[svn-r635] Changes since 19980831
---------------------- ./Makefile.in Running `make distclean' will not fail if one of the subdirectories has already been cleaned. ./config/BlankForm ./config/irix5.3 Cleaned it up more. Added better support/documentation for systems that have more than one compiler. ./config/alpha-dec-osf4.0 [NEW] Added a new config file as a result of testing on Jim Reus's machine. ./test/chunk.c Scaled down the testing range so we can actually run it interactively. ./tools/h5import.c Included <unistd.h> to get rid of warning for close(). ./src/H5detect.c Seg-faults on Linux for some reason when NDEBUG is defined, so I just undef it at the top of the source. ./test/big.c Added a fflush(). ./tools/h5ls.c The `-d' flag now works even when `-v' isn't specified. ./examples/h5_chunk_read.c ./examples/h5_compound.c ./examples/h5_extend_write.c ./examples/h5_group.c ./examples/h5_read.c ./examples/h5_write.c Indented according to hdf5 standards. Fixed compiler warnings
This commit is contained in:
Robb Matzke
18
Makefile.in
18
Makefile.in
@@ -76,23 +76,23 @@ H5Tinit.c:
|
||||
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||||
clean mostlyclean:
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||||
@@SETX@; for d in $(SUBDIRS); do \
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(cd $$d && $(MAKE) $@) || exit 1; \
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||||
(cd $$d && $(MAKE) $@); \
|
||||
done
|
||||
|
||||
distclean:
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||||
@@SETX@; for d in $(SUBDIRS); do \
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||||
(cd $$d && $(MAKE) $@) || exit 1; \
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||||
(cd $$d && $(MAKE) $@); \
|
||||
done
|
||||
$(RM) config/commence config/conclude config/depend
|
||||
$(RM) config.cache config.log config.status src/H5config.h
|
||||
$(RM) Makefile
|
||||
$(CP) Makefile.dist Makefile
|
||||
-$(RM) config/commence config/conclude config/depend
|
||||
-$(RM) config.cache config.log config.status src/H5config.h
|
||||
-$(RM) Makefile
|
||||
-$(CP) Makefile.dist Makefile
|
||||
|
||||
maintainer-clean:
|
||||
@echo "This command is intented for maintainers to use;"
|
||||
@echo "it deletes files that may require special tools to rebuild."
|
||||
@@SETX@; for d in $(SUBDIRS); do \
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||||
(cd $$d && $(MAKE) $@) || exit 1; \
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||||
(cd $$d && $(MAKE) $@); \
|
||||
done
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||||
$(RM) config.cache config.log config.status src/H5config.h
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$(RM) configure src/H5config.h.in
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-$(RM) config.cache config.log config.status src/H5config.h
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-$(RM) configure src/H5config.h.in
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2
README
2
README
@@ -1,4 +1,4 @@
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This is hdf5-1.0.75 released on Fri Aug 28 16:07:31 EDT 1998
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This is hdf5-1.0.75 released on Mon Aug 31 11:01:09 CDT 1998
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Please refer to the INSTALL file for installation instructions.
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------------------------------------------------------------------------------
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113
config/BlankForm
113
config/BlankForm
@@ -9,31 +9,96 @@
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# Compiler flags. The CPPFLAGS values should not include package debug
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# flags like `-DH5G_DEBUG' since these are added with the
|
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# `--enable-debug' switch of configure.
|
||||
|
||||
# Sometimes a particular compiler must be used. If that's the case
|
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# then uncomment the following line. Otherwise the main configure
|
||||
# script will try to detect the compiler automatically.
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#CC=gcc
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|
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# What must *always* be present for things to compile correctly?
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#CFLAGS="$CFLAGS -ansi"
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#CPPFLAGS="$CPPFLAGS -I."
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|
||||
# What compiler flags should be used for code development?
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DEBUG_CFLAGS=-g
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DEBUG_CPPFLAGS=
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||||
|
||||
# What compiler flags should be used for building a production
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||||
# library?
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PROD_CFLAGS=-O
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PROD_CPPFLAGS=
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||||
|
||||
# What compiler flags enable code profiling?
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PROFILE_CFLAGS=-pg
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PROFILE_CPPFLAGS=
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||||
|
||||
|
||||
#----------------------------------------------------------------------------
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||||
|
||||
|
||||
# Choosing a C Compiler
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# ---------------------
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||||
#
|
||||
# Configre will use the value of environment variable `CC' if it is
|
||||
# set. If not then configure checks for a working GNU `gcc' followed
|
||||
# by other common compiler names. If a default compiler is desired
|
||||
# then uncomment the following line, replacing `gcc' with the name of
|
||||
# the default compiler.
|
||||
|
||||
#CC=${CC:-gcc}
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||||
|
||||
|
||||
|
||||
|
||||
# C Compiler and Preprocessor Flags
|
||||
# ---------------------------------
|
||||
#
|
||||
# Flags that end with `_CFLAGS' are always passed to the compiler.
|
||||
# Flags that end with `_CPPFLAGS' are passed to the compiler when
|
||||
# compiling but not when linking.
|
||||
#
|
||||
# DEBUG_CFLAGS Flags to pass to the compiler to create a
|
||||
# DEBUG_CPPFLAGS library suitable for use with debugging
|
||||
# tools. Usually this list will exclude
|
||||
# optimization switches (like `-O') and include
|
||||
# switches that turn on symbolic debugging
|
||||
# support (like `-g').
|
||||
#
|
||||
# PROD_CFLAGS Flags to pass to the compiler to create a
|
||||
# PROD_CPPFLAGS production version of the library. These
|
||||
# usualy exclude symbolic debugging switches
|
||||
# (like `-g') and include optimization switches
|
||||
# (like `-O').
|
||||
#
|
||||
# PROFILE_CFLAGS Flags to pass to the compiler to create a
|
||||
# PROFILE_CPPFLAGS library suitable for performance testing (like
|
||||
# `-pg'). This may or may not include debugging
|
||||
# or production flags.
|
||||
#
|
||||
# CFLAGS Flags can be added to this variable which
|
||||
# might already be partially initialized. These
|
||||
# flags will always be passed to the compiler
|
||||
# and should include switches to turn on full
|
||||
# warnings. HDF5 attempts to be ANSI and Posix
|
||||
# compliant and employ good programming
|
||||
# practices resulting in few if any
|
||||
# warnings.
|
||||
#
|
||||
# Note: Warning flags do not have to be added to CFLAGS
|
||||
# variable if the compiler is the GNU gcc
|
||||
# compiler or a descendent of gcc.
|
||||
#
|
||||
# Note: The CFLAGS should contains *something* or else
|
||||
# configure will probably add `-g'. For most
|
||||
# systems this isn't a problem but some systems
|
||||
# will disable optimizations in favor of the
|
||||
# `-g'.
|
||||
#
|
||||
#
|
||||
|
||||
case "$CC" in
|
||||
*gcc*)
|
||||
CFLAGS="$CFLAGS -Wsign-compare" #Only works for some versions
|
||||
DEBUG_CFLAGS="-g -fverbose-asm"
|
||||
DEBUG_CPPFLAGS="-DH5F_OPT_SEEK=0 -DH5F_LOW_DFLT=H5F_LOW_SEC2"
|
||||
PROD_CFLAGS="-mcpu=pentiumpro -march=pentiumpro -O3 -finline-functions -malign-double -fomit-frame-pointer -fschedule-insns2"
|
||||
PROD_CPPFLAGS=
|
||||
PROFILE_CFLAGS="-pg"
|
||||
PROFILE_CPPFLAGS=
|
||||
;;
|
||||
|
||||
*)
|
||||
CFLAGS="$CFLAGS -ansi"
|
||||
DEBUG_FLAGS="-g"
|
||||
DEBUG_CPPFLAGS="-DH5F_OPT_SEEK=0 -DH5F_LOW_DFLT=H5F_LOW_SEC2"
|
||||
PROD_CFLAGS="-O"
|
||||
PROD_CPPFLAGS=
|
||||
PROFILE_CFLAGS="-pg"
|
||||
PROFILE_CPPFLAGS=
|
||||
;;
