philipp/hdf5
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity
19,026 Commits 73 Branches 125 Tags
fdbbe61bcf2c5bcbea8a4e08bd6ce8c62f7b43bc
Commit Graph

19026 Commits

This Branch
This Branch
All Branches
Author SHA1 Message Date
Dana Robinson
fdbbe61bcf Added some initial group construction code. 2019-01-06 10:17:49 -08:00
Dana Robinson
10495f34f8 Added libuuid for generating UUIDs. 2019-01-06 09:45:46 -08:00
Dana Robinson
c1f1c89f5a Updated the notes in BRANCH.md. 2019-01-06 08:57:40 -08:00
Dana Robinson
1b90939dab Added initial JSON string handling to the connector. 2019-01-06 08:43:35 -08:00
Dana Robinson
db9668da65 Added file create/open/close callbacks. These just perform the 
file operations right now and don't deal with JSON streams.
 2019-01-06 08:22:31 -08:00
Dana Robinson
1a95b844f2 * Checked in a correction to Makefile.am 
* Added a BRANCH.md file
* Added Jansson configuration support
 2019-01-06 07:09:43 -08:00
Dana Robinson
25a8e2e680 Added the JSON VOL connector plugin framework and a test to 
ensure that the plugin can be loaded.
 2019-01-06 06:48:41 -08:00
Quincey Koziol
ca1c9cff1a Merge pull request #1438 in HDFFV/hdf5 from mpio_vfd_neaten to develop 
* commit '8a5d2c130a93a665933cda8db8554d006b7ca093':
  Clean up style issues, make function callbacks static, correct debug statements, etc.  No functionality changes at all.
 2019-01-06 01:55:26 -06:00
Quincey Koziol
8a5d2c130a Clean up style issues, make function callbacks static, correct debug statements, 
etc.  No functionality changes at all.
 2019-01-05 17:13:40 -06:00
Larry Knox
0e34f0feaa Merge pull request #1433 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop 
* commit '564565b15ed38d78cb7b29b8c9d9b322d224ab42':
  HDFFV-10664 update reference file
  HDFFV-10664 update reference files
  HDFFV-10664 add missing function and check for restriction
 2019-01-04 14:31:51 -06:00
Jordan Henderson
b0feaecdb9 Merge pull request #1425 in HDFFV/hdf5 from ~JHENDERSON/hdf5:develop to develop 
* commit '659dd9bccf69f32bfdd01dc49410116ec5c1b0bb':
  Align H5Lcreate_ud behavior with documentation for NULL udata pointer
 2019-01-04 14:06:10 -06:00
Allen Byrne
564565b15e HDFFV-10664 update reference file 2019-01-04 13:29:22 -06:00
Allen Byrne
e07fb46bdc HDFFV-10664 update reference files 2019-01-04 13:29:01 -06:00
Larry Knox
8887c357ee Merge pull request #1429 in HDFFV/hdf5 from HDFFV-10596-fortran-library-names-differ to develop 
* commit 'f4c9ec5d41aa53829617274d3286f1e9a45ae57e':
  Add RELEASE.txt entry for HDFFV-10596.
  Uninstall should remove the libhdf5_hl_fortran links.
  Add symlinks named libhdf5_hl_fortran* to libhdf5hl_fortran in Makefile.am to match cmake install and the name pattern for other hl lib files.
 2019-01-04 13:04:41 -06:00
Larry Knox
f4c9ec5d41 Merge remote-tracking branch 'origin/develop' into HDFFV-10596-fortran-library-names-differ 2019-01-04 13:02:27 -06:00
Allen Byrne
28d5d987b5 HDFFV-10664 add missing function and check for restriction 2019-01-04 12:52:37 -06:00
jake.smith
46bf1647d4 Merge pull request #1430 in HDFFV/hdf5 from ~JAKE.SMITH/hdf5:dset_ohdr_minimize to develop 
* commit 'f7115c31363e80e850c0a228e63a5a035c48b74a':
  Remove "bad" statements at end of TEST_ERROR.     Formerly arguments to FAIL_PUTS_ERROR
  Add semicolon at end of TEST_ERROR() invocation for consistency.
