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Author SHA1 Message Date
Neil Fortner
097df879db [svn-r19240] Merge revision 19077 to 1.8.5 branch: bug with local heaps and H5Pset_sizes. 
Tested: fedora
 2010-08-16 13:59:55 -05:00
Mike McGreevy
15ddff7e81 [svn-r19239] Purpose: 
- Bring revision 19078 from coverity branch to 1.8.5 branch
      to be included in patch release.

Description:

    This fix frees saved ID structures in the H5I interface
    when the library shuts down.

Tested:

    h5committest
 2010-08-16 12:38:59 -05:00
Raymond Lu
3e63ca78b1 [svn-r19151] Correction from the previous checkin for H5Oattribute.c. Because the attribute structure it 
is shared now. The only situation that requires copying the data is when the metadata cache 
evicts and reloads this attribute. The attribute structure will be different in that 
situation. 

Tested on jam.
 2010-07-29 13:40:09 -05:00
Raymond Lu
7370e4af46 [svn-r19145] Update for bug fix #1956. 2010-07-28 14:47:53 -05:00
Raymond Lu
a1ba49d7b7 [svn-r19138] In line 861, there's no need to allocate data buffer or copy the data because the attribute 
structure is shared now.  Only do an assertion check, instead.

Tested on jam - simple change.
 2010-07-28 12:29:47 -05:00
Mike McGreevy
6b18ac11ed [svn-r18978] Update version to 1.8.5 and change status from 
in development to released.
hdf5-1_8_5 		2010-06-04 13:30:01 -05:00
Frank Baker
b7f59c248f [svn-r18977] Description: 
Add acknowledgment of LBNL contractual support.
 2010-06-04 13:14:12 -05:00
Frank Baker
111726cc91 [svn-r18975] Description: 
Copy edit.
 2010-06-04 10:53:45 -05:00
Frank Baker
a53b85188c [svn-r18974] Description: 
Editorial pass on all sections except "Known Problems."
    Editorial pass on "Known Problems" since the last release.
 2010-06-04 10:16:24 -05:00
Albert Cheng
3f1abae1cd [svn-r18972] Updated with the new packed bits feature of h5dump. 2010-06-04 01:38:24 -05:00
Albert Cheng
0c5809e10b [svn-r18970] Updated with SNL Glory information. 
Removed the retired thunderbird.
 2010-06-03 19:30:24 -05:00
Albert Cheng
209028992d [svn-r18968] Updated with Red Storm information. 2010-06-03 19:20:07 -05:00
Albert Cheng
c9d5997265 [svn-r18966] updated with AIX support information. 2010-06-03 18:46:51 -05:00
Mike McGreevy
dfaf734ac3 [svn-r18960] Purpose: 
Add acknowledgments file to top level of HDF5 1.8.5 distribution.
 2010-06-03 15:08:19 -05:00
Frank Baker
c4a3442497 [svn-r18959] Description: 
Expand discussion of "review-change-click cycle" in configuration step.
 2010-06-03 14:44:47 -05:00
Allen Byrne
a9426c355c [svn-r18955] Corrected name of external libraries 2010-06-03 13:50:51 -05:00
Frank Baker
4343326996 [svn-r18953] Description: 
Editorial review.
 2010-06-03 11:49:21 -05:00
Mike McGreevy
da84f84387 [svn-r18952] Purpose: 
Update to RELEASE.txt clarifying behavior of --disable-largefile flag.
 2010-06-03 10:45:33 -05:00
Allen Byrne
21fd890234 [svn-r18949] Corrected where the static *.mod files are installed to 2010-06-02 16:00:24 -05:00
Allen Byrne
22923a7cac [svn-r18944] Added gcc version to cygwin line 2010-06-02 14:31:32 -05:00
Elena Pourmal
bd2b2cb6e6 [svn-r18941] Maintenance: Update the file with information about Mac Intel and PPC. 2010-06-01 16:35:14 -05:00
Allen Byrne
b69377a727 [svn-r18938] Removed support for MinGW. 2010-06-01 15:26:47 -05:00
Allen Byrne
69b2fbdcba [svn-r18935] Update Cygwin and Windows references 2010-06-01 14:30:07 -05:00
Mike McGreevy
b4a2d511b8 [svn-r18934] Purpose: 
Update RELEASE.txt with compiler information
    and known issues for NCSA Cobalt.
 2010-06-01 14:25:58 -05:00
Allen Byrne
4658ed08b1 [svn-r18931] Update Cygwin install instructions 2010-06-01 14:20:01 -05:00
Mike McGreevy
76fa739de3 [svn-r18921] Update version to 1.8.5-pre2 2010-05-28 09:00:26 -05:00
Larry Knox
57e066c7a3 [svn-r18919] Add $(TEST_PROG) and *.0 to CHECK_CLEANFILES and remove / between ${DESTDIR} and @prefix@ in config/commence.am. This gets propagated to Makefile.in and removes all the program and object files from the examples directories when make check-clean is run. 
Tested amani, jam, linew, CYGWIN
 2010-05-27 17:46:44 -05:00
Larry Knox
0b6531d21f [svn-r18918] Resolve installcheck issues for CYGWIN: 
Remove extra / between ${DESTDIR}/@prefix@
  deal with added .exe for program files.

Tested with h5committest on amani, jam, linew, and with CYGWIN.
 2010-05-27 15:30:51 -05:00
Allen Byrne
110447cb5b [svn-r18912] Added missing fortran library in list of libraries. 
Tested: Windows, local linux
 2010-05-27 11:48:43 -05:00
Larry Knox
24d02aa0e4 [svn-r18909] Updated RELEASE.txt for THG linux and solaris machines. 
Added make install error on FREE_BSD (static only) to known problems in RELEASE.txt.
Fixed install-examples issue for CYGWIN.
Added '_' to sed script for solaris version to avoid losing name of compilers.