|
||||
esac
|
||||
|
||||
|
||||
|
||||
# Overriding Configure Tests
|
||||
# --------------------------
|
||||
#
|
||||
# Values for overriding configuration tests when cross compiling.
|
||||
# This includes compiling on some machines where the serial front end
|
||||
# compiles for a parallel back end.
|
||||
|
||||
104
config/alpha-dec-osf4.0
Normal file
104
config/alpha-dec-osf4.0
Normal file
@@ -0,0 +1,104 @@
|
||||
# -*- shell-script -*-
|
||||
#
|
||||
# This file is part of the HDF5 build script. It is processed shortly
|
||||
# after configure starts and defines, among other things, flags for
|
||||
# the various compile modes.
|
||||
|
||||
|
||||
#----------------------------------------------------------------------------
|
||||
# Compiler flags. The CPPFLAGS values should not include package debug
|
||||
# flags like `-DH5G_DEBUG' since these are added with the
|
||||
# `--enable-debug' switch of configure.
|
||||
#----------------------------------------------------------------------------
|
||||
|
||||
|
||||
# Choosing a C Compiler
|
||||
# ---------------------
|
||||
#
|
||||
# Configre will use the value of environment variable `CC' if it is
|
||||
# set. If not then configure checks for a working GNU `gcc' followed
|
||||
# by other common compiler names. If a default compiler is desired
|
||||
# then uncomment the following line, replacing `gcc' with the name of
|
||||
# the default compiler.
|
||||
|
||||
#CC=${CC:-gcc}
|
||||
|
||||
|
||||
|
||||
|
||||
# C Compiler and Preprocessor Flags
|
||||
# ---------------------------------
|
||||
#
|
||||
# Flags that end with `_CFLAGS' are always passed to the compiler.
|
||||
# Flags that end with `_CPPFLAGS' are passed to the compiler when
|
||||
# compiling but not when linking.
|
||||
#
|
||||
# DEBUG_CFLAGS Flags to pass to the compiler to create a
|
||||
# DEBUG_CPPFLAGS library suitable for use with debugging
|
||||
# tools. Usually this list will exclude
|
||||
# optimization switches (like `-O') and include
|
||||
# switches that turn on symbolic debugging
|
||||
# support (like `-g').
|
||||
#
|
||||
# PROD_CFLAGS Flags to pass to the compiler to create a
|
||||
# PROD_CPPFLAGS production version of the library. These
|
||||
# usualy exclude symbolic debugging switches
|
||||
# (like `-g') and include optimization switches
|
||||
# (like `-O').
|
||||
#
|
||||
# PROFILE_CFLAGS Flags to pass to the compiler to create a
|
||||
# PROFILE_CPPFLAGS library suitable for performance testing (like
|
||||
# `-pg'). This may or may not include debugging
|
||||
# or production flags.
|
||||
#
|
||||
# CFLAGS Flags can be added to this variable which
|
||||
# might already be partially initialized. These
|
||||
# flags will always be passed to the compiler
|
||||
# and should include switches to turn on full
|
||||
# warnings. HDF5 attempts to be ANSI and Posix
|
||||
# compliant and employ good programming
|
||||
# practices resulting in few if any
|
||||
# warnings. Note: warning flags do not have to
|
||||
# be added to this variable if the compiler is
|
||||
# the GNU gcc compiler or a descendent of gcc.
|
||||
#
|
||||
|
||||
case "$CC" in
|
||||
*gcc*)
|
||||
CFLAGS="$CFLAGS -Wsign-compare" #Only works for some versions
|
||||
DEBUG_CFLAGS="-g -fverbose-asm"
|
||||
DEBUG_CPPFLAGS="-DH5F_OPT_SEEK=0 -DH5F_LOW_DFLT=H5F_LOW_SEC2"
|
||||
PROD_CFLAGS="-O3"
|
||||
PROD_CPPFLAGS=
|
||||
PROFILE_CFLAGS="-pg"
|
||||
PROFILE_CPPFLAGS=
|
||||
;;
|
||||
|
||||
*)
|
||||
#CFLAGS="$CFLAGS"
|
||||
DEBUG_CFLAGS="-g"
|
||||
DEBUG_CPPFLAGS="-DH5F_OPT_SEEK=0 -DH5F_LOW_DFLT=H5F_LOW_SEC2"
|
||||
PROD_CFLAGS="-g0 -fast -tune host"
|
||||
PROD_CPPFLAGS=
|
||||
PROFILE_CFLAGS="-pg"
|
||||
PROFILE_CPPFLAGS=
|
||||
;;
|
||||
esac
|
||||
|
||||
|
||||
|
||||
# Overriding Configure Tests
|
||||
# --------------------------
|
||||
#
|
||||
# Values for overriding configuration tests when cross compiling.
|
||||
# This includes compiling on some machines where the serial front end
|
||||
# compiles for a parallel back end.
|
||||
|
||||
# Set this to `yes' or `no' depending on whether the target is big
|
||||
# endian or little endian.
|
||||
#ac_cv_c_bigendian=${ac_cv_c_bigendian='yes'}
|
||||
|
||||
# Set this to the width required by printf() to print type `long
|
||||
# long'. For instance, if the format would be `%lld' then set it to
|
||||
# `ll' or if the format would be `%qd' set it to `q'.
|
||||
#hdf5_cv_printf_ll=${hdf5_cv_printf_ll='ll'}
|
||||
@@ -3,6 +3,11 @@
|
||||
# This file is part of the HDF5 build script. It is processed shortly
|
||||
# after configure starts and defines, among other things, flags for
|
||||
# the various compile modes.
|
||||
#
|
||||
# Modifications:
|
||||
# Robb Matzke, 1998-08-31
|
||||
# Removed `-ansi' from the CFLAGS because it caused sigaction()
|
||||
# to not be compiled.
|
||||
|
||||
|
||||
#----------------------------------------------------------------------------
|
||||
@@ -13,38 +18,27 @@
|
||||
# Sometimes a particular compiler must be used. If that's the case
|
||||
# then uncomment the following line. Otherwise the main configure
|
||||
# script will try to detect the compiler automatically.
|
||||
CC=cc
|
||||
CC=${CC:-cc}
|
||||
RANLIB=:
|
||||
|
||||
# What must *always* be present for things to compile correctly?
|
||||
CFLAGS="$CFLAGS -ansi -fullwarn -woff 799"
|
||||
#CPPFLAGS="$CPPFLAGS -I."
|
||||
|
||||
# What compiler flags should be used for code development?
|
||||
DEBUG_CFLAGS=-g
|
||||
DEBUG_CPPFLAGS=
|
||||
|
||||
# What compiler flags should be used for building a production
|
||||
# library?
|
||||
PROD_CFLAGS=-O
|
||||
PROD_CPPFLAGS=
|
||||
|
||||
# What compiler flags enable code profiling?
|
||||
PROFILE_CFLAGS=-pg
|
||||
PROFILE_CPPFLAGS=
|
||||
|
||||
|
||||
#----------------------------------------------------------------------------
|
||||
# Values for overriding configuration tests when cross compiling.
|
||||
# This includes compiling on some machines where the serial front end
|
||||
# compiles for a parallel back end.
|
||||
|
||||
# Set this to `yes' or `no' depending on whether the target is big
|
||||
# endian or little endian.
|
||||
#ac_cv_c_bigendian=${ac_cv_c_bigendian='yes'}
|
||||
|
||||
# Set this to the width required by printf() to print type `long
|
||||
# long'. For instance, if the format would be `%lld' then set it to
|
||||
# `ll' or if the format would be `%qd' set it to `q'.
|
||||
#hdf5_cv_printf_ll=${hdf5_cv_printf_ll='ll'}
|
||||
case $CC in
|
||||
*gcc*)
|
||||
CFLAGS="$CFLAGS -ansi"
|
||||
DEBUG_CFLAGS="-g -fverbose-asm"
|
||||
DEBUG_CPPFLAGS="-DH5F_LOW_DFLT=H5F_LOW_SEC2"
|
||||
PROD_CFLAGS="-O3 -finline-functions"
|
||||
PROD_CPPFLAGS=
|
||||
PROFILE_CFLAGS=-pg
|
||||
PROFILE_CPPFLAGS=
|
||||
;;
|
||||
*)
|
||||
CFLAGS="$CFLAGS -fullwarn -prototypes -woff 799"
|
||||
DEBUG_CFLAGS=-g
|
||||
DEBUG_CPPFLAGS=
|
||||
PROD_CFLAGS=-O
|
||||
PROD_CPPFLAGS=
|
||||
PROFILE_CFLAGS=-pg
|
||||
PROFILE_CPPFLAGS=
|
||||
;;
|
||||
esac
|
||||
|
||||
|
||||
@@ -12,177 +12,177 @@
|
||||
#define NX 10
|
||||
#define NY 5
|
||||
|
||||
main ()
|
||||
int
|
||||
main (void)
|
||||
{
|
||||
hid_t file; /* handles */
|
||||
hid_t datatype, dataset;
|
||||
hid_t filespace;
|
||||
hid_t memspace;
|
||||
hid_t cparms;
|
||||
H5T_class_t class; /* data type class */
|
||||
size_t elem_size; /* size of the data element
|
||||
stored in file */
|
||||
hsize_t dims[2]; /* dataset and chunk dimensions */
|
||||
hsize_t chunk_dims[2];
|
||||
hsize_t col_dims[1];
|
||||
size_t size[2];
|
||||
hsize_t count[2];
|
||||
hsize_t offset[2];
|
||||
hid_t file; /* handles */
|
||||
hid_t dataset;
|
||||
hid_t filespace;
|
||||
hid_t memspace;
|
||||
hid_t cparms;
|
||||
hsize_t dims[2]; /* dataset and chunk dimensions*/
|
||||
hsize_t chunk_dims[2];
|
||||
hsize_t col_dims[1];
|
||||
hsize_t count[2];
|
||||
hsize_t offset[2];
|
||||
|
||||
herr_t status, status_n;
|
||||
herr_t status, status_n;
|
||||
|
||||
int data_out[NX][NY]; /* buffer for dataset to be read */
|
||||
int chunk_out[2][5]; /* buffer for chunk to be read */
|
||||
int column[10]; /* buffer for column to be read */
|
||||
int i, j, rank, rank_chunk;
|
||||
int data_out[NX][NY]; /* buffer for dataset to be read */
|
||||
int chunk_out[2][5]; /* buffer for chunk to be read */
|
||||
int column[10]; /* buffer for column to be read */
|
||||
int rank, rank_chunk;
|
||||
hsize_t i, j;
|
||||
|
||||
|
||||
|
||||
/*
|
||||
* Open the file and the dataset.
|
||||
*/
|
||||
file = H5Fopen(FILE, H5F_ACC_RDONLY, H5P_DEFAULT);
|
||||
dataset = H5Dopen(file, DATASETNAME);
|
||||
/*
|
||||
* Open the file and the dataset.
|
||||
*/
|
||||
file = H5Fopen(FILE, H5F_ACC_RDONLY, H5P_DEFAULT);
|
||||
dataset = H5Dopen(file, DATASETNAME);
|
||||
|
||||
/*
|
||||
* Get dataset rank and dimension.
|
||||
*/
|
||||
|
||||
filespace = H5Dget_space(dataset); /* Get filespace handle first. */
|
||||
rank = H5Sextent_ndims(filespace);
|
||||
status_n = H5Sextent_dims(filespace, dims, NULL);
|
||||
printf("dataset rank %d, dimensions %d x %d \n", rank, dims[0], dims[1]);
|
||||
/*
|
||||
* Get dataset rank and dimension.
|
||||
*/
|
||||
|
||||
/*
|
||||
* Get creation properties list.
|
||||
*/
|
||||
cparms = H5Dget_create_plist(dataset); /* Get properties handle first. */
|
||||
filespace = H5Dget_space(dataset); /* Get filespace handle first. */
|
||||
rank = H5Sextent_ndims(filespace);
|
||||
status_n = H5Sextent_dims(filespace, dims, NULL);
|
||||
printf("dataset rank %d, dimensions %lu x %lu\n",
|
||||
rank, (unsigned long)(dims[0]), (unsigned long)(dims[1]));
|
||||
|
||||
/*
|
||||
* Check if dataset is chunked.
|
||||
*/
|
||||
if (H5D_CHUNKED == H5Pget_layout(cparms)) {
|
||||
/*
|
||||
* Get creation properties list.
|
||||
*/
|
||||
cparms = H5Dget_create_plist(dataset); /* Get properties handle first. */
|
||||
|
||||
/*
|
||||
* Get chunking information: rank and dimensions
|
||||
*/
|
||||
rank_chunk = H5Pget_chunk(cparms, 2, chunk_dims);
|
||||
printf("chunk rank %d, dimensions %d x %d \n", rank_chunk,
|
||||
chunk_dims[0], chunk_dims[1]);
|
||||
}
|
||||
/*
|
||||
* Check if dataset is chunked.
|
||||
*/
|
||||
if (H5D_CHUNKED == H5Pget_layout(cparms)) {
|
||||
|
||||
/*
|
||||
* Get chunking information: rank and dimensions
|
||||
*/
|
||||
rank_chunk = H5Pget_chunk(cparms, 2, chunk_dims);
|
||||
printf("chunk rank %d, dimensions %lu x %lu\n", rank_chunk,
|
||||
(unsigned long)(chunk_dims[0]), (unsigned long)(chunk_dims[1]));
|
||||
}
|
||||
|
||||
/*
|
||||
* Define the memory space to read dataset.
|
||||
*/
|
||||
memspace = H5Screate_simple(RANK,dims,NULL);
|
||||
/*
|
||||
* Define the memory space to read dataset.
|
||||
*/
|
||||
memspace = H5Screate_simple(RANK,dims,NULL);
|
||||
|
||||
/*
|
||||
* Read dataset back and display.
|
||||
*/
|
||||
status = H5Dread(dataset, H5T_NATIVE_INT, memspace, filespace,
|
||||
H5P_DEFAULT, data_out);
|
||||
/*
|
||||
* Read dataset back and display.
