in memory
+const int          MSPACE2_DIM  = 4;  // Dataset size in memory
+const int          FSPACE_RANK  = 2;  // Dataset rank as it is stored in the file
+const int          FSPACE_DIM1  = 8;  // Dimension sizes of the dataset as it is
+const int          FSPACE_DIM2  = 12; //      stored in the file
+const int          MSPACE_RANK  = 2;  // Rank of the first dataset in memory
+const int          MSPACE_DIM1  = 8;  // We will read dataset back from the file
+const int          MSPACE_DIM2  = 9;  //      to the dataset in memory with these
+                                      //      dataspace parameters
+const int NPOINTS = 4;                // Number of points that will be selected
+                                      //      and overwritten
 
-int main (void)
+int
+main(void)
 {
-    int   i,j; // loop indices */
+    int i, j; // loop indices */
 
     /*
      * Try block to detect exceptions raised by any of the calls inside it
      */
-    try
-    {
+    try {
         /*
          * Turn off the auto-printing when failure occurs so that we can
          * handle the errors appropriately
@@ -66,47 +66,51 @@ int main (void)
         /*
          * Create a file.
          */
-        H5File* file = new H5File( FILE_NAME, H5F_ACC_TRUNC );
+        H5File *file = new H5File(FILE_NAME, H5F_ACC_TRUNC);
 
         /*
-        * Create property list for a dataset and set up fill values.
-        */
-        int fillvalue = 0;   /* Fill value for the dataset */
+         * Create property list for a dataset and set up fill values.
+         */
+        int               fillvalue = 0; /* Fill value for the dataset */
         DSetCreatPropList plist;
         plist.setFillValue(PredType::NATIVE_INT, &fillvalue);
 
         /*
          * Create dataspace for the dataset in the file.
          */
-        hsize_t fdim[] = {FSPACE_DIM1, FSPACE_DIM2}; // dim sizes of ds (on disk)
-        DataSpace fspace( FSPACE_RANK, fdim );
+        hsize_t   fdim[] = {FSPACE_DIM1, FSPACE_DIM2}; // dim sizes of ds (on disk)
+        DataSpace fspace(FSPACE_RANK, fdim);
 
         /*
          * Create dataset and write it into the file.
          */
-        DataSet* dataset = new DataSet(file->createDataSet(
-                DATASET_NAME, PredType::NATIVE_INT, fspace, plist));
+        DataSet *dataset =
+            new DataSet(file->createDataSet(DATASET_NAME, PredType::NATIVE_INT, fspace, plist));
 
         /*
          * Select hyperslab for the dataset in the file, using 3x2 blocks,
          * (4,3) stride and (2,4) count starting at the position (0,1).
          */
-        hsize_t start[2]; // Start of hyperslab
+        hsize_t start[2];  // Start of hyperslab
         hsize_t stride[2]; // Stride of hyperslab
         hsize_t count[2];  // Block count
         hsize_t block[2];  // Block sizes
-        start[0]  = 0; start[1]  = 1;
-        stride[0] = 4; stride[1] = 3;
-        count[0]  = 2; count[1]  = 4;
-        block[0]  = 3; block[1]  = 2;
-        fspace.selectHyperslab( H5S_SELECT_SET, count, start, stride, block);
+        start[0]  = 0;
+        start[1]  = 1;
+        stride[0] = 4;
+        stride[1] = 3;
+        count[0]  = 2;
+        count[1]  = 4;
+        block[0]  = 3;
+        block[1]  = 2;
+        fspace.selectHyperslab(H5S_SELECT_SET, count, start, stride, block);
 
         /*
          * Create dataspace for the first dataset.
          */
-        hsize_t dim1[] = {MSPACE1_DIM};  /* Dimension size of the first dataset
-                                           (in memory) */
-        DataSpace mspace1( MSPACE1_RANK, dim1 );
+        hsize_t dim1[] = {MSPACE1_DIM}; /* Dimension size of the first dataset
+                                          (in memory) */
+        DataSpace mspace1(MSPACE1_RANK, dim1);
 
         /*
          * Select hyperslab.
@@ -117,7 +121,7 @@ int main (void)
         stride[0] = 1;
         count[0]  = 48;
         block[0]  = 1;
-        mspace1.selectHyperslab( H5S_SELECT_SET, count, start, stride, block);
+        mspace1.selectHyperslab(H5S_SELECT_SET, count, start, stride, block);
 
         /*
          * Write selection from the vector buffer to the dataset in the file.
@@ -132,7 +136,7 @@ int main (void)
          *                    0 41 42  0 43 44  0 45 46  0 47 48
          *                    0  0  0  0  0  0  0  0  0  0  0  0
          */
-        int    vector[MSPACE1_DIM];     // vector buffer for dset
+        int vector[MSPACE1_DIM]; // vector buffer for dset
 
         /*
          * Buffer initialization.
@@ -141,7 +145,7 @@ int main (void)
         for (i = 1; i < MSPACE1_DIM - 1; i++)
             vector[i] = i;
 
-        dataset->write( vector, PredType::NATIVE_INT, mspace1, fspace );
+        dataset->write(vector, PredType::NATIVE_INT, mspace1, fspace);
 
         /*
          * Reset the selection for the file dataspace fid.
@@ -151,27 +155,31 @@ int main (void)
         /*
          * Create dataspace for the second dataset.
          */
-        hsize_t dim2[] = {MSPACE2_DIM};  /* Dimension size of the second dataset
-                                           (in memory */
-        DataSpace mspace2( MSPACE2_RANK, dim2 );
+        hsize_t dim2[] = {MSPACE2_DIM}; /* Dimension size of the second dataset
+                                          (in memory */
+        DataSpace mspace2(MSPACE2_RANK, dim2);
 
         /*
          * Select sequence of NPOINTS points in the file dataspace.
          */
         hsize_t coord[NPOINTS][FSPACE_RANK]; /* Array to store selected points
                                                 from the file dataspace */
-        coord[0][0] = 0; coord[0][1] = 0;
-        coord[1][0] = 3; coord[1][1] = 3;
-        coord[2][0] = 3; coord[2][1] = 5;
-        coord[3][0] = 5; coord[3][1] = 6;
+        coord[0][0] = 0;
+        coord[0][1] = 0;
+        coord[1][0] = 3;
+        coord[1][1] = 3;
+        coord[2][0] = 3;
+        coord[2][1] = 5;
+        coord[3][0] = 5;
+        coord[3][1] = 6;
 
-        fspace.selectElements( H5S_SELECT_SET, NPOINTS, (const hsize_t *)coord);
+        fspace.selectElements(H5S_SELECT_SET, NPOINTS, (const hsize_t *)coord);
 
         /*
          * Write new selection of points to the dataset.
          */
-        int    values[] = {53, 59, 61, 67};  /* New values to be written */
-        dataset->write( values, PredType::NATIVE_INT, mspace2, fspace );
+        int values[] = {53, 59, 61, 67}; /* New values to be written */
+        dataset->write(values, PredType::NATIVE_INT, mspace2, fspace);
 
         /*
          * File dataset should look like this:
@@ -195,12 +203,12 @@ int main (void)
         /*
          * Open the file.
          */
-        file = new H5File( FILE_NAME, H5F_ACC_RDONLY );
+        file = new H5File(FILE_NAME, H5F_ACC_RDONLY);
 
         /*
          * Open the dataset.
          */
-        dataset = new DataSet( file->openDataSet( DATASET_NAME ));
+        dataset = new DataSet(file->openDataSet(DATASET_NAME));
 
         /*
          * Get dataspace of the dataset.
@@ -215,10 +223,14 @@ int main (void)
          *                      0 59  0 61
          *
          */
-        start[0] = 1; start[1] = 2;
-        block[0] = 1; block[1] = 1;
-        stride[0] = 1; stride[1] = 1;
-        count[0]  = 3; count[1]  = 4;
+        start[0]  = 1;
+        start[1]  = 2;
+        block[0]  = 1;
+        block[1]  = 1;
+        stride[0] = 1;
+        stride[1] = 1;
+        count[0]  = 3;
+        count[1]  = 4;
         fspace.selectHyperslab(H5S_SELECT_SET, count, start, stride, block);
 
         /*
@@ -234,10 +246,14 @@ int main (void)
          *                                              19 20
          *                                               0 61
          */
-        start[0] = 2; start[1] = 4;
-        block[0] = 1; block[1] = 1;
-        stride[0] = 1; stride[1] = 1;
-        count[0]  = 6; count[1]  = 5;
+        start[0]  = 2;
+        start[1]  = 4;
+        block[0]  = 1;
+        block[1]  = 1;
+        stride[0] = 1;
+        stride[1] = 1;
+        count[0]  = 6;
+        count[1]  = 5;
         fspace.selectHyperslab(H5S_SELECT_OR, count, start, stride, block);
 
