Merge branch 'develop' into vol_dev_headers

This commit is contained in:
Dana Robinson
2019-06-14 14:18:06 -07:00
8 changed files with 278 additions and 30 deletions

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@@ -85,8 +85,8 @@ else
TOOLS_DIR=
endif
SUBDIRS = src $(TESTSERIAL_DIR) $(TESTPARALLEL_DIR) $(TOOLS_DIR) . $(CXX_DIR) \
$(FORTRAN_DIR) $(JAVA_DIR) $(HDF5_HL_DIR)
SUBDIRS = src $(TESTSERIAL_DIR) $(TESTPARALLEL_DIR) bin $(TOOLS_DIR) . \
$(CXX_DIR) $(FORTRAN_DIR) $(JAVA_DIR) $(HDF5_HL_DIR)
DIST_SUBDIRS = src test testpar tools . c++ fortran hl examples java
# Some files generated during configure that should be cleaned

57
bin/Makefile.am Normal file
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@@ -0,0 +1,57 @@
#
# Copyright by The HDF Group.
# Copyright by the Board of Trustees of the University of Illinois.
# All rights reserved.
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the COPYING file, which can be found at the root of the source code
# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
##
## Makefile.am
## Run automake to generate a Makefile.in from this file.
#
# HDF5 Library Makefile(.in)
#
include $(top_srcdir)/config/commence.am
# Include src directory
AM_CPPFLAGS+=-I$(top_srcdir)/src -I$(top_srcdir)/tools/lib
# These are our main targets
bin_SCRIPTS=h5redeploy
# Tell automake to clean h5redeploy script
CLEANFILES=h5redeploy
# These were generated by configure. Remove them only when distclean.
DISTCLEANFILES=h5cc
# All programs rely on hdf5 library and h5tools library
LDADD=$(LIBH5TOOLS) $(LIBHDF5)
# How to build h5redeploy script
h5redeploy: h5redeploy.in
@cp $(srcdir)/$@.in $@
# h5cc needs custom install and uninstall rules, since it may be
# named h5pcc if hdf5 is being built in parallel mode.
if BUILD_PARALLEL_CONDITIONAL
H5CC_NAME=h5pcc
else
H5CC_NAME=h5cc
endif
$(DESTDIR)$(bindir):
echo " $(MKDIR_P) '$(DESTDIR)$(bindir)'"; \
$(MKDIR_P) "$(DESTDIR)$(bindir)" || exit 1;
install-exec-local: $(DESTDIR)$(bindir)
@$(INSTALL) h5cc $(DESTDIR)$(bindir)/$(H5CC_NAME)
uninstall-local:
@$(RM) $(DESTDIR)$(bindir)/$(H5CC_NAME)
include $(top_srcdir)/config/conclude.am