|
||||
*/
|
||||
status = H5Dread(dataset, H5T_NATIVE_INT, memspace, filespace,
|
||||
H5P_DEFAULT, data_out);
|
||||
printf("\n");
|
||||
printf("Dataset: \n");
|
||||
for (j = 0; j < dims[0]; j++) {
|
||||
for (i = 0; i < dims[1]; i++) printf("%d ", data_out[j][i]);
|
||||
for (j = 0; j < dims[0]; j++) {
|
||||
for (i = 0; i < dims[1]; i++) printf("%d ", data_out[j][i]);
|
||||
printf("\n");
|
||||
}
|
||||
|
||||
/*
|
||||
* dataset rank 2, dimensions 10 x 5
|
||||
* chunk rank 2, dimensions 2 x 5
|
||||
|
||||
* Dataset:
|
||||
* 1 1 1 3 3
|
||||
* 1 1 1 3 3
|
||||
* 1 1 1 0 0
|
||||
* 2 0 0 0 0
|
||||
* 2 0 0 0 0
|
||||
* 2 0 0 0 0
|
||||
* 2 0 0 0 0
|
||||
* 2 0 0 0 0
|
||||
* 2 0 0 0 0
|
||||
* 2 0 0 0 0
|
||||
*/
|
||||
|
||||
/*
|
||||
* Read the third column from the dataset.
|
||||
* First define memory dataspace, then define hyperslab
|
||||
* and read it into column array.
|
||||
*/
|
||||
col_dims[0] = 10;
|
||||
memspace = H5Screate_simple(RANKC, col_dims, NULL);
|
||||
|
||||
/*
|
||||
* Define the column (hyperslab) to read.
|
||||
*/
|
||||
offset[0] = 0;
|
||||
offset[1] = 2;
|
||||
count[0] = 10;
|
||||
count[1] = 1;
|
||||
status = H5Sselect_hyperslab(filespace, H5S_SELECT_SET, offset, NULL,
|
||||
count, NULL);
|
||||
status = H5Dread(dataset, H5T_NATIVE_INT, memspace, filespace,
|
||||
H5P_DEFAULT, column);
|
||||
printf("\n");
|
||||
}
|
||||
printf("Third column: \n");
|
||||
for (i = 0; i < 10; i++) {
|
||||
printf("%d \n", column[i]);
|
||||
}
|
||||
|
||||
/*
|
||||
dataset rank 2, dimensions 10 x 5
|
||||
chunk rank 2, dimensions 2 x 5
|
||||
/*
|
||||
* Third column:
|
||||
* 1
|
||||
* 1
|
||||
* 1
|
||||
* 0
|
||||
* 0
|
||||
* 0
|
||||
* 0
|
||||
* 0
|
||||
* 0
|
||||
* 0
|
||||
*/
|
||||
|
||||
Dataset:
|
||||
1 1 1 3 3
|
||||
1 1 1 3 3
|
||||
1 1 1 0 0
|
||||
2 0 0 0 0
|
||||
2 0 0 0 0
|
||||
2 0 0 0 0
|
||||
2 0 0 0 0
|
||||
2 0 0 0 0
|
||||
2 0 0 0 0
|
||||
2 0 0 0 0
|
||||
*/
|
||||
/*
|
||||
* Define the memory space to read a chunk.
|
||||
*/
|
||||
memspace = H5Screate_simple(rank_chunk,chunk_dims,NULL);
|
||||
|
||||
/*
|
||||
* Read the third column from the dataset.
|
||||
* First define memory dataspace, then define hyperslab
|
||||
* and read it into column array.
|
||||
*/
|
||||
col_dims[0] = 10;
|
||||
memspace = H5Screate_simple(RANKC, col_dims, NULL);
|
||||
/*
|
||||
* Define chunk in the file (hyperslab) to read.
|
||||
*/
|
||||
offset[0] = 2;
|
||||
offset[1] = 0;
|
||||
count[0] = chunk_dims[0];
|
||||
count[1] = chunk_dims[1];
|
||||
status = H5Sselect_hyperslab(filespace, H5S_SELECT_SET, offset, NULL,
|
||||
count, NULL);
|
||||
|
||||
/*
|
||||
* Define the column (hyperslab) to read.
|
||||
*/
|
||||
offset[0] = 0;
|
||||
offset[1] = 2;
|
||||
count[0] = 10;
|
||||
count[1] = 1;
|
||||
status = H5Sselect_hyperslab(filespace, H5S_SELECT_SET, offset, NULL,
|
||||
count, NULL);
|
||||
status = H5Dread(dataset, H5T_NATIVE_INT, memspace, filespace,
|
||||
H5P_DEFAULT, column);
|
||||
printf("\n");
|
||||
printf("Third column: \n");
|
||||
for (i = 0; i < 10; i++) {
|
||||
printf("%d \n", column[i]);
|
||||
}
|
||||
|
||||
/*
|
||||
|
||||
Third column:
|
||||
1
|
||||
1
|
||||
1
|
||||
0
|
||||
0
|
||||
0
|
||||
0
|
||||
0
|
||||
0
|
||||
0
|
||||
*/
|
||||
|
||||
/*
|
||||
* Define the memory space to read a chunk.
|
||||
*/
|
||||
memspace = H5Screate_simple(rank_chunk,chunk_dims,NULL);
|
||||
|
||||
/*
|
||||
* Define chunk in the file (hyperslab) to read.
|
||||
*/
|
||||
offset[0] = 2;
|
||||
offset[1] = 0;
|
||||
count[0] = chunk_dims[0];
|
||||
count[1] = chunk_dims[1];
|
||||
status = H5Sselect_hyperslab(filespace, H5S_SELECT_SET, offset, NULL,
|
||||
count, NULL);
|
||||
|
||||
/*
|
||||
* Read chunk back and display.
|
||||
*/
|
||||
status = H5Dread(dataset, H5T_NATIVE_INT, memspace, filespace,
|
||||
H5P_DEFAULT, chunk_out);
|
||||
/*
|
||||
* Read chunk back and display.
|
||||
*/
|
||||
status = H5Dread(dataset, H5T_NATIVE_INT, memspace, filespace,
|
||||
H5P_DEFAULT, chunk_out);
|
||||
printf("\n");
|
||||
printf("Chunk: \n");
|
||||
for (j = 0; j < chunk_dims[0]; j++) {
|
||||
for (i = 0; i < chunk_dims[1]; i++) printf("%d ", chunk_out[j][i]);
|
||||
printf("\n");
|
||||
}
|
||||
/*
|
||||
Chunk:
|
||||
1 1 1 0 0
|
||||
2 0 0 0 0
|
||||
*/
|
||||
for (j = 0; j < chunk_dims[0]; j++) {
|
||||
for (i = 0; i < chunk_dims[1]; i++) printf("%d ", chunk_out[j][i]);
|
||||
printf("\n");
|
||||
}
|
||||
/*
|
||||
* Chunk:
|
||||
* 1 1 1 0 0
|
||||
* 2 0 0 0 0
|
||||
*/
|
||||
|
||||
/*
|
||||
* Close/release resources.
|
||||
*/
|
||||
H5Pclose(cparms);
|
||||
H5Dclose(dataset);
|
||||
H5Sclose(filespace);
|
||||
H5Sclose(memspace);
|
||||
H5Fclose(file);
|
||||
/*
|
||||
* Close/release resources.
|
||||
*/
|
||||
H5Pclose(cparms);
|
||||
H5Dclose(dataset);
|
||||
H5Sclose(filespace);
|
||||
H5Sclose(memspace);
|
||||
H5Fclose(file);
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
@@ -11,142 +11,143 @@
|
||||
#define LENGTH 10
|
||||
#define RANK 1
|
||||
|
||||
main()
|
||||
|
||||
int
|
||||
main(void)
|
||||
{
|
||||
|
||||
|
||||
/* First structure and dataset*/
|
||||
typedef struct s1_t {
|
||||
int a;
|
||||
float b;
|
||||
double c;
|
||||
} s1_t;
|
||||
s1_t s1[LENGTH];
|
||||
hid_t s1_tid; /* File datatype hadle */
|
||||
/* First structure and dataset*/
|
||||
typedef struct s1_t {
|
||||
int a;
|
||||
float b;
|
||||
double c;
|
||||
} s1_t;
|
||||
s1_t s1[LENGTH];
|
||||
hid_t s1_tid; /* File datatype hadle */
|
||||
|
||||
/* Second structure (subset of s1_t) and dataset*/
|
||||
typedef struct s2_t {
|
||||
double c;
|
||||
int a;
|
||||
} s2_t;
|
||||
s2_t s2[LENGTH];
|
||||
hid_t s2_tid; /* Memory datatype handle */
|
||||
/* Second structure (subset of s1_t) and dataset*/
|
||||
typedef struct s2_t {
|
||||
double c;
|
||||
int a;
|
||||
} s2_t;
|
||||
s2_t s2[LENGTH];
|
||||
hid_t s2_tid; /* Memory datatype handle */
|
||||
|
||||
/* Third "structure" ( will be used to read float field of s1) */
|
||||
hid_t s3_tid; /* Memory datatype handle */
|
||||
float s3[LENGTH];
|
||||
/* Third "structure" ( will be used to read float field of s1) */
|
||||
hid_t s3_tid; /* Memory datatype handle */
|
||||
float s3[LENGTH];
|
||||
|
||||
int i;
|
||||
hid_t file, datatype, dataset, space; /* Handles */
|
||||
herr_t status;
|
||||
hsize_t dim[] = {LENGTH}; /* Dataspace dimensions */
|
||||
int i;
|
||||
hid_t file, dataset, space; /* Handles */
|
||||
herr_t status;
|
||||
hsize_t dim[] = {LENGTH}; /* Dataspace dimensions */
|
||||
|
||||
|
||||
/*
|
||||
* Initialize the data
|
||||
*/
|
||||
for (i = 0; i< LENGTH; i++) {
|
||||
/*
|
||||
* Initialize the data
|
||||
*/
|
||||
for (i = 0; i< LENGTH; i++) {
|
||||
s1[i].a = i;
|
||||
s1[i].b = i*i;
|
||||
s1[i].c = 1./(i+1);
|
||||
}
|
||||
}
|
||||
|
||||
/*
|
||||
* Create the data space.
|
||||
*/
|
||||
space = H5Screate_simple(RANK, dim, NULL);
|
||||
/*
|
||||
* Create the data space.
|
||||
*/
|
||||
space = H5Screate_simple(RANK, dim, NULL);
|
||||
|
||||
/*
|
||||
* Create the file.
|
||||
*/
|
||||
file = H5Fcreate(FILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
|
||||
/*
|
||||
* Create the file.
|
||||
*/
|
||||
file = H5Fcreate(FILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
|
||||
|
||||
/*
|
||||
* Create the memory data type.
|
||||
*/
|
||||
s1_tid = H5Tcreate (H5T_COMPOUND, sizeof(s1_t));
|
||||
H5Tinsert(s1_tid, "a_name", HOFFSET(s1_t, a), H5T_NATIVE_INT);
|
||||
H5Tinsert(s1_tid, "c_name", HOFFSET(s1_t, c), H5T_NATIVE_DOUBLE);
|
||||
H5Tinsert(s1_tid, "b_name", HOFFSET(s1_t, b), H5T_NATIVE_FLOAT);
|
||||
/*
|
||||
* Create the memory data type.
