Commit Graph

840 Commits

Author SHA1 Message Date
Dana Robinson
1ae6daaa80 Sync with develop 2020-08-01 09:18:18 -07:00
Allen Byrne
3e628120ce Whitespace changes 2020-05-13 09:20:04 -05:00
Allen Byrne
6108186feb TRILAB-192 - merge changes from develop
Single source, config files, for warnings for both autotools and CMake.
Update CMake libraries, tools, tests to use correct flags.
2020-04-07 09:47:29 -05:00
kmu
7e6fd7e4ad revert type cast 2020-02-28 14:49:40 -06:00
Allen Byrne
9ed096fb39 Merge changes from develop mostly cmake 3.12 minimum version 2020-02-23 11:55:47 -06:00
David Young
5cac69efe8 Merge pull request #2334 in HDFFV/hdf5 from ~DYOUNG/werror:hdf5_1_12-warnings-squashed to hdf5_1_12
* commit 'd42bee368850f0bf47ee3a708e3c5d8b7119a632':
  Squashed commit of the following:
2020-02-04 11:00:46 -06:00
Larry Knox
4475757f93 Merge pull request #2312 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop
* commit '1c812fcd5d475afb7e65ed28d84990f96eefa649':
  Restore fix of test assert fail eror undone by later commit.
2020-01-31 23:03:35 -06:00
David Young
d42bee3688 Squashed commit of the following:
commit ff7a9a34de2fcd78f5d32a1532f3d0e224b20d94
Author: Kimmy Mu <kmu@hdfgroup.org>
Date:   Wed Jan 29 14:12:18 2020 -0600

    Merge pull request #2324 in HDFFV/hdf5 from ~KMU/hdf5:hdf5_1_12 to hdf5_1_12

    * commit '781fa57f6ee816e037dd12fff02d37ff7ec9c2b1':
      pick up missing piece from merge
      Merge pull request #2311 in HDFFV/hdf5 from ~KMU/hdf5:misc to develop
      remove redundent definition
      Merge pull request #2311 in HDFFV/hdf5 from ~KMU/hdf5:misc to develop
      Merge pull request #2311 in HDFFV/hdf5 from ~KMU/hdf5:misc to develop
      Merge pull request #2315 in HDFFV/hdf5 from ~KMU/hdf5:develop to develop
      missing prototype warning
      prototype issue
      Merge pull request #2306 in HDFFV/hdf5 from ~KMU/hdf5:develop to develop
      Merge pull request #2300 in HDFFV/hdf5 from ~KMU/hdf5:squashed_cast to develop
      Merge pull request #2291 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/uninitialized to develop
      Merge pull request #2295 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/float to develop
      Merge pull request #2292 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/prototype to develop
      Merge pull request #2094 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/unused to develop

commit 9f3d808c05d2a3b308f32c958c6671fcac0a432c
Author: David Young <dyoung@hdfgroup.org>
Date:   Wed Jan 29 11:43:55 2020 -0600

    testpar/t_2Gio.c: Fix a typo that I think was introduced by a
            previous warnings PR.  An array element was assigned to
            itself---shape[2]Â =Â shape[2];---instead of being assigned to
            chunk[2].

    fortran/src/H5Pf.c: move conditional compilation controlled by
            H5_NO_DEPRECATED_SYMBOLS outside of a function for readability.

    fortran/src/H5match_types.c: put a variable's declaration under the same
            conditional compilation (H5_FORTRAN_HAVE_C_LONG_DOUBLE) as its
            use.

    For now, skip compilation of some unused debug dump routines in the JNI.
    While I'm in the JNI, delete a set-but-unused variable.

    src/H5Z.c: condition a variable declaration on H5_NO_DEPRECATED_SYMBOLS
            so that it's not declared but unused or vice versa.

    test/cache_common.h: add an #include in to get some symbols we need to
            avoid implicit declaration warnings.

    test/dsets.c: use a more conventional conditional-compilation syntax.

    test/dt_arith.c, test/fillval.c: initialize a bunch of uninitialized
            variables before use.

    test/vfd.c: pass the expected type of `void **` to posix_memalign(3)
            instead of `int **`.

