Commit Graph

222 Commits

Author SHA1 Message Date
Neil Fortner
2811133914 [svn-r26293] Implement patching of virtual dataspace extent in mapping dataspaces when
opening virtual dataset.  Add tests for this.

Tested: ummon
2015-02-24 14:54:48 -05:00
Neil Fortner
1199ab1f48 [svn-r26198] INCOMPLETE, UNWORKING CODE
Commit progress through 1610 CST 2/17/15
2015-02-17 16:11:22 -05:00
Quincey Koziol
89e2c8822d [svn-r25766] Description:
Revert r25273, 25283 & 25439 (the hyperslab improvement changes).  They
are buggy and it's taking me a long time to correct the problem.  I'll check
in a revised form of the changes when I've got them straightened out.

Tested on:
    Mac OSX 10.10.0 (amazon) w/gcc 4.9.x, C++, FORTRAN
    Linux 2.6.x (jam) w/parallel
2014-11-03 15:13:25 -05:00
Quincey Koziol
4ccb865c70 [svn-r25273] Description:
Bring in Chao/Neil/my changes to optimize hyperslab selection operations
further, along with 3 new public API routines: H5Scombine_hyperslab(),
H5Sselect_select() and H5Scombine_select(), along with many minor cleanups to
the code and fixing a few compiler warnings.

Tested on:
    Mac OSX/64 10.9.3 w/gcc 4.9.x and parallel w/OpenMPI
    (h5commttest forthcoming)
2014-06-13 01:23:57 -05:00
Quincey Koziol
2e4302818a [svn-r24864] Description:
Remove all traces of MPI-POSIX VFD and GPFS detection/code.

    Remove remaining traces of stream VFD.

    Remove testpar/t_posix_compliant test (it's not actually verifying anything).

    Clean up H5D__mpio_opt_possible() further.

    Moved environment variable that disables MPI collective operations into
MPI-IO VFD (instead of it being in src/H5S.c).

    A few other small code cleanups.

Tested on:
    Mac OSX/64 10.9.2 (amazon) w/parallel & serial
2014-03-21 18:02:24 -05:00
Quincey Koziol
ac0ef34a41 [svn-r24769] Description:
Check in Mohamad's changes to support collective I/O on point selections,
along with some other minor cleanups.

Tested on:
    Mac OSX/64 10.9.2 (amazon) w/parallel & serial
    (h5committest forthcoming)
2014-03-07 14:12:20 -05:00
Quincey Koziol
7fe87a2472 [svn-r19153] Description:
Bring changes on Coverity branch back to trunk:

r19040:
Fixed coverity #440 - NULL check after dereference.  We moved the NULL check up
into the IF block and changed it to assertion.

r19041:
Maintenance: Addressed Coverity issues 441 and 449 by initializing proper
variables

r19042:
In function H5O_chunk_protect (H5Ochunk.c):
 - Initialize H5O_chunk_proxy_t pointers chk_proxy and ret_value.
 - Free chk_proxy on error.

r19043:
Addressed coverity issues 442 - 448 by initializing pointers to NULL.

Tested on:
    Mac OS X/32 10.6.4 (amazon) w/debug & production
    (Too minor to require h5committest)
2010-07-29 14:07:26 -05:00
Quincey Koziol
a67794b1bc [svn-r19099] Description:
Fix const pointer issues for projection construction routine and also
bump time before alarm kicks in to terminate a test from 20 minutes to 30
minutes, to give the PGI compiler tests w/debugging enabled a chance to finish.

Tested on:
	Mac OS X/32 10.6.4 (amazon) w/debug
	Linux/32 2.6.18 (jam) w/PGI & debug
2010-07-19 12:53:10 -05:00
Quincey Koziol
f82774c0d5 [svn-r19092] Description:
Bring "shape same" changes from LBL branch to trunk.  These changes
allow shapes that are the same, but projected into dataspaces with different
ranks to be detected correctly, and also contains code to project a dataspace
into greater/lesser number of dimensions, so the I/O can proceed in a faster
way.

	These changes also contain several bug fixes and _lots_ of code
cleanups to the MPI datatype creation code.