         /*
@@ -253,15 +269,23 @@ int main (void)
          * Select two hyperslabs in memory. Hyperslabs has the same
          * size and shape as the selected hyperslabs for the file dataspace.
          */
-        start[0] = 0; start[1] = 0;
-        block[0] = 1; block[1] = 1;
-        stride[0] = 1; stride[1] = 1;
-        count[0]  = 3; count[1]  = 4;
+        start[0]  = 0;
+        start[1]  = 0;
+        block[0]  = 1;
+        block[1]  = 1;
+        stride[0] = 1;
+        stride[1] = 1;
+        count[0]  = 3;
+        count[1]  = 4;
         mspace.selectHyperslab(H5S_SELECT_SET, count, start, stride, block);
-        start[0] = 1; start[1] = 2;
-        block[0] = 1; block[1] = 1;
-        stride[0] = 1; stride[1] = 1;
-        count[0]  = 6; count[1]  = 5;
+        start[0]  = 1;
+        start[1]  = 2;
+        block[0]  = 1;
+        block[1]  = 1;
+        stride[0] = 1;
+        stride[1] = 1;
+        count[0]  = 6;
+        count[1]  = 5;
         mspace.selectHyperslab(H5S_SELECT_OR, count, start, stride, block);
 
         /*
@@ -289,9 +313,8 @@ int main (void)
          *                     0  0  0  0  0  0  0  0  0
          *                     0  0  0  0  0  0  0  0  0
          */
-        for (i=0; i < MSPACE_DIM1; i++)
-        {
-            for(j=0; j < MSPACE_DIM2; j++)
+        for (i = 0; i < MSPACE_DIM1; i++) {
+            for (j = 0; j < MSPACE_DIM2; j++)
                 cout << matrix_out[i][j] << "  ";
             cout << endl;
         }
@@ -301,28 +324,25 @@ int main (void)
          */
         delete dataset;
         delete file;
-   }  // end of try block
+    } // end of try block
 
-   // catch failure caused by the H5File operations
-   catch( FileIException error )
-   {
+    // catch failure caused by the H5File operations
+    catch (FileIException error) {
         error.printErrorStack();
         return -1;
-   }
+    }
 
-   // catch failure caused by the DataSet operations
-   catch( DataSetIException error )
-   {
+    // catch failure caused by the DataSet operations
+    catch (DataSetIException error) {
         error.printErrorStack();
         return -1;
-   }
+    }
 
-   // catch failure caused by the DataSpace operations
-   catch( DataSpaceIException error )
-   {
+    // catch failure caused by the DataSpace operations
+    catch (DataSpaceIException error) {
         error.printErrorStack();
         return -1;
-   }
+    }
 
-   return 0;
+    return 0;
 }

c++/src/H5AbstractDs.cpp

@@ -6,7 +6,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
@@ -38,7 +38,9 @@ namespace H5 {
 ///\brief       Default constructor
 // Programmer   Binh-Minh Ribler - 2000
 //--------------------------------------------------------------------------
-AbstractDs::AbstractDs(){}
+AbstractDs::AbstractDs()
+{
+}
 
 //--------------------------------------------------------------------------
 // Function:    AbstractDs default constructor
@@ -61,19 +63,20 @@ AbstractDs::AbstractDs(){}
 ///\exception   H5::DataTypeIException
 // Programmer   Binh-Minh Ribler - 2000
 //--------------------------------------------------------------------------
-H5T_class_t AbstractDs::getTypeClass() const
+H5T_class_t
+AbstractDs::getTypeClass() const
 {
     // Gets the datatype used by this dataset or attribute.
     // p_get_type calls either H5Dget_type or H5Aget_type depending on
     // which object invokes getTypeClass
     hid_t datatype_id;
     try {
-        datatype_id = p_get_type();  // returned value is already validated
+        datatype_id = p_get_type(); // returned value is already validated
     }
-    catch (DataSetIException& E) {
+    catch (DataSetIException &E) {
         throw DataTypeIException("DataSet::getTypeClass", E.getDetailMsg());
     }
-    catch (AttributeIException& E) {
+    catch (AttributeIException &E) {
         throw DataTypeIException("Attribute::getTypeClass", E.getDetailMsg());
     }
 
@@ -82,8 +85,7 @@ H5T_class_t AbstractDs::getTypeClass() const
 
     // Close temporary datatype_id
     herr_t ret_value = H5Tclose(datatype_id);
-    if (ret_value < 0)
-    {
+    if (ret_value < 0) {
         if (fromClass() == "DataSet")
             throw DataTypeIException("DataSet::getTypeClass", "H5Tclose failed");
         else if (fromClass() == "Attribute")
@@ -91,14 +93,13 @@ H5T_class_t AbstractDs::getTypeClass() const
     }
 
     // Check on the returned type_class
-    if (type_class == H5T_NO_CLASS)
-    {
+    if (type_class == H5T_NO_CLASS) {
         if (fromClass() == "DataSet")
             throw DataTypeIException("DataSet::getTypeClass", "H5Tget_class returns H5T_NO_CLASS");
         else if (fromClass() == "Attribute")
             throw DataTypeIException("Attribute::getTypeClass", "H5Tget_class returns H5T_NO_CLASS");
     }
-    return(type_class);
+    return (type_class);
 }
 