    testpar/t_bigio.c: explicitly compare with 0 instead of using ! when
            "equal to 0?" is the question not "is false?"  Repair some
            indentation while I'm here.

    testpar/testpar.h: repair misaligned line-continuation backslashes in a
            macro that probably should be a function so that we don't have
            to fiddle with the line continuation to begin with.

    tools/src/h5repack/h5repack_main.c: fix some compiler fussing about
            enums.

    tools/test/perform/pio_engine.c: the compiler fusses if you cast a
            function call returning double directly to off_t.  It's ok if
            you cast a variable that's a double to off_t, however.  Write
            and use a new function, sqrto(), to avoid the cast warnings.

commit 43a4b80b21c0329fbc1f9a0e2854795189f0bb50
Author: David Young <dyoung@hdfgroup.org>
Date:   Wed Jan 29 10:47:30 2020 -0600

    Reduce casts of HDcalloc()/HDmalloc() that -Wc++-compat required.

    Reduce gratuitous casts---e.g., (size_t)1.

    Use the right format string for a pointer.

    In the H5C sanity checks, change a "size increase" variable from ssize_t
    (too narrow) to int64_t (wide enough).

    Parenthesize every appearance of `storage` in the macro
    `H5D_CHUNK_STORAGE_INDEX_CHK(storage)` so that you can pass in an
    expression like &sc and it works properly.

    Disallow re-assignment of the `dset` parameter to H5D__chunk_init()
    because it helped assure me that it's safe to replace the repeating
    expression `&dset->shared->layout.storage.u.chunk` with `sc` throughout.

    Replace lengthy expressions such as
    `&dset->shared->layout.storage.u.chunk` with `sc` throughout several
    functions in H5Dchunk.c ISTR that the compiler warned that `sc` was
    declared but unused in a couple of functions, and then I found that `sc`
    could be used in many places.  Maybe the disused `sc` appeared because a
    bunch of code was copied and pasted, I don't know.  Anyway, it's a lot
    tighter code now that I use `sc`.

    In H5D__chunk_update_old_edge_chunks() and H5D__chunk_delete()
    I actually expand `sc` and another temporary variable, `pline`,
    because they're used only in !defined(NDEBUG) code.  This squashes
    unused-variable warnings in the defined(NDEBUG) configuration.

    Don't drop the `volatile` qualification with a cast in
    tools/src/h5import/h5import.c.

commit 035bfa0769a4012881fc659b673bacf44d146537
Author: David Young <dyoung@hdfgroup.org>
Date:   Tue Jan 28 20:35:28 2020 -0600

    Reduce differences between my -Werror branch and `develop`:

    Rename index -> idx, fileno -> fnumber, fileno -> fno to avoid GCC
    shadowed declaration warnings about index(3).

