Commit Graph

79 Commits

Author SHA1 Message Date
Dana Robinson
9c255bc995 Normalization of tools with develop 2020-08-18 10:22:19 -07:00
Dana Robinson
1ae6daaa80 Sync with develop 2020-08-01 09:18:18 -07:00
Allen Byrne
9f1d06c7f1 Whitespace cleanup 2020-05-12 16:14:30 -05:00
Allen Byrne
0c1adcc26f Fix standalone link in perform tools 2020-02-25 15:06:21 -06:00
Allen Byrne
9ed096fb39 Merge changes from develop mostly cmake 3.12 minimum version 2020-02-23 11:55:47 -06:00
David Young
d42bee3688 Squashed commit of the following:
commit ff7a9a34de2fcd78f5d32a1532f3d0e224b20d94
Author: Kimmy Mu <kmu@hdfgroup.org>
Date:   Wed Jan 29 14:12:18 2020 -0600

    Merge pull request #2324 in HDFFV/hdf5 from ~KMU/hdf5:hdf5_1_12 to hdf5_1_12

    * commit '781fa57f6ee816e037dd12fff02d37ff7ec9c2b1':
      pick up missing piece from merge
      Merge pull request #2311 in HDFFV/hdf5 from ~KMU/hdf5:misc to develop
      remove redundent definition
      Merge pull request #2311 in HDFFV/hdf5 from ~KMU/hdf5:misc to develop
      Merge pull request #2311 in HDFFV/hdf5 from ~KMU/hdf5:misc to develop
      Merge pull request #2315 in HDFFV/hdf5 from ~KMU/hdf5:develop to develop
      missing prototype warning
      prototype issue
      Merge pull request #2306 in HDFFV/hdf5 from ~KMU/hdf5:develop to develop
      Merge pull request #2300 in HDFFV/hdf5 from ~KMU/hdf5:squashed_cast to develop
      Merge pull request #2291 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/uninitialized to develop
      Merge pull request #2295 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/float to develop
      Merge pull request #2292 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/prototype to develop
      Merge pull request #2094 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/unused to develop

commit 9f3d808c05d2a3b308f32c958c6671fcac0a432c
Author: David Young <dyoung@hdfgroup.org>
Date:   Wed Jan 29 11:43:55 2020 -0600

    testpar/t_2Gio.c: Fix a typo that I think was introduced by a
            previous warnings PR.  An array element was assigned to
            itself---shape[2]Â =Â shape[2];---instead of being assigned to
            chunk[2].

    fortran/src/H5Pf.c: move conditional compilation controlled by
            H5_NO_DEPRECATED_SYMBOLS outside of a function for readability.

    fortran/src/H5match_types.c: put a variable's declaration under the same
            conditional compilation (H5_FORTRAN_HAVE_C_LONG_DOUBLE) as its
            use.

    For now, skip compilation of some unused debug dump routines in the JNI.
    While I'm in the JNI, delete a set-but-unused variable.

    src/H5Z.c: condition a variable declaration on H5_NO_DEPRECATED_SYMBOLS
            so that it's not declared but unused or vice versa.

    test/cache_common.h: add an #include in to get some symbols we need to
            avoid implicit declaration warnings.

    test/dsets.c: use a more conventional conditional-compilation syntax.

    test/dt_arith.c, test/fillval.c: initialize a bunch of uninitialized
            variables before use.

    test/vfd.c: pass the expected type of `void **` to posix_memalign(3)
            instead of `int **`.

    testpar/t_bigio.c: explicitly compare with 0 instead of using ! when
            "equal to 0?" is the question not "is false?"  Repair some
            indentation while I'm here.

    testpar/testpar.h: repair misaligned line-continuation backslashes in a
            macro that probably should be a function so that we don't have
            to fiddle with the line continuation to begin with.

    tools/src/h5repack/h5repack_main.c: fix some compiler fussing about
            enums.

    tools/test/perform/pio_engine.c: the compiler fusses if you cast a
            function call returning double directly to off_t.  It's ok if
            you cast a variable that's a double to off_t, however.  Write
            and use a new function, sqrto(), to avoid the cast warnings.

commit 43a4b80b21c0329fbc1f9a0e2854795189f0bb50
Author: David Young <dyoung@hdfgroup.org>
Date:   Wed Jan 29 10:47:30 2020 -0600

    Reduce casts of HDcalloc()/HDmalloc() that -Wc++-compat required.

    Reduce gratuitous casts---e.g., (size_t)1.

    Use the right format string for a pointer.

    In the H5C sanity checks, change a "size increase" variable from ssize_t
    (too narrow) to int64_t (wide enough).

    Parenthesize every appearance of `storage` in the macro
    `H5D_CHUNK_STORAGE_INDEX_CHK(storage)` so that you can pass in an
    expression like &sc and it works properly.