 //--------------------------------------------------------------------------
@@ -109,7 +110,8 @@ H5T_class_t AbstractDs::getTypeClass() const
 ///\exception   H5::DataTypeIException
 // Programmer   Binh-Minh Ribler - 2000
 //--------------------------------------------------------------------------
-DataType AbstractDs::getDataType() const
+DataType
+AbstractDs::getDataType() const
 {
     // Gets the id of the datatype used by this dataset or attribute using
     // p_get_type.  p_get_type calls either H5Dget_type or H5Aget_type
@@ -118,12 +120,12 @@ DataType AbstractDs::getDataType() const
     try {
         DataType datatype;
         f_DataType_setId(&datatype, p_get_type());
-        return(datatype);
+        return (datatype);
     }
-    catch (DataSetIException& E) {
+    catch (DataSetIException &E) {
         throw DataTypeIException("DataSet::getDataType", E.getDetailMsg());
     }
-    catch (AttributeIException& E) {
+    catch (AttributeIException &E) {
         throw DataTypeIException("Attribute::getDataType", E.getDetailMsg());
     }
 }
@@ -136,7 +138,8 @@ DataType AbstractDs::getDataType() const
 ///\exception   H5::DataTypeIException
 // Programmer   Binh-Minh Ribler - Jul, 2005
 //--------------------------------------------------------------------------
-ArrayType AbstractDs::getArrayType() const
+ArrayType
+AbstractDs::getArrayType() const
 {
     // Gets the id of the datatype used by this dataset or attribute using
     // p_get_type.  p_get_type calls either H5Dget_type or H5Aget_type
@@ -147,12 +150,12 @@ ArrayType AbstractDs::getArrayType() const
         // problem described in the JIRA issue HDFFV-7947
         ArrayType arraytype;
         f_DataType_setId(&arraytype, p_get_type());
-        return(arraytype);
+        return (arraytype);
     }
-    catch (DataSetIException& E) {
+    catch (DataSetIException &E) {
         throw DataTypeIException("DataSet::getArrayType", E.getDetailMsg());
     }
-    catch (AttributeIException& E) {
+    catch (AttributeIException &E) {
         throw DataTypeIException("Attribute::getArrayType", E.getDetailMsg());
     }
 }
@@ -165,7 +168,8 @@ ArrayType AbstractDs::getArrayType() const
 ///\exception   H5::DataTypeIException
 // Programmer   Binh-Minh Ribler - 2000
 //--------------------------------------------------------------------------
-CompType AbstractDs::getCompType() const
+CompType
+AbstractDs::getCompType() const
 {
     // Gets the id of the datatype used by this dataset or attribute using
     // p_get_type.  p_get_type calls either H5Dget_type or H5Aget_type
@@ -174,12 +178,12 @@ CompType AbstractDs::getCompType() const
     try {
         CompType comptype;
         f_DataType_setId(&comptype, p_get_type());
-        return(comptype);
+        return (comptype);
     }
-    catch (DataSetIException& E) {
+    catch (DataSetIException &E) {
         throw DataTypeIException("DataSet::getCompType", E.getDetailMsg());
     }
-    catch (AttributeIException& E) {
+    catch (AttributeIException &E) {
         throw DataTypeIException("Attribute::getCompType", E.getDetailMsg());
     }
 }
@@ -192,7 +196,8 @@ CompType AbstractDs::getCompType() const
 ///\exception   H5::DataTypeIException
 // Programmer   Binh-Minh Ribler - 2000
 //--------------------------------------------------------------------------
-EnumType AbstractDs::getEnumType() const
+EnumType
+AbstractDs::getEnumType() const
 {
     // Gets the id of the datatype used by this dataset or attribute using
     // p_get_type.  p_get_type calls either H5Dget_type or H5Aget_type
@@ -201,12 +206,12 @@ EnumType AbstractDs::getEnumType() const
     try {
         EnumType enumtype;
         f_DataType_setId(&enumtype, p_get_type());
-        return(enumtype);
+        return (enumtype);
     }
-    catch (DataSetIException& E) {
+    catch (DataSetIException &E) {
         throw DataTypeIException("DataSet::getEnumType", E.getDetailMsg());
     }
-    catch (AttributeIException& E) {
+    catch (AttributeIException &E) {
         throw DataTypeIException("Attribute::getEnumType", E.getDetailMsg());
     }
 }
@@ -219,7 +224,8 @@ EnumType AbstractDs::getEnumType() const
 ///\exception   H5::DataTypeIException
 // Programmer   Binh-Minh Ribler - 2000
 //--------------------------------------------------------------------------
-IntType AbstractDs::getIntType() const
+IntType
+AbstractDs::getIntType() const
 {
     // Gets the id of the datatype used by this dataset or attribute using
     // p_get_type.  p_get_type calls either H5Dget_type or H5Aget_type
@@ -228,12 +234,12 @@ IntType AbstractDs::getIntType() const
     try {
         IntType inttype;
         f_DataType_setId(&inttype, p_get_type());
-        return(inttype);
+        return (inttype);
     }
-    catch (DataSetIException& E) {
+    catch (DataSetIException &E) {
         throw DataTypeIException("DataSet::getIntType", E.getDetailMsg());
     }
-    catch (AttributeIException& E) {
+    catch (AttributeIException &E) {
         throw DataTypeIException("Attribute::getIntType", E.getDetailMsg());
     }
 }
@@ -246,7 +252,8 @@ IntType AbstractDs::getIntType() const
 ///\exception   H5::DataTypeIException
 // Programmer   Binh-Minh Ribler - 2000
 //--------------------------------------------------------------------------
-FloatType AbstractDs::getFloatType() const
+FloatType
+AbstractDs::getFloatType() const
 {
     // Gets the id of the datatype used by this dataset or attribute using
     // p_get_type.  p_get_type calls either H5Dget_type or H5Aget_type
@@ -255,12 +262,12 @@ FloatType AbstractDs::getFloatType() const
     try {
         FloatType floatype;
         f_DataType_setId(&floatype, p_get_type());
-        return(floatype);
+        return (floatype);
     }
-    catch (DataSetIException& E) {
+    catch (DataSetIException &E) {
         throw DataTypeIException("DataSet::getFloatType", E.getDetailMsg());
     }
-    catch (AttributeIException& E) {
+    catch (AttributeIException &E) {
         throw DataTypeIException("Attribute::getFloatType", E.getDetailMsg());
     }
 }
@@ -273,7 +280,8 @@ FloatType AbstractDs::getFloatType() const
 ///\exception   H5::DataTypeIException
 // Programmer   Binh-Minh Ribler - 2000
 //--------------------------------------------------------------------------
-StrType AbstractDs::getStrType() const
+StrType
+AbstractDs::getStrType() const
 {
     // Gets the id of the datatype used by this dataset or attribute using
     // p_get_type.  p_get_type calls either H5Dget_type or H5Aget_type
@@ -282,12 +290,12 @@ StrType AbstractDs::getStrType() const
     try {
         StrType strtype;
         f_DataType_setId(&strtype, p_get_type());
-        return(strtype);
+        return (strtype);
     }
-    catch (DataSetIException& E) {
+    catch (DataSetIException &E) {
         throw DataTypeIException("DataSet::getStrType", E.getDetailMsg());
     }
-    catch (AttributeIException& E) {
+    catch (AttributeIException &E) {
         throw DataTypeIException("Attribute::getStrType", E.getDetailMsg());
     }
 }
@@ -300,7 +308,8 @@ StrType AbstractDs::getStrType() const
 ///\exception   H5::DataTypeIException
 // Programmer   Binh-Minh Ribler - Jul, 2005
 //--------------------------------------------------------------------------
-VarLenType AbstractDs::getVarLenType() const
+VarLenType
+AbstractDs::getVarLenType() const
 {
     // Gets the id of the datatype used by this dataset or attribute using
     // p_get_type.  p_get_type calls either H5Dget_type or H5Aget_type
@@ -309,12 +318,12 @@ VarLenType AbstractDs::getVarLenType() const
     try {
         VarLenType varlentype;
         f_DataType_setId(&varlentype, p_get_type());
-        return(varlentype);
+        return (varlentype);
     }
-    catch (DataSetIException& E) {
+    catch (DataSetIException &E) {
         throw DataTypeIException("DataSet::getVarLenType", E.getDetailMsg());
     }
-    catch (AttributeIException& E) {
+    catch (AttributeIException &E) {
         throw DataTypeIException("Attribute::getVarLenType", E.getDetailMsg());
     }
 }
@@ -324,6 +333,8 @@ VarLenType AbstractDs::getVarLenType() const
 ///\brief       Noop destructor.
 // Programmer   Binh-Minh Ribler - 2000
 //--------------------------------------------------------------------------
-AbstractDs::~AbstractDs() {}
+AbstractDs::~AbstractDs()
+{
+}
 
-} // end namespace
+} // namespace H5

c++/src/H5AbstractDs.h

@@ -7,7 +7,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
@@ -34,49 +34,49 @@ class DataSpace;
     and DataSet.
 */
 class H5_DLLCPP AbstractDs {
-   public:
-        // Gets a copy the datatype of that this abstract dataset uses.
-        // Note that this datatype is a generic one and can only be accessed
-        // via generic member functions, i.e., member functions belong
-        // to DataType.  To get specific datatype, i.e. EnumType, FloatType,
-        // etc..., use the specific functions, that follow, instead.
-        DataType getDataType() const;
+  public:
+    // Gets a copy the datatype of that this abstract dataset uses.
+    // Note that this datatype is a generic one and can only be accessed
+    // via generic member functions, i.e., member functions belong
+    // to DataType.  To get specific datatype, i.e. EnumType, FloatType,
+    // etc..., use the specific functions, that follow, instead.
+    DataType getDataType() const;
 
-        // Gets a copy of the specific datatype of this abstract dataset.
-        ArrayType getArrayType() const;
-        CompType getCompType() const;
-        EnumType getEnumType() const;
-        IntType getIntType() const;
-        FloatType getFloatType() const;
-        StrType getStrType() const;
-        VarLenType getVarLenType() const;
+    // Gets a copy of the specific datatype of this abstract dataset.
+    ArrayType  getArrayType() const;
+    CompType   getCompType() const;
+    EnumType   getEnumType() const;
+    IntType    getIntType() const;
+    FloatType  getFloatType() const;
+    StrType    getStrType() const;
+    VarLenType getVarLenType() const;
 
-        ///\brief Gets the size in memory of this abstract dataset.
-        virtual size_t getInMemDataSize() const = 0;
+    ///\brief Gets the size in memory of this abstract dataset.
+    virtual size_t getInMemDataSize() const = 0;
 
-        ///\brief Gets the dataspace of this abstract dataset - pure virtual.
-        virtual DataSpace getSpace() const = 0;
+    ///\brief Gets the dataspace of this abstract dataset - pure virtual.
+    virtual DataSpace getSpace() const = 0;
 
-        // Gets the class of the datatype that is used by this abstract
-        // dataset.
-        H5T_class_t getTypeClass() const;
+    // Gets the class of the datatype that is used by this abstract
+    // dataset.
+    H5T_class_t getTypeClass() const;
 
-        ///\brief Returns the amount of storage size required - pure virtual.
-        virtual hsize_t getStorageSize() const = 0;
+    ///\brief Returns the amount of storage size required - pure virtual.
+    virtual hsize_t getStorageSize() const = 0;
 
-        // Returns this class name - pure virtual.
-        virtual H5std_string fromClass() const = 0;
+    // Returns this class name - pure virtual.
+    virtual H5std_string fromClass() const = 0;
 
-        // Destructor
-        virtual ~AbstractDs();
+    // Destructor
+    virtual ~AbstractDs();
 
-   protected:
-        // Default constructor
-        AbstractDs();
+  protected:
+    // Default constructor
+    AbstractDs();
 
-   private:
-        // This member function is implemented by DataSet and Attribute - pure virtual.
-        virtual hid_t p_get_type() const = 0;
+  private:
+    // This member function is implemented by DataSet and Attribute - pure virtual.
+    virtual hid_t p_get_type() const = 0;
 
