Commit Graph

203 Commits

Author SHA1 Message Date
Quincey Koziol
a608820193 [svn-r18422] Description:
Bring r18413:18420 from trunk to 1.8 branch:
	- unify srcdir query, etc.
	- Move libhdf5.settings string out of H5Tinit.c

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.6.2 (amazon) in debug mode
        Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe,
                in production mode
2010-03-18 13:05:13 -05:00
Quincey Koziol
9211b9e5b6 [svn-r18389] Description:
Bring r18388 from trunk back to 1.8 branch:

    Bring changes from Coverity session from branch into trunk:

r18378:
Fixed coverity issues 207 and 322.  Pointer hdr was checked for NULL after being
asserted and dereferenced.  Check was removed.

r18379:
Fix coverity issues # 88 and # 435.

r18380:
Fixed Coverity issue # 85.  Added check of returned pointer for NULL before use.

r18381:
Resolve coverity issues # 214 and # 215

r18382:
Issue 131: Add null checks to allocations and check for free in error handling

r18383:
Issue 421:
Reorganized code to make intention clearer. Also, set local variable fl to NULL
after transfer to tail. Heap->freelist will take care of all allocations

r18384:
Coverity #249 and #250 - STRING_ATT_CHECK wasn't allocated before being used
and freed in function test_write_vl_string_attribute and
test_read_vl_string_attribute.

Tested on:
    Mac OS X/32 10.6.2 (amazon) w/debug & prod
    (h5committested in daily tests)
2010-03-06 16:24:31 -05:00
Quincey Koziol
c3e5a19194 [svn-r18348] Description:
Bring r18346 from trunk to 1.8 branch:

   Bring Coverity fixes back from branch to trunk:

r18336:
Fix coverity issues 275, 276, 277, 323, 432, 433, and 434

r18337:
Fix Coverity issue #106: release free space section node on error

r18338:
Fixed Coverity #94 - In H5P_register, new_class wasn't closed when there's an
error after it's created.

r18339:
Fix Coverity #185 - In test_conv_str_1, BUF wasn't freed when there's an error
in this function.

r18340:
Correct error in r18337 that wasn't releasing indirect fractal heap block
early enough.

r18341:
Close nodes if any failed in the middle of allocating new nodes. Coverity 140
and 141

r18342:
Correct [another] problem w/r18337.

r18343:
Fix coverity items 185, 20, and 21.

r18344:
Fix Coverity 213 - In H5FD_family_close, the double pointer file->memb was
dereferenced without NULL checking 
(We believe).

r18345:
Fix Coverity issue # 210;  removed NULL check after pointer dereferenced in
H5HFdblock.c.   Also assigned NULL to pointer in H5Pint.c to fix segmentation
fault.

Tested on:
	FreeBSD/32 6.3 (duty) w/debug)
	(h5committested on trunk)
2010-02-27 15:51:49 -05:00
Quincey Koziol
fa1f33701d [svn-r18198] Description:
Trim trailing whitespace from source code files, with following command:

find . \( -name "*.[ch]" -or -name "*.cpp" -or -name "*.f90" \) -print |xargs -n 1 sed -i "" 's/[[:blank:]]*$//'

Tested on:
    None - eyeballed only
2010-01-29 23:33:04 -05:00
Raymond Lu
e3c8027744 [svn-r18189] I added a test for copying an existing DCPL and using the copy to create a new dataset. There's
a bug report (#1608) saying h5repack failed to do that sometimes.  But I couldn't reproduce it.
So I added this test and closed the report.  The test is in the function test_copy_dcpl in dsets.c.

Tested on jam, amani, and linew.
2010-01-29 15:03:53 -05:00
Quincey Koziol
57ac6e6745 [svn-r17982] Description:
Bring r17980 from trunk to 1.8 branch:

   Bring Coverity changes into the trunk: (also other minor cleanups)

r17955:
Fix Coverity item 24.  Add missing error condition to
H5AC_ext_config_2_int_config.

r17956:
Fix Coverity item 24.  Improve error checking in H5A_compact_build_table_cb.

r17957:
Fix Coverity item 150.  Fix warning in H5A_compact_build_table_cb.

r17958:
Fix Coverity item 117.  Fix error handling in H5B_shared_new.

r17959:
Fix Coverity item 209.  Added an assertion for leaf->shared in
H5B2_cache_leaf_dest.

r17960:
Fix Coverity item 208.  Added an assertion for internal->shared in
H5B2_cache_internal_dest.

