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Author SHA1 Message Date
Allen Byrne
6ae314a698 Whitespace and macro semi-colon 2019-10-02 12:42:31 -05:00
Allen Byrne
9882e40825 Whitespace synch 2019-10-02 09:58:34 -05:00
Allen Byrne
860ee9ed6e HDFFV-10918 add tests for h5repack ext storage 2019-10-02 09:47:21 -05:00
Allen Byrne
a59f07dfef Merge pull request #1969 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_12 to hdf5_1_12 
* commit 'c86b21b05bc2e4e45f42969dea7bd82e66f75926':
  More whitespace synching
  Cleanup whitespace and comments compared to develop
 2019-10-02 09:41:17 -05:00
Allen Byrne
c86b21b05b More whitespace synching 2019-10-02 09:40:43 -05:00
Allen Byrne
b6f9fcaec5 Cleanup whitespace and comments compared to develop 2019-10-02 09:22:11 -05:00
Allen Byrne
3ad1014b07 Merge pull request #1967 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_12 to hdf5_1_12 
* commit 'f2bb38e23a08bb39160a7b8270eb542e6f18836a':
  Add new toolchain file
 2019-10-01 11:49:11 -05:00
Allen Byrne
f2bb38e23a Add new toolchain file 2019-10-01 10:10:45 -05:00
Allen Byrne
087a111adf Merge pull request #1964 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_12 to hdf5_1_12 
* commit 'e8c8c29342df3213795bcdfd78f203510ba69362':
  fix for statement declare variable
 2019-09-30 15:14:12 -05:00
Allen Byrne
e8c8c29342 fix for statement declare variable 2019-09-30 14:56:30 -05:00
Larry Knox
bffa18b684 Merge pull request #1957 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop 
* commit '3fb711e0ff2516cba7a0cb34f2d8ca38241b06a7':
  Number of arguments requires H5Dopen2.
 2019-09-30 14:24:52 -05:00
Vailin Choi
6ffdd4f2d6 Merge pull request #1934 in HDFFV/hdf5 from ~VCHOI/my_third_fork:bugfix/HDFFV-10585-investigate-slowness-of-regular to develop 
* commit '7924eee0e5ee0745b784c635042b8633886fb799':
  (1) Address the feedback from the PR review (2) Add release notes
  Fix for HDFFV-10585 investigate hyperslab slowness: 1) Improve hyperslab performance when doing I/O from 1-d disjoint file dataspace to 1-d contiguous memory dataspace. 2) Move coding in H5D__chunk_io_init() that is constructing the chunk mappings to a separate routine.
 2019-09-30 13:50:59 -05:00
Allen Byrne
627170a856 Merge pull request #1961 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_12 to hdf5_1_12 
* commit 'cd30b3b13a560643d0534b1d7e0557696e026574':
  Add clang toolchain
 2019-09-30 13:35:44 -05:00
Allen Byrne
cd30b3b13a Add clang toolchain 2019-09-30 13:08:57 -05:00
Allen Byrne
d6d7ac084b Merge pull request #1952 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_12 to hdf5_1_12 
* commit '839566f5fc2b9de596bbf6d969f8d0ec5396e4b4':
  add missing version to list
 2019-09-26 11:00:05 -05:00
Allen Byrne
839566f5fc add missing version to list 2019-09-26 10:44:43 -05:00
Allen Byrne
7828febf44 Merge pull request #1949 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_12 to hdf5_1_12 
* commit '5603178cbec8161cac00b013d6a4a63bee4ba86d':
  Correct default CDash name
 2019-09-26 07:37:27 -05:00
Allen Byrne
5603178cbe Correct default CDash name 2019-09-25 22:21:31 -05:00
Larry Knox
e7dbf81191 Set versions in initial hdf5_1_12 revision. hdf5_1_12-initial 2019-09-25 15:57:22 -05:00
Larry Knox
6632780f41 Merge pull request #1943 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop 
* commit '2a4bc8c63e842d5e7551e6e75a9ca95c0c2d2886':
  Merge Binh-Minh's changes for code improvement to chunk_info.c (PR #1942) to develop branch.
 2019-09-25 15:10:37 -05:00
Larry Knox
2a4bc8c63e Merge Binh-Minh's changes for code improvement to chunk_info.c (PR #1942) 
to develop branch.
 2019-09-25 14:30:54 -05:00
Jake Smith
f77d8f04fd Merge pull request #1756 in HDFFV/hdf5 from ~JAKE.SMITH/hdf5:bugfix/repack_external_storage to develop 
* commit '9a388325ebaec339f67ddd210ca31ddcc3ede973':
  Update to current external file population.
  Revert else-if to single line.
  Change print calls to HD-wrapped. Minor formatting tweaks (inc. regressions and in-file style-matching).
  Refactor h5repackgentest to have more modular internals, for easier addition of new tests. Update manifest and test script for new hdf5 external-storage .h5 files.
  Refactoring.
  Add copyright/disclaimer to repack gentest. Minor formatting tweaks.
  Minor formatting adjustments.
  Undo some formatting modifications. Update MANIFEST.
  Add forgotten files to include from h5repack testfiles for tests.
  Fix failing automated reporting. Add 8-bit big-endian testfile.
  First pass at repack consolidating external storage if layout given. Checks out manually, tests still complain.
  Formatting changes, mostly.
  Add initial failing test for h5repack copying external data into new file.
  Modify code comments for clarity. Some minor reformatting.
  Some minor reformatting. Replace tabs with spaces.
  Add test that uses the family member FAPL setting.
  refactor h5repack_main.c -- remove some redundancy, formatting
  Fit help message to 80 character width and clarify some details.