 }; // end of AbstractDs
 } // namespace H5

c++/src/H5Alltypes.h

@@ -7,7 +7,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */

c++/src/H5ArrayType.cpp

@@ -6,7 +6,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
@@ -34,7 +34,9 @@ namespace H5 {
 ///\brief       Default constructor: Creates a stub ArrayType
 // Programmer   Binh-Minh Ribler - May 2004
 //--------------------------------------------------------------------------
-ArrayType::ArrayType() : DataType() {}
+ArrayType::ArrayType() : DataType()
+{
+}
 
 //--------------------------------------------------------------------------
 // Function:    ArrayType overloaded constructor
@@ -43,14 +45,18 @@ ArrayType::ArrayType() : DataType() {}
 ///\exception   H5::DataTypeIException
 // Programmer   Binh-Minh Ribler - May 2004
 //--------------------------------------------------------------------------
-ArrayType::ArrayType(const hid_t existing_id) : DataType(existing_id) {}
+ArrayType::ArrayType(const hid_t existing_id) : DataType(existing_id)
+{
+}
 
 //--------------------------------------------------------------------------
 // Function:    ArrayType copy constructor
 ///\brief       Copy constructor: same HDF5 object as \a original
 // Programmer   Binh-Minh Ribler - May 2004
 //--------------------------------------------------------------------------
-ArrayType::ArrayType(const ArrayType& original) : DataType(original) {}
+ArrayType::ArrayType(const ArrayType &original) : DataType(original)
+{
+}
 
 //--------------------------------------------------------------------------
 // Function:    ArrayType overloaded constructor
@@ -62,7 +68,7 @@ ArrayType::ArrayType(const ArrayType& original) : DataType(original) {}
 ///\exception   H5::DataTypeIException
 // Programmer   Binh-Minh Ribler - May 2004
 //--------------------------------------------------------------------------
-ArrayType::ArrayType(const DataType& base_type, int ndims, const hsize_t* dims) : DataType()
+ArrayType::ArrayType(const DataType &base_type, int ndims, const hsize_t *dims) : DataType()
 {
     // Call C API to create an array data type
     hid_t new_type_id = H5Tarray_create2(base_type.getId(), ndims, dims);
@@ -87,7 +93,7 @@ ArrayType::ArrayType(const DataType& base_type, int ndims, const hsize_t* dims)
 //              improve usability.
 //              -BMR, Dec 2016
 //--------------------------------------------------------------------------
-ArrayType::ArrayType(const H5Location& loc, const char *dtype_name) : DataType()
+ArrayType::ArrayType(const H5Location &loc, const char *dtype_name) : DataType()
 {
     id = p_opentype(loc, dtype_name);
 }
@@ -106,7 +112,7 @@ ArrayType::ArrayType(const H5Location& loc, const char *dtype_name) : DataType()
 //              to improve usability.
 //              -BMR, Dec 2016
 //--------------------------------------------------------------------------
-ArrayType::ArrayType(const H5Location& loc, const H5std_string& dtype_name) : DataType()
+ArrayType::ArrayType(const H5Location &loc, const H5std_string &dtype_name) : DataType()
 {
     id = p_opentype(loc, dtype_name.c_str());
 }
@@ -122,21 +128,21 @@ ArrayType::ArrayType(const H5Location& loc, const H5std_string& dtype_name) : Da
 //              each data member from the rhs object. (Issue HDFFV-9562)
 // Programmer   Binh-Minh Ribler - Mar 2016
 //--------------------------------------------------------------------------
-ArrayType& ArrayType::operator=(const ArrayType& rhs)
+ArrayType &
+ArrayType::operator=(const ArrayType &rhs)
 {
-    if (this != &rhs)
-    {
+    if (this != &rhs) {
         // handling references to this id
         try {
             setId(rhs.id);
             // Note: a = b, so there are two objects with the same hdf5 id
             // that's why incRefCount is needed, and it is called by setId
         }
-        catch (Exception& close_error) {
+        catch (Exception &close_error) {
             throw DataTypeIException(inMemFunc("operator="), close_error.getDetailMsg());
         }
     }
-    return(*this);
+    return (*this);
 }
 
 //--------------------------------------------------------------------------
@@ -147,7 +153,8 @@ ArrayType& ArrayType::operator=(const ArrayType& rhs)
 ///\exception   H5::DataTypeIException
 // Programmer   Binh-Minh Ribler - Aug 2017
 //--------------------------------------------------------------------------
-DataType* ArrayType::decode() const
+DataType *
+ArrayType::decode() const
 {
     hid_t encoded_arrtype_id = H5I_INVALID_HID;
     try {
@@ -158,7 +165,7 @@ DataType* ArrayType::decode() const
     }
     ArrayType *encoded_arrtype = new ArrayType;
     encoded_arrtype->p_setId(encoded_arrtype_id);
-    return(encoded_arrtype);
+    return (encoded_arrtype);
 }
 
 //--------------------------------------------------------------------------
@@ -168,16 +175,16 @@ DataType* ArrayType::decode() const
 ///\exception   H5::DataTypeIException
 // Programmer   Binh-Minh Ribler - May 2004
 //--------------------------------------------------------------------------
-int ArrayType::getArrayNDims() const
+int
+ArrayType::getArrayNDims() const
 {
     // Get the rank of the array type specified by id from the C API
     int ndims = H5Tget_array_ndims(id);
-    if (ndims < 0)
-    {
+    if (ndims < 0) {
         throw DataTypeIException("ArrayType::getArrayNDims", "H5Tget_array_ndims failed");
     }
 
-    return(ndims);
+    return (ndims);
 }
 
 //--------------------------------------------------------------------------
@@ -188,7 +195,8 @@ int ArrayType::getArrayNDims() const
 ///\exception   H5::DataTypeIException
 // Programmer   Binh-Minh Ribler - May 2004
 //--------------------------------------------------------------------------
-int ArrayType::getArrayDims(hsize_t* dims) const
+int
+ArrayType::getArrayDims(hsize_t *dims) const
 {
     // Get the dimensions
     int ndims = H5Tget_array_dims2(id, dims);
@@ -196,7 +204,7 @@ int ArrayType::getArrayDims(hsize_t* dims) const
         throw DataTypeIException("ArrayType::getArrayDims", "H5Tget_array_dims2 failed");
 
     // Return the number of dimensions
-    return(ndims);
+    return (ndims);
 }
 
 //--------------------------------------------------------------------------
@@ -204,6 +212,8 @@ int ArrayType::getArrayDims(hsize_t* dims) const
 ///\brief       Properly terminates access to this array datatype.
 // Programmer   Binh-Minh Ribler - May 2004
 //--------------------------------------------------------------------------
-ArrayType::~ArrayType() {}
+ArrayType::~ArrayType()
+{
+}
 
-} // end namespace
+} // namespace H5

c++/src/H5ArrayType.h

@@ -7,7 +7,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
@@ -23,44 +23,48 @@ namespace H5 {
 */
 // Inheritance: DataType -> H5Object -> H5Location -> IdComponent
 class H5_DLLCPP ArrayType : public DataType {
-   public:
-        // Constructor that creates a new array data type based on the
-        // specified base type.
-        ArrayType(const DataType& base_type, int ndims, const hsize_t* dims);
+  public:
+    // Constructor that creates a new array data type based on the
+    // specified base type.
+    ArrayType(const DataType &base_type, int ndims, const hsize_t *dims);
 
-        // Assignment operator
-        ArrayType& operator=(const ArrayType& rhs);
+    // Assignment operator
+    ArrayType &operator=(const ArrayType &rhs);
 
-        // Constructors that open an array datatype, given a location.
-        ArrayType(const H5Location& loc, const char* name);
-        ArrayType(const H5Location& loc, const H5std_string& name);
+    // Constructors that open an array datatype, given a location.
+    ArrayType(const H5Location &loc, const char *name);
+    ArrayType(const H5Location &loc, const H5std_string &name);
 
-        // Returns an ArrayType object via DataType* by decoding the
-        // binary object description of this type.
-        virtual DataType* decode() const;
+    // Returns an ArrayType object via DataType* by decoding the
+    // binary object description of this type.
+    virtual DataType *decode() const;
 
-        // Returns the number of dimensions of this array datatype.
-        int getArrayNDims() const;
-        //int getArrayNDims(); // removed 1.8.18 and 1.10.1
+    // Returns the number of dimensions of this array datatype.
+    int getArrayNDims() const;
+    // int getArrayNDims(); // removed 1.8.18 and 1.10.1
 