r17961:
Fix Coverity item 89.  Reworked the code to avoid array overrun in
H5C__autoadjust__ageout__insert_new_marker.

r17962:
Fix for coverity Resource_leak 195,203,204,205.

r17963:
Fix Coverity item 44.  Prevented potential NULL dereference in H5D_btree_debug.

r17964:
Fix Coverity issues #197, 198 & 199: memory not being released.  (Also
clean up other resource leaks in nearby and/or similar code).

r17965:
Fix Coverity issue #151: release resources on error

r17966:
Fix Coverity issue #187: Remove leftover code remnant from prior bugfix
which was causing resource leak of open files.

r17967:
Fixed Coverity issues # 193 & 194.  Removed unnecessary memory allocation and
added comparison of length of path parameter to the size of the destination
buffer in h5import.h/h5import.c.

r17968:
Fix Coverity item 144.  Fixed memory leak on error in H5D_chunk_copy.

r17969:
Fix for coverity Resource_leak #196.

r17970:
Coverity 167-173:
Initialized pointer of buffers.
In error handling, closed types and free memory.

Tested on:
   FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
   (h5committested on trunk)
2009-12-10 08:58:14 -05:00
Quincey Koziol
892050a830 [svn-r17979] Description:
Bring r17978 from trunk to 1.8 branch:

    Simplify checking for detecting variable-length strings.

Tested on:
    Mac OS X/32 10.6.2 (amazon) debug & production
    Too minor to require h5committest
2009-12-09 13:20:37 -05:00
Quincey Koziol
77a3cc2292 [svn-r17954] Description:
Bring r17953 from trunk to 1.8 branch:

   Bring Coverity changes into the trunk:

r17877:
Error 266: Uninitialized memspace set to -1. Changed malloc and free to HDmalloc and HDfree. Removed unused dtype var.

r17878:
Error 265: Uninitialized mem_space set to -1. Changed malloc and free to HDmalloc and HDfree. 
Error 267: Uninitialized smspace set to -1. Changed malloc and free to HDmalloc and HDfree.

r17879:
Error 242: Uninitialized aid set to -1. 
Error 243: Uninitialized sid set to -1. 
Uninitialized tid set to -1 for consistency

r17880:
Error 242: reinitialized aid to -1 after close to be ready for reuse. 
Error 243: reinitialized sid to -1 after close to be ready for reuse. 
reinitialized tid to -1 for consistency after close to be ready for reuse.

r17881:
use valgrind to check there is a memory leak. The fix is to free ptrstr in line 5838 at xml_dump_group() of h5dump.c after it is used. run the valgrind after the fix, no memory leak for that part of the code.

r17882:
Fix Coverity items 256 and 269.

r17883:
Error 222-230: initialized hid_t vars to -1 after close to be ready for reuse. 
Also added H5Tclose for tid in gent_bigdims

r17884:
Bug fix (Coverity run2, view 23, dead code)
(this is pair-program done by Albert, Elena and Larry).

Confirmed and fixed the deadcode in hyperslab read branch of function
diff_datasetid.
(Discovered other bad code that diff_datasetid() should be recoded.  
Bug 1693 is entered for this.)

r17906:
Fix Coverity item 260.

r17907:
262: Initialized hid_t's dtype, dtype_tmp and file to -1. Initialized H5T_t * dt to NULL.

r17908:
Fix Coverity item 261.

r17909:
Fix Coverity item 248.

r17910:
Revise fix for Coverity item 248.

r17911:
Resolved coverity issues #s 263, 162, 163, 164. All issues in dsets.c. Initialized fid and did hid_t's. filter_corrupt function was returning in the middle of an if statement, bypassing free calls. Updated error handling to free buffers and hid_t's appropriately.

r17912:
(done by Larry and Albert)
Cleanup Coverity view warnings (#231-241) about
using uninitialized variables.  Initialized all
of them.

r17913:
Resolved issue 251 and 264. Initialized tid2 to -1 and initialized buffers that were freed in case of an error.

r17914:
Resolved coverity issues 66, 220, and 221: 

66: Negative Return assignment ignored

220,221: Initialized hid_t's.

r17915:
Fix Coverity item 247.

r17916:
Fix Coverity item 246.

r17917:
Fix Coverity item 245.

r17918:
Fix Coverity item 244.

r17919:
Coverity Issue #84: Moved asserts in H5T_cmp to the top of the function, and converted them to HDassert. Coverity complaining about using potentially NULL pointer without checking it. Want to see if Coverity will accept Assertions as acceptable checking before using the value. 