	Many other misc. code cleanup are included as well...

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                in production mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
        Mac OS X/32 10.6.3 (amazon) in debug mode
        Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
                in production mode
2010-07-19 00:05:45 -05:00
Quincey Koziol
1bc07c6aae [svn-r18031] Description:
Bring r18030 from merge_metadata_journaling branch to trunk:

	Bring "brush clearing" changes (whitespace & style issues, mostly) from
metadata_journaling branch to the "merging" branch, to converge the trunk and
the metadata_journaling branch.

	Also, some other minor cleanups along the way.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.6.2 (amazon) in debug mode
        Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe,
                in production mode
2009-12-17 17:21:08 -05:00
Quincey Koziol
c243e1e134 [svn-r17148] Description:
Refactor how chunked dataset information is computed, moving it earlier and
avoiding more recomputation.

Tested on:
    FreeBSD/32 6.3 (duty) in debug mode
    FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
    Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
        in debug mode
    Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
        w/C++ & FORTRAN, in production mode
    Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
        w/szip filter, in production mode
    Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
        in production mode
    Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
    Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
    Mac OS X/32 10.5.7 (amazon) in debug mode
    Mac OS X/32 10.5.7 (amazon) w/C++ & FORTRAN, w/threadsafe,
        in production mode
2009-07-02 17:34:20 -05:00
Quincey Koziol
fc6f3e1650 [svn-r16986] Description:
Clean up formatting & error reporting.

Tested on:
    FreeBSD/32 6.3 (duty) in debug mode
    FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
    Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
        in debug mode
    Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
        w/szip filter, in production mode
    Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
        in production mode
    Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
    Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
    Mac OS X/32 10.5.6 (amazon) in debug mode
    Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe,
        in production mode
2009-05-27 13:08:46 -05:00
Quincey Koziol
771bae8888 [svn-r15131] Description:
Finish omnibus chunked dataset I/O refactoring, to separate general
actions on chunked datasets from actions that are specific to using the v1
B-tree index.

	Cleaned up a few bugs and added some additional tests also.

Tested on:
        FreeBSD/32 6.2 (duty) in debug mode
        FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Mac OS X/32 10.5.2 (amazon) in debug mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
2008-06-03 14:44:12 -05:00
Scot Breitenfeld
aec106e324 [svn-r14903] Undoing change committed in r14902. 2008-04-30 14:51:13 -05:00
Scot Breitenfeld
5773fd34bc [svn-r14902] Merged fortran_1_8 branch changes r14505:14901 into the trunk. New fortran wrappers added. 2008-04-30 14:23:26 -05:00
Quincey Koziol
495ca9c7bb [svn-r14860] Description:
Omnibus raw data I/O revisions, with wide-ranging changes and
refactoring, in order to prepare for implementing "fast append" feature.

	These changes remove the majority of the code duplication for raw data
I/O which has crept in over the last ten years and introduces a more object-
oriented design for operating on different types of dataset storage.

	Chunked storage no longer has it's own I/O routines, it is now handled
as either contiguous (if chunk is not pulled into the cache) or compact (if the
chunk is cached in memory).

	No bug or feature changes, at least intentionally... :-)

Tested on:
        FreeBSD/32 6.2 (duty) in debug mode
        FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Mac OS X/32 10.5.2 (amazon) in debug mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
2008-04-24 10:03:41 -05:00
Quincey Koziol
e622f33515 [svn-r14420] Description:
Correct the prototype for H5Sselect_elements() to take an 'hsize_t *' for
the coordinates, instead of 'hsize_t **'.

Tested on:
    Mac OS X/32 10.5.1 (amazon)
2008-01-15 16:10:42 -05:00
Quincey Koziol
bffc42f6ac [svn-r14356] Description:
Refactor work for bug #956 to simplify a bit and to cover some corner
cases.

Tested on:
        FreeBSD/32 6.2 (duty) in debug mode
        FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Mac OS X/32 10.4.10 (amazon) in debug mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
2007-12-20 17:37:21 -05:00
Raymond Lu
8377804436 [svn-r14354] Bug fix for #956 where the element coordinates went wrong for dataspace selection. Added a test
for it, too.  This round of checkin isn't well tarnished yet.  I'll come back to work on Jan. 8. I'll revise it then. 

