Bring r17943 from trunk to 1.8 branch:
Finish refactoring v2 B-trees so that they can have client callback
context provided to the encode/decode callbacks.
Tested on:
FreeBSD/64 6.3 (liberty)
(h5committested on trunk)
Bring revisions 17649, 17657 and 17658 from trunk to 1.8 branch:
17649: Refactor v2 B-trees to pin the B-tree header in the cache instead
of using separate reference counted data structure.
17657: Refactor the v2 B-tree code to use an open & close call
internally, in preparation for making those part of the library
private APIs for dealing with v2 B-trees.
17658: Rename 'H5B2_t' -> 'H5B2_hdr_t' and 'bt2' -> 'hdr' in preparation
for make v2 B-tree open/close routines library private (instead
of static).
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
Mac OS X/32 10.6.1 (amazon) in debug mode
Mac OS X/32 10.6.1 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
Description:
Fixed CommonFG::getComment and CommonFG::getLinkval to provide
default values for buffer size to improve usability.
Added test file tlinks.cpp, which only contains test for getLinkval
and will expand when C++ wrappers for H5L functions are implemented.
Platforms tested:
Linux/32 2.6 (jam)
FreeBSD/64 6.3 (liberty)
Merge from Trunk
Description:
Merging all of my CFLAGS-related changes from trunk to 1.8
This includes revision #s: 17616, 17625, 17627, 17639, and 17643.
Tested:
h5committest and some additional checks on our FreeBSD as well
as NCSA's machines.
Bring r17624 from trunk to 1.8 branch:
Don't allow reads to change or add to the metadata accumulator, since
they might be speculative and could bring raw data into the metadata
accumulator.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
Mac OS X/32 10.6.1 (amazon) in debug mode
Mac OS X/32 10.6.1 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
Correct compile warnings and rename fiels to match the rest of the
test files in this directory.
Note: this is currently failing for srcdir builds!
Tested on:
FreeBSD/32 6.3 (duty)
r17543 | acheng | 2009-09-28 23:43:22 -0500 (Mon, 28 Sep 2009) | 8 lines
New test: (Bug ID 1656):
Add new tests (tcheck_version, testcheck_version.sh) to verify H5check_version()
does issue warnings and abort accordingly.
Changed H5check_version() to suppress the warning message totally if
$HDF5_DISABLE_VERSION_CHECK is 2 or higher. (Old behavior treated 3 or higher
the same as 1, that is to print a warning and allows the program to continue.
Tests:
H5committed tested plus jam serial tested.
Add backward compatibility test to make certain that the 1.8 library
handles encountering a file with a fixed array chunk index gracefully.
Tested on:
FreeBSD/32 6.3 (duty) w/production
(too minor to require h5committest)
Stage 2 implementation of embedded library information feature.
H5.c: added code to print the embedded library information when there is
a library versions mis-match occurs. This ensures the library information
string is included in the executable.
Also modifies the code so that the Library mismatch warning string is
included only once in the executable.
H5private.h:
Added a global reference to the libinfo string variable to prepare
for possible stage 3 implementation of a public API.
test/testlibinfo.sh.in:
A new test added to verify the library information is indeed included
in the executables.
configure.in:
configure:
Added entry to auto-generate test/testlibinfo.sh.
H5detect.c:
Modified the libhdf5settings generating code to allow it to insert the
strings to a file other than stdout. This maybe needed in stage 3
implementation.
MANIFEST:
updated with the newly added file of testlibinfo.sh.in.
Tested:
h5committest passed. Also passed jam in serial mode.
Bring r17365 from trunk to 1.8 branch:
Final merge of changes from sblock_mdc branch back to trunk. The
superblock is now managed by the metadata cache.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
(h5committest performed on trunk)
Bring r17243 from trunk to 1.8 branch:
Refactor how the layout message is created/written/read in the
dataset's object header.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
(change h5committested on trunk)
Merge these trunk revisions which occurred during the 1.8.3 release code
freeze back to the 1.8 branch:
From Quincey: 16845 16847 16849 16851 16858 16869 16897
From Ray: 16859 16880
From Allen: 16863
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
Mac OS X/32 10.5.6 (amazon) in debug mode
Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
Description:
h5repack previously would not take named datatypes into consideration when copying
datasets and attributes. This would cause extra anonymous datatypes in the target file
at best, and cause errors halfway through the repacking at worst. h5repack should now
always handle named datatypes correctly. Named datatypes are also now converted to the
native type when -n is given.