-        // Returns the sizes of dimensions of this array datatype.
-        int getArrayDims(hsize_t* dims) const;
-        //int getArrayDims(hsize_t* dims); // removed 1.8.18 and 1.10.1
+    // Returns the sizes of dimensions of this array datatype.
+    int getArrayDims(hsize_t *dims) const;
+    // int getArrayDims(hsize_t* dims); // removed 1.8.18 and 1.10.1
 
-        ///\brief Returns this class name.
-        virtual H5std_string fromClass () const { return("ArrayType"); }
+    ///\brief Returns this class name.
+    virtual H5std_string
+    fromClass() const
+    {
+        return ("ArrayType");
+    }
 
-        // Copy constructor: same as the original ArrayType.
-        ArrayType(const ArrayType& original);
+    // Copy constructor: same as the original ArrayType.
+    ArrayType(const ArrayType &original);
 
-        // Constructor that takes an existing id
-        ArrayType(const hid_t existing_id);
+    // Constructor that takes an existing id
+    ArrayType(const hid_t existing_id);
 
-        // Noop destructor
-        virtual ~ArrayType();
+    // Noop destructor
+    virtual ~ArrayType();
 
-        // Default constructor
-        ArrayType();
+    // Default constructor
+    ArrayType();
 
 }; // end of ArrayType
 } // namespace H5

c++/src/H5AtomType.cpp

@@ -6,7 +6,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
@@ -35,7 +35,9 @@ namespace H5 {
 // Purpose      Default constructor: creates a stub atomic datatype.
 // Programmer   Binh-Minh Ribler - 2000
 //--------------------------------------------------------------------------
-AtomType::AtomType() : DataType() {}
+AtomType::AtomType() : DataType()
+{
+}
 
 //--------------------------------------------------------------------------
 // Function:    AtomType overloaded constructor [protected]
@@ -44,14 +46,18 @@ AtomType::AtomType() : DataType() {}
 // Exception    H5::DataTypeIException
 // Programmer   Binh-Minh Ribler - 2000
 //--------------------------------------------------------------------------
-AtomType::AtomType(const hid_t existing_id) : DataType(existing_id) {}
+AtomType::AtomType(const hid_t existing_id) : DataType(existing_id)
+{
+}
 
 //--------------------------------------------------------------------------
 // Function:    AtomType copy constructor
 ///\brief       Copy constructor: same HDF5 object as \a original
 // Programmer   Binh-Minh Ribler - 2000
 //--------------------------------------------------------------------------
-AtomType::AtomType(const AtomType& original) : DataType(original) {}
+AtomType::AtomType(const AtomType &original) : DataType(original)
+{
+}
 #endif // DOXYGEN_SHOULD_SKIP_THIS
 
 //--------------------------------------------------------------------------
@@ -61,12 +67,12 @@ AtomType::AtomType(const AtomType& original) : DataType(original) {}
 ///\exception   H5::DataTypeIException
 // Programmer   Binh-Minh Ribler - 2000
 //--------------------------------------------------------------------------
-void AtomType::setSize(size_t size) const
+void
+AtomType::setSize(size_t size) const
 {
     // Call C routine H5Tset_size to set the total size
     herr_t ret_value = H5Tset_size(id, size);
-    if (ret_value < 0)
-    {
+    if (ret_value < 0) {
         throw DataTypeIException(inMemFunc("setSize"), "H5Tset_size failed");
     }
 }
@@ -81,18 +87,17 @@ void AtomType::setSize(size_t size) const
 ///\exception   H5::DataTypeIException
 // Programmer   Binh-Minh Ribler - Mar, 2005
 //--------------------------------------------------------------------------
-H5T_order_t AtomType::getOrder() const
+H5T_order_t
+AtomType::getOrder() const
 {
     // Call C routine to get the byte ordering
     H5T_order_t type_order = H5Tget_order(id);
 
     // return a byte order constant if successful
-    if (type_order == H5T_ORDER_ERROR)
-    {
-        throw DataTypeIException(inMemFunc("getOrder"),
-             "H5Tget_order returns H5T_ORDER_ERROR");
+    if (type_order == H5T_ORDER_ERROR) {
+        throw DataTypeIException(inMemFunc("getOrder"), "H5Tget_order returns H5T_ORDER_ERROR");
     }
-   return(type_order);
+    return (type_order);
 }
 
 //--------------------------------------------------------------------------
@@ -112,7 +117,8 @@ H5T_order_t AtomType::getOrder() const
 ///\exception   H5::DataTypeIException
 // Programmer   Binh-Minh Ribler - 2000
 //--------------------------------------------------------------------------
-H5T_order_t AtomType::getOrder(H5std_string& order_string) const
+H5T_order_t
+AtomType::getOrder(H5std_string &order_string) const
 {
     // Call the overloaded to get the type order without text
     H5T_order_t type_order = getOrder();
@@ -124,7 +130,7 @@ H5T_order_t AtomType::getOrder(H5std_string& order_string) const
         order_string = "Big endian byte ordering (1)";
     else if (type_order == H5T_ORDER_VAX)
         order_string = "VAX mixed byte ordering (2)";
-    return(type_order);
+    return (type_order);
 }
 
 //--------------------------------------------------------------------------
@@ -137,12 +143,12 @@ H5T_order_t AtomType::getOrder(H5std_string& order_string) const
 ///\exception   H5::DataTypeIException
 // Programmer   Binh-Minh Ribler - 2000
 //--------------------------------------------------------------------------
-void AtomType::setOrder(H5T_order_t order) const
+void
+AtomType::setOrder(H5T_order_t order) const
 {
     // Call C routine to set the byte ordering
     herr_t ret_value = H5Tset_order(id, order);
-    if (ret_value < 0)
-    {
+    if (ret_value < 0) {
         throw DataTypeIException(inMemFunc("setOrder"), "H5Tset_order failed");
     }
 }
@@ -158,17 +164,17 @@ void AtomType::setOrder(H5T_order_t order) const
 ///             value returned by \c DataType::getSize().
 // Programmer   Binh-Minh Ribler - 2000
 //--------------------------------------------------------------------------
-size_t AtomType::getPrecision() const
+size_t
+AtomType::getPrecision() const
 {
-    size_t num_signi_bits = H5Tget_precision(id);  // C routine
+    size_t num_signi_bits = H5Tget_precision(id); // C routine
 
     // returns number of significant bits if successful
-    if (num_signi_bits == 0)
-    {
+    if (num_signi_bits == 0) {
         throw DataTypeIException(inMemFunc("getPrecision"),
-             "H5Tget_precision returns invalid number of significant bits");
+                                 "H5Tget_precision returns invalid number of significant bits");
     }
-    return(num_signi_bits);
+    return (num_signi_bits);
 }
 
 //--------------------------------------------------------------------------
@@ -181,12 +187,12 @@ size_t AtomType::getPrecision() const
 ///             the HDF5 C Reference Manual.
 // Programmer   Binh-Minh Ribler - 2000
 //--------------------------------------------------------------------------
-void AtomType::setPrecision(size_t precision) const
+void
+AtomType::setPrecision(size_t precision) const
 {
     // Call C routine to set the datatype precision
     herr_t ret_value = H5Tset_precision(id, precision);
-    if (ret_value < 0)
-    {
+    if (ret_value < 0) {
         throw DataTypeIException(inMemFunc("setPrecision"), "H5Tset_precision failed");
     }
 }
@@ -205,17 +211,16 @@ void AtomType::setPrecision(size_t precision) const
 //                  - return type changed from size_t to int
 //                  - offset = -1 when failure occurs vs. 0
 //--------------------------------------------------------------------------
-int AtomType::getOffset() const
+int
+AtomType::getOffset() const
 {
-    int offset = H5Tget_offset(id);  // C routine
+    int offset = H5Tget_offset(id); // C routine
 
     // returns a non-negative offset value if successful
-    if (offset == -1)
-    {
-        throw DataTypeIException(inMemFunc("getOffset"),
-             "H5Tget_offset returns a negative offset value");
+    if (offset == -1) {
+        throw DataTypeIException(inMemFunc("getOffset"), "H5Tget_offset returns a negative offset value");
     }
-    return(offset);
+    return (offset);
 }
 