Tested it on kagiso, smirom, linew.
2007-12-20 16:09:58 -05:00
Quincey Koziol
74c005fdb2 [svn-r14326] Description:
- Keep skip list for tracking chunks with dataset (instead of creating/
        destroying it for each I/O operation) and just delete the skip list
        nodes.
    - Avoid computations for normalizing selection offset when offset not set.
    - Avoid updating object modification time twice during dataset creation.
    - Avoid updating dataset layout message (and object modification time)
        until dataset is closed.

Tested on:
        FreeBSD/32 6.2 (duty) in debug mode
        FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Mac OS X/32 10.4.10 (amazon) in debug mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
2007-12-06 14:24:30 -05:00
Quincey Koziol
765f0159ff [svn-r14307] Description:
- Extracted common code from H5D_select_read/H5D_select_write into single
        routine (H5D_select_io) and made H5D_select_read/H5D_select_write
        "gateway" routines, passing I/O buffer to operate on in "op" struct.
    - Create optimized pathway in H5D_select_io for I/O operations on single
        elements.
    - Make "get linear offset of first element" callback for each type of
        selection (used in "optimized pathway", above)

Tested on:
        FreeBSD/32 6.2 (duty) in debug mode
        FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Mac OS X/32 10.4.10 (amazon) in debug mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
2007-11-29 13:44:07 -05:00
Quincey Koziol
3aa3af4fb6 [svn-r14278] Description:
- Remember # of elements in file selection, instead of querying more than
        once
    - Handle building chunk map for single element as special case

Tested on:
        FreeBSD/32 6.2 (duty) in debug mode
        FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Mac OS X/32 10.4.10 (amazon) in debug mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
2007-11-20 17:12:52 -05:00
Quincey Koziol
6a5559be99 [svn-r14271] Description:
Avoid copying maximum dimensions for temporary dataspaces used for
describing chunks during raw data I/O.

Tested on:
        FreeBSD/32 6.2 (duty) in debug mode
        FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Mac OS X/32 10.4.10 (amazon) in debug mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
2007-11-20 05:50:18 -05:00
Quincey Koziol
d3ee3988b6 [svn-r14192] Description:
Deprecate H5Dextend in favor of H5Dset_extent (without using API
versioning, due to changed behavior) and switch internal usage to H5Dset_extent

Tested on:
        FreeBSD/32 6.2 (duty) in debug mode
        FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Mac OS X/32 10.4.10 (amazon) in debug mode
2007-10-08 10:26:02 -05:00
Quincey Koziol
94153c6c3d [svn-r14148] Description:
Add H5Rget_obj_type() to the API versioning and switch internal
routines to use H5Rget_obj_type2()

	Misc. other code cleanups, etc.

Tested on:
        FreeBSD/32 6.2 (duty)
        FreeBSD/64 6.2 (liberty)
        Linux/32 2.6 (kagiso)
        Linux/64 2.6 (smirom)
        AIX/32 5.3 (copper)
        Solaris/32 2.10 (linew)
        Mac OS X/32 10.4.10 (amazon)
2007-09-13 20:52:38 -05:00
Quincey Koziol
712c226038 [svn-r14010] Description:
Fix problem with dataspace messages where the version of the format
for a dataspace message could depend on the "use the latest format" flag from
the file after it was initially created.

	Also, move debuging routine into separate file.
	
Tested on:
        FreeBSD/32 6.2 (duty)
        FreeBSD/64 6.2 (liberty)
        Linux/32 2.6 (kagiso)
        Mac OS X/32 10.4.10 (amazon)
        Solaris/32 2.10 (linew)
2007-07-24 16:43:59 -05:00
Quincey Koziol
40160d4d74 [svn-r13870] Description:
Fix writing variable-length datatype fill values for contiguous dataset
storage

Tested on:
    Mac OS X/32 10.4.9 (amazon)
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2007-06-15 12:52:25 -05:00
Quincey Koziol
5279ef2f48 [svn-r13825] Description:
Incremental step forward in fixing problems with fill values that have 
a variable-length daattype.  This set of changes fixes problems with the copying
the property list values.

tested Tn:
	Mac OS X/32  10.4.9 (amazon)
2007-05-31 15:33:19 -05:00
Quincey Koziol
e0ae782d27 [svn-r13390] Description:
Make H5O_protect/H5O_unprotect use pinned cache entries instead of
protected entries (allowing the object header routines to be semi-reentrant).