Tested on:
	FreeBSD/32 6.3 (duty) w/debug
	(h5committested on trunk)
2009-12-03 14:41:48 -05:00
Larry Knox
62521fcb96 [svn-r17656] Added h5_make_local_copy function to address bug 1630, and refactored tests that were discovered to copy data files to avoid writing to data files checked into svn to use the new function.
Tested on amani, jam, and linew with h5committest and on jam with a read only mount of source files on pegdub.
2009-10-15 17:14:10 -05:00
Quincey Koziol
9726d77e95 [svn-r17526] Description:
Add backward compatibility test to make certain that the 1.8 library
handles encountering a file with a fixed array chunk index gracefully.

Tested on:
        FreeBSD/32 6.3 (duty) w/production
        (too minor to require h5committest)
2009-09-24 18:26:23 -05:00
Quincey Koziol
856a80b949 [svn-r17150] Description:
Bring r17148:17149 from trunk into 1.8 branch:

   Refactor how chunked dataset information is computed, moving it earlier and
avoiding more recomputation.

Tested on:
   FreeBSD/32 6.3 (duty) in debug mode
   FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
   Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
       in debug mode
   Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
       w/C++ & FORTRAN, in production mode
   Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
       w/szip filter, in production mode
   Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
       in production mode
   Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
   Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
   Mac OS X/32 10.5.7 (amazon) in debug mode
   Mac OS X/32 10.5.7 (amazon) w/C++ & FORTRAN, w/threadsafe,
       in production mode
2009-07-02 18:38:38 -05:00
Quincey Koziol
b0df711c3c [svn-r17147] Description:
Bring r17146 from trunk to 1.8 branch:

        Bring a bunch of misc. improvements & tweaks from the revise_chunks
branch back to the trunk, so that future merges won't be so painful.

Tested on:
	FreeBSd/32 6.3 (duty)
	(h5committested on trunk)
2009-07-02 16:17:02 -05:00
Neil Fortner
f5fddfb7c1 [svn-r17109] Purpose: Fix bug in H5Z_filter_info
Description:
Previously, when H5Z_filter_info was called for a filter that was not present,
it would succeed and return the information from one position past the end of
the pipeline, possibly causing a segfault.  This affected at least
H5Pget_fitler_by_id1/2, and possibly other API functions.  Fixed to properly
return failure.

Tested: jam, linew, smirom (h5committest)
2009-06-25 13:58:51 -05:00
Quincey Koziol
548eec3070 [svn-r16920] Description:
Merge these trunk revisions which occurred during the 1.8.3 release code
freeze back to the 1.8 branch:

    From Quincey: 16845 16847 16849 16851 16858 16869 16897

    From Ray: 16859 16880

    From Allen: 16863

Tested on:
    FreeBSD/32 6.3 (duty) in debug mode
    FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
    Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
        in debug mode
    Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
        w/C++ & FORTRAN, in production mode
    Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
        w/szip filter, in production mode
    Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
        in production mode
    Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
    Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
    Mac OS X/32 10.5.6 (amazon) in debug mode
    Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe,
        in production mode
2009-05-05 10:05:17 -05:00
Neil Fortner
233fa9bee7 [svn-r16808] Purpose: Fix bug 1533
Description:
Previously, there was no versioning for H5Z_class_t.  This prevented applications
written for 1.6 using custom filters from being able to use the 1.8 library.
There is now an H5Z_class1_t and H5Z_class2_t to enable compatibility.  H5Zregister is
*not* versioned, it determines which version of the struct has been passed in by the
value of the first field (id or version, both are ints).

Tested: jam, linew, smirom (h5committest), jam (--with-default-api-version=v16)
2009-04-20 14:17:59 -05:00
Quincey Koziol
828e7e2416 [svn-r16566] Description:
Bring r16560 back from trunk.

Tested on:
    Mac OS X/32 10.5.6 (amazon) debug & production
    (Following up with tests on more platforms)
2009-03-10 20:44:36 -05:00
Raymond Lu
db81699a13 [svn-r16538] Added more test case for bypassing the cache. In test_big_chunks_bypass_cache,
test the correctness of the data when the fill value is defined or not.  The 
library should let the chunks bypass the cache depending on the size of the 
chunks and whether to write fill value to the chunks.