 //--------------------------------------------------------------------------
@@ -228,12 +233,12 @@ int AtomType::getOffset() const
 ///             the HDF5 C Reference Manual.
 // Programmer   Binh-Minh Ribler - 2000
 //--------------------------------------------------------------------------
-void AtomType::setOffset(size_t offset) const
+void
+AtomType::setOffset(size_t offset) const
 {
     // Call C routine to set the bit offset
     herr_t ret_value = H5Tset_offset(id, offset);
-    if (ret_value < 0)
-    {
+    if (ret_value < 0) {
         throw DataTypeIException(inMemFunc("setOffset"), "H5Tset_offset failed");
     }
 }
@@ -252,12 +257,12 @@ void AtomType::setOffset(size_t offset) const
 ///             \li \c H5T_PAD_BACKGROUND (2) - Leave background alone.
 // Programmer   Binh-Minh Ribler - 2000
 //--------------------------------------------------------------------------
-void AtomType::getPad(H5T_pad_t& lsb, H5T_pad_t& msb) const
+void
+AtomType::getPad(H5T_pad_t &lsb, H5T_pad_t &msb) const
 {
     // Call C routine to get the padding type
     herr_t ret_value = H5Tget_pad(id, &lsb, &msb);
-    if (ret_value < 0)
-    {
+    if (ret_value < 0) {
         throw DataTypeIException(inMemFunc("getPad"), "H5Tget_pad failed");
     }
 }
@@ -275,12 +280,12 @@ void AtomType::getPad(H5T_pad_t& lsb, H5T_pad_t& msb) const
 ///             \li \c H5T_PAD_BACKGROUND (2) - Leave background alone.
 // Programmer   Binh-Minh Ribler - 2000
 //--------------------------------------------------------------------------
-void AtomType::setPad(H5T_pad_t lsb, H5T_pad_t msb) const
+void
+AtomType::setPad(H5T_pad_t lsb, H5T_pad_t msb) const
 {
     // Call C routine to set the padding type
     herr_t ret_value = H5Tset_pad(id, lsb, msb);
-    if (ret_value < 0)
-    {
+    if (ret_value < 0) {
         throw DataTypeIException(inMemFunc("setPad"), "H5Tset_pad failed");
     }
 }
@@ -291,7 +296,9 @@ void AtomType::setPad(H5T_pad_t lsb, H5T_pad_t msb) const
 ///\brief       Noop destructor.
 // Programmer   Binh-Minh Ribler - 2000
 //--------------------------------------------------------------------------
-AtomType::~AtomType() {}
+AtomType::~AtomType()
+{
+}
 #endif // DOXYGEN_SHOULD_SKIP_THIS
 
-} // end namespace
+} // namespace H5

c++/src/H5AtomType.h

@@ -7,7 +7,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
@@ -26,54 +26,58 @@ namespace H5 {
 */
 // Inheritance: DataType -> H5Object -> H5Location -> IdComponent
 class H5_DLLCPP AtomType : public DataType {
-   public:
-        // Returns the byte order of an atomic datatype.
-        H5T_order_t getOrder() const;
-        H5T_order_t getOrder(H5std_string& order_string) const;
+  public:
+    // Returns the byte order of an atomic datatype.
+    H5T_order_t getOrder() const;
+    H5T_order_t getOrder(H5std_string &order_string) const;
 
-        // Sets the byte ordering of an atomic datatype.
-        void setOrder(H5T_order_t order) const;
+    // Sets the byte ordering of an atomic datatype.
+    void setOrder(H5T_order_t order) const;
 
-        // Retrieves the bit offset of the first significant bit.
-        // 12/05/00 - changed return type to int from size_t - C API
-        int getOffset() const;
+    // Retrieves the bit offset of the first significant bit.
+    // 12/05/00 - changed return type to int from size_t - C API
+    int getOffset() const;
 
-        // Sets the bit offset of the first significant bit.
-        void setOffset(size_t offset) const;
+    // Sets the bit offset of the first significant bit.
+    void setOffset(size_t offset) const;
 
-        // Retrieves the padding type of the least and most-significant bit padding.
-        void getPad(H5T_pad_t& lsb, H5T_pad_t& msb) const;
+    // Retrieves the padding type of the least and most-significant bit padding.
+    void getPad(H5T_pad_t &lsb, H5T_pad_t &msb) const;
 
-        // Sets the least and most-significant bits padding types
-        void setPad(H5T_pad_t lsb, H5T_pad_t msb) const;
+    // Sets the least and most-significant bits padding types
+    void setPad(H5T_pad_t lsb, H5T_pad_t msb) const;
 
-        // Returns the precision of an atomic datatype.
-        size_t getPrecision() const;
+    // Returns the precision of an atomic datatype.
+    size_t getPrecision() const;
 
-        // Sets the precision of an atomic datatype.
-        void setPrecision(size_t precision) const;
+    // Sets the precision of an atomic datatype.
+    void setPrecision(size_t precision) const;
 
-        // Sets the total size for an atomic datatype.
-        void setSize(size_t size) const;
+    // Sets the total size for an atomic datatype.
+    void setSize(size_t size) const;
 
-        ///\brief Returns this class name.
-        virtual H5std_string fromClass () const { return("AtomType"); }
+    ///\brief Returns this class name.
+    virtual H5std_string
+    fromClass() const
+    {
+        return ("AtomType");
+    }
 
 #ifndef DOXYGEN_SHOULD_SKIP_THIS
-        // Copy constructor: same as the original AtomType.
-        AtomType(const AtomType& original);
+    // Copy constructor: same as the original AtomType.
+    AtomType(const AtomType &original);
 
-        // Noop destructor
-        virtual ~AtomType();
+    // Noop destructor
+    virtual ~AtomType();
 #endif // DOXYGEN_SHOULD_SKIP_THIS
 
-   protected:
+  protected:
 #ifndef DOXYGEN_SHOULD_SKIP_THIS
-        // Default constructor
-        AtomType();
+    // Default constructor
+    AtomType();
 
-        // Constructor that takes an existing id
-        AtomType(const hid_t existing_id);
+    // Constructor that takes an existing id
+    AtomType(const hid_t existing_id);
 #endif // DOXYGEN_SHOULD_SKIP_THIS
 
 }; // end of AtomType

c++/src/H5Attribute.cpp

@@ -6,7 +6,7 @@
  * This file is part of HDF5.  The full HDF5 copyright notice, including     *
  * terms governing use, modification, and redistribution, is contained in    *
  * the COPYING file, which can be found at the root of the source code       *
- * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
+ * distribution tree, or in https://www.hdfgroup.org/licenses.               *
  * If you do not have access to either file, you may request a copy from     *
  * help@hdfgroup.org.                                                        *
  * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
@@ -18,7 +18,7 @@
 #endif
 #include <string>
 
-#include "H5private.h"             // for HDfree
+#include "H5private.h" // for HDfree
 #include "H5Include.h"
 #include "H5Exception.h"
 #include "H5IdComponent.h"
@@ -41,14 +41,16 @@ namespace H5 {
 using std::cerr;
 using std::endl;
 
-class H5_DLLCPP H5Object;  // forward declaration for UserData4Aiterate
+class H5_DLLCPP H5Object; // forward declaration for UserData4Aiterate
 
 //--------------------------------------------------------------------------
 // Function:    Attribute default constructor
 ///\brief       Default constructor: Creates a stub attribute
 // Programmer   Binh-Minh Ribler - May, 2004
 //--------------------------------------------------------------------------
-Attribute::Attribute() : AbstractDs(), H5Location(), id(H5I_INVALID_HID) {}
+Attribute::Attribute() : AbstractDs(), H5Location(), id(H5I_INVALID_HID)
+{
+}
 
 //--------------------------------------------------------------------------
 // Function:    Attribute copy constructor
@@ -56,7 +58,7 @@ Attribute::Attribute() : AbstractDs(), H5Location(), id(H5I_INVALID_HID) {}
 ///\param       original  - IN: Original Attribute object to copy
 // Programmer   Binh-Minh Ribler - 2000
 //--------------------------------------------------------------------------
-Attribute::Attribute(const Attribute& original) : AbstractDs(), H5Location(), id(original.id)
+Attribute::Attribute(const Attribute &original) : AbstractDs(), H5Location(), id(original.id)
 {
     incRefCount(); // increment number of references to this id
 }
@@ -82,11 +84,11 @@ Attribute::Attribute(const hid_t existing_id) : AbstractDs(), H5Location(), id(e
 ///\exception   H5::AttributeIException
 // Programmer   Binh-Minh Ribler - 2000
 //--------------------------------------------------------------------------
-void Attribute::write(const DataType& mem_type, const void *buf) const
+void
+Attribute::write(const DataType &mem_type, const void *buf) const
 {
-   herr_t ret_value = H5Awrite(id, mem_type.getId(), buf);
-   if (ret_value < 0)
-    {
+    herr_t ret_value = H5Awrite(id, mem_type.getId(), buf);
+    if (ret_value < 0) {
         throw AttributeIException("Attribute::write", "H5Awrite failed");
     }
 }
@@ -100,32 +102,29 @@ void Attribute::write(const DataType& mem_type, const void *buf) const
 ///\exception   H5::AttributeIException
 // Programmer   Binh-Minh Ribler - Apr, 2003
 //--------------------------------------------------------------------------
-void Attribute::write(const DataType& mem_type, const H5std_string& strg) const
+void
+Attribute::write(const DataType &mem_type, const H5std_string &strg) const
 {
     // Check if this attribute has variable-len string or fixed-len string and
     // proceed appropriately.
     htri_t is_variable_len = H5Tis_variable_str(mem_type.getId());
-    if (is_variable_len < 0)
-    {
+    if (is_variable_len < 0) {
         throw AttributeIException("Attribute::write", "H5Tis_variable_str failed");
     }
     // Convert string to C-string
-    const char* strg_C;
-    strg_C = strg.c_str();  // strg_C refers to the contents of strg as a C-str
+    const char *strg_C;
+    strg_C           = strg.c_str(); // strg_C refers to the contents of strg as a C-str
     herr_t ret_value = 0;
 