|
||||
*/
|
||||
s1_tid = H5Tcreate (H5T_COMPOUND, sizeof(s1_t));
|
||||
H5Tinsert(s1_tid, "a_name", HOFFSET(s1_t, a), H5T_NATIVE_INT);
|
||||
H5Tinsert(s1_tid, "c_name", HOFFSET(s1_t, c), H5T_NATIVE_DOUBLE);
|
||||
H5Tinsert(s1_tid, "b_name", HOFFSET(s1_t, b), H5T_NATIVE_FLOAT);
|
||||
|
||||
/*
|
||||
* Create the dataset.
|
||||
*/
|
||||
dataset = H5Dcreate(file, DATASETNAME, s1_tid, space, H5P_DEFAULT);
|
||||
/*
|
||||
* Create the dataset.
|
||||
*/
|
||||
dataset = H5Dcreate(file, DATASETNAME, s1_tid, space, H5P_DEFAULT);
|
||||
|
||||
/*
|
||||
* Wtite data to the dataset;
|
||||
*/
|
||||
status = H5Dwrite(dataset, s1_tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, s1);
|
||||
/*
|
||||
* Wtite data to the dataset;
|
||||
*/
|
||||
status = H5Dwrite(dataset, s1_tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, s1);
|
||||
|
||||
/*
|
||||
* Release resources
|
||||
*/
|
||||
H5Tclose(s1_tid);
|
||||
H5Sclose(space);
|
||||
H5Dclose(dataset);
|
||||
H5Fclose(file);
|
||||
/*
|
||||
* Release resources
|
||||
*/
|
||||
H5Tclose(s1_tid);
|
||||
H5Sclose(space);
|
||||
H5Dclose(dataset);
|
||||
H5Fclose(file);
|
||||
|
||||
/*
|
||||
* Open the file and the dataset.
|
||||
*/
|
||||
file = H5Fopen(FILE, H5F_ACC_RDONLY, H5P_DEFAULT);
|
||||
/*
|
||||
* Open the file and the dataset.
|
||||
*/
|
||||
file = H5Fopen(FILE, H5F_ACC_RDONLY, H5P_DEFAULT);
|
||||
|
||||
dataset = H5Dopen(file, DATASETNAME);
|
||||
dataset = H5Dopen(file, DATASETNAME);
|
||||
|
||||
/*
|
||||
* Create a data type for s2
|
||||
*/
|
||||
s2_tid = H5Tcreate(H5T_COMPOUND, sizeof(s2_t));
|
||||
/*
|
||||
* Create a data type for s2
|
||||
*/
|
||||
s2_tid = H5Tcreate(H5T_COMPOUND, sizeof(s2_t));
|
||||
|
||||
H5Tinsert(s2_tid, "c_name", HOFFSET(s2_t, c), H5T_NATIVE_DOUBLE);
|
||||
H5Tinsert(s2_tid, "a_name", HOFFSET(s2_t, a), H5T_NATIVE_INT);
|
||||
H5Tinsert(s2_tid, "c_name", HOFFSET(s2_t, c), H5T_NATIVE_DOUBLE);
|
||||
H5Tinsert(s2_tid, "a_name", HOFFSET(s2_t, a), H5T_NATIVE_INT);
|
||||
|
||||
/*
|
||||
* Read two fields c and a from s1 dataset. Fields in the file
|
||||
* are found by their names "c_name" and "a_name".
|
||||
*/
|
||||
status = H5Dread(dataset, s2_tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, s2);
|
||||
/*
|
||||
* Read two fields c and a from s1 dataset. Fields in the file
|
||||
* are found by their names "c_name" and "a_name".
|
||||
*/
|
||||
status = H5Dread(dataset, s2_tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, s2);
|
||||
|
||||
/*
|
||||
* Display the fields
|
||||
*/
|
||||
printf("\n");
|
||||
printf("Field c : \n");
|
||||
for( i = 0; i < LENGTH; i++) printf("%.4f ", s2[i].c);
|
||||
printf("\n");
|
||||
/*
|
||||
* Display the fields
|
||||
*/
|
||||
printf("\n");
|
||||
printf("Field c : \n");
|
||||
for( i = 0; i < LENGTH; i++) printf("%.4f ", s2[i].c);
|
||||
printf("\n");
|
||||
|
||||
printf("\n");
|
||||
printf("Field a : \n");
|
||||
for( i = 0; i < LENGTH; i++) printf("%d ", s2[i].a);
|
||||
printf("\n");
|
||||
printf("\n");
|
||||
printf("Field a : \n");
|
||||
for( i = 0; i < LENGTH; i++) printf("%d ", s2[i].a);
|
||||
printf("\n");
|
||||
|
||||
/*
|
||||
* Create a data type for s3.
|
||||
*/
|
||||
s3_tid = H5Tcreate(H5T_COMPOUND, sizeof(float));
|
||||
/*
|
||||
* Create a data type for s3.
|
||||
*/
|
||||
s3_tid = H5Tcreate(H5T_COMPOUND, sizeof(float));
|
||||
|
||||
status = H5Tinsert(s3_tid, "b_name", 0, H5T_NATIVE_FLOAT);
|
||||
status = H5Tinsert(s3_tid, "b_name", 0, H5T_NATIVE_FLOAT);
|
||||
|
||||
/*
|
||||
* Read field b from s1 dataset. Field in the file is found by its name.
|
||||
*/
|
||||
status = H5Dread(dataset, s3_tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, s3);
|
||||
/*
|
||||
* Read field b from s1 dataset. Field in the file is found by its name.
|
||||
*/
|
||||
status = H5Dread(dataset, s3_tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, s3);
|
||||
|
||||
/*
|
||||
* Display the field
|
||||
*/
|
||||
printf("\n");
|
||||
printf("Field b : \n");
|
||||
for( i = 0; i < LENGTH; i++) printf("%.4f ", s3[i]);
|
||||
printf("\n");
|
||||
/*
|
||||
* Display the field
|
||||
*/
|
||||
printf("\n");
|
||||
printf("Field b : \n");
|
||||
for( i = 0; i < LENGTH; i++) printf("%.4f ", s3[i]);
|
||||
printf("\n");
|
||||
|
||||
/*
|
||||
* Release resources
|
||||
*/
|
||||
H5Tclose(s2_tid);
|
||||
H5Tclose(s3_tid);
|
||||
H5Dclose(dataset);
|
||||
H5Fclose(file);
|
||||
/*
|
||||
* Release resources
|
||||
*/
|
||||
H5Tclose(s2_tid);
|
||||
H5Tclose(s3_tid);
|
||||
H5Dclose(dataset);
|
||||
H5Fclose(file);
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
@@ -13,155 +13,159 @@
|
||||
#define NX 10
|
||||
#define NY 5
|
||||
|
||||
main ()
|
||||
int
|
||||
main (void)
|
||||
{
|
||||
hid_t file; /* handles */
|
||||
hid_t datatype, dataspace, dataset;
|
||||
hid_t filespace;
|
||||
hid_t cparms;
|
||||
hsize_t dims[2] = { 3, 3}; /* dataset dimensions
|
||||
at the creation time */
|
||||
hsize_t dims1[2] = { 3, 3}; /* data1 dimensions */
|
||||
hsize_t dims2[2] = { 7, 1}; /* data2 dimensions */
|
||||
hsize_t dims3[2] = { 2, 2}; /* data3 dimensions */
|
||||
hid_t file; /* handles */
|
||||
hid_t dataspace, dataset;
|
||||
hid_t filespace;
|
||||
hid_t cparms;
|
||||
hsize_t dims[2] = { 3, 3}; /*
|
||||
* dataset dimensions
|
||||
* at the creation time
|
||||
*/
|
||||
hsize_t dims1[2] = { 3, 3}; /* data1 dimensions */
|
||||
hsize_t dims2[2] = { 7, 1}; /* data2 dimensions */
|
||||
hsize_t dims3[2] = { 2, 2}; /* data3 dimensions */
|
||||
|
||||
hsize_t maxdims[2] = {H5S_UNLIMITED, H5S_UNLIMITED};
|
||||
hsize_t chunk_dims[2] ={2, 5};
|
||||
hsize_t size[2];
|
||||
hssize_t offset[2];
|
||||
hsize_t maxdims[2] = {H5S_UNLIMITED, H5S_UNLIMITED};
|
||||
hsize_t chunk_dims[2] ={2, 5};
|
||||
hsize_t size[2];
|
||||
hssize_t offset[2];
|
||||
|
||||
herr_t status;
|
||||
herr_t status;
|
||||
|
||||
int data1[3][3] = { 1, 1, 1, /* data to write */
|
||||
1, 1, 1,
|
||||
1, 1, 1 };
|
||||
int data1[3][3] = { {1, 1, 1}, /* data to write */
|
||||
{1, 1, 1},
|
||||
{1, 1, 1} };
|
||||
|
||||
int data2[7] = { 2, 2, 2, 2, 2, 2, 2};
|
||||
int data2[7] = { 2, 2, 2, 2, 2, 2, 2};
|
||||
|
||||
int data3[2][2] = { 3, 3,
|
||||
3, 3};
|
||||
int data3[2][2] = { {3, 3},
|
||||
{3, 3} };
|
||||
|
||||
/*
|
||||
* Create the data space with ulimited dimensions.
|
||||
*/
|
||||
dataspace = H5Screate_simple(RANK, dims, maxdims);
|
||||
/*
|
||||
* Create the data space with ulimited dimensions.
|
||||
*/
|
||||
dataspace = H5Screate_simple(RANK, dims, maxdims);
|
||||
|
||||
/*
|
||||
* Create a new file. If file exists its contents will be overwritten.
|
||||
*/
|
||||
file = H5Fcreate(FILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
|
||||
/*
|
||||
* Create a new file. If file exists its contents will be overwritten.
|
||||
*/
|
||||
file = H5Fcreate(FILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
|
||||
|
||||
/*
|
||||
* Modify dataset creation properties, i.e. enable chunking.
|
||||
*/
|
||||
cparms = H5Pcreate (H5P_DATASET_CREATE);
|
||||
status = H5Pset_chunk( cparms, RANK, chunk_dims);
|
||||
/*
|
||||
* Modify dataset creation properties, i.e. enable chunking.
|
||||
*/
|
||||
cparms = H5Pcreate (H5P_DATASET_CREATE);
|
||||
status = H5Pset_chunk( cparms, RANK, chunk_dims);
|
||||
|
||||
/*
|
||||
* Create a new dataset within the file using cparms
|
||||
* creation properties.
|
||||
*/
|
||||
dataset = H5Dcreate(file, DATASETNAME, H5T_NATIVE_INT, dataspace,
|
||||
cparms);
|
||||
/*
|
||||
* Create a new dataset within the file using cparms
|
||||
* creation properties.
|
||||
*/
|
||||
dataset = H5Dcreate(file, DATASETNAME, H5T_NATIVE_INT, dataspace,
|
||||
cparms);
|
||||
|
||||
/*
|
||||
* Extend the dataset. This call assures that dataset is at least 3 x 3.
|
||||
*/
|
||||
size[0] = 3;
|
||||
size[1] = 3;
|
||||
status = H5Dextend (dataset, size);
|
||||
/*
|
||||
* Extend the dataset. This call assures that dataset is at least 3 x 3.