Tested: jam, linew, smirom (h5committest)
Description:
Versions of the library between 1.3.0 and 1.6.3 have a bug which prevents them
from opening any file that does not have the root group's symbol table
information cached in the root group's entry in the superblock. Prior to 1.8
this was not an issue as this information was always cached. However, 1.8.0
stopped writing this information (which is not required by the file format
specification), and these older versions can therefore not read files created or
last written by versions 1.8.0 to 1.8.2. This fix modifies the library to once
again add this information to the superblock (when using the old file format).
Tested: jam, linew, smirom (h5committest)
Description:
Some files apparently exist in the wild which have corrupt symbol table messages
on the root group. These files can be opened by 1.6 (which uses the cached
information in the superblock) but not by 1.8. This patch fixes 1.8 and 1.9 so
they can now open these files, and will correct them if necessary. Also fix
some potential (rare) problems with array datatype versions.
Tested: jam (parallel; h5committest not working on linew or smirom)
have 2 expected outputs for 2 h5ls runs depending if run on a big or little endian machine. Configure.in was modified to export a variable carrying endianess information to testh5ls.sh. This script then compares the current run with 2 expected outputs, one for a big-endian machine (linew was used to generate the output), other for little endian (jam was used to generate the output)
the way h5ls prints types, it starts searching for NATIVE types first. One solution would be h5ls not to detect these native types, using for example the same print datatype function that h5dump does, that would make the output look the same on all platforms ("32-bit little-endian integer" would be printed instead). Drawback, this "native" information would not be available. Other solution is to have not one but 2 expected outputs and make the shell script detect the endianess and compare with one output or other
tested: jam, linew
Bug fix: for compound types, the not comparable test for members was not done
Solution: for compound types, recursively apply that check
Two new cases are added
1) the compound type has a different number of members. Message printed is
<obj1> has X members <obj2> has Y members
Where X and Y are the number of members of each compound type being compared
2) the compound type has not comparable types (for example a double and an int at the same index)
In this case the message
Comparison not possible: object1 is of class1 and object2 is of class2
Is replaced with
Comparison not possible: object1 has a class1 and object2 has a class2
Modified the test generator program to have these 2 cases
Added a shell run for these 2 cases
Tested: h5committest
Bring r16401 back from trunk:
Correct error introduced in r16353 with layout version, and add test
so it gets caught earlier.
Tested on:
FreeBSD/32 6.3 (duty)
Too minor to require h5committest
#1368 (E1) h5diff: implement "not comparable" messages. Implemented RFC. The new option is <-c, --compare List objects that are not comparable>
added some test cases
tested: windows, linux
Print a message of
Storage: information not available
When displaying storage information for VL and dataset region types
Added 2 shell runs that display this information
#818
Tested: windows, linux
Bring r16204 back from trunk:
Moved v1 B-tree debugging routines into separate module and thinned
out header files a bit.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
Too minor to require h5committest
Bring r16180 back from trunk:
Rename the current chunk indexing routines module for B-tree indices
to better reflect their purpose, and to make the upcoming extensible array
index module fit in better.
Tested:
FreeBSD/32 6.3
Too minor to require h5committest
Description: Improved external link traversal of h5dump. h5dump will now
properly avoid all cycles, even those spanning multiple files. Improvement
to the output of committed datatypes. Committed datatypes are now checked
for uniqueness (like other objects). Tests added for these cases.
Tested: kagiso, linew, smirom (h5committest)
Description:
Many new source files were added from the freespace branch. This checkin adds the code to Windows as well.
Note: Some tests are still failing on Windows, but this checkin brings us closer to fixing them. In particular, freespace test fails on compile (Quincey is working on it), and the DLL links test fails at runtime (I'll look into it)
Tested:
VS2005 on WinXP
Description: Added -E option to h5ls. When set, this alows h5ls to enter
external files (currently only through an external link). The -r option by
itself will no longer allow h5ls to traverse external links.
Tested: kagiso, linew, smirom (h5committest)
Bring r15800 back from trunk:
- File free space branch changes through r15794
Tested on:
Mac OS X/32 10.5.5 (amazon) in debug mode
Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