     // Pass string in differently depends on variable or fixed length
-    if (!is_variable_len)
-    {
+    if (!is_variable_len) {
         ret_value = H5Awrite(id, mem_type.getId(), strg_C);
     }
-    else
-    {
+    else {
         // passing third argument by address
         ret_value = H5Awrite(id, mem_type.getId(), &strg_C);
     }
-    if (ret_value < 0)
-    {
+    if (ret_value < 0) {
         throw AttributeIException("Attribute::write", "H5Awrite failed");
     }
 }
@@ -138,11 +137,11 @@ void Attribute::write(const DataType& mem_type, const H5std_string& strg) const
 ///\exception   H5::AttributeIException
 // Programmer   Binh-Minh Ribler - 2000
 //--------------------------------------------------------------------------
-void Attribute::read(const DataType& mem_type, void *buf) const
+void
+Attribute::read(const DataType &mem_type, void *buf) const
 {
-   herr_t ret_value = H5Aread(id, mem_type.getId(), buf);
-   if (ret_value < 0)
-    {
+    herr_t ret_value = H5Aread(id, mem_type.getId(), buf);
+    if (ret_value < 0) {
         throw AttributeIException("Attribute::read", "H5Aread failed");
     }
 }
@@ -167,22 +166,21 @@ void Attribute::read(const DataType& mem_type, void *buf) const
 //              variable-len string data: p_read_fixed_len and
 //              p_read_variable_len.  This should improve readability. -BMR
 //--------------------------------------------------------------------------
-void Attribute::read(const DataType& mem_type, H5std_string& strg) const
+void
+Attribute::read(const DataType &mem_type, H5std_string &strg) const
 {
     // Check if this attribute has variable-len string or fixed-len string and
     // proceed appropriately.
     htri_t is_variable_len = H5Tis_variable_str(mem_type.getId());
-    if (is_variable_len < 0)
-    {
+    if (is_variable_len < 0) {
         throw AttributeIException("Attribute::read", "H5Tis_variable_str failed");
     }
 
-    if (!is_variable_len)       // only allocate for fixed-len string
+    if (!is_variable_len) // only allocate for fixed-len string
     {
         p_read_fixed_len(mem_type, strg);
     }
-    else
-    {
+    else {
         p_read_variable_len(mem_type, strg);
     }
 }
@@ -194,62 +192,55 @@ void Attribute::read(const DataType& mem_type, H5std_string& strg) const
 ///\exception   H5::AttributeIException
 // Programmer   Binh-Minh Ribler - Apr 2009
 //--------------------------------------------------------------------------
-size_t Attribute::getInMemDataSize() const
+size_t
+Attribute::getInMemDataSize() const
 {
     const char *func = "Attribute::getInMemDataSize";
 
     // Get the data type of this attribute
     hid_t mem_type_id = H5Aget_type(id);
-    if (mem_type_id < 0)
-    {
+    if (mem_type_id < 0) {
         throw AttributeIException(func, "H5Aget_type failed");
     }
 
     // Get the data type's size by first getting its native type then getting
     // the native type's size.
     hid_t native_type = H5Tget_native_type(mem_type_id, H5T_DIR_DEFAULT);
-    if (native_type < 0)
-    {
+    if (native_type < 0) {
         throw AttributeIException(func, "H5Tget_native_type failed");
     }
     size_t type_size = H5Tget_size(native_type);
-    if (type_size == 0)
-    {
+    if (type_size == 0) {
         throw AttributeIException(func, "H5Tget_size failed");
     }
 
     // Close the native type and the datatype of this attribute.
-    if (H5Tclose(native_type) < 0)
-    {
+    if (H5Tclose(native_type) < 0) {
         throw DataSetIException(func, "H5Tclose(native_type) failed");
     }
-    if (H5Tclose(mem_type_id) < 0)
-    {
+    if (H5Tclose(mem_type_id) < 0) {
         throw DataSetIException(func, "H5Tclose(mem_type_id) failed");
     }
 
     // Get number of elements of the attribute by first getting its dataspace
     // then getting the number of elements in the dataspace
     hid_t space_id = H5Aget_space(id);
-    if (space_id < 0)
-    {
+    if (space_id < 0) {
         throw AttributeIException(func, "H5Aget_space failed");
     }
     hssize_t num_elements = H5Sget_simple_extent_npoints(space_id);
-    if (num_elements < 0)
-    {
+    if (num_elements < 0) {
         throw AttributeIException(func, "H5Sget_simple_extent_npoints failed");
     }
 
     // Close the dataspace
-    if (H5Sclose(space_id) < 0)
-    {
+    if (H5Sclose(space_id) < 0) {
         throw DataSetIException(func, "H5Sclose failed");
     }
 
     // Calculate and return the size of the data
     size_t data_size = type_size * num_elements;
-    return(data_size);
+    return (data_size);
 }
 
 //--------------------------------------------------------------------------
@@ -259,20 +250,19 @@ size_t Attribute::getInMemDataSize() const
 ///\exception   H5::AttributeIException
 // Programmer   Binh-Minh Ribler - 2000
 //--------------------------------------------------------------------------
-DataSpace Attribute::getSpace() const
+DataSpace
+Attribute::getSpace() const
 {
-   // Calls C function H5Aget_space to get the id of the dataspace
-   hid_t dataspace_id = H5Aget_space(id);
+    // Calls C function H5Aget_space to get the id of the dataspace
+    hid_t dataspace_id = H5Aget_space(id);
 
-   // If the dataspace id is valid, create and return the DataSpace object
-   if (dataspace_id > 0)
-    {
+    // If the dataspace id is valid, create and return the DataSpace object
+    if (dataspace_id > 0) {
         DataSpace dataspace;
         f_DataSpace_setId(&dataspace, dataspace_id);
-        return(dataspace);
+        return (dataspace);
     }
-   else
-    {
+    else {
         throw AttributeIException("Attribute::getSpace", "H5Aget_space failed");
     }
 }
@@ -294,22 +284,21 @@ DataSpace Attribute::getSpace() const
 ///             first argument and ignore the second argument.
 // Programmer   Binh-Minh Ribler - Mar, 2014
 //--------------------------------------------------------------------------
-ssize_t Attribute::getName(char* attr_name, size_t buf_size) const
+ssize_t
+Attribute::getName(char *attr_name, size_t buf_size) const
 {
     // H5Aget_name will get buf_size-1 chars of the name to null terminate it
     ssize_t name_size = H5Aget_name(id, buf_size, attr_name);
 
     // If H5Aget_name returns a negative value, raise an exception
-    if (name_size < 0)
-    {
+    if (name_size < 0) {
         throw AttributeIException("Attribute::getName", "H5Aget_name failed");
     }
-    else if (name_size == 0)
-    {
+    else if (name_size == 0) {
         throw AttributeIException("Attribute::getName", "Attribute must have a name, name length is 0");
     }
     // Return length of the name
-    return(name_size);
+    return (name_size);
 }
 
 //--------------------------------------------------------------------------
@@ -322,7 +311,8 @@ ssize_t Attribute::getName(char* attr_name, size_t buf_size) const
 //      Mar 2014 - BMR
 //              Revised to use the modified getName() above
 //--------------------------------------------------------------------------
-H5std_string Attribute::getName() const
+H5std_string
+Attribute::getName() const
 {
     H5std_string attr_name(""); // attribute name to return
 
@@ -330,32 +320,28 @@ H5std_string Attribute::getName() const
     ssize_t name_size = H5Aget_name(id, static_cast<size_t>(0), NULL);
 
     // If H5Aget_name failed, throw exception
-    if (name_size < 0)
-    {
+    if (name_size < 0) {
         throw AttributeIException("Attribute::getName", "H5Aget_name failed");
     }
-    else if (name_size == 0)
-    {
+    else if (name_size == 0) {
         throw AttributeIException("Attribute::getName", "Attribute must have a name, name length is 0");
     }
     // Attribute's name exists, retrieve it
-    else if (name_size > 0)
-    {
-        char* name_C = new char[name_size+1];  // temporary C-string
-        HDmemset(name_C, 0, name_size+1); // clear buffer
+    else if (name_size > 0) {
+        char *name_C = new char[name_size + 1]; // temporary C-string
+        HDmemset(name_C, 0, name_size + 1);     // clear buffer
 