 2019-01-04 11:46:54 -06:00
Jacob Smith
f7115c3136 Remove "bad" statements at end of TEST_ERROR. 
Formerly arguments to FAIL_PUTS_ERROR
 2019-01-04 11:28:39 -06:00
Dana Robinson
f012602d3a Merge pull request #1428 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:openmpi_tweaks to develop 
* commit 'd59aa1d75cb6d0ae4f5964d017e275aa53394eb6':
  Cleaned up the parallel flush test and set t_pflush1 to always fail. Also set CMake to handle this.
 2019-01-04 10:35:22 -06:00
Larry Knox
482d95c8f9 Add RELEASE.txt entry for HDFFV-10596. 2019-01-04 09:34:18 -06:00
Jacob Smith
a0c6e622e4 Add semicolon at end of TEST_ERROR() invocation for consistency. 2019-01-04 09:07:55 -06:00
Larry Knox
cc0421291e Uninstall should remove the libhdf5_hl_fortran links. 2019-01-04 08:50:10 -06:00
Larry Knox
30abf02de2 Add symlinks named libhdf5_hl_fortran* to libhdf5hl_fortran in 
Makefile.am to match cmake install and the name pattern for other hl lib
files.

Add missing ';' to test/dsets.c line 13075.
 2019-01-04 07:26:15 -06:00
jake.smith
9ac12ce299 Merge pull request #1427 in HDFFV/hdf5 from ~JAKE.SMITH/hdf5:dset_ohdr_minimize to develop 
* commit '763db8178e673fdcae4a370fe2e6d345f905d5f1':
  Change FAIL_PUTS_ERROR to TEST_ERROR.
  Update calls: H5Dcreate to H5Dcreate2, H5Acreate to H5Acreate2.
 2019-01-03 23:16:12 -06:00
Jacob Smith
763db8178e Change FAIL_PUTS_ERROR to TEST_ERROR. 2019-01-03 23:02:20 -06:00
Dana Robinson
d59aa1d75c Cleaned up the parallel flush test and set t_pflush1 to always fail. 
Also set CMake to handle this.
 2019-01-03 20:45:58 -08:00
Allen Byrne
2a28b92e2b Merge pull request #1426 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop 
* commit 'f4516d40feb7ea696e228253bc64a94f55296cbb':
  Fix comment
  Update toolchain comment
  Use c99 standard cmake variable
  Add PGI toolchain
 2019-01-03 14:47:10 -06:00
Jacob Smith
3b53747b3a Update calls: H5Dcreate to H5Dcreate2, H5Acreate to H5Acreate2. 2019-01-03 14:44:57 -06:00
Binh-Minh Ribler
5daddcc2d4 Merge pull request #1408 in HDFFV/hdf5 from ~BMRIBLER/hdf5_bmr_fixbug:develop to develop 
Merged to catch daily test.

* commit '40c55f24ecbdd322fba527d768689fbdbd268374':
  Removed a comment.