Tested on:
	FreeBSD 6.2 (duty)
2007-02-26 13:18:08 -05:00
Albert Cheng
ed7d456e51 [svn-r13253] Updated all C and C++ style source code files with the THG copyright notice.
Tested platform:
Kagiso only since it is only a comment block change.  If it works in one
machine, it should work in all, I hope.  Still need to check the parallel
build on copper.
2007-02-07 09:56:24 -05:00
Quincey Koziol
7c733b0afb [svn-r13223] Description:
Move datatype messages into new shared message method interface

    Clean up various formatting & compiler warnings

    Minor optimizations

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2007-01-30 13:43:28 -05:00
Quincey Koziol
9f39e59d91 [svn-r13012] Description:
Refactor object header code to separate process of creating an object
header message from the process of writing to an existing one.

    Start renaming operations that deal with object header messages to have
"H5O_msg_" prefix...

Tested on:
    Mac OS X/32 10.4.8 (amazon)
    FreeBSD/32 4.11 (sleipnir)
    Linux/32 2.4 (heping)
    AIX/32 5.? (copper)
2006-12-03 10:29:41 -05:00
Quincey Koziol
27c0fb2220 [svn-r13002] Description:
Fix problem with copying objects when the dataset to copy has an "older"
version of the layout message and needs to compute the size of the dataset's
storage after the dataspace information is available.

    Minor random cleanups also...

Tested on:
    FreeBSD/32 4.11 (sleipnir)
    Too minor/weird to test w/h5committest...
2006-11-30 16:38:30 -05:00
Quincey Koziol
d579d6aa5e [svn-r11899] Purpose:
Bug fix & new feature

Description:
    Support variable-length datatypes in compact data storage and chunked
data storage, along with attributes.

    Bug fix on the H5T_vlen_set_loc to allow for changing the file on a
variable-length datatype on disk.

Platforms tested:
    FreeBSD 4.11 (sleipnir)
    Linux 2.4
    Can't h5committest right now, due to missing cache files.
2006-01-28 13:31:22 -05:00
Quincey Koziol
a1708eb023 [svn-r11712] Purpose:
New feature

Description:
    Check in baseline for compact group revisions, which radically revises the
source code for managing groups and object headers.

WARNING!!!!  WARNING!!!!  WARNING!!!!  WARNING!!!!  WARNING!!!!  WARNING!!!!
WARNING!!!!  WARNING!!!!  WARNING!!!!  WARNING!!!!  WARNING!!!!  WARNING!!!!

    This initiates the "unstable" phase of the 1.7.x branch, leading up
to the 1.8.0 release.  Please test this code, but do _NOT_ keep files created
with it - the format will change again before the release and you will not
be able to read your old files!!!

WARNING!!!!  WARNING!!!!  WARNING!!!!  WARNING!!!!  WARNING!!!!  WARNING!!!!
WARNING!!!!  WARNING!!!!  WARNING!!!!  WARNING!!!!  WARNING!!!!  WARNING!!!!


Solution:
    There's too many changes to really describe them all, but some of them
include:
    - Stop abusing the H5G_entry_t structure and split it into two separate
        structures for non-symbol table node use within the library: H5O_loc_t
        for object locations in a file and H5G_name_t to store the path to
        an opened object.  H5G_entry_t is now only used for storing symbol
        table entries on disk.

    - Retire H5G_namei() in favor of a more general mechanism for traversing
        group paths and issuing callbacks on objects located.  This gets us out
        of the business of hacking H5G_namei() for new features, generally.

    - Revised H5O* routines to take a H5O_loc_t instead of H5G_entry_t

    - Lots more...