|
||||
*/
|
||||
size[0] = 3;
|
||||
size[1] = 3;
|
||||
status = H5Dextend (dataset, size);
|
||||
|
||||
/*
|
||||
* Select a hyperslab.
|
||||
*/
|
||||
filespace = H5Dget_space (dataset);
|
||||
offset[0] = 0;
|
||||
offset[1] = 0;
|
||||
status = H5Sselect_hyperslab(filespace, H5S_SELECT_SET, offset, NULL,
|
||||
dims1, NULL);
|
||||
/*
|
||||
* Select a hyperslab.
|
||||
*/
|
||||
filespace = H5Dget_space (dataset);
|
||||
offset[0] = 0;
|
||||
offset[1] = 0;
|
||||
status = H5Sselect_hyperslab(filespace, H5S_SELECT_SET, offset, NULL,
|
||||
dims1, NULL);
|
||||
|
||||
/*
|
||||
* Write the data to the hyperslab.
|
||||
*/
|
||||
status = H5Dwrite(dataset, H5T_NATIVE_INT, dataspace, filespace,
|
||||
H5P_DEFAULT, data1);
|
||||
/*
|
||||
* Write the data to the hyperslab.
|
||||
*/
|
||||
status = H5Dwrite(dataset, H5T_NATIVE_INT, dataspace, filespace,
|
||||
H5P_DEFAULT, data1);
|
||||
|
||||
/*
|
||||
* Extend the dataset. Dataset becomes 10 x 3.
|
||||
*/
|
||||
dims[0] = dims1[0] + dims2[0];
|
||||
size[0] = dims[0];
|
||||
size[1] = dims[1];
|
||||
status = H5Dextend (dataset, size);
|
||||
/*
|
||||
* Extend the dataset. Dataset becomes 10 x 3.
|
||||
*/
|
||||
dims[0] = dims1[0] + dims2[0];
|
||||
size[0] = dims[0];
|
||||
size[1] = dims[1];
|
||||
status = H5Dextend (dataset, size);
|
||||
|
||||
/*
|
||||
* Select a hyperslab.
|
||||
*/
|
||||
filespace = H5Dget_space (dataset);
|
||||
offset[0] = 3;
|
||||
offset[1] = 0;
|
||||
status = H5Sselect_hyperslab(filespace, H5S_SELECT_SET, offset, NULL,
|
||||
dims2, NULL);
|
||||
/*
|
||||
* Select a hyperslab.
|
||||
*/
|
||||
filespace = H5Dget_space (dataset);
|
||||
offset[0] = 3;
|
||||
offset[1] = 0;
|
||||
status = H5Sselect_hyperslab(filespace, H5S_SELECT_SET, offset, NULL,
|
||||
dims2, NULL);
|
||||
|
||||
/*
|
||||
* Define memory space
|
||||
*/
|
||||
dataspace = H5Screate_simple(RANK, dims2, NULL);
|
||||
/*
|
||||
* Define memory space
|
||||
*/
|
||||
dataspace = H5Screate_simple(RANK, dims2, NULL);
|
||||
|
||||
/*
|
||||
* Write the data to the hyperslab.
|
||||
*/
|
||||
status = H5Dwrite(dataset, H5T_NATIVE_INT, dataspace, filespace,
|
||||
H5P_DEFAULT, data2);
|
||||
/*
|
||||
* Write the data to the hyperslab.
|
||||
*/
|
||||
status = H5Dwrite(dataset, H5T_NATIVE_INT, dataspace, filespace,
|
||||
H5P_DEFAULT, data2);
|
||||
|
||||
/*
|
||||
* Extend the dataset. Dataset becomes 10 x 5.
|
||||
*/
|
||||
dims[1] = dims1[1] + dims3[1];
|
||||
size[0] = dims[0];
|
||||
size[1] = dims[1];
|
||||
status = H5Dextend (dataset, size);
|
||||
/*
|
||||
* Extend the dataset. Dataset becomes 10 x 5.
|
||||
*/
|
||||
dims[1] = dims1[1] + dims3[1];
|
||||
size[0] = dims[0];
|
||||
size[1] = dims[1];
|
||||
status = H5Dextend (dataset, size);
|
||||
|
||||
/*
|
||||
* Select a hyperslab
|
||||
*/
|
||||
filespace = H5Dget_space (dataset);
|
||||
offset[0] = 0;
|
||||
offset[1] = 3;
|
||||
status = H5Sselect_hyperslab(filespace, H5S_SELECT_SET, offset, NULL,
|
||||
dims3, NULL);
|
||||
/*
|
||||
* Select a hyperslab
|
||||
*/
|
||||
filespace = H5Dget_space (dataset);
|
||||
offset[0] = 0;
|
||||
offset[1] = 3;
|
||||
status = H5Sselect_hyperslab(filespace, H5S_SELECT_SET, offset, NULL,
|
||||
dims3, NULL);
|
||||
|
||||
/*
|
||||
* Define memory space.
|
||||
*/
|
||||
dataspace = H5Screate_simple(RANK, dims3, NULL);
|
||||
/*
|
||||
* Define memory space.
|
||||
*/
|
||||
dataspace = H5Screate_simple(RANK, dims3, NULL);
|
||||
|
||||
/*
|
||||
* Write the data to the hyperslab.
|
||||
*/
|
||||
status = H5Dwrite(dataset, H5T_NATIVE_INT, dataspace, filespace,
|
||||
H5P_DEFAULT, data3);
|
||||
/*
|
||||
* Write the data to the hyperslab.
|
||||
*/
|
||||
status = H5Dwrite(dataset, H5T_NATIVE_INT, dataspace, filespace,
|
||||
H5P_DEFAULT, data3);
|
||||
|
||||
/*
|
||||
* Resulting dataset
|
||||
*
|
||||
3 3 3 2 2
|
||||
3 3 3 2 2
|
||||
3 3 3 0 0
|
||||
2 0 0 0 0
|
||||
2 0 0 0 0
|
||||
2 0 0 0 0
|
||||
2 0 0 0 0
|
||||
2 0 0 0 0
|
||||
2 0 0 0 0
|
||||
2 0 0 0 0
|
||||
*/
|
||||
/*
|
||||
* Close/release resources.
|
||||
*/
|
||||
H5Dclose(dataset);
|
||||
H5Sclose(dataspace);
|
||||
H5Sclose(filespace);
|
||||
H5Fclose(file);
|
||||
/*
|
||||
* Resulting dataset
|
||||
*
|
||||
* 3 3 3 2 2
|
||||
* 3 3 3 2 2
|
||||
* 3 3 3 0 0
|
||||
* 2 0 0 0 0
|
||||
* 2 0 0 0 0
|
||||
* 2 0 0 0 0
|
||||
* 2 0 0 0 0
|
||||
* 2 0 0 0 0
|
||||
* 2 0 0 0 0
|
||||
* 2 0 0 0 0
|
||||
*/
|
||||
/*
|
||||
* Close/release resources.
|
||||
*/
|
||||
H5Dclose(dataset);
|
||||
H5Sclose(dataspace);
|
||||
H5Sclose(filespace);
|
||||
H5Fclose(file);
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
@@ -10,108 +10,109 @@
|
||||
#define FILE "DIR.h5"
|
||||
#define RANK 2
|
||||
|
||||
main()
|
||||
int
|
||||
main(void)
|
||||
{
|
||||
|
||||
hid_t file, dir;
|
||||
hid_t dataset, dataspace;
|
||||
hid_t file, dir;
|
||||
hid_t dataset, dataspace;
|
||||
|
||||
herr_t status;
|
||||
hsize_t dims[2];
|
||||
hsize_t size[1];
|
||||
herr_t status;
|
||||
hsize_t dims[2];
|
||||
hsize_t size[1];
|
||||
|
||||
/*
|
||||
* Create a file.
|
||||
*/
|
||||
file = H5Fcreate(FILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
|
||||
/*
|
||||
* Create a file.
|
||||
*/
|
||||
file = H5Fcreate(FILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
|
||||
|
||||
/*
|
||||
* Create two groups in a file.
|
||||
*/
|
||||
dir = H5Gcreate(file, "/IntData", 0);
|
||||
status = H5Gclose(dir);
|
||||
/*
|
||||
* Create two groups in a file.
|
||||
*/
|
||||
dir = H5Gcreate(file, "/IntData", 0);
|
||||
status = H5Gclose(dir);
|
||||
|
||||
dir = H5Gcreate(file,"/FloatData", 0);
|
||||
status = H5Gclose(dir);
|
||||
dir = H5Gcreate(file,"/FloatData", 0);
|
||||
status = H5Gclose(dir);
|
||||
|
||||
/*
|
||||
* Create dataspace for the character string
|
||||
*/
|
||||
size[0] = 80;
|
||||
dataspace = H5Screate_simple(1, size, NULL);
|
||||
/*
|
||||
* Create dataspace for the character string
|
||||
*/
|
||||
size[0] = 80;
|
||||
dataspace = H5Screate_simple(1, size, NULL);
|
||||
|
||||
/*
|
||||
* Create dataset "String" in the root group.
|
||||
*/
|
||||
dataset = H5Dcreate(file, "String", H5T_NATIVE_CHAR, dataspace, H5P_DEFAULT);
|
||||
H5Dclose(dataset);
|
||||
/*
|
||||
* Create dataset "String" in the root group.
|
||||
*/
|
||||
dataset = H5Dcreate(file, "String", H5T_NATIVE_CHAR, dataspace,
|
||||
H5P_DEFAULT);
|
||||
H5Dclose(dataset);
|
||||
|
||||
/*
|
||||
* Create dataset "String" in the /IntData group.
|
||||
*/
|
||||
dataset = H5Dcreate(file, "/IntData/String", H5T_NATIVE_CHAR, dataspace,
|
||||
H5P_DEFAULT);
|
||||
H5Dclose(dataset);
|
||||
/*
|
||||
* Create dataset "String" in the /IntData group.
|
||||
*/
|
||||
dataset = H5Dcreate(file, "/IntData/String", H5T_NATIVE_CHAR, dataspace,
|
||||
H5P_DEFAULT);
|
||||
H5Dclose(dataset);
|
||||
|
||||
/*
|
||||
* Create dataset "String" in the /FloatData group.
|
||||
*/
|
||||
dataset = H5Dcreate(file, "/FloatData/String", H5T_NATIVE_CHAR, dataspace,
|
||||
H5P_DEFAULT);
|
||||
H5Sclose(dataspace);
|
||||
H5Dclose(dataset);
|
||||
/*
|
||||
* Create dataset "String" in the /FloatData group.
|
||||
*/
|
||||
dataset = H5Dcreate(file, "/FloatData/String", H5T_NATIVE_CHAR, dataspace,
|
||||
H5P_DEFAULT);
|
||||
H5Sclose(dataspace);
|
||||
H5Dclose(dataset);
|
||||
|
||||
/*
|
||||
* Create IntArray dataset in the /IntData group by specifying full path.
