benchpar.c is compiled when configure --enable-build-all --enable-paralllel.
But it failed to compile. It is decided to retire or move it to example.
I removed it from the PARA_BUILD_ALL list so that --enable-build-all will
not fail. The program file still need to be moved.
Tested: Koala using --enable-build-all --enable-parallel.
Description: The Fortran compiler flags were all set to "-O". They should be
different setting for different situations. E.g, "-g" for debug and
"-pg" for profile, etc.
Fix: set them to appropriate different values.
Tested: in Remote ADA AIX machines using 3 different settings:
configure --enable-fortran --enable-cxx # default to --disable-production
configure --enable-fortran --enable-cxx --enable-production
configure --enable-fortran --enable-cxx --disable-production
It goes down to the error handling branch and prints "FAILED". The fix is adding "return 0;" in the end of the function.
Tested on jam - simple change.
HDFFV-8012 - h5repack changes max dims and cause failure if only "-f none" is used without changing layout for chunked dataset when a chunk dim is bigger than a dataset dim
Description:
"h5repack -f <obj>:NONE <file.h5> out.h5" command failed if source file contains chunked dataset and a chunk dim is bigger than a dataset dim.
Another issue is that the command changed max dims if chunk dim is smaller than the dataset dim.
These issue occurred when dataset size is smaller than 64k (compact size limit)
Fixed them.
Merged from HDF5 trunk r22805
Tested:
jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), cmake (jam)
distribute by the author. It was an example program showing how to measure
parallel IO speed. Since then, we have created h5perf to do I/O performanace
measurement. This example is not needed any more.
mpi-perf.c:
Removed.
Makefile.am:
Makefile.in:
Removed the entry of mpi-perf.c so that "configure --enable-build-all ..."
will not build it.
MANIFEST:
Updated.
The change is trivial that I got permission to skip the code review step.
Tested: h5committest plus "--enable-parallel --enable-build-all" in koala.
HDFFV-8143 Provide a routine(s) for telling the user why the library broke collective data access
Description:
Changed to use H5Dopen2() instead of H5Dopen(), which caught by daily test on jam.
This is based on previous commit r22780.
Tested:
jam-pp (linux32-LE)
HDFFV-8143 Provide a routine(s) for telling the user why the library broke collective data access
Description:
Added H5Pget_mpio_no_collective_cause() function that retrive reasons why the collective I/O was broken during Read/Write IO access.
Reasons to break collective I/O:
- SET_INDEPENDENT
- DATATYPE_CONVERSION
- DATA_TRANSFORMS
- MPIPOSIX
- NOT_SIMPLE_OR_SCALAR_DATASPACES (NULL Space)
- POINT_SELECTIONS
- NOT_CONTIGUOUS_OR_CHUNKED_DATASET (Compact or External-Storage)
- FILTERS
Merged from HDF5 trunk r22735, r22741 , 22743, 22744, 22763.
Tested:
jam-pp (linux32-LE), koala-pp (linux64-LE), wallaby-pp
Update RELEASE.txt
Description:
Merge changes from 1.8.9's known issues and platforms tested
section of the RELEASE.txt up to the 1.8 branch in preparation
for the 1.8.10 release.
Bring r22765 from trunk to 1.8 branch:
Propogate Coverity changes to trunk, also fix compiler warnings and
other minor code cleanups. (QK & JK)
r20393: (Not directly propogated, since trunk also had a similar fix)
Move initialization ocrt_info.new_obj = NULL; before FUNC_ENTER_NOAPI -- gh
r20397:
Added free(src_sizes) --gh
r20398:
Added free(src_offset). --gh
Tested on:
Mac OSX/64 10.7.4 (amazon) w/debug, parallel, FORTRAN & C++
(h5committest forthcoming)
Bring r22758 from trunk to 1.8 branch:
Bring generic improvements from encode/decode property list branch to
the trunk. This includes a better version of the property list comparison
routine, cleaned up compiler warnings, and some cleaned up property list
callbacks. Also, started on changes to clean up parallel test output, so that
it doesn't report successful tests from each process.
Tested on:
Mac OSX/64 10.7.4 (amazon) w/debug, GCC 4.7.x, FORTRAN, C++, threadsafe and parallel
(h5committested on trunk)
HDFFV-5919 - GMQS: h5diff - The number of object difference is not consistent between dataset and group/type when attribute(s) have differences
Description:
Object differences are not consistent between dataset and group/datatype when their attribute(s) have differences. This is because attribute(s) differences is not accumulated to group or datatype object’s difference, but accumulated to dataset difference.
To fix, do not accumulate attribute difference to dataset difference. This is referred to h5diff’s default behavior and also past report from users that users were confused by the accumulated behavior. (also can’t figure out only for dataset difference , also hard to spot dataset difference when it has lots of attributes or differences)
This also lead to fix inconsistent format indicating difference between dataset and group/datatype object.
Merged from HDF5 trunk r22751.
Tested:
jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), cmake (jam)
Convert configure.in to configure.ac.
Align TESTS usage with autotools convention.
Update all references from configure.in to configure.ac
Tested: h5committest
Bring r22707 from trunk to 1.8 branch:
Bring back some more cleanups from the plist_encode_decode branch, clean up
some formatting and compiler errors, and add a few more property comparison
routines that we've skipped implementing in the past.
Tested on:
Mac OSX/64 10.7.4 (amazon) w/debug
(Too minor to require h5committest)
Address HDFFV-7942 - h5diff: incorrect result for comparing attribute data with different type size in same class
Description:
When comparing attribute data values with same type class but different size, the result was incorrect. It was due to the size difference and got truncated.
Fixed to match up the smaller type size to big type size like what dataset does.
Merged from HDF5 trunk r22684 and r22691.
Tested:
jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), Windows (32-LE cmake), cmake (jam)
Bring r22681 from trunk to 1.8 branch:
Clean up file driver property handling, along with some misc. warnings.
Tested on:
Mac OSX/64 10.7.4 (amazon) w/debug, gcc 4.7.1, C++, FORTRAN & threadsafe
(h5committest upcoming)
Also changed H5O_copy_search_comm_dt_check() to use H5O_obj_class() to get object type instead of H5O_get_info(...TRUE...) saving time in traversing metadata.
