Commit Graph

3548 Commits

Author SHA1 Message Date
Quincey Koziol
02ce7e7386 [svn-r27772] Description:
Clean up warnings, address HDFFV-9524

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial
    (Too minor to require h5committest)
2015-09-14 11:39:09 -05:00
Quincey Koziol
050dd02387 [svn-r27771] Description:
Merge in part of Neil's property list fixes:  Fix a minor memory leak,
add some sanity checks, clean up the code a little, and verify that encoding/
decoding default versions of the property lists works correctly.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial
    (Too minor to require h5committest)
2015-09-14 11:21:31 -05:00
Quincey Koziol
1023374492 [svn-r27768] Description:
Complete revamp of package initialization/shutdown mechanism in the library.
Each package now has a single init/term routine.

    This new way should avoid packages being re-initialized during library
shutdown and is also be _much_ more proactive about giving feedback for
resource leaks internal to the library.

    Introduces a new "module" header file for packages in the library
(e.g src/H5Fmodule.h) which sets up some necessary package configuration macros
for the FUNC_ENTER/LEAVE macros.  (The VFL drivers have their own slightly
modified version of this header, src/H5FDdrvr_module.h)

    Also cleaned up a bunch of resources leaks all across the library and tests,
along with addressing many warnings, as I encountered them.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial & parallel
    Linux/64 3.10.x (kituo) w/serial & parallel
    Linux/64 2.6.x (ostrich) w/serial
2015-09-13 22:58:59 -05:00
Dana Robinson
122bf84bb3 [svn-r27760] Brought r27631-27755 over from the trunk.
tested on: jam
2015-09-11 09:08:04 -05:00
Allen Byrne
4b748365df [svn-r27748] Correct name of target 2015-09-10 09:19:43 -05:00
Allen Byrne
8e3464d2d0 [svn-r27747] Correct name of target 2015-09-10 09:18:54 -05:00
Allen Byrne
10da31a926 [svn-r27745] Merge trunk revision 27744 2015-09-10 09:11:17 -05:00
Quincey Koziol
26baf1a805 [svn-r27710] Description:
Bring the "metadata rings" code from its branch (mdc_rings_v2) to the trunk.
(This change will support the page buffering feature)

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial & parallel
    (h5committest forthcoming)
2015-09-09 01:33:03 -05:00
Allen Byrne
7860f3f5b6 [svn-r27668] Increase timeout for objcopy 2015-09-03 09:48:18 -05:00
Neil Fortner
c839ed3383 [svn-r27646] Add version number to VDS global heap object encoding.
Fix handling of layout version number.
Other minor fixes/cleanup.
NOTE: This commit changes the file format for VDS, all files must be
re-generated.

Tested: ummon
2015-09-01 08:03:33 -05:00
Dana Robinson
59aa015d9f [svn-r27638] Merged r27500-27631 from trunk. 2015-08-31 23:36:17 -05:00
Quincey Koziol
2c91cbecc6 [svn-r27630] Description:
Bring in changes from the trunk, through r27628.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial
    (h5committest not required on this branch)
2015-08-31 15:14:57 -05:00
Allen Byrne
81ca9e4c79 [svn-r27627] Change hardcoded HDF5TESTEXPRESS value to use a CMake variable HDF_TEST_EXPRESS. 2015-08-31 15:08:56 -05:00
Dana Robinson
c226e58005 [svn-r27626] Various minor warning fixes before major SWMR and VDS merges.
gcc 4.9.2 was used to create the warning list

- implicit casts
- shadowed variables
- various enum issues
- other minor fixes (comments, unused macros, etc.)

Tested on: h5committest
2015-08-31 14:04:23 -05:00
Scot Breitenfeld
e6f9fc5f7f [svn-r27625] Added preprocessor commands for PGI compiler.
tested: h5committest
2015-08-31 13:49:17 -05:00
Neil Fortner
1d3a7ec651 [svn-r27606] Merge revisions 27593 through 27605 from trunk to vds branch.
Tested: ummon
2015-08-28 15:03:07 -05:00
Neil Fortner
1847391fc5 [svn-r27605] Fix potential memory error when using a dataspace that was created with
H5Screate and had its extent set by H5Sextent_copy.