 2019-09-24 16:43:30 -05:00
Jacob Smith
9a388325eb Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~jake.smith/hdf5 into bugfix/repack_external_storage 2019-09-24 16:40:02 -05:00
Allen Byrne
9c73ed788a Merge pull request #1940 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop 
* commit '8a2a500fef227e4f813f0059b365869268354048':
  Fix missing option and incorrect close
 2019-09-24 16:12:51 -05:00
Jacob Smith
4ecc50bc13 Update to current external file population. 2019-09-24 15:29:56 -05:00
Jacob Smith
1f7d556ccd Revert else-if to single line. 2019-09-24 15:22:38 -05:00
Allen Byrne
8a2a500fef Fix missing option and incorrect close 2019-09-24 14:49:37 -05:00
Dana Robinson
6b60b95dbb Merge pull request #1939 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor_pr to develop 
* commit '6eb506eff76b5455f8aac8889c6809aca2d8be52':
  Revert "Moved NDEBUG guards to H5EA_DEBUG in H5EA package."
  Revert "Fix for H5EA debug package when built in release mode."
 2019-09-24 10:42:32 -05:00
Dana Robinson
6eb506eff7 Revert "Moved NDEBUG guards to H5EA_DEBUG in H5EA package." 
This reverts commit 431123503d.
 2019-09-24 05:20:30 -05:00
Dana Robinson
40b2eae5e9 Revert "Fix for H5EA debug package when built in release mode." 
This reverts commit 911b1ca67f.
 2019-09-24 05:19:44 -05:00
Jacob Smith
35a9e9c50f Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~jake.smith/hdf5 into bugfix/repack_external_storage 2019-09-23 17:23:02 -05:00
Jacob Smith
1070468dac Change print calls to HD-wrapped. 
Minor formatting tweaks (inc. regressions and in-file style-matching).
 2019-09-23 16:25:25 -05:00
Jacob Smith
aa797af31b Refactor h5repackgentest to have more modular internals, for easier 
addition of new tests.
Update manifest and test script for new hdf5 external-storage .h5 files.
 2019-09-23 16:21:37 -05:00
Larry Knox
7997eb8c84 Merge pull request #1937 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop 
* commit 'cf9eff93e05c9e68d82ebb1fc1e02319e428af35':
  Remove obsolete symbol
  small syntax changes
 2019-09-23 12:39:01 -05:00
Allen Byrne
cf9eff93e0 Remove obsolete symbol 2019-09-20 09:30:36 -05:00
Allen Byrne
0c49a77c19 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop) 
* commit '93e8bbd9f47d6a2eace95f2ed3b2dd4b6336940a':
  Renamed get/set_time() calls in the tools library to avoid name clash when building static parallel HDF5 w/ static linking to OpenMPI.
 2019-09-19 16:57:51 -05:00
Dana Robinson
93e8bbd9f4 Merge pull request #1936 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor_pr to develop 
* commit 'a6930a2bcfd37ea3610baafb608faec883286315':
  Renamed get/set_time() calls in the tools library to avoid name clash when building static parallel HDF5 w/ static linking to OpenMPI.
 2019-09-19 16:42:46 -05:00
Allen Byrne
aa8c7b31d7 small syntax changes 2019-09-19 16:32:40 -05:00
Dana Robinson
a6930a2bcf Renamed get/set_time() calls in the tools library to avoid name 
clash when building static parallel HDF5 w/ static linking to OpenMPI.
 2019-09-19 13:50:49 -07:00
Allen Byrne
80b371f32e Merge pull request #1926 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop 
* commit '8cddc96f73e8f90f67792405f5142b419e9061d7':
  Change unused variable to generic form
  Whitespace cleanup
  Add missing HD prefix
  HDFFV-10740 - skip copying dirs in for loops
  Correct HDF5 options to tristate values.
  HDFFV-10905 fix test scripts for no zlib
  HDFFV-10903 - fix VFD constants in JNI
 2019-09-19 14:15:54 -05:00
Allen Byrne
8cddc96f73 Change unused variable to generic form 2019-09-19 13:42:46 -05:00
Allen Byrne
ddf23c80fc Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop) 
* commit '4d4a88a9f3775d1c6be820208a2699ae38d586b4':
  Fix for H5EA debug package when built in release mode.
 2019-09-19 08:48:07 -05:00
Dana Robinson
4d4a88a9f3 Merge pull request #1932 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor_pr to develop 
* commit '911b1ca67fdf7c2f3a32dd42c591e4e9b2fa1950':
  Fix for H5EA debug package when built in release mode.
 2019-09-18 16:28:09 -05:00
Dana Robinson
911b1ca67f Fix for H5EA debug package when built in release mode. 2019-09-18 13:25:02 -07:00
Allen Byrne
6f34503a5a Whitespace cleanup 2019-09-18 12:11:12 -05:00
Allen Byrne
4775b6a3d9 Add missing HD prefix 2019-09-18 11:15:58 -05:00
Allen Byrne
624d5d9a8e HDFFV-10740 - skip copying dirs in for loops 2019-09-18 11:04:09 -05:00
Allen Byrne
671649f6f2 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop) 
* commit '57f1a2124c65283fc48c4ca700392e1682d0e754':
  Moved NDEBUG guards to H5EA_DEBUG in H5EA package.
 2019-09-18 08:46:11 -05:00
Dana Robinson
57f1a2124c Merge pull request #1930 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor_pr to develop 
* commit '431123503d387bce30b1f6db7dc4ad3a33bc51bb':
  Moved NDEBUG guards to H5EA_DEBUG in H5EA package.
 2019-09-17 20:17:14 -05:00
Dana Robinson
431123503d Moved NDEBUG guards to H5EA_DEBUG in H5EA package. 2019-09-17 16:53:18 -07:00