    Disallow re-assignment of the `dset` parameter to H5D__chunk_init()
    because it helped assure me that it's safe to replace the repeating
    expression `&dset->shared->layout.storage.u.chunk` with `sc` throughout.

    Replace lengthy expressions such as
    `&dset->shared->layout.storage.u.chunk` with `sc` throughout several
    functions in H5Dchunk.c ISTR that the compiler warned that `sc` was
    declared but unused in a couple of functions, and then I found that `sc`
    could be used in many places.  Maybe the disused `sc` appeared because a
    bunch of code was copied and pasted, I don't know.  Anyway, it's a lot
    tighter code now that I use `sc`.

    In H5D__chunk_update_old_edge_chunks() and H5D__chunk_delete()
    I actually expand `sc` and another temporary variable, `pline`,
    because they're used only in !defined(NDEBUG) code.  This squashes
    unused-variable warnings in the defined(NDEBUG) configuration.

    Don't drop the `volatile` qualification with a cast in
    tools/src/h5import/h5import.c.

commit 035bfa0769a4012881fc659b673bacf44d146537
Author: David Young <dyoung@hdfgroup.org>
Date:   Tue Jan 28 20:35:28 2020 -0600

    Reduce differences between my -Werror branch and `develop`:

    Rename index -> idx, fileno -> fnumber, fileno -> fno to avoid GCC
    shadowed declaration warnings about index(3).