Tested: jam, ostrich (h5committest)
2015-08-28 14:43:03 -05:00
Neil Fortner
c365b9a59f [svn-r27593] Merge revisions 27453 through 27592 from trunk to vds branch.
Tested: ummon
2015-08-27 12:06:54 -05:00
Allen Byrne
c491cf01bf [svn-r27590] Fix typo 2015-08-27 08:41:32 -05:00
Dana Robinson
606c16e111 [svn-r27587] Added a new API call (H5is_library_threadsafe) to the library. This call can
be used to determine at runtime if the library was built with thread-safety.

Fixes HDFFV-9496

Tested on: h5committest
2015-08-26 12:05:57 -05:00
Allen Byrne
6635d4c003 [svn-r27586] HDFFV-9497: Add back ALLOW_UNSUPPORTED OPTION.
Added new option SKIP_HDF5_FORTRAN_SHARED
2015-08-26 11:48:42 -05:00
Dana Robinson
2e6100fb23 [svn-r27572] Removed VMS-specific code from the library.
The only remaining code consists of a few floating-point tests
that rely on pre-generated and checked-in VMS files. These have
been left alone, even though they will not be possible to
recreate, since testing VMS float behavior is still important.

Tested on: h5committest
2015-08-24 15:19:39 -05:00
Jerome Soumagne
ab7d724ffd [svn-r27548] Revert r27545 2015-08-21 17:44:22 -05:00
Neil Fortner
32bf83f1cf [svn-r27546] Add tests for H5O__dset_bh_info (H5Oget_info) and unlimited selections in a
region reference.

Tested: ummon
2015-08-21 14:57:29 -05:00
Jerome Soumagne
7ce2d52cf6 [svn-r27545] Add first support for _Bool and make hbool_t a "real" _Bool if available
Fix tests accordingly
2015-08-21 13:52:30 -05:00
Neil Fortner
1821b64d49 [svn-r27543] Add tests to cover remaining code coverage assertions in H5Shyper.c.
Add more tests for unlimited selections.
Fix bug related to empty unlimited source dataset.

Tested: ummon
2015-08-20 17:18:52 -05:00
Neil Fortner
e3bea91686 [svn-r27538] Add tests to cover remaining code coverage assertions in src directory except
for those in H5Doh.c and H5Shyper.c.

Tested: ummon
2015-08-20 11:38:05 -05:00
Neil Fortner
6909d2033f [svn-r27527] Add tests to hit code coverage assertions in H5Olayout.c.
Fix issue in VDS delete routine.

Tested: ummon
2015-08-19 11:21:27 -05:00
Neil Fortner
69e2f53edb [svn-r27520] Add new test for all 3 selection types in the same VDS.
Minor cleanup in the tests.

Tested: ummon
2015-08-18 15:45:46 -05:00
Scot Breitenfeld
d06fee7bd2 [svn-r27517] Removed all perl scripts from configure.
Tested: h5committest
2015-08-17 16:12:03 -05:00
Dana Robinson
c27d180848 [svn-r27507] Merge of r27237-27500 from the trunk.
Tested w/ h5committest

NOTES: - The manifest may still be messed up.
       - Cmake fails since the dual binary work needs to be merged with
         this repo's CMake externals.
2015-08-14 14:58:54 -05:00
Neil Fortner
cefda2ef0c [svn-r27505] Add support for H5Dset_extent for VDS.
Add tests for this.
Other bug fixes/cleanup

Tested: Kubuntu 64 (home computer)
2015-08-13 21:55:15 -05:00
Neil Fortner
1ba3706640 [svn-r27498] Add support for I/O after reopening a VDS with unlimited and/or printf mappings
without calling H5Dget_space first.
Add tests for this.
Other minor fixes/cleanup.

Tested: ummon
2015-08-12 13:19:48 -05:00
Scot Breitenfeld
caf0e7692a [svn-r27493] Trying again to merge the F2003_v1.10 branch to the trunk.
Tested: h5committest --PASSED--
2015-08-11 09:35:30 -05:00
Scot Breitenfeld
3b4696ccd1 [svn-r27489] reverted merge of branch 2015-08-10 20:22:33 -05:00
Scot Breitenfeld
415eb5512b [svn-r27488] Merged the F2003_v1.10 branch to the trunk.
Tested: h5committest
2015-08-10 20:00:33 -05:00
Allen Byrne
1900d6a65d [svn-r27485] Change ExpressTest from default of 1 to 2. 2015-08-10 12:34:11 -05:00
Neil Fortner
0c4ec00cba [svn-r27481] Add support for offset selections passed to H5Pset_virtual.
Add test for this.