Tested on jam - simple change.
2009-03-03 14:35:34 -05:00
Quincey Koziol
494226aaf6 [svn-r16495] Description:
Bring r16488 back from trunk:

    Clean up code and eliminate resource leaks.  Also avoid "null" I/O when
chunk doesn't exist and we can skip it.

Tested on:
    Mac OS X/32 10.5.6 (amazon)
    (too minor to require h5committest)
2009-02-19 14:38:20 -05:00
Allen Byrne
c880943ce9 [svn-r16490] Fixed bug #1459 by eliminating the macro long_long and replacing all instances with long long.
Tested:
   h5comittest
   fedora 10 x64
   XP32, VNET
2009-02-18 15:05:49 -05:00
Larry Knox
b566fea225 [svn-r16471] Change H5Dopen to H5Dopen2 - fixes compile error - too many arguments for H5Dopen1 when using v1.6 compatible flag. Trivial change, tested on smirom and jam. 2009-02-12 11:10:35 -05:00
Raymond Lu
87cdac5fe9 [svn-r16467] Performance Improvement(bug #1450). When a chunk is bigger than the cache size and isn't allocated
on disk, the library still loaded it in the cache, which is redundant.  I changed it to bypass the
cache and added a test in dsets.c.


Tested on jam and smirom.
2009-02-11 14:22:59 -05:00
Neil Fortner
ca1fa22021 [svn-r16087] Purpose: Port H5Pset_chunk_cache, H5Pget_chunk_cache, and H5Dget_access_plist
functions to 1.8 branch

Tested: kagiso, jam (trunk version tested with h5committest)
2008-11-17 14:36:40 -05:00
Quincey Koziol
8f3811e1b1 [svn-r15869] Description:
Bring r15868 from trunk to 1.8 release branch:

	Correct a minor error in file free space allocation which was affecting
the 'multi' VFD and preventing some tests from fully working with it.

	Wholesale revisitation of all the places where tests were disabled
with various VFDs and remove or correct all these so that _only_ the tests
which _really_ can't work with particular VFDs are skipped during a
'make check-vfd' test.


Tested on:
        Mac OS X/32 10.5.5 (amazon) in debug mode
        Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe,
                                in production mode
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
2008-10-14 22:53:09 -05:00
Quincey Koziol
bdbdbb9f89 [svn-r15801] Description:
Bring r15800 back from trunk:

		- File free space branch changes through r15794

Tested on:
        Mac OS X/32 10.5.5 (amazon) in debug mode
        Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe,
                                in production mode
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
2008-10-07 08:32:32 -05:00
Quincey Koziol
b9be045596 [svn-r15629] Description:
Remove trailing whitespace from C/C++ source files, with the following
script:

   foreach f (*.[ch] *.cpp)
       sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f
   end

Tested on:
   Mac OS X/32 10.5.5 (amazon)
   No need for h5committest, just whitespace changes...
2008-09-16 11:22:16 -05:00
Quincey Koziol
90b94c00fe [svn-r15035] Description:
Backport revision 15034 from trunk: 

	Correct another case of using 'size_t' for chunk sizes where 'uint32_t'
was necessary.

Tested on:
	FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN
2008-05-18 23:47:38 -05:00
Quincey Koziol
c23c6b9392 [svn-r15016] Description:
Port revision 15015 back to 1.8 branch:

>     Detect chunks that are >4GB before dataset gets created and return error
> to application.
> 
>     Tweak lots of internal variables that hold the chunk size/dimensions to
> use an 'uint32_t', instead of a 'size_t', so that the integer size is constant.
> 
>     Correct a number of our tests which were creating datasets with chunks
> that were >4GB and add some specific tests for >4GB chunk size detection.
> 
>     Minor whitespace & other code cleanups.

Tested on:
    Mac OS X/32 10.5.2 (amazon)
    Forthcoming testing on other platforms...
2008-05-15 22:27:13 -05:00
Quincey Koziol
06dc01d40e [svn-r14917] Description:
Clean up files created & cleaned up for dataset tests.

Tested on:
    Mac OS X/32 10.5.2 (amazon)
    Too minor to require h5committest
2008-05-01 17:19:40 -05:00
Quincey Koziol
e622f33515 [svn-r14420] Description:
Correct the prototype for H5Sselect_elements() to take an 'hsize_t *' for
the coordinates, instead of 'hsize_t **'.