216
bin/h5redeploy.in Normal file
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@@ -0,0 +1,216 @@
#! /bin/sh
#
# Copyright by The HDF Group.
# Copyright by the Board of Trustees of the University of Illinois.
# All rights reserved.
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the COPYING file, which can be found at the root of the source code
# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
#
## Update HDF5 compiler tools after the HDF5 software has been installed ##
## in a new location. ##
## For help page, use "h5redeploy -help" ##
## ##
# Constants definitions
EXIT_SUCCESS=0
EXIT_FAILURE=1
# Function definitions
# show help page
usage() {
# A wonderfully informative "usage" message.
echo "usage: $prog_name [OPTIONS]"
echo " OPTIONS:"
echo " -help|help This help message"
echo " -echo Show all the shell commands executed"
echo " -force No prompt, just do it"
echo " -prefix=DIR New directory to find HDF5 lib/ and include/"
echo " subdirectories [default: current directory]"
echo " -exec-prefix=DIR New directory to find HDF5 lib/"
echo " subdirectory [default: <prefix>]"
echo " -libdir=DIR New directory for the HDF5 lib directory"
echo " [default: <exec-prefix>/lib]"
echo " -includedir=DIR New directory for the HDF5 header files"
echo " [default: <prefix>/include]"
echo " -tool=TOOL Tool to update. TOOL must be in the current"
echo " directory and writable. [default: $h5tools]"
echo " -show Show the commands without executing them"
echo " "
exit $EXIT_FAILURE
}
# display variable values
dump_vars(){
echo "====Showing all variable values====="
echo prefix=$prefix
echo h5tools=$h5tools
echo "====End Showing====="
}
# show actions to be taken
show_action()
{
echo "Update the following tools because they are now installed at a new directory"
for t in $foundtools; do
echo "${t}:"
echo " current setting=`sed -e '/^prefix=/s/prefix=//p' -e d $t`"
echo " new setting="\""$prefix"\"
done
}
# Report Error message
ERROR()
{
echo "***ERROR***"
echo "$1"
}
# Main
#
############################################################################
## Installation directories: ##
## prefix architecture-independent files. ##
## exec_prefix architecture-dependent files, default is <prefix>. ##
## libdir libraries, default is <exec_prefix>/lib. ##
## includedir header files, default is <prefix/include>. ##
## Not used here: ##
## bindir executables, <exec_prefix/bin>. ##
############################################################################
# Initialization
h5tools="h5cc h5pcc h5fc h5pfc h5c++" # possible hdf5 tools
foundtools= # tools found and will be modified
fmode= # force mode, default is off
prefix=
exec_prefix=
libdir=
includedir=
# Parse options
for arg in $@ ; do
case "$arg" in
-prefix=*)
prefix="`echo $arg | cut -f2 -d=`"
;;
-exec-prefix=*)
exec_prefix="`echo $arg | cut -f2 -d=`"
;;
-libdir=*)
libdir="`echo $arg | cut -f2 -d=`"
;;
-includedir=*)
includedir="`echo $arg | cut -f2 -d=`"
;;
-echo)
set -x
;;
-show)
SHOW="echo"
;;
-tool=*)
h5tools="`echo $arg | cut -f2 -d=`"
;;
-help|help)
usage
;;
-force)
fmode=yes
;;
*)
ERROR "Unknown Option($arg)"
usage
exit $EXIT_FAILURE
;;
esac
done
# Set to default value, one above where i am, if not given by user
if [ -z "$prefix" ]; then
prefix=`(cd ..;pwd)`
fi
if [ -z "$exec_prefix" ]; then
exec_prefix='${prefix}' # use single quotes to prevent expansion of $
fi
if [ -z "$libdir" ]; then
libdir='${exec_prefix}'/lib # use single quotes to prevent expansion of $
fi
if [ -z "$includedir" ]; then
includedir='${prefix}'/include # use single quotes to prevent expansion of $
fi
for x in $h5tools; do
if [ -f $x ]; then
foundtools="$foundtools $x"
if [ ! -w $x ]; then
ERROR "h5tool($x) is not writable"
exit $EXIT_FAILURE
fi
fi
done
if [ -z "$foundtools" ]; then
ERROR "found no tools to modify"
exit $EXIT_FAILURE
fi
# Show actions to be taken and get consent
show_action
# Ask confirmation unless fmode is on
if [ x-$fmode = x- ]; then
echo "Continue? (yes/no)"
read ansx
ans=`echo $ansx | tr "[A-Z]" "[a-z]"`
if [ x-$ans != x-yes ]; then
echo ABORT. No tools changed.
exit $EXIT_FAILURE
fi
fi
# Create the update commands
CMDFILE=/tmp/h5redeploy.$$
touch $CMDFILE
chmod 0600 $CMDFILE
echo "/^prefix=/c" >> $CMDFILE
echo prefix=\""$prefix"\" >> $CMDFILE
echo . >> $CMDFILE
echo "/^exec_prefix=/c" >> $CMDFILE
echo exec_prefix=\""$exec_prefix"\" >> $CMDFILE
echo . >> $CMDFILE
echo "/^libdir=/c" >> $CMDFILE
echo libdir=\""$libdir"\" >> $CMDFILE
echo . >> $CMDFILE
echo "/^includedir=/c" >> $CMDFILE
echo includedir=\""$includedir"\" >> $CMDFILE
echo . >> $CMDFILE
(echo w; echo q) >> $CMDFILE
# Update them
if [ "$SHOW" = "echo" ]; then
echo "===Update commands are:===="
cat $CMDFILE
echo "===End Update commands====="
fi
for t in $foundtools; do
echo Update $t ...
COMMAND="ed - $t"
if [ "$SHOW" = "echo" ]; then
echo $COMMAND
else
$COMMAND < $CMDFILE
fi
done
# Cleanup
rm -f $CMDFILE
exit $EXIT_SUCCESS