Tested on amani, jam, and linew with h5committest.
 2010-05-26 17:39:49 -05:00
Allen Byrne
6649fd04f3 [svn-r18904] Updated with new name of CMake.txt 2010-05-26 11:54:46 -05:00
Allen Byrne
d7e9fb9f36 [svn-r18901] Renamed Cmake specific document, making more general for all platforms. Updated references in other files. 2010-05-26 11:42:03 -05:00
Raymond Lu
8075e3c4da [svn-r18900] I added the information of OpenVMS in the table of supported systems. 
No test is needed.
 2010-05-26 10:26:09 -05:00
Allen Byrne
92bc2a388d [svn-r18896] Added fortran /dbglibs option to fortran compile flags for windows intel fortran case. 
Duplicated windows intel fortran flag block for hl/fortran

Tested: windows
 2010-05-25 16:11:17 -05:00
Albert Cheng
0e8df42d9b [svn-r18893] Improvment: 
Revised the online help page of h5dump to explain the packed bits feature and
added an example too.

Tested: h5committest.
 2010-05-25 15:30:08 -05:00
Allen Byrne
e5eecfd17d [svn-r18891] Enable Packed Bits option as defualt ON 2010-05-25 11:06:15 -05:00
Allen Byrne
3a1b843aa9 [svn-r18888] Update CMake fortran configure/build with changes from community. 
- Add an install rule to copy compiled fortran module files
- Only build the xlatefile utility if testing and tools are enabled
- Don't do MPI HAVE_XXX checks until MPI_FOUND is true
- Install needs H5version.h & H5overflow.h to be copied
- Add debug information flags to debug compile and link lines for win32 Intel compiler
 2010-05-25 10:59:29 -05:00
Allen Byrne
f9e3835c07 [svn-r18887] Add -C {Debug | Release} to ctest command line 2010-05-24 10:13:38 -05:00
Elena Pourmal
1475d2f50d [svn-r18884] Maintenance: Brought fixes for bug 1851 (DS failures on PPC) to 1.8.5 branch 
Platforms tested: juniper-w (Mac PPC), linew (64-bit), jam, amani
 2010-05-22 14:12:17 -05:00
Allen Byrne
cad16e6ffd [svn-r18879] Update testh5diff.bat for --follow-symlinks change 
Tested:  windows
 2010-05-21 16:57:05 -05:00
Jonathan Kim
d7b9893967 [svn-r18875] Purpose: 
Rename '--follow-links' to '--follow-symlinks' 

Description:
    The '--follow-links' option is to follow symbolic links (soft and external).
    Make the name more intuitive and specific to the feature.
    Merged from hdf5 1.8 branch r18874.

Tested:
    jam, amani
 2010-05-21 16:04:21 -05:00
Neil Fortner
79a7bb647d [svn-r18870] Purpose: Fix bug in dataset shrinking algorithm 
Description:
Previously, it was possible for a chunk to be flushed due to chunk operations in
the callback from H5B_iterate in H5D_chunk_prune_by_extent.  Because flushing
the chunk can force it to be reallocated if it is filtered, this can change the
contents of the chunk b-tree in the middle of H5B_iterate.  Because H5B_iterate
uses a locally cached copy of the b-tree, this causes subsequent operations
to be passed incorrect data.  Rewrote H5D_chunk_prune_by_extent to avoid
H5B_iterate entirely.

Also fixed a bug in the dataset expand algorithm that could cause extra chunks
to be created.

Tested: jam, linew, smirom (h5committest)
 2010-05-20 17:09:14 -05:00
Allen Byrne
ad6eab2001 [svn-r18858] Change allocation of buffer to use the specified dimensions to calculate the size of a data buffer. Also removed any initialized values. 
Tested: windows
 2010-05-19 17:00:59 -05:00
Raymond Lu
da660dbc3d [svn-r18852] Albert added more tests for packed bits. I made the change accordingly. 
I tested it for the 1.8 branch, not 1.8.5 yet.
 2010-05-18 14:47:47 -05:00
Allen Byrne
252b5618b0 [svn-r18849] Added packed-bits tests to batch file 
Tested: windows
 2010-05-18 13:34:26 -05:00
Allen Byrne
1c51b0ec6a [svn-r18846] Removed obsolete packed bits tests 2010-05-18 12:31:21 -05:00
Allen Byrne
3b889fc8d0 [svn-r18843] Updated windows information. Added CMake Early Access information. 2010-05-18 10:52:15 -05:00
Mike McGreevy
172556284c [svn-r18842] Changed version to hdf5-1.8.5-pre1 to start pre-release testing. 2010-05-18 10:33:51 -05:00
Larry Knox
a41fb65b7c [svn-r18836] Added code to config files, libhdf5.settings.in and configure.in to add compiler version information for fortran and C++ in the settings file and the configure output for our common compilers on linux, solaris, and mac(gnu only). 
Tested:  amani, jam, linew (h5committest) and with configure on these machines and tejeda.
 2010-05-17 17:23:23 -05:00
Quincey Koziol
b85900177f [svn-r18835] Description: 
Correct function enter macro and add 'done' label, for routine that is
only invoked when configured with --enable-debug=all.

Tested on:
    Mac OS X/32 10.6.3 (amazon) w/debug & production
    (too minor to require h5committest)
 2010-05-17 16:18:46 -05:00