Platforms tested:
    h5committested and maybe another dozen configurations.... :-)
2005-11-14 21:55:39 -05:00
Quincey Koziol
41c595e269 [svn-r11485] Purpose:
Code cleanup

Description:
    Clean up & optimize (a little) the recent "hyperslab rebuilding" code
w/Kent.

Platforms tested:
    FreeBSD 4.11 (sleipnir)
    Too minor to require h5committest
2005-09-30 16:46:56 -05:00
Quincey Koziol
6b45f5172c [svn-r11245] Purpose:
Code cleanup

Description:
    Trim trailing whitespace, which is making 'diff'ing the two branches
difficult.

Solution:
    Ran this script in each directory:

foreach f (*.[ch] *.cpp)
    sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f
end


Platforms tested:
    FreeBSD 4.11 (sleipnir)
    Too minor to require h5committest
2005-08-13 15:53:35 -05:00
Quincey Koziol
96a49c0d37 [svn-r11078] Purpose:
Bug fix

Description:
    Correct memory leak when a dataset is attempted to be opened, but turns
out to be a group or named datatype.

    Also, clean up code that was leading to the leak and zero out empty
group entries to help prevent similar errors in the future.

Platforms tested:
    FreebSD 4.11 (sleipnir)
    Too minor to require h5committest
2005-07-16 21:46:42 -05:00
Quincey Koziol
ddf9e4a4af [svn-r11014] Purpose:
Code cleanup

Description:
    Refactor metadata cache to merge "dirtied" flag in with other flags for
H5AC_unprotect and H5C_unprotect.

Platforms tested:
    FreeBSD 4.11 (sleipnir)
    h5committest
2005-07-02 11:36:15 -05:00
John Mainzer
7f8e346026 [svn-r10978] Purpose:
Interim checkin of code changes moving management of the is_dirty flag
into the cache code.


Description:

   Prior to this checkin, management of the is_dirty flag was handled
above the level of the metadata cache.  This can no longer be allowed,
as it introduces a race condition in the proposed fix for a cache
coherency bug in PHDF5.


Solution:

   Move management fo the is_dirty flag to the cache code proper.
Entries are now marked as dirty via a flag on the unprotect call.


Platforms tested:

h5committested


Misc. update:
2005-06-24 01:30:29 -05:00
Quincey Koziol
d641030436 [svn-r10951] Purpose:
Bug fix

Description:
    Hyperslab selections that had a selection offset and were applied to a
chunked dataset could get into an infinite loop or core dump if the same
selection was used multiple times, with different selection offsets.

Solution:
    "Normalize" the selection with the selection offset, generate the
selections for the chunks overlapped and then "denormalize" the selection.

Platforms tested:
    FreeBSD 4.11 (sleipnir)
    Too minor to require h5committest
2005-06-18 00:10:22 -05:00
Quincey Koziol
427ff7da28 [svn-r9727] Purpose:
Bug Fix/Code Cleanup/Doc Cleanup/Optimization/Branch Sync :-)

Description:
    Generally speaking, this is the "signed->unsigned" change to selections.
However, in the process of merging code back, things got stickier and stickier
until I ended up doing a big "sync the two branches up" operation.  So... I
brought back all the "infrastructure" fixes from the development branch to the
release branch (which I think were actually making some improvement in
performance) as well as fixed several bugs which had been fixed in one branch,
but not the other.

    I've also tagged the repository before making this checkin with the label
"before_signed_unsigned_changes".

Platforms tested:
    FreeBSD 4.10 (sleipnir) w/parallel & fphdf5
    FreeBSD 4.10 (sleipnir) w/threadsafe
    FreeBSD 4.10 (sleipnir) w/backward compatibility
    Solaris 2.7 (arabica) w/"purify options"
    Solaris 2.8 (sol) w/FORTRAN & C++
    AIX 5.x (copper) w/parallel & FORTRAN
    IRIX64 6.5 (modi4) w/FORTRAN
    Linux 2.4 (heping) w/FORTRAN & C++


Misc. update:
2004-12-29 09:26:20 -05:00
MuQun Yang
1702d75b3a [svn-r9519] Purpose:
Adding codes for the general MPI derived datatype in order to
better incorporate new fixes of HDF5 library.