    Convert #pragma GCC diagnostic push/pop/ignored to the HDF5 library's
    H5_GCC_DIAG_OFF()/H5_GCC_DIAG_ON() macros.
2020-01-31 13:53:26 -06:00
Kimmy Mu
d4dedac70f Merge pull request #2311 in HDFFV/hdf5 from ~KMU/hdf5:misc to develop
* commit '406330addf45529ecdd088f4d22e9aab9a03661d':
  rename macro
  change condition
  pick up from Dave's fix
  leave Wswitch-default for later fix
  fix Wredundant-decls, Wswitch-default, Wdeclaration-after-statement, Wsign-compare, Wmisleading-indentation, Wshadow
2020-01-28 15:47:58 -06:00
Kimmy Mu
fe75e8f66f Merge pull request #2300 in HDFFV/hdf5 from ~KMU/hdf5:squashed_cast to develop
* commit 'af5c33afabdae2e39bb45eb1b3e9c8366da01145':
  remove unnecessary stuff
  squash cast warning fix
2020-01-27 20:47:06 -06:00
Kimmy Mu
b87a4362a1 Merge pull request #2291 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/uninitialized to develop
* commit '2de0ce0d8ba2fb58fadefc5d718a3c0fedab25c8':
  fix uninitizlized warning
2020-01-27 20:44:23 -06:00
Kimmy Mu
a4f163c7c6 Merge pull request #2295 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/float to develop
* commit '9afaf94bef740f89958a1a8aae369d5f607845f4':
  not use hdf5 private header
  fix float type cmp warning
  fix float type cmp warning
2020-01-27 20:43:34 -06:00
Kimmy Mu
2cd1e08d70 Merge pull request #2292 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/prototype to develop
* commit '9f80ffa1f1908975b3100814b2529bf779521e13':
  fix missing prototype warning
2020-01-27 20:42:32 -06:00
Kimmy Mu
066b874e5a Merge pull request #2094 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/unused to develop
* commit '145ef3ceee20c28a443bd11507c58858bea3f889':
  more cleanup
  change it back
  pick up missing piece
  fix unused related warnings
  removed unused parameter
  more fix and address comments
  remove unsed var,function,macro, etc
2020-01-27 20:39:58 -06:00
Allen Byrne
6bae11bb5b Improved CMake options for tests 2020-01-19 07:53:46 -06:00
Allen Byrne
c355ed9cf9 Merge perform standalone changes from develop 2020-01-17 13:56:40 -06:00
Allen Byrne
06f3c95c6e Merge tools changes from develop 2020-01-13 11:35:40 -06:00
Allen Byrne
105c94dd2b Fix CMake test macros and perform standalone tests 2020-01-12 09:35:48 -06:00
Allen Byrne
a11b49fca2 Add MPI libs for standalone perf 2019-12-22 12:16:00 -06:00
Allen Byrne
56765f8110 Fix autotools test scripts 2019-12-22 11:55:54 -06:00
Allen Byrne
fa7036c087 Add ref files to test script 2019-12-21 17:37:42 -06:00
Allen Byrne
4e652fe75f Standalone doesn't use h5test implementation. 2019-12-20 09:28:24 -06:00
Allen Byrne
ed23b6baad Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_12)
* commit '1097ac60c2b95a2b958a3150b537c75f512cacca':
  Merge t_2Gio test into hdf5_1_12.  This will eventually be refactored out after merging the test functionality into the testphdf5 test.
  Merge t_2Gio test into hdf5_1_12.  This will eventually be refactored out after merging the test functionality into the testphdf5 test.
  Minor tweaks noticed while going over VOL documentation.
  Yanked -Wc++-compat from the flags used to build the C library in both the Autotools and CMake.
  Fixed missing blob callbacks in test VOL connectors.
  Trivial parameter renaming in VOL API calls.
2019-12-17 08:54:04 -06:00
Dana Robinson
957940befb Yanked -Wc++-compat from the flags used to build the C library in both
the Autotools and CMake.
2019-12-16 08:13:47 -08:00
Allen Byrne
0ea37eb930 Remove duplicate instance 2019-12-16 09:47:41 -06:00
Dana Robinson
93e8bbd9f4 Merge pull request #1936 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor_pr to develop
* commit 'a6930a2bcfd37ea3610baafb608faec883286315':
  Renamed get/set_time() calls in the tools library to avoid name clash when building static parallel HDF5 w/ static linking to OpenMPI.
2019-09-19 16:42:46 -05:00
Dana Robinson
a6930a2bcf Renamed get/set_time() calls in the tools library to avoid name
clash when building static parallel HDF5 w/ static linking to OpenMPI.
2019-09-19 13:50:49 -07:00
Allen Byrne
4775b6a3d9 Add missing HD prefix 2019-09-18 11:15:58 -05:00
Allen Byrne
09d13b3c13 OESS-29 Fix HD prefix in perform and enable test compile 2019-08-27 16:49:10 -05:00
Allen Byrne
f5a250e77c Whitespace cleanup 2019-08-15 09:03:03 -05:00
Allen Byrne
6a932198aa HDFFV-10529 Update CMake tests to use test fixtures 2019-07-23 16:24:56 -05:00
Allen Byrne
f724e86727 HDFFV-10845 use of TARGETFILE disables auto emulator 2019-07-17 11:58:04 -05:00
Allen Byrne
9655485f6a non-windows test must be skipped on windows 2019-07-11 10:20:04 -05:00
Quincey Koziol
73df02f13c Merge branch 'develop' into feature/update_gcc_flags 2019-07-09 22:17:22 -05:00
Quincey Koziol
db7c43d375 Updates to warnhist script, along with a few cleanups, and add some comments
to warning cleanups that are a bit obscure.
2019-07-09 22:15:36 -05:00
Allen Byrne
c424877351 perf program can only be built on unix platforms 2019-07-08 15:37:58 -05:00
Allen Byrne
c88caec5ae Declaration needed for parallel standalone 2019-07-08 15:33:31 -05:00
Quincey Koziol
78e13fe8b0 Merge branch 'develop' into feature/update_gcc_flags 2019-07-05 13:33:13 -05:00
Allen Byrne
1c7420d1e3 perf test is parallel only 2019-07-03 15:30:41 -05:00
Allen Byrne
ce92a64716 Add missing test 2019-07-03 10:15:07 -05:00
Quincey Koziol
3b594992d6 Add support for GCC9, update warnhist script, and clean up warnings. 2019-07-02 23:43:45 -05:00
Quincey Koziol
2042c775f0 Merge branch 'develop' into feature/update_gcc_flags 2019-06-28 16:13:36 -05:00
Quincey Koziol
d5130bb573 Updated configure & CMake compiler flags for GCC 8.x, along with corresponding
changes to warnhist script (and some extra improvements for condensing C++
and Java warnings), and fixed a bunch of warnings.
2019-06-28 09:10:43 -05:00
Allen Byrne
e7dd793f42 Remove unused code 2019-06-27 08:00:31 -05:00
Quincey Koziol
1ccbdfee58 Add support for GCC 7.x warnings, update warnhist script to account for them,
clean up warnings.
2019-06-21 10:05:34 -05:00
Allen Byrne
562cd7f3ab Cleanup possible CMake target conflicts 2019-06-19 10:35:55 -05:00
Allen Byrne
e7f16c6f2c HDFFV-10805 Add option to only build shared targets
HDFFV-10805 Add ONLY_SHARED_LIBS option and prefer shared over static
HDFFV-10803 Update FindSZIP.cmake find module
Remove unneeded modules and update java modules
2019-06-18 07:46:25 -05:00
Dana Robinson
0c20c65e2f Added the HDopen work-around on windows to pio_engine.c 2019-03-15 08:45:38 -07:00
Dana Robinson
750b5c2930 Adds _wopen support on Windows so that files with UTF-8 names
can be opened.

Fixes: HDFFV-2714, HDFFV-3914, HDFFV-3895, HDFFV-8237, HDFFV-10413, HDFFV-10691
2019-03-15 00:41:39 -07:00
Allen Byrne
6f71b2cdcf Refactor mpi test names 2019-02-11 12:42:46 -06:00
Allen Byrne
f7bab665bb Distinguish parallel performance tests 2019-02-11 10:53:13 -06:00
Allen Byrne
36e3d1600a Refactor out timeout values 2019-02-06 16:41:58 -06:00