Tested on:
    Mac OS X/32 10.5.1 (amazon)
2008-01-15 16:10:42 -05:00
Quincey Koziol
7fc10c0ea7 [svn-r14413] Description:
Change H5P[gs]et_format_bounds() => H5P[gs]et_libver_bounds() and also
enumerated values H5F_FORMAT_{EARLIEST, LATEST} => H5F_LIBVER_{EARLIEST, LATEST}

Tested on:
        FreeBSD/32 6.2 (duty) in debug mode
        FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Mac OS X/32 10.4.10 (amazon) in debug mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
2008-01-14 18:49:12 -05:00
Quincey Koziol
35694d44ae [svn-r14362] Description:
Switched from "H5P[gs]et_latest_format" to "H5P[gs]et_format_bounds".

Tested on:
        FreeBSD/32 6.2 (duty) in debug mode
        FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Mac OS X/32 10.4.10 (amazon) in debug mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
2008-01-03 08:55:39 -05:00
Quincey Koziol
765f0159ff [svn-r14307] Description:
- Extracted common code from H5D_select_read/H5D_select_write into single
        routine (H5D_select_io) and made H5D_select_read/H5D_select_write
        "gateway" routines, passing I/O buffer to operate on in "op" struct.
    - Create optimized pathway in H5D_select_io for I/O operations on single
        elements.
    - Make "get linear offset of first element" callback for each type of
        selection (used in "optimized pathway", above)

Tested on:
        FreeBSD/32 6.2 (duty) in debug mode
        FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Mac OS X/32 10.4.10 (amazon) in debug mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
2007-11-29 13:44:07 -05:00
Quincey Koziol
24f2310b12 [svn-r14229] Description:
Change H5O[gs]et_comment to H5O[gs]et_comment_by_name and re-add simpler
forms of H5O[gs]et_comment.

Tested on:
        FreeBSD/32 6.2 (duty) in debug mode
        FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Mac OS X/32 10.4.10 (amazon) in debug mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
2007-11-01 13:24:08 -05:00
Quincey Koziol
a5984f59f7 [svn-r14212] Description:
Make H5Tarray_create() and H5Tget_array_dims() versioned, and drop the
"perm" parameter from the '2' versions.

	Shift internal library usage to '2' versions.

	Add simple regression tests for '1' versions.

Tested on:
        FreeBSD/32 6.2 (duty) in debug mode
        FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Mac OS X/32 10.4.10 (amazon) in debug mode
2007-10-18 17:02:19 -05:00
Quincey Koziol
873c1d3181 [svn-r14209] Description:
Remove 1.6 compatibility ifdef's which were masking error from querying
for info on invalid filter.

Tested on:
        FreeBSD/32 6.2 (duty) in debug mode
        FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Mac OS X/32 10.4.10 (amazon) in debug mode
2007-10-18 12:33:18 -05:00
Quincey Koziol
b0eb42058c [svn-r14208] Description:
Make H5Pget_filter_by_id() API versioned and switch internal usage
to H5Pget_filter_by_id2().

	Add simple regression test for H5Pget_filter_by_id1().

Tested on:
        FreeBSD/32 6.2 (duty) in debug mode
        FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Mac OS X/32 10.4.10 (amazon) in debug mode
2007-10-18 11:10:46 -05:00
Quincey Koziol
13c484162c [svn-r14206] Description:
Make H5Pget_filter API versioned and switch internal usage to
H5Pget_filter2.

	Add regression test for H5Pget_filter1.

Tested on:
        FreeBSD/32 6.2 (duty) in debug mode
        FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Mac OS X/32 10.4.10 (amazon) in debug mode
2007-10-17 07:48:04 -05:00
Quincey Koziol
d9e5ca72f3 [svn-r14199] Description:
Add H5Dcreate to API versioned routines, replacing internal usage with
H5Dcreate2

	Fix thread-safe error stack initialization for API versioned error
stack printing routines.

Tested on:
        FreeBSD/32 6.2 (duty) in debug mode
        FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Mac OS X/32 10.4.10 (amazon) in debug mode
2007-10-11 11:24:11 -05:00
Quincey Koziol
16683943c6 [svn-r14193] Description:
Make H5Dopen versioned and change all internal usage to use H5Dopen2

	Add simple regression test for H5Dopen1

Tested on:
        FreeBSD/32 6.2 (duty) in debug mode
        FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Mac OS X/32 10.4.10 (amazon) in debug mode
2007-10-08 14:59:36 -05:00
Quincey Koziol
d3ee3988b6 [svn-r14192] Description:
Deprecate H5Dextend in favor of H5Dset_extent (without using API
versioning, due to changed behavior) and switch internal usage to H5Dset_extent

Tested on:
        FreeBSD/32 6.2 (duty) in debug mode
        FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Mac OS X/32 10.4.10 (amazon) in debug mode
2007-10-08 10:26:02 -05:00
Quincey Koziol
c50c23d387 [svn-r14129] Description:
Add H5O{set|get}_comment routines, which were overlooked before.