|
||||
*/
|
||||
dims[0] = 2;
|
||||
dims[1] = 3;
|
||||
dataspace = H5Screate_simple(RANK, dims, NULL);
|
||||
dataset = H5Dcreate(file, "/IntData/IntArray", H5T_NATIVE_INT, dataspace,
|
||||
H5P_DEFAULT);
|
||||
H5Sclose(dataspace);
|
||||
H5Dclose(dataset);
|
||||
/*
|
||||
* Create IntArray dataset in the /IntData group by specifying full path.
|
||||
*/
|
||||
dims[0] = 2;
|
||||
dims[1] = 3;
|
||||
dataspace = H5Screate_simple(RANK, dims, NULL);
|
||||
dataset = H5Dcreate(file, "/IntData/IntArray", H5T_NATIVE_INT, dataspace,
|
||||
H5P_DEFAULT);
|
||||
H5Sclose(dataspace);
|
||||
H5Dclose(dataset);
|
||||
|
||||
/*
|
||||
* Set current group to /IntData and attach to the dataset String.
|
||||
*/
|
||||
/*
|
||||
* Set current group to /IntData and attach to the dataset String.
|
||||
*/
|
||||
status = H5Gset (file, "/IntData");
|
||||
dataset = H5Dopen(file, "String");
|
||||
if (dataset > 0) printf("String dataset in /IntData group is found\n");
|
||||
H5Dclose(dataset);
|
||||
|
||||
status = H5Gset (file, "/IntData");
|
||||
dataset = H5Dopen(file, "String");
|
||||
if (dataset > 0) printf("String dataset in /IntData group is found\n");
|
||||
H5Dclose(dataset);
|
||||
/*
|
||||
* Set current group to /FloatData.
|
||||
*/
|
||||
status = H5Gset (file, "/FloatData");
|
||||
|
||||
/*
|
||||
* Set current group to /FloatData.
|
||||
*/
|
||||
status = H5Gset (file, "/FloatData");
|
||||
/*
|
||||
* Create two datasets FlatArray and DoubleArray.
|
||||
*/
|
||||
dims[0] = 5;
|
||||
dims[1] = 10;
|
||||
dataspace = H5Screate_simple(RANK, dims, NULL);
|
||||
dataset = H5Dcreate(file, "FloatArray", H5T_NATIVE_FLOAT, dataspace,
|
||||
H5P_DEFAULT);
|
||||
H5Sclose(dataspace);
|
||||
H5Dclose(dataset);
|
||||
|
||||
/*
|
||||
* Create two datasets FlatArray and DoubleArray.
|
||||
*/
|
||||
dims[0] = 4;
|
||||
dims[1] = 6;
|
||||
dataspace = H5Screate_simple(RANK, dims, NULL);
|
||||
dataset = H5Dcreate(file, "DoubleArray", H5T_NATIVE_DOUBLE, dataspace,
|
||||
H5P_DEFAULT);
|
||||
H5Sclose(dataspace);
|
||||
H5Dclose(dataset);
|
||||
|
||||
dims[0] = 5;
|
||||
dims[1] = 10;
|
||||
dataspace = H5Screate_simple(RANK, dims, NULL);
|
||||
dataset = H5Dcreate(file, "FloatArray", H5T_NATIVE_FLOAT, dataspace, H5P_DEFAULT);
|
||||
H5Sclose(dataspace);
|
||||
H5Dclose(dataset);
|
||||
|
||||
dims[0] = 4;
|
||||
dims[1] = 6;
|
||||
dataspace = H5Screate_simple(RANK, dims, NULL);
|
||||
dataset = H5Dcreate(file, "DoubleArray", H5T_NATIVE_DOUBLE, dataspace,
|
||||
H5P_DEFAULT);
|
||||
H5Sclose(dataspace);
|
||||
H5Dclose(dataset);
|
||||
|
||||
/*
|
||||
* Attach to /FloatData/String dataset.
|
||||
*/
|
||||
|
||||
dataset = H5Dopen(file, "/FloatData/String");
|
||||
if (dataset > 0) printf("/FloatData/String dataset is found\n");
|
||||
H5Dclose(dataset);
|
||||
H5Fclose(file);
|
||||
/*
|
||||
* Attach to /FloatData/String dataset.
|
||||
*/
|
||||
dataset = H5Dopen(file, "/FloatData/String");
|
||||
if (dataset > 0) printf("/FloatData/String dataset is found\n");
|
||||
H5Dclose(dataset);
|
||||
H5Fclose(file);
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
@@ -17,114 +17,120 @@
|
||||
#define RANK 2
|
||||
#define RANK_OUT 3
|
||||
|
||||
main ()
|
||||
int
|
||||
main (void)
|
||||
{
|
||||
hid_t file, dataset; /* handles */
|
||||
hid_t datatype, dataspace;
|
||||
hid_t memspace;
|
||||
H5T_class_t class; /* data type class */
|
||||
H5T_order_t order; /* data order */
|
||||
size_t size; /* size of the data element
|
||||
stored in file */
|
||||
hsize_t dimsm[3]; /* memory space dimensions */
|
||||
hsize_t dims_out[2]; /* dataset dimensions */
|
||||
herr_t status;
|
||||
hid_t file, dataset; /* handles */
|
||||
hid_t datatype, dataspace;
|
||||
hid_t memspace;
|
||||
H5T_class_t class; /* data type class */
|
||||
H5T_order_t order; /* data order */
|
||||
size_t size; /*
|
||||
* size of the data element
|
||||
* stored in file
|
||||
*/
|
||||
hsize_t dimsm[3]; /* memory space dimensions */
|
||||
hsize_t dims_out[2]; /* dataset dimensions */
|
||||
herr_t status;
|
||||
|
||||
int data_out[NX][NY][NZ ]; /* output buffer */
|
||||
int data_out[NX][NY][NZ ]; /* output buffer */
|
||||
|
||||
hsize_t count[2]; /* size of the hyperslab in the file */
|
||||
hsize_t offset[2]; /* hyperslab offset in the file */
|
||||
hsize_t count_out[3]; /* size of the hyperslab in memory */
|
||||
hsize_t offset_out[3]; /* hyperslab offset in memory */
|
||||
int i, j, k, status_n, rank;
|
||||
hsize_t count[2]; /* size of the hyperslab in the file */
|
||||
hsize_t offset[2]; /* hyperslab offset in the file */
|
||||
hsize_t count_out[3]; /* size of the hyperslab in memory */
|
||||
hsize_t offset_out[3]; /* hyperslab offset in memory */
|
||||
int i, j, k, status_n, rank;
|
||||
|
||||
for (j = 0; j < NX; j++) {
|
||||
for (i = 0; i < NY; i++) {
|
||||
for (k = 0; k < NZ ; k++)
|
||||
data_out[j][i][k] = 0;
|
||||
}
|
||||
}
|
||||
for (j = 0; j < NX; j++) {
|
||||
for (i = 0; i < NY; i++) {
|
||||
for (k = 0; k < NZ ; k++)
|
||||
data_out[j][i][k] = 0;
|
||||
}
|
||||
}
|
||||
|
||||
/*
|
||||
* Open the file and the dataset.
|
||||
*/
|
||||
file = H5Fopen(FILE, H5F_ACC_RDONLY, H5P_DEFAULT);
|
||||
dataset = H5Dopen(file, DATASETNAME);
|
||||
/*
|
||||
* Open the file and the dataset.
|
||||
*/
|
||||
file = H5Fopen(FILE, H5F_ACC_RDONLY, H5P_DEFAULT);
|
||||
dataset = H5Dopen(file, DATASETNAME);
|
||||
|
||||
/*
|
||||
* Get datatype and dataspace handles and then query
|
||||
* dataset class, order, size, rank and dimensions.
|
||||
*/
|
||||
/*
|
||||
* Get datatype and dataspace handles and then query
|
||||
* dataset class, order, size, rank and dimensions.
|
||||
*/
|
||||
datatype = H5Dget_type(dataset); /* datatype handle */
|
||||
class = H5Tget_class(datatype);
|
||||
if (class == H5T_INTEGER) printf("Data set has INTEGER type \n");
|
||||
order = H5Tget_order(datatype);
|
||||
if (order == H5T_ORDER_LE) printf("Little endian order \n");
|
||||
|
||||
datatype = H5Dget_type(dataset); /* datatype handle */
|
||||
class = H5Tget_class(datatype);
|
||||
if (class == H5T_INTEGER) printf("Data set has INTEGER type \n");
|
||||
order = H5Tget_order(datatype);
|
||||
if (order == H5T_ORDER_LE) printf("Little endian order \n");
|
||||
size = H5Tget_size(datatype);
|
||||
printf(" Data size is %d \n", size);
|
||||
|
||||
size = H5Tget_size(datatype);
|
||||
printf(" Data size is %d \n", size);
|
||||
dataspace = H5Dget_space(dataset); /* dataspace handle */
|
||||
rank = H5Sextent_ndims(dataspace);
|
||||
status_n = H5Sextent_dims(dataspace, dims_out, NULL);
|
||||
printf("rank %d, dimensions %lu x %lu \n", rank,
|
||||
(unsigned long)(dims_out[0]), (unsigned long)(dims_out[1]));
|
||||
|
||||
dataspace = H5Dget_space(dataset); /* dataspace handle */
|
||||
rank = H5Sextent_ndims(dataspace);
|
||||
status_n = H5Sextent_dims(dataspace, dims_out, NULL);
|
||||
printf("rank %d, dimensions %d x %d \n", rank, dims_out[0], dims_out[1]);
|
||||
/*
|
||||
* Define hyperslab in the datatset.
|
||||
*/
|
||||
offset[0] = 1;
|
||||
offset[1] = 2;
|
||||
count[0] = NX_SUB;
|
||||
count[1] = NY_SUB;
|
||||
status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, offset, NULL,
|
||||
count, NULL);
|
||||
|
||||
/*
|
||||
* Define hyperslab in the datatset.
|
||||
*/
|
||||
offset[0] = 1;
|
||||
offset[1] = 2;
|
||||
count[0] = NX_SUB;
|
||||
count[1] = NY_SUB;
|
||||
status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, offset, NULL,
|
||||
count, NULL);
|
||||
/*
|
||||
* Define the memory dataspace.
|
||||
*/
|
||||
dimsm[0] = NX;
|
||||
dimsm[1] = NY;
|
||||
dimsm[2] = NZ ;
|
||||
memspace = H5Screate_simple(RANK_OUT,dimsm,NULL);
|
||||
|
||||
/*
|
||||
* Define the memory dataspace.
|
||||
*/
|
||||
dimsm[0] = NX;
|
||||
dimsm[1] = NY;
|
||||
dimsm[2] = NZ ;
|
||||
memspace = H5Screate_simple(RANK_OUT,dimsm,NULL);
|
||||
/*
|
||||
* Define memory hyperslab.
|
||||
*/
|
||||
offset_out[0] = 3;
|
||||
offset_out[1] = 0;
|
||||
offset_out[2] = 0;
|
||||
count_out[0] = NX_SUB;
|
||||
count_out[1] = NY_SUB;
|
||||
count_out[2] = 1;
|
||||
status = H5Sselect_hyperslab(memspace, H5S_SELECT_SET, offset_out, NULL,
|
||||
count_out, NULL);
|
||||
|
||||
/*
|
||||
* Define memory hyperslab.