View File

@@ -3518,7 +3518,6 @@ AM_CONDITIONAL([HAVE_SHARED_CONDITIONAL], [test "X$enable_shared" = "Xyes"])
AC_CONFIG_FILES([src/libhdf5.settings
Makefile
src/Makefile
src/h5cc
test/Makefile
test/H5srcdir_str.h
test/testabort_fail.sh
@@ -3586,6 +3585,8 @@ AC_CONFIG_FILES([src/libhdf5.settings
examples/Makefile
examples/run-c-ex.sh
examples/testh5cc.sh
bin/h5cc
bin/Makefile
c++/Makefile
c++/src/Makefile
c++/src/h5c++

View File

@@ -32,18 +32,10 @@ lib_LTLIBRARIES=libhdf5.la
# Add libtool numbers to the HDF5 library (from config/lt_vers.am)
libhdf5_la_LDFLAGS= -version-info $(LT_VERS_INTERFACE):$(LT_VERS_REVISION):$(LT_VERS_AGE) $(AM_LDFLAGS)
# h5cc needs custom install and uninstall rules, since it may be
# named h5pcc if hdf5 is being built in parallel mode.
if BUILD_PARALLEL_CONDITIONAL
H5CC_NAME=h5pcc
else
H5CC_NAME=h5cc
endif
# H5Tinit.c and H5lib_settings.c are generated files and should be cleaned.
MOSTLYCLEANFILES=H5Tinit.c H5lib_settings.c
# H5pubconf.h is generated by configure, and should be cleaned.
DISTCLEANFILES=H5pubconf.h $(H5CC_NAME)
DISTCLEANFILES=H5pubconf.h
# library sources
libhdf5_la_SOURCES= H5.c H5checksum.c H5dbg.c H5system.c H5timer.c H5trace.c \
@@ -160,8 +152,6 @@ include_HEADERS = hdf5.h H5api_adpt.h H5overflow.h H5pubconf.h H5public.h H5vers
settingsdir=$(libdir)
settings_DATA=libhdf5.settings
bin_SCRIPTS=$(H5CC_NAME)
# Number format detection
# The LD_LIBRARY_PATH setting is a kludge.
# Things should have been all set during H5detect making.
@@ -220,10 +210,5 @@ trace: $(libhdf5_la_SOURCES)
fi; \
done
#install-exec-local:
# @$(INSTALL) h5cc $(DESTDIR)$(bindir)/$(H5CC_NAME)
#uninstall-local:
# @$(RM) $(DESTDIR)$(bindir)/$(H5CC_NAME)
include $(top_srcdir)/config/conclude.am

View File

@@ -23,7 +23,6 @@ AM_CPPFLAGS+=-I$(top_srcdir)/src -I$(top_srcdir)/tools/lib
# These are our main targets, the tools
bin_PROGRAMS=h5debug h5repart h5mkgrp h5clear
bin_SCRIPTS=h5redeploy
# Add h5debug, h5repart, and h5mkgrp specific linker flags here
h5debug_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS)
@@ -31,17 +30,7 @@ h5repart_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS)
h5mkgrp_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS)
h5clear_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS)
# Tell automake to clean h5redeploy script
CLEANFILES=h5redeploy
# These were generated by configure. Remove them only when distclean.
DISTCLEANFILES=h5cc
# All programs rely on hdf5 library and h5tools library
LDADD=$(LIBH5TOOLS) $(LIBHDF5)
# How to build h5redeploy script
h5redeploy: h5redeploy.in
@cp $(srcdir)/$@.in $@
include $(top_srcdir)/config/conclude.am