         // Use overloaded function
-        name_size = getName(name_C, name_size+1);
+        name_size = getName(name_C, name_size + 1);
 
         // Convert the C attribute name to return
         attr_name = name_C;
 
         // Clean up resource
-        delete []name_C;
-
+        delete[] name_C;
     }
     // Return attribute's name
-    return(attr_name);
+    return (attr_name);
 }
 
 //--------------------------------------------------------------------------
@@ -371,14 +357,15 @@ H5std_string Attribute::getName() const
 //      Mar 2014 - BMR
 //              Revised to use the new getName() below
 //--------------------------------------------------------------------------
-H5std_string Attribute::getName(size_t len) const
+H5std_string
+Attribute::getName(size_t len) const
 {
     H5std_string attr_name;
-    ssize_t name_size = getName(attr_name, len);
+    ssize_t      name_size = getName(attr_name, len);
     if (name_size < 0)
-        return("");
+        return ("");
     else
-        return(attr_name);
+        return (attr_name);
 }
 
 //--------------------------------------------------------------------------
@@ -398,35 +385,34 @@ H5std_string Attribute::getName(size_t len) const
 //              Added to replace getName(size_t, H5std_string&) so that it'll
 //              allow the argument "len" to be skipped.
 //--------------------------------------------------------------------------
-ssize_t Attribute::getName(H5std_string& attr_name, size_t len) const
+ssize_t
+Attribute::getName(H5std_string &attr_name, size_t len) const
 {
     ssize_t name_size = 0;
 
     // If no length is provided, get the entire attribute name
-    if (len == 0)
-    {
+    if (len == 0) {
         attr_name = getName();
         name_size = attr_name.length();
     }
     // If length is provided, get that number of characters in name
-    else
-    {
-        char* name_C = new char[len+1];  // temporary C-string
-        HDmemset(name_C, 0, len+1); // clear buffer
+    else {
+        char *name_C = new char[len + 1]; // temporary C-string
+        HDmemset(name_C, 0, len + 1);     // clear buffer
 
         // Use overloaded function
-        name_size = getName(name_C, len+1);
+        name_size = getName(name_C, len + 1);
 
         // Convert the C attribute name to return
         attr_name = name_C;
 
         // Clean up resource
-        delete []name_C;
+        delete[] name_C;
     }
     // Otherwise, keep attr_name intact
 
     // Return name size
-    return(name_size);
+    return (name_size);
 }
 
 //--------------------------------------------------------------------------
@@ -444,7 +430,7 @@ ssize_t Attribute::getName(H5std_string& attr_name, size_t len) const
 //              Removed from documentation. -BMR, 2016/03/07 1.8.17 and 1.10.0
 //              Removed from code. -BMR, 2016/08/11 1.8.18 and 1.10.1
 //--------------------------------------------------------------------------
-//ssize_t Attribute::getName(size_t len, H5std_string& attr_name) const
+// ssize_t Attribute::getName(size_t len, H5std_string& attr_name) const
 //{
 //    return (getName(attr_name, len));
 //}
@@ -458,10 +444,11 @@ ssize_t Attribute::getName(H5std_string& attr_name, size_t len) const
 //              function should have no failure. (from SLU)
 // Programmer   Binh-Minh Ribler - Mar, 2005
 //--------------------------------------------------------------------------
-hsize_t Attribute::getStorageSize() const
+hsize_t
+Attribute::getStorageSize() const
 {
-   hsize_t storage_size = H5Aget_storage_size(id);
-   return (storage_size);
+    hsize_t storage_size = H5Aget_storage_size(id);
+    return (storage_size);
 }
 
 //--------------------------------------------------------------------------
@@ -480,9 +467,10 @@ hsize_t Attribute::getStorageSize() const
 //              an attribute id can be used to specify a location in HDF5
 //              library.
 //--------------------------------------------------------------------------
-hid_t Attribute::getId() const
+hid_t
+Attribute::getId() const
 {
-   return(id);
+    return (id);
 }
 
 //--------------------------------------------------------------------------
@@ -494,13 +482,13 @@ hid_t Attribute::getId() const
 //              This private function is used in AbstractDs.
 // Programmer   Binh-Minh Ribler - 2000
 //--------------------------------------------------------------------------
-hid_t Attribute::p_get_type() const
+hid_t
+Attribute::p_get_type() const
 {
     hid_t type_id = H5Aget_type(id);
     if (type_id > 0)
-        return(type_id);
-    else
-    {
+        return (type_id);
+    else {
         throw AttributeIException("", "H5Aget_type failed");
     }
 }
@@ -517,7 +505,8 @@ hid_t Attribute::p_get_type() const
 //              Separated the fixed length case from the original
 //              Attribute::read
 //--------------------------------------------------------------------------
-void Attribute::p_read_fixed_len(const DataType& mem_type, H5std_string& strg) const
+void
+Attribute::p_read_fixed_len(const DataType &mem_type, H5std_string &strg) const
 {
     // Only allocate for fixed-len string.
 
@@ -525,19 +514,17 @@ void Attribute::p_read_fixed_len(const DataType& mem_type, H5std_string& strg) c
     size_t attr_size = getInMemDataSize();
 
     // If there is data, allocate buffer and read it.
-    if (attr_size > 0)
-    {
-        char *strg_C = new char[attr_size+1];
+    if (attr_size > 0) {
+        char * strg_C    = new char[attr_size + 1];
         herr_t ret_value = H5Aread(id, mem_type.getId(), strg_C);
-        if (ret_value < 0)
-        {
-            delete []strg_C;        // de-allocate for fixed-len string
+        if (ret_value < 0) {
+            delete[] strg_C; // de-allocate for fixed-len string
             throw AttributeIException("Attribute::read", "H5Aread failed");
         }
         // Get string from the C char* and release resource allocated locally
         strg_C[attr_size] = '\0';
-        strg = strg_C;
-        delete []strg_C;
+        strg              = strg_C;
+        delete[] strg_C;
     }
 }
 
@@ -553,7 +540,8 @@ void Attribute::p_read_fixed_len(const DataType& mem_type, H5std_string& strg) c
 //              Separated the variable length case from the original
 //              Attribute::read. -BMR
 //--------------------------------------------------------------------------
-void Attribute::p_read_variable_len(const DataType& mem_type, H5std_string& strg) const
+void
+Attribute::p_read_variable_len(const DataType &mem_type, H5std_string &strg) const
 {
     // Prepare and call C API to read attribute.
     char *strg_C;
@@ -561,8 +549,7 @@ void Attribute::p_read_variable_len(const DataType& mem_type, H5std_string& strg
     // Read attribute, no allocation for variable-len string; C library will
     herr_t ret_value = H5Aread(id, mem_type.getId(), &strg_C);
 
-    if (ret_value < 0)
-    {
+    if (ret_value < 0) {
         throw AttributeIException("Attribute::read", "H5Aread failed");
     }
 
@@ -584,13 +571,14 @@ void Attribute::p_read_variable_len(const DataType& mem_type, H5std_string& strg
 //              Then the object's id is reset to the new id.
 // Programmer   Binh-Minh Ribler - 2000
 //--------------------------------------------------------------------------
-void Attribute::p_setId(const hid_t new_id)
+void
+Attribute::p_setId(const hid_t new_id)
 {
     // handling references to this old id
     try {
         close();
     }
-    catch (Exception& close_error) {
+    catch (Exception &close_error) {
         throw AttributeIException("Attribute::p_setId", close_error.getDetailMsg());
     }
     // reset object's id to the given id
@@ -605,13 +593,12 @@ void Attribute::p_setId(const hid_t new_id)
 ///\exception   H5::AttributeIException
 // Programmer   Binh-Minh Ribler - Mar 9, 2005
 //--------------------------------------------------------------------------
-void Attribute::close()
+void
+Attribute::close()
 {
-    if (p_valid_id(id))
-    {
+    if (p_valid_id(id)) {
         herr_t ret_value = H5Aclose(id);
-        if (ret_value < 0)
-        {
+        if (ret_value < 0) {
             throw AttributeIException("Attribute::close", "H5Aclose failed");
         }
         // reset the id
@@ -634,9 +621,9 @@ Attribute::~Attribute()
     try {
         close();
     }
-    catch (Exception& close_error) {
+    catch (Exception &close_error) {
         cerr << "Attribute::~Attribute - " << close_error.getDetailMsg() << endl;
     }
 }
 
-} // end namespace
+} // namespace H5