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394 Commits

Author SHA1 Message Date
Quincey Koziol
ba087ce2b5 Clean up private / package / static namespace issues (function naming, which 
header file, FUNC_ENTER / LEAVE, etc).  Removed remaining personal email
addresses from library source code (still needs cleaned from other directories).
Misc. warning, style, and whitespace cleanup.
 2020-08-22 14:00:44 -05:00
Dana Robinson
1ae6daaa80 Sync with develop 2020-08-01 09:18:18 -07:00
Quincey Koziol
ab9f73e4db Reduce overhead for H5open, which is involved in the public symbols like H5T_NATIVE_INT, etc. 2020-06-18 15:20:57 -05:00
David Young
2ba97e40cd Make sure that H5TS_thread_id() is available as either a function or a macro in 
all configurations.

Previously it was neither declared nor defined in --disable-threadsafety
builds.  The compiler's warning got lost in the noise---I first saw the issue
because my -Werror branch stopped compiling cold---and the tests still linked
and ran.
 2020-05-11 10:22:07 -05:00
David Young
8aa74137dd Use a naked pthread_self() call in the HDF5 thread wrappers. 2020-05-11 10:21:59 -05:00
David Young
763d7a778e Replace pthread_self_ulong() with H5TS_thread_id(). The POSIX Threads 
implementation ought to be portable to any system that has POSIX
Threads.  On Windows, I use the same API call as before.
 2020-05-06 15:37:14 -05:00
Allen Byrne
a29f9e8451 Merge changes from develop to fix various issues 2020-01-30 14:33:47 -06:00
Kimmy Mu
d4dedac70f Merge pull request #2311 in HDFFV/hdf5 from ~KMU/hdf5:misc to develop 
* commit '406330addf45529ecdd088f4d22e9aab9a03661d':
  rename macro
  change condition
  pick up from Dave's fix
  leave Wswitch-default for later fix
  fix Wredundant-decls, Wswitch-default, Wdeclaration-after-statement, Wsign-compare, Wmisleading-indentation, Wshadow
 2020-01-28 15:47:58 -06:00
kmu
3509872fe4 prototype issue 2020-01-27 21:15:19 -06:00
Kimmy Mu
066b874e5a Merge pull request #2094 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/unused to develop 
* commit '145ef3ceee20c28a443bd11507c58858bea3f889':
  more cleanup
  change it back
  pick up missing piece
  fix unused related warnings
  removed unused parameter
  more fix and address comments
  remove unsed var,function,macro, etc
 2020-01-27 20:39:58 -06:00
David Young
a38f42c1f0 For portability, insulate the HDF5 library from some system macros. 2019-12-19 15:03:40 -06:00
Dana Robinson
957940befb Yanked -Wc++-compat from the flags used to build the C library in both 
the Autotools and CMake.
 2019-12-16 08:13:47 -08:00
Allen Byrne
310b42e35a HDFFV-10876 Merge from develop 2019-12-09 15:44:38 -06:00
Jerome Soumagne
49fe497201 Revert "Merge branch 'hdf5_1_12' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into hdf5_1_12" 
This reverts commit 9f9336a5bd, reversing
changes made to 437a1919e7.
 2019-12-09 12:16:52 -06:00
Richard Warren
0c06cfc6ef Merged HDFFV-10929_2GB_testing to hdf5_1_12 2019-12-06 16:42:36 -05:00
Richard Warren
ca54c5f06e Fixed the H5_set_bigio_count prototype by adding a missing input argument. 2019-10-23 14:45:55 -04:00
Richard Warren
aac6943696 Rename the set/get bigio_count functions. Also add the renamed prototypes to H5private.h. 2019-10-23 14:09:13 -04:00
Richard Warren
ce05c4a62d Added the two missing files from the previous PR as requested by Les 2019-10-15 14:47:10 -04:00
Dana Robinson
3bcbce5538 Added H5Pset/get_mpi_params calls and unified them with the MPI-I/O 
VFD info in H5FDmpio.c.
 2019-08-26 10:26:31 -07:00
Dana Robinson
bd8da502cf Some refactoring prior to implementing new H5P MPI functions. 
* Macro cleanup and obvious warning fixes in parallel code.
* Moved H5FD comm and info dup/free wrapper code to a new H5mpi.c file
  and separated it to deal with each MPI type separately.
 2019-08-14 16:22:06 -07:00
Dana Robinson
aeb145428f Merge pull request #1860 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:map_api_merge to develop 
* commit 'd95745235a468b17f697843adb3d0e54bd919893':
  Updated h5trav.c to emit output that doesn't require ddl changes for map support.
  Fixed Map API CMake option
  Renamed H5Mdelete_key to H5Mdelete and H5Mset to H5Mput.
  Added the map (H5M) API
 2019-08-13 12:57:19 -05:00
M. Scot Breitenfeld
df7ce9a5c9 Added ifdef for intel compilers, __GNUC__ has to be defined for header files which use it to work with intel compilers. This gives a warning for intel compiler about fallthrough, so added a check not to include fallthrough if using intel compilers. 2019-08-13 10:10:23 -05:00
Dana Robinson
5b6bd7c922 Added the map (H5M) API 2019-08-13 01:36:42 -07:00
M. Scot Breitenfeld
c56509b490 Added gcc conditional for __attribute__((fallthrough)), removes 34 warnings on theta (10% of warnings). 2019-08-08 16:29:57 -05:00
Quincey Koziol
1ccbdfee58 Add support for GCC 7.x warnings, update warnhist script to account for them, 
clean up warnings.
 2019-06-21 10:05:34 -05:00
Dana Robinson
5c80d3d912 - Added H5MMprivate.h #includes where needed 
- Added casts to quiet H5MM_memcpy warnings
- Removed char * casts from HDmemcpy
 2019-03-16 16:02:06 -07:00
Dana Robinson
32ea4e72f1 Merge branch 'develop' into c_stdlib_posix_call_cleanup 2019-02-19 14:49:20 -08:00
Dana Robinson
f833001e39 Updated sec2, log, and core VFDs to use pread/pwrite when 
available (can be controlled via a configure/CMake option)
 2019-01-30 17:32:40 -08:00
Dana Robinson
536a32c59b C and POSIX call cleanup 2019-01-10 17:51:42 -08:00
Dana Robinson
b0457117d8 Further va_list improvements. 2018-12-17 11:40:10 -08:00
Quincey Koziol
247a6afb7e Fix plugin code from referencing invalid key ID value, and also switch from 
strtok() to strtok_r() to avoid possible interference with / to application
use of strtok().
 2018-12-13 17:31:00 -06:00
Quincey Koziol
0df6e44a6e Squashed commit of private branch changes to support stackable VOL plugins. 
modified:   test/dsets.c
 2018-10-24 23:52:47 -05:00
Dana Robinson
e962df1591 VOL FEATURE 2018-10-10 08:10:15 -07:00
Dana Robinson
eb78fd8832 Develop normalization with vol_integration. 
Mostly peripheral things like the tools and wrappers,
with just enough core library code to support that.
 2018-09-18 22:57:37 -07:00
Dana Robinson
680cf4d946 Removed 'VOL' versions of FUNC_ENTER macros as well as empty functions 
orginally intended to support the full SWMR feature.
 2018-09-18 14:10:14 -07:00
Binh-Minh Ribler
ec31438afd Fixed HDFFV-10404 
Description:
    Applied the typo fixes from user's report.
    The previous pull request couldn't be merged because it was too old,
    and it was too complicated for me to resolve conflicts.
Platform tested:
    Linux/64 (jelly) - very minor
 2018-07-13 13:40:22 -05:00
Quincey Koziol
f38864920d Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into merge_func_enter_vol 
Plus initial steps toward merging API context push into FUNC_ENTER_API* macros
 2018-03-18 18:36:49 -05:00
Quincey Koziol
4a17aff408 Add API context interface and use it throughout the library. 2018-03-15 16:54:30 -05:00
Dana Robinson
c0021b348d Normalization with VOL integration branch. 2017-11-30 09:56:43 -08:00
Dana Robinson
734aebc395 Rework of the POSIX file open permissions and macros to clean up 
HDopen() calls.