	Move H5G{set|get}_comment routines to deprecated code section,
replacing internal calls with H5O{set|get}_comment.

Tested on:
	FreeBSD/32 6.2 (duty)
	FreeBSD/64 6.2 (liberty)
	Linux/32 2.6 (kagiso)
	Linux/64 2.6 (smirom)
	Solaris/32 5.10 (linew)
	AIX/32 5.3 (copper)
	Mac OS X/32 10.4.10 (amazon)
2007-08-30 08:55:10 -05:00
Quincey Koziol
63eb5b9ebb [svn-r14104] Description:
Pursue calls to H5Gcreate() relentlessly and ruthlessly exterminate
them, leaving only a few tame specimens in text files and comments.  ;-)

Tested on:
	Mac OS X/32 10.4.10 (amazon)
	FreeBSD/32 6.2 (duty)
	FreeBSD/64 6.2 (liberty)
	Linux/32 2.6 (kagiso)
	Linux/64 2.6 (smirom)
	Solaris/32 5.10 (linew)
2007-08-23 15:25:25 -05:00
Raymond Lu
7f2a3a97c3 [svn-r13997] Moved H5D_istore_lock and H5D_istore_unlock from H5D_istore_writevv and H5D_istore_readvv to
H5D_chunk_write and H5D_chunk_read to avoid frequent lock and unlock and to improve some
performance.

Tested with h5committest on THG machines.
2007-07-21 14:50:43 -05:00
Quincey Koziol
d0a9cf9ffa [svn-r13871] Description:
Fix problems with 'check-vfd' target, that were [mostly] introduced with
the recent "unique, but sharable" ISOHM optimization.

    The problems were mostly with using the 'core' VFD, so the
H5Pset_fapl_core() API call was changed to re-open existing files (therefore
operating more list the sec2, stdio, etc. VFDs).  This allows many more of
the tests to run using the 'core' VFD, so those were enabled also.

Tested on:
    Linux/64 2.6 (chicago2) w/check-vfd
2007-06-15 14:11:59 -05:00
Quincey Koziol
c64ac252cd [svn-r13549] Description:
Check in changes from Elena and I to get pgcc compiler working again.
Primarily (all?) changes to move from using 'hsize_t' as array index to using
something else ('size_t') mostly.

Tested on:
    Linux/32 2.4 kagiso w/pgcc
2007-03-26 22:06:48 -05:00
Christian Chilan
ddf4364691 [svn-r13548] Tests that write/read on randomly selected chunks to check for potential problem in b-tree code. Tests passed on smirom, cobalt, and copper. 2007-03-26 20:01:23 -05:00
Raymond Lu
3ea2c632d5 [svn-r13388] Added a relative comparison between floating-point values to avoid compiler's
warning of comparing values with "==" or "!=".
2007-02-26 11:55:45 -05:00
Albert Cheng
ed7d456e51 [svn-r13253] Updated all C and C++ style source code files with the THG copyright notice.
Tested platform:
Kagiso only since it is only a comment block change.  If it works in one
machine, it should work in all, I hope.  Still need to check the parallel
build on copper.
2007-02-07 09:56:24 -05:00
Quincey Koziol
fa11904aab [svn-r13151] Description:
Clean up compiler warnings, esp. on Windows

Tested on:
	FreeBSD/32 6.2 (duty)
	Mac OS X/32 10.4.8 (amazon)
2007-01-17 18:37:24 -05:00
Quincey Koziol
9f39e59d91 [svn-r13012] Description:
Refactor object header code to separate process of creating an object
header message from the process of writing to an existing one.

    Start renaming operations that deal with object header messages to have
"H5O_msg_" prefix...

Tested on:
    Mac OS X/32 10.4.8 (amazon)
    FreeBSD/32 4.11 (sleipnir)
    Linux/32 2.4 (heping)
    AIX/32 5.? (copper)
2006-12-03 10:29:41 -05:00