|
||||
*/
|
||||
offset_out[0] = 3;
|
||||
offset_out[1] = 0;
|
||||
offset_out[2] = 0;
|
||||
count_out[0] = NX_SUB;
|
||||
count_out[1] = NY_SUB;
|
||||
count_out[2] = 1;
|
||||
status = H5Sselect_hyperslab(memspace, H5S_SELECT_SET, offset_out, NULL,
|
||||
count_out, NULL);
|
||||
/*
|
||||
* Read data from hyperslab in the file into the hyperslab in
|
||||
* memory and display.
|
||||
*/
|
||||
status = H5Dread(dataset, H5T_NATIVE_INT, memspace, dataspace,
|
||||
H5P_DEFAULT, data_out);
|
||||
for (j = 0; j < NX; j++) {
|
||||
for (i = 0; i < NY; i++) printf("%d ", data_out[j][i][0]);
|
||||
printf("\n");
|
||||
}
|
||||
/*
|
||||
* 0 0 0 0 0 0 0
|
||||
* 0 0 0 0 0 0 0
|
||||
* 0 0 0 0 0 0 0
|
||||
* 3 4 5 6 0 0 0
|
||||
* 4 5 6 7 0 0 0
|
||||
* 5 6 7 8 0 0 0
|
||||
* 0 0 0 0 0 0 0
|
||||
*/
|
||||
|
||||
/*
|
||||
* Read data from hyperslab in the file into the hyperslab in
|
||||
* memory and display.
|
||||
*/
|
||||
status = H5Dread(dataset, H5T_NATIVE_INT, memspace, dataspace,
|
||||
H5P_DEFAULT, data_out);
|
||||
for (j = 0; j < NX; j++) {
|
||||
for (i = 0; i < NY; i++) printf("%d ", data_out[j][i][0]);
|
||||
printf("\n");
|
||||
}
|
||||
/* 0 0 0 0 0 0 0
|
||||
0 0 0 0 0 0 0
|
||||
0 0 0 0 0 0 0
|
||||
3 4 5 6 0 0 0
|
||||
4 5 6 7 0 0 0
|
||||
5 6 7 8 0 0 0
|
||||
0 0 0 0 0 0 0 */
|
||||
|
||||
/*
|
||||
* Close/release resources.
|
||||
*/
|
||||
H5Tclose(datatype);
|
||||
H5Dclose(dataset);
|
||||
H5Sclose(dataspace);
|
||||
H5Sclose(memspace);
|
||||
H5Fclose(file);
|
||||
/*
|
||||
* Close/release resources.
|
||||
*/
|
||||
H5Tclose(datatype);
|
||||
H5Dclose(dataset);
|
||||
H5Sclose(dataspace);
|
||||
H5Sclose(memspace);
|
||||
H5Fclose(file);
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
@@ -11,69 +11,73 @@
|
||||
#define NY 6
|
||||
#define RANK 2
|
||||
|
||||
main ()
|
||||
int
|
||||
main (void)
|
||||
{
|
||||
hid_t file, dataset; /* file and dataset handles */
|
||||
hid_t datatype, dataspace; /* handles */
|
||||
hsize_t dimsf[2]; /* dataset dimensions */
|
||||
herr_t status;
|
||||
int data[NX][NY]; /* data to write */
|
||||
int i, j;
|
||||
hid_t file, dataset; /* file and dataset handles */
|
||||
hid_t datatype, dataspace; /* handles */
|
||||
hsize_t dimsf[2]; /* dataset dimensions */
|
||||
herr_t status;
|
||||
int data[NX][NY]; /* data to write */
|
||||
int i, j;
|
||||
|
||||
/*
|
||||
* Data and output buffer initialization.
|
||||
*/
|
||||
/*
|
||||
* Data and output buffer initialization.
|
||||
*/
|
||||
for (j = 0; j < NX; j++) {
|
||||
for (i = 0; i < NY; i++)
|
||||
data[j][i] = i + j;
|
||||
}
|
||||
/*
|
||||
* 0 1 2 3 4 5
|
||||
* 1 2 3 4 5 6
|
||||
* 2 3 4 5 6 7
|
||||
* 3 4 5 6 7 8
|
||||
* 4 5 6 7 8 9
|
||||
*/
|
||||
|
||||
for (j = 0; j < NX; j++) {
|
||||
for (i = 0; i < NY; i++)
|
||||
data[j][i] = i + j;
|
||||
}
|
||||
/* 0 1 2 3 4 5
|
||||
1 2 3 4 5 6
|
||||
2 3 4 5 6 7
|
||||
3 4 5 6 7 8
|
||||
4 5 6 7 8 9 */
|
||||
/*
|
||||
* Create a new file using H5F_ACC_TRUNC access,
|
||||
* default file creation properties, and default file
|
||||
* access properties.
|
||||
*/
|
||||
file = H5Fcreate(FILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
|
||||
|
||||
/*
|
||||
* Create a new file using H5F_ACC_TRUNC access,
|
||||
* default file creation properties, and default file
|
||||
* access properties.
|
||||
*/
|
||||
file = H5Fcreate(FILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
|
||||
/*
|
||||
* Describe the size of the array and create the data space for fixed
|
||||
* size dataset.
|
||||
*/
|
||||
dimsf[0] = NX;
|
||||
dimsf[1] = NY;
|
||||
dataspace = H5Screate_simple(RANK, dimsf, NULL);
|
||||
|
||||
/*
|
||||
* Describe the size of the array and create the data space for fixed
|
||||
* size dataset.
|
||||
*/
|
||||
dimsf[0] = NX;
|
||||
dimsf[1] = NY;
|
||||
dataspace = H5Screate_simple(RANK, dimsf, NULL);
|
||||
/*
|
||||
* Define datatype for the data in the file.
|
||||
* We will store little endian INT numbers.
|
||||
*/
|
||||
datatype = H5Tcopy(H5T_NATIVE_INT);
|
||||
status = H5Tset_order(datatype, H5T_ORDER_LE);
|
||||
|
||||
/*
|
||||
* Define datatype for the data in the file.
|
||||
* We will store little endian INT numbers.
|
||||
*/
|
||||
datatype = H5Tcopy(H5T_NATIVE_INT);
|
||||
status = H5Tset_order(datatype, H5T_ORDER_LE);
|
||||
/*
|
||||
* Create a new dataset within the file using defined dataspace and
|
||||
* datatype and default dataset creation properties.
|
||||
*/
|
||||
dataset = H5Dcreate(file, DATASETNAME, datatype, dataspace,
|
||||
H5P_DEFAULT);
|
||||
/*
|
||||
* Create a new dataset within the file using defined dataspace and
|
||||
* datatype and default dataset creation properties.
|
||||
*/
|
||||
dataset = H5Dcreate(file, DATASETNAME, datatype, dataspace,
|
||||
H5P_DEFAULT);
|
||||
|
||||
/*
|
||||
* Write the data to the dataset using default transfer properties.
|
||||
*/
|
||||
status = H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL,
|
||||
H5P_DEFAULT, data);
|
||||
/*
|
||||
* Write the data to the dataset using default transfer properties.
|
||||
*/
|
||||
status = H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL,
|
||||
H5P_DEFAULT, data);
|
||||
|
||||
/*
|
||||
* Close/release resources.
|
||||
*/
|
||||
H5Sclose(dataspace);
|
||||
H5Tclose(datatype);
|
||||
H5Dclose(dataset);
|
||||
H5Fclose(file);
|
||||
/*
|
||||
* Close/release resources.
|
||||
*/
|
||||
H5Sclose(dataspace);
|
||||
H5Tclose(datatype);
|
||||
H5Dclose(dataset);
|
||||
H5Fclose(file);
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
380
src/.distdep
380
src/.distdep
@@ -91,39 +91,6 @@ H5Gent.o: \
|
||||
H5Gpublic.h \
|
||||
H5Bprivate.h \
|
||||
H5Bpublic.h
|
||||
H5Gnode.o: \
|
||||
H5Gnode.c \
|
||||
H5private.h \
|
||||
H5public.h \
|
||||
H5config.h \
|
||||
H5ACprivate.h \
|
||||
H5ACpublic.h \
|
||||
H5Fprivate.h \
|
||||
H5Fpublic.h \
|
||||
H5Ipublic.h \
|
||||
H5Dpublic.h \
|
||||
H5Bprivate.h \
|
||||
H5Bpublic.h \
|
||||
H5Eprivate.h \
|
||||
H5Epublic.h \
|
||||
H5Gpkg.h \
|
||||
H5Gprivate.h \
|
||||
H5Gpublic.h \
|
||||
H5HLprivate.h \
|
||||
H5HLpublic.h \
|
||||
H5MFprivate.h \
|
||||
H5MFpublic.h \
|
||||
H5MMprivate.h \
|
||||
H5MMpublic.h \
|
||||
H5Oprivate.h \
|
||||
H5Opublic.h \
|
||||
H5HGprivate.h \
|
||||
H5HGpublic.h \
|
||||
H5Tprivate.h \
|
||||
H5Tpublic.h \
|
||||
H5Sprivate.h \
|
||||
H5Spublic.h \
|
||||
H5Zprivate.h
|
||||
H5Gstab.o: \
|
||||
H5Gstab.c \
|
||||
H5private.h \
|
||||
@@ -540,24 +507,6 @@ H5AC.o: \
|
||||
H5Dpublic.h \
|
||||
H5Eprivate.h \
|
||||
H5Epublic.h
|
||||
H5B.o: \
|
||||
H5B.c \
|
||||
H5private.h \
|
||||
H5public.h \
|
||||
H5config.h \
|
||||
H5ACprivate.h \
|
||||
H5ACpublic.h \
|
||||
H5Fprivate.h \
|
||||
H5Fpublic.h \
|
||||
H5Ipublic.h \
|
||||
H5Dpublic.h \
|
||||
H5Bprivate.h \
|
||||
H5Bpublic.h \
|
||||
H5Eprivate.h \
|
||||
H5Epublic.h \
|
||||
H5MFprivate.h \
|
||||
H5MFpublic.h \
|
||||
H5MMprivate.h