  Fixed documentation - typo only
  Fixed CVE division-by-zero issues Description:     Fixed HDFFV-10577 and similar issues found in H5Dchunk.c.  All     the occurrences are in:         H5D__create_chunk_map_single         H5D__create_chunk_file_map_hyper         H5D__chunk_allocate         H5D__chunk_update_old_edge_chunks         H5D__chunk_prune_by_extent         H5D__chunk_copy_cb         H5D__chunk_collective_fill Platforms tested:     Linux/64 (jelly)     Linux/64 (platypus)     Darwin (osx1010test)
 2019-01-03 09:50:01 -06:00
Binh-Minh Ribler
40c55f24ec Removed a comment. 2019-01-03 09:47:01 -06:00
Allen Byrne
f4516d40fe Fix comment 2019-01-03 09:36:00 -06:00
Jordan Henderson
659dd9bccf Align H5Lcreate_ud behavior with documentation for NULL udata pointer 
Add test for H5Lcreate_ud fix
 2019-01-03 09:35:44 -06:00
Allen Byrne
9d0c66c7cb Update toolchain comment 2019-01-03 09:33:55 -06:00
Allen Byrne
6f6d0921c0 Use c99 standard cmake variable 2019-01-02 17:07:37 -06:00
Allen Byrne
eaaddcc9e5 Add PGI toolchain 2019-01-02 14:39:38 -06:00
Allen Byrne
c820502e69 Merge pull request #1421 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop 
* commit 'ed0c468902409ae7fa8fb91c5f5a3a3093846736':
  HDFFV-10664 add check for state before set call
  HDFFV-10546 refactor variable name
  HDFFV-10664 minimized dataset headers for java interface
 2019-01-02 14:38:30 -06:00
Vailin Choi
c70498f7a9 Merge pull request #1414 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to develop 
* commit 'd3dff6efe6f769b219f9dcccebd057afe75ed3c7':
  Correction based on code review.
  Changes based on feedback from pull request.
  Fix for HDFFV-10659: The library abort with "infinite loop closing library" after deleting attributes in densed storage. The fix: When deleting attribute nodes from the name index v2 B-tree, if an attribute is found in the intermediate B-tree nodes, which may be merged/redistributed in the process, we need to free the dynamically allocated spaces for the intermediate decoded attribute.
 2019-01-02 13:26:58 -06:00
Vailin Choi
d3dff6efe6 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into develop 
Resolve conflicts:
Conflicts:
	test/Makefile.am
 2019-01-02 13:23:54 -06:00
Vailin Choi
7f9c459995 Correction based on code review. 2019-01-02 12:51:47 -06:00
Allen Byrne
ed0c468902 HDFFV-10664 add check for state before set call 2019-01-02 12:47:37 -06:00
jake.smith
71f4e1832c Merge pull request #1420 in HDFFV/hdf5 from ~JAKE.SMITH/hdf5:dset_ohdr_minimize to develop 
* commit '8324be7fad5f1417aca3d283a8f8caf6b75c4af7':
  fix wrong function name that is missed by correctional macro
 2019-01-02 12:29:11 -06:00
Allen Byrne
f3636c573f HDFFV-10546 refactor variable name 2019-01-02 11:27:55 -06:00
Allen Byrne
fb5d3347e6 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop) 
* commit 'af21ce90d9465e805807f17da21f93e64e03492a':
  Changed to Unix line endings and chmod -x.
  Cleaned up and normalized VFD init calls.
 2019-01-02 09:03:43 -06:00
Dana Robinson
af21ce90d9 Merge pull request #1423 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor_pr to develop 
* commit '1f644fe7cd0188628571c5527f51fce4ddeeebf4':
  Changed to Unix line endings and chmod -x.
 2019-01-02 07:14:37 -06:00
Dana Robinson
1f644fe7cd Changed to Unix line endings and chmod -x. 2019-01-01 14:30:26 -08:00
Dana Robinson
d5f642b559 Merge pull request #1422 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:vfd_init_cleanup to develop 
* commit '07b76068a4517f874fc5584049178ed5f61e3cea':
  Cleaned up and normalized VFD init calls.
 2019-01-01 12:50:00 -06:00
Dana Robinson
07b76068a4 Merge branch 'develop' into vfd_init_cleanup 2018-12-31 17:19:39 -08:00
Allen Byrne
c3cad8e5f3 HDFFV-10664 minimized dataset headers for java interface 2018-12-31 16:34:07 -06:00
Jacob Smith
8324be7fad fix wrong function name that is missed by correctional macro 2018-12-31 15:18:13 -06:00
Allen Byrne
fa6077332b Merge pull request #1416 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop 
* commit '0e6cf18b06d71dc8da9307dddce5e1833f197e19':
  Fix runtest case for data to stdout in tool
 2018-12-31 14:07:57 -06:00