Description:
Note: These codes have not been tested for general use.
Don't call these functions in your developments of the HDF5 library.
Also these codes are stand-alone codes, they should not affect
other library codes.

Solution:

Platforms tested:
Heping(C and Parallel linux 2.4, mpich 1.2.6)
Arabica(C,C++,Fortran, Solaris 2.7)
Copper(C,c++,Fortran, AIX 5.1, NOTE: c++ FAILED, seems not due to the recent check-in)

Misc. update:
2004-11-11 16:00:01 -05:00
Quincey Koziol
7af838b69c [svn-r9354] Purpose:
Bug fix & code cleanup

Description:
    More dataset cleanups to get to a point where we can fix the chunked I/O
bug.

    Also fix a couple of errors in the recent file object resurrection changes
which should hopefully address the recent daily test failres (H5T.c)

Platforms tested:
    FreeBSD 4.10 (sleipnir) w/parallel
    Solaris 2.7 (arabica)
    h5committest
2004-10-01 18:00:42 -05:00
Quincey Koziol
7d457ba693 [svn-r9342] Purpose:
Bug fix/code cleanup

Description:
    Clean up raw data I/O code to bundle the I/O parameters (dataset, DXPL ID,
etc) into a single struct to pass around through the dataset I/O routines,
since they are always passed together, until very near the bottom of the I/O
stack.

Platforms tested:
    FreeBSD 4.10 (sleipnir) w/parallel
    Solaris 2.7 (arabica)
    IRIX64 6.5 (modi4)
    h5committest
2004-09-29 22:46:58 -05:00
Quincey Koziol
daa96590d3 [svn-r8987] Purpose:
Code cleanup

Description:
    Fix another batch of minor differences between the development and release
branches.

Platforms tested:
    FreeBSD 4.10 (sleipnir) w/parallel
    Too minor to require h5committest
2004-08-02 12:51:50 -05:00
Quincey Koziol
3df2828991 [svn-r8981] Purpose:
Code cleanup

Description:
    Various minor tweaks to clean code up and bring it into closer
syncronization with the release branch.

Platforms tested:
    FreeBSD 4.10 (sleipnir) w/parallel
    h5committested
    IRIX64 6.5 (modi4)
2004-08-02 09:03:40 -05:00
James Laird
5a19f181b3 [svn-r8953]
Purpose:
Bug fix

Description:
When a simple dataspace is created, its extent should be set before using it,
or it will silently function as a NULL dataspace.

Solution:
Added checks on user-supplied dataspaces.  Now dataspaces without extents set
will throw errors; users must explicitly set a dataspace to be NULL.

Platforms tested:
sleipnir, windows
2004-07-27 11:55:19 -05:00
Quincey Koziol
ecd9f0a10e [svn-r8932] Purpose:
Code cleanup

Description:
    Clean up collective chunking code a bit.

    Also, add '--enable-instrument' configure flag to have a mechanism for
determining that optimized operations happened correctly in the library (instead
of just the "normal" way) by allowing 'flag' properties to be set outside the
library and set when the "right" thing happens.  This is mainly for debugging
and regression checks, so we make certain we don't break optimized I/O by
accident.  It's enabled by default when --enable-debug is on (which is on by
default in the development branch and off by default in the release branch),
but can also be independently controlled with its own configure flag.

Platforms tested:
    FreeBSD 4.10 (sleipnir) w/parallel
    IBM p690 (copper) w/parallel
2004-07-22 15:46:27 -05:00
Raymond Lu
7fe5ff1fed [svn-r8921] Purpose: new feature
Description:  This is the second step of checkin for encoding and decoding objects.
H5Tencode and H5Tdecode have been committed in the previous step.  H5Sencode
and H5Sdecode are checked in this time.

Solution: Given object ID, these functions encode and decode object information
into and from binary buffer and return new object ID.  They take advantage of the
existing codes of object header message and encode in the same format.

Platforms tested:  fuss and h5committest.

Misc. update:  RELEASE.txt
2004-07-21 16:30:26 -05:00