Tested: ummon
2015-08-07 15:06:56 -05:00
Neil Fortner
98f947ceae [svn-r27479] Add checking for invalid inputs to H5Dset_virtual: point selections, incorrect
numbers of elements selected, incorrect "slice" through limited dimensions,
incorrect number of printf substitutions.
Patch source selection space extent with bounds of selection if extent is
unknown before returning via H5Pget_virtual_srcspace.
Write updated VDS dataspace to file when it changes due to unlimited selections.
Other minor fixes/cleanup.

Tested: ummon
2015-08-07 11:15:39 -05:00
Scot Breitenfeld
a9bef45c75 [svn-r27470] svn merge -r27425:27460 https://svn.hdfgroup.uiuc.edu/hdf5/trunk 2015-08-05 16:35:30 -05:00
Allen Byrne
9e2434625d [svn-r27469] Merge from trunk with dual-binary CMake code.
Tested: local linux with CMake
2015-08-05 16:01:07 -05:00
Allen Byrne
4d0187a483 [svn-r27465] Merge dual-binary CMake changes 2015-08-05 10:56:58 -05:00
Dana Robinson
ec5d13d65b [svn-r27460] Minor code cleanup in test/trefer.c
- Fixed an out-of-range char assignment.

- Added a couple of malloc() casts.

Tested on: jam (minor change, tests only)
2015-08-03 22:00:45 -05:00
Dana Robinson
117b936032 [svn-r27459] Merge of 27411 from revise_chunks.
Renamed a few "h5tri_t extended" variables to "h5tri_t was_extended".
Apparently, "extended" is a typedef name someplace in the headers used
on Solaris, which causes potentially confusing warnings to be emitted.

Tested on: h5committest
           Solaris w/ Solaris Studio (emu)
2015-08-03 21:19:25 -05:00
Neil Fortner
bfd13897f6 [svn-r27453] Merge revisions 27418 through 27452 from trunk to vds branch.
Tested: ummon
2015-08-03 11:12:19 -05:00
Albert Cheng
ac5a796db2 [svn-r27428] Bug fix: DAILYTEST-170
Description:
    XL compilers in ostrich (PowerPC64 linux) fail in test/dt_arith
    because of the removal of the LLONG_TO_LDOUBLE_CORRECT (removed in
    r26625) and LDOUBLE_TO_LLONG_ACCURATE (removed in r26623).

Solution:
    Reverse revisions
	r26623: bring back LDOUBLE_TO_LLONG_ACCURATE configure macro
	r26625: bring back LLONG_TO_LDOUBLE_CORRECT configure macro
	r26627: bring back WANT_DATA_ACCURACY configure macro which is
	    used together with the above two macros. This also brings
	    back the enable-dconv-accuracy configure option.

Tested:
    h5committested.
    Also tested in ostrich using the XL compilers.
2015-07-24 02:04:52 -05:00
Scot Breitenfeld
ed0bae78a0 [svn-r27426] svn merge -r27377:27425 https://svn.hdfgroup.uiuc.edu/hdf5/trunk 2015-07-22 17:09:05 -05:00
Neil Fortner
49076d6d22 [svn-r27425] Implement support for H5Pequal with VDS properties.
Testing for H5Pequal with VDS.

Tested: ummon
2015-07-22 16:41:18 -05:00
Neil Fortner
6bb109bf6d [svn-r27424] Implement support for h5debug for VDS.
Implement support for H5Pencode/decode with VDS properties.
Testing for H5Pencode/decode with VDS.
Relax assertion check for number of elements written to buffer as we do not
check for overlaps in mappings.
Other minor fixes/cleanup.

Tested: ummon
2015-07-22 13:36:30 -05:00
Neil Fortner
a8fc7eeaec [svn-r27420] Fixed VDS test to handle the family driver correctly.
Tested: ummon
2015-07-21 12:14:26 -05:00