    Convert #pragma GCC diagnostic push/pop/ignored to the HDF5 library's
    H5_GCC_DIAG_OFF()/H5_GCC_DIAG_ON() macros.
2020-01-31 13:53:26 -06:00
kmu
781fa57f6e pick up missing piece from merge 2020-01-29 13:01:30 -06:00
Kimmy Mu
63d8c003c6 Merge pull request #2311 in HDFFV/hdf5 from ~KMU/hdf5:misc to develop
* commit '406330addf45529ecdd088f4d22e9aab9a03661d':
  rename macro
  change condition
  pick up from Dave's fix
  leave Wswitch-default for later fix
  fix Wredundant-decls, Wswitch-default, Wdeclaration-after-statement, Wsign-compare, Wmisleading-indentation, Wshadow
2020-01-29 12:04:46 -06:00
kmu
46f76d06d7 remove redundent definition 2020-01-28 16:01:52 -06:00
Kimmy Mu
f1cc5cfd7e Merge pull request #2311 in HDFFV/hdf5 from ~KMU/hdf5:misc to develop
* commit '406330addf45529ecdd088f4d22e9aab9a03661d':
  rename macro
  change condition
  pick up from Dave's fix
  leave Wswitch-default for later fix
  fix Wredundant-decls, Wswitch-default, Wdeclaration-after-statement, Wsign-compare, Wmisleading-indentation, Wshadow
2020-01-28 16:01:12 -06:00
Kimmy Mu
d4dedac70f Merge pull request #2311 in HDFFV/hdf5 from ~KMU/hdf5:misc to develop
* commit '406330addf45529ecdd088f4d22e9aab9a03661d':
  rename macro
  change condition
  pick up from Dave's fix
  leave Wswitch-default for later fix
  fix Wredundant-decls, Wswitch-default, Wdeclaration-after-statement, Wsign-compare, Wmisleading-indentation, Wshadow
2020-01-28 15:47:58 -06:00
Kimmy Mu
68c54e69a4 Merge pull request #2315 in HDFFV/hdf5 from ~KMU/hdf5:develop to develop
* commit '3177c89c5b0749ef1294ec60e124bf402246feba':
  fix issues from test fail
2020-01-28 15:08:50 -06:00
kmu
ccae67aefc missing prototype warning 2020-01-28 14:37:46 -06:00
Kimmy Mu
96fbea89e7 Merge pull request #2306 in HDFFV/hdf5 from ~KMU/hdf5:develop to develop
* commit 'a152ffafb322551033adb594112f53836f7eb240':
  fix assert fail
2020-01-27 20:48:13 -06:00
Kimmy Mu
fe75e8f66f Merge pull request #2300 in HDFFV/hdf5 from ~KMU/hdf5:squashed_cast to develop
* commit 'af5c33afabdae2e39bb45eb1b3e9c8366da01145':
  remove unnecessary stuff
  squash cast warning fix
2020-01-27 20:47:06 -06:00
Kimmy Mu
b87a4362a1 Merge pull request #2291 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/uninitialized to develop
* commit '2de0ce0d8ba2fb58fadefc5d718a3c0fedab25c8':
  fix uninitizlized warning
2020-01-27 20:44:23 -06:00
Kimmy Mu
a4f163c7c6 Merge pull request #2295 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/float to develop
* commit '9afaf94bef740f89958a1a8aae369d5f607845f4':
  not use hdf5 private header
  fix float type cmp warning
  fix float type cmp warning
2020-01-27 20:43:34 -06:00
Kimmy Mu
066b874e5a Merge pull request #2094 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/unused to develop
* commit '145ef3ceee20c28a443bd11507c58858bea3f889':
  more cleanup
  change it back
  pick up missing piece
  fix unused related warnings
  removed unused parameter
  more fix and address comments
  remove unsed var,function,macro, etc
2020-01-27 20:39:58 -06:00
Kimmy Mu
d038d85100 Merge pull request #2238 in HDFFV/hdf5 from ~KMU/hdf5:hdf5_1_12 to hdf5_1_12
* commit '48cc850199901c5b67a40183262f4ead975b884f':
  fix test assert fail error
  Merge pull request #2071 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/intel_warnings to develop
  Merge pull request #2234 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/intel_warnings to develop
2020-01-23 19:42:50 -06:00
Allen Byrne
8eb4509468 Merge pull request #2281 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_12 to hdf5_1_12
* commit '6bae11bb5b9adfce55f173b1fe11fefd1081ec27':
  Improved CMake options for tests
2020-01-20 09:27:34 -06:00
Dana Robinson
bb61d33023 Fixed H5Dcreate in testpar/t_2Gio.c 2020-01-19 18:02:39 -08:00
Allen Byrne
6bae11bb5b Improved CMake options for tests 2020-01-19 07:53:46 -06:00
kmu
48cc850199 fix test assert fail error 2020-01-10 10:02:56 -06:00