Also fixed a minor const warning in the core VFD.
 2017-04-28 18:13:22 -04:00
Dana Robinson
d3b664b6a7 Changed the Windows POSIX open() file permissions to be correct 
according to MSDN. Partial fix for HDFFV-9630.
 2017-04-28 08:11:29 -07:00
Larry Knox
89fbe00dec Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to hdf5_1_10 
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
  Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
  Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
  Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
  Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
 2017-04-25 16:05:36 -05:00
Allen Byrne
24b11709af Update cmake pubconf to match autotools and add strtoll checks 2017-03-16 12:59:20 -05:00
Dana Robinson
441c8ea43a Added text to the function check macros so that a more helpful 
error message is emitted when there is a problem.
 2016-12-12 18:25:34 -05:00
Quincey Koziol
3b0c2b24da Bring over support for retrying metadata cache entry loads, along with all the 
supporting metadata cache callback changes, etc.
 2016-11-20 04:24:57 -08:00
Dana Robinson
faea627254 [svn-r30224] Added HDprintf() macro that uses HDfprintf w/ stdout. 
Tested on: 64-bit Ubuntu Linux 16.04 LTS w/ gcc 5.4.0
           Autotools serial
 2016-07-27 11:56:42 -05:00
Quincey Koziol
83724bd787 [svn-r30113] Description: 
Clean up warnings (from 2774 -> 1560, with my standard debug build)

Tested on:
    MacOSX/64 10.11.5 (amazon) w/serial, parallel & production
    (h5committest forthcoming)
 2016-06-28 16:53:48 -05:00
Quincey Koziol
dd6c8994c0 [svn-r30017] Description: 
Bring warning cleanusp in r29990, 29993, 29997, 29999, 30004 from
revise_chunks branch to trunk.

Tested on:
    MacOSX/64 10.11.5 (amazon) w/serial, parallel & production.
    (h5committest forthcoming)
 2016-06-05 19:45:37 -05:00
Dana Robinson
8f874a5010 [svn-r29395] Corrected parentheses in floating-point compare macros. 
Corrected H5_EB and H5_PB macros.

Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1
           autotools serial w/ Java, Fortran, & C++
 2016-03-12 04:23:51 -05:00
Dana Robinson
19a8216bd5 [svn-r29182] Re-commit of HDFFV-8740 fix, which adds the ability to configure 
external dataset storage path behavior.

This check-in fixes a bug in the original check-in where the
external path stored in the file struct was not copied on reopen
causing subsequent dataset operations to fail.

Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
           autotools serial w/ fortran and C++
           autotools parallel (MPICH 3.1.4) w/ fortran
 2016-02-22 16:40:03 -05:00