Kimmy Mu
ad80fae3cc Merge pull request #2071 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/intel_warnings to develop
* commit '0a2bb11b248df6841daabca3970df5d8504adfc7':
  address problems from comments
  fix and address comments
  change according to previous comments
  add missing piece
  remove unnecessary check macro
  fix intel compile warnings
  Revert "fix warnings from Intel compiler"
  Revert "fix warnings and some text alignment"
  Revert "let hdf5 pick up the right compiler in Intel environment"
  Revert "fix issues from previous PR comments"
  Revert "using a different MACRO"
  using a different MACRO
  fix issues from previous PR comments
  let hdf5 pick up the right compiler in Intel environment
  fix warnings and some text alignment
  fix warnings from Intel compiler
2020-01-08 14:06:38 -06:00
Richard Warren
663d6e0118 Merge t_2Gio test into hdf5_1_12. This will eventually be refactored out after merging the test functionality into the testphdf5 test. 2019-12-16 17:00:08 -05:00
Richard Warren
4eeeda3b86 Merge t_2Gio test into hdf5_1_12. This will eventually be refactored out after merging the test functionality into the testphdf5 test. 2019-12-16 16:59:26 -05:00
Jerome Soumagne
49fe497201 Revert "Merge branch 'hdf5_1_12' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into hdf5_1_12"
This reverts commit 9f9336a5bd, reversing
changes made to 437a1919e7.
2019-12-09 12:16:52 -06:00
Richard Warren
0c06cfc6ef Merged HDFFV-10929_2GB_testing to hdf5_1_12 2019-12-06 16:42:36 -05:00
Allen Byrne
01c7a64bb7 Fix MPI test names 2019-10-23 14:53:55 -05:00
Richard Warren
aac6943696 Rename the set/get bigio_count functions. Also add the renamed prototypes to H5private.h. 2019-10-23 14:09:13 -04:00
Richard Warren
ce05c4a62d Added the two missing files from the previous PR as requested by Les 2019-10-15 14:47:10 -04:00
Richard Warren
4284401fde Initial 2GB port from develop to the 1_12 branch 2019-10-15 09:31:24 -04:00
Allen Byrne
b6f9fcaec5 Cleanup whitespace and comments compared to develop 2019-10-02 09:22:11 -05:00
Vailin Choi
62750441cd Add comment to add tests later to verify conflicting values for MPI-specific properties on multiple opens. 2019-09-02 12:59:48 -05:00
Allen Byrne
1efd23ff02 Whitespace and HD prefix changes 2019-08-28 11:11:32 -05:00
Allen Byrne
43ff3fdc33 fix get gethostname for windows 2019-08-28 10:19:03 -05:00
Allen Byrne
a6df73c723 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit 'fb8296371cf45654a9252ed01b635519205da3de':
  Minor tweaks to new H5P MPI code based on code review feedback.
  Fixed a bug in the cache image code that was introduced by the HD changes.
  Added H5Pset/get_mpi_params calls and unified them with the MPI-I/O VFD info in H5FDmpio.c.
2019-08-27 16:56:20 -05:00
Allen Byrne
09d13b3c13 OESS-29 Fix HD prefix in perform and enable test compile 2019-08-27 16:49:10 -05:00
Dana Robinson
477bd6cd77 Merge branch 'develop_minor_pr' into H5Pset_fapl_mpi 2019-08-27 13:28:55 -07:00
Dana Robinson
7dfe176924 Fixed a bug in the cache image code that was introduced by the HD
changes.
2019-08-27 13:26:22 -07:00
Dana Robinson
9a4f86997a Fixed typo from HD changes 2019-08-27 12:20:12 -07:00
Dana Robinson
89928e7c21 Merge branch 'develop' into H5Pset_fapl_mpi 2019-08-27 12:19:03 -07:00
Dana Robinson
3bcbce5538 Added H5Pset/get_mpi_params calls and unified them with the MPI-I/O
VFD info in H5FDmpio.c.
2019-08-26 10:26:31 -07:00
Allen Byrne
ba974c031d OESS-29 Update HD prefix mostly 2019-08-24 14:07:33 -05:00
Quincey Koziol
5d6f27b32b Merge branch 'develop' into shared_file_ptr 2019-08-21 15:36:17 -05:00
Dana Robinson
e747237a9c Removed unnecessary H5S_FRIEND and dead code. 2019-08-20 13:16:20 -07:00
Quincey Koziol
f285c76ef2 First pass of converting H5PB_* routines to use shared file pointers. 2019-08-19 18:48:06 -05:00
Allen Byrne
98c8c6e45b Mostly whitespace in testpar, addl changes for tmp dir 2019-08-15 10:28:40 -05:00