|
||||
H5Ffamily.o: \
|
||||
H5Ffamily.c \
|
||||
H5private.h \
|
||||
@@ -566,24 +515,6 @@ H5Ffamily.o: \
|
||||
H5Eprivate.h \
|
||||
H5Epublic.h \
|
||||
H5Ipublic.h
|
||||
H5HL.o: \
|
||||
H5HL.c \
|
||||
H5private.h \
|
||||
H5public.h \
|
||||
H5config.h \
|
||||
H5ACprivate.h \
|
||||
H5ACpublic.h \
|
||||
H5Fprivate.h \
|
||||
H5Fpublic.h \
|
||||
H5Ipublic.h \
|
||||
H5Dpublic.h \
|
||||
H5Eprivate.h \
|
||||
H5Epublic.h \
|
||||
H5HLprivate.h \
|
||||
H5HLpublic.h \
|
||||
H5MFprivate.h \
|
||||
H5MFpublic.h \
|
||||
H5MMprivate.h
|
||||
H5Omtime.o: \
|
||||
H5Omtime.c \
|
||||
H5private.h \
|
||||
@@ -643,19 +574,6 @@ H5E.o: \
|
||||
H5Iprivate.h \
|
||||
H5Ipublic.h \
|
||||
H5Eprivate.h
|
||||
H5Flow.o: \
|
||||
H5Flow.c \
|
||||
H5private.h \
|
||||
H5public.h \
|
||||
H5config.h \
|
||||
H5Eprivate.h \
|
||||
H5Epublic.h \
|
||||
H5Ipublic.h \
|
||||
H5Fprivate.h \
|
||||
H5Fpublic.h \
|
||||
H5Dpublic.h \
|
||||
H5MMprivate.h \
|
||||
H5MMpublic.h
|
||||
H5MF.o: \
|
||||
H5MF.c \
|
||||
H5private.h \
|
||||
@@ -804,62 +722,6 @@ H5TB.o: \
|
||||
H5Iprivate.h \
|
||||
H5Ipublic.h \
|
||||
H5Eprivate.h
|
||||
H5Fmpio.o: \
|
||||
H5Fmpio.c \
|
||||
H5private.h \
|
||||
H5public.h \
|
||||
H5config.h \
|
||||
H5Eprivate.h \
|
||||
H5Epublic.h \
|
||||
H5Ipublic.h \
|
||||
H5Dprivate.h \
|
||||
H5Dpublic.h \
|
||||
H5Fprivate.h \
|
||||
H5Fpublic.h \
|
||||
H5Gprivate.h \
|
||||
H5Gpublic.h \
|
||||
H5Bprivate.h \
|
||||
H5Bpublic.h \
|
||||
H5Oprivate.h \
|
||||
H5Opublic.h \
|
||||
H5HGprivate.h \
|
||||
H5HGpublic.h \
|
||||
H5Tprivate.h \
|
||||
H5Tpublic.h \
|
||||
H5Sprivate.h \
|
||||
H5Spublic.h \
|
||||
H5Zprivate.h \
|
||||
H5Zpublic.h \
|
||||
H5MMprivate.h \
|
||||
H5MMpublic.h
|
||||
H5O.o: \
|
||||
H5O.c \
|
||||
H5private.h \
|
||||
H5public.h \
|
||||
H5config.h \
|
||||
H5ACprivate.h \
|
||||
H5ACpublic.h \
|
||||
H5Fprivate.h \
|
||||
H5Fpublic.h \
|
||||
H5Ipublic.h \
|
||||
H5Dpublic.h \
|
||||
H5Eprivate.h \
|
||||
H5Epublic.h \
|
||||
H5MFprivate.h \
|
||||
H5MFpublic.h \
|
||||
H5MMprivate.h \
|
||||
H5MMpublic.h \
|
||||
H5Oprivate.h \
|
||||
H5Opublic.h \
|
||||
H5Gprivate.h \
|
||||
H5Gpublic.h \
|
||||
H5Bprivate.h \
|
||||
H5Bpublic.h \
|
||||
H5HGprivate.h \
|
||||
H5HGpublic.h \
|
||||
H5Tprivate.h \
|
||||
H5Tpublic.h \
|
||||
H5Sprivate.h
|
||||
H5Smpio.o: \
|
||||
H5Smpio.c \
|
||||
H5private.h \
|
||||
@@ -934,6 +796,67 @@ H5Sselect.o: \
|
||||
H5Tpublic.h \
|
||||
H5Zprivate.h \
|
||||
H5Zpublic.h
|
||||
H5G.o: \
|
||||
H5G.c \
|
||||
H5private.h \
|
||||
H5public.h \
|
||||
H5config.h \
|
||||
H5Aprivate.h \
|
||||
H5Apublic.h \
|
||||
H5Ipublic.h \
|
||||
H5Gprivate.h \
|
||||
H5Gpublic.h \
|
||||
H5Bprivate.h \
|
||||
H5Bpublic.h \
|
||||
H5Fprivate.h \
|
||||
H5Fpublic.h \
|
||||
H5Dpublic.h \
|
||||
H5Dprivate.h \
|
||||
H5Oprivate.h \
|
||||
H5Opublic.h \
|
||||
H5HGprivate.h \
|
||||
H5HGpublic.h \
|
||||
H5Tprivate.h \
|
||||
H5Tpublic.h \
|
||||
H5Sprivate.h \
|
||||
H5Spublic.h \
|
||||
H5Zprivate.h \
|
||||
H5Zpublic.h \
|
||||
H5Eprivate.h \
|
||||
H5Epublic.h \
|
||||
H5Gpkg.h \
|
||||
H5ACprivate.h \
|
||||
H5ACpublic.h \
|
||||
H5HLprivate.h \
|
||||
H5HLpublic.h
|
||||
H5R.o: \
|
||||
H5R.c \
|
||||
H5Rprivate.h \
|
||||
H5Rpublic.h \
|
||||
H5Ipublic.h \
|
||||
H5public.h \
|
||||
H5config.h \
|
||||
H5Dprivate.h \
|
||||
H5Dpublic.h \
|
||||
H5private.h \
|
||||
H5Fprivate.h \
|
||||
H5Fpublic.h \
|
||||
H5Gprivate.h \
|
||||
H5Gpublic.h \
|
||||
H5Bprivate.h \
|
||||
H5Bpublic.h \
|
||||
H5Oprivate.h \
|
||||
H5Opublic.h \
|
||||
H5HGprivate.h \
|
||||
H5HGpublic.h \
|
||||
H5Tprivate.h \
|
||||
H5Tpublic.h \
|
||||
H5Sprivate.h \
|
||||
H5Spublic.h \
|
||||
H5Zprivate.h \
|
||||
H5Zpublic.h \
|
||||
H5Eprivate.h \
|
||||
H5Epublic.h
|
||||
H5A.o: \
|
||||
H5A.c \
|
||||
H5private.h \
|
||||
@@ -967,6 +890,24 @@ H5A.o: \
|
||||
H5Ppublic.h \
|
||||
H5Apkg.h \
|
||||
H5Aprivate.h
|
||||
H5B.o: \
|
||||
H5B.c \
|
||||
H5private.h \
|
||||
H5public.h \
|
||||
H5config.h \
|
||||
H5ACprivate.h \
|
||||
H5ACpublic.h \
|
||||
H5Fprivate.h \
|
||||
H5Fpublic.h \
|
||||
H5Ipublic.h \
|
||||
H5Dpublic.h \
|
||||
H5Bprivate.h \
|
||||
H5Bpublic.h \
|
||||
H5Eprivate.h \
|
||||
H5Epublic.h \
|
||||
H5MFprivate.h \
|
||||
H5MFpublic.h \
|
||||
H5MMprivate.h
|
||||
H5D.o: \
|
||||
H5D.c \
|
||||
H5private.h \
|
||||
@@ -1033,22 +974,35 @@ H5F.o: \
|
||||
H5Epublic.h \
|
||||
H5MMprivate.h \
|
||||
H5MMpublic.h
|
||||
H5G.o: \
|
||||
H5G.c \
|
||||
H5Flow.o: \
|
||||
H5Flow.c \
|
||||
H5private.h \
|
||||
H5public.h \
|
||||
H5config.h \
|
||||
H5Aprivate.h \
|
||||
H5Apublic.h \
|
||||
H5Eprivate.h \
|
||||
H5Epublic.h \
|
||||
H5Ipublic.h \
|
||||
H5Fprivate.h \
|
||||
H5Fpublic.h \
|
||||
H5Dpublic.h \
|
||||
H5MMprivate.h \
|
||||
H5MMpublic.h
|
||||
H5Fmpio.o: \
|
||||
H5Fmpio.c \
|
||||
H5private.h \
|
||||
H5public.h \
|
||||
H5config.h \
|
||||
H5Eprivate.h \
|
||||
H5Epublic.h \
|
||||
H5Ipublic.h \
|
||||
H5Dprivate.h \
|
||||
H5Dpublic.h \
|
||||
H5Fprivate.h \
|
||||
H5Fpublic.h \
|
||||
H5Gprivate.h \
|
||||
H5Gpublic.h \
|
||||
H5Bprivate.h \
|
||||
H5Bpublic.h \
|
||||
H5Fprivate.h \
|
||||
H5Fpublic.h \
|
||||
H5Dpublic.h \
|
||||
H5Dprivate.h \
|
||||
H5Oprivate.h \
|
||||
H5Opublic.h \
|
||||
H5HGprivate.h \
|
||||
@@ -1059,29 +1013,32 @@ H5G.o: \
|
||||
H5Spublic.h \
|
||||
H5Zprivate.h \
|
||||
H5Zpublic.h \
|
||||
H5MMprivate.h \
|
||||
H5MMpublic.h
|
||||
H5Gnode.o: \
|
||||
H5Gnode.c \
|
||||
H5private.h \
|
||||
H5public.h \
|
||||
H5config.h \
|
||||
H5ACprivate.h \
|
||||
H5ACpublic.h \
|
||||
H5Fprivate.h \
|
||||
H5Fpublic.h \
|
||||
H5Ipublic.h \
|
||||
H5Dpublic.h \
|
||||
H5Bprivate.h \
|
||||
H5Bpublic.h \
|
||||
H5Eprivate.h \
|
||||
H5Epublic.h \
|
||||
H5Gpkg.h \
|
||||
H5ACprivate.h \
|
||||
H5ACpublic.h \
|
||||
H5HLprivate.h \
|
||||
H5HLpublic.h
|
||||
H5R.o: \
|
||||
H5R.c \
|
||||
H5Rprivate.h \
|
||||
H5Rpublic.h \
|
||||
H5Ipublic.h \
|
||||
H5public.h \
|
||||
H5config.h \
|
||||
H5Dprivate.h \
|
||||
H5Dpublic.h \
|
||||
H5private.h \
|
||||
H5Fprivate.h \
|
||||
H5Fpublic.h \
|
||||
H5Gprivate.h \
|
||||
H5Gpublic.h \
|
||||
H5Bprivate.h \
|
||||
H5Bpublic.h \
|
||||
H5HLprivate.h \
|
||||
H5HLpublic.h \
|
||||
H5MFprivate.h \
|
||||
H5MFpublic.h \
|
||||
H5MMprivate.h \
|
||||
H5MMpublic.h \
|
||||
H5Oprivate.h \
|
||||
H5Opublic.h \
|
||||
H5HGprivate.h \
|
||||
@@ -1090,10 +1047,76 @@ H5R.o: \
|
||||
H5Tpublic.h \
|
||||
H5Sprivate.h \
|
||||
H5Spublic.h \
|
||||
H5Zprivate.h \
|
||||
H5Zpublic.h \
|
||||
H5Zprivate.h
|
||||
H5HL.o: \
|
||||
H5HL.c \
|
||||
H5private.h \
|
||||
H5public.h \
|
||||
H5config.h \
|
||||
H5ACprivate.h \
|
||||
H5ACpublic.h \
|
||||
H5Fprivate.h \
|
||||
H5Fpublic.h \
|
||||
H5Ipublic.h \
|
||||
H5Dpublic.h \
|
||||
H5Eprivate.h \
|
||||
H5Epublic.h
|
||||
H5Epublic.h \
|
||||
H5HLprivate.h \
|
||||
H5HLpublic.h \
|
||||
H5MFprivate.h \
|
||||
H5MFpublic.h \
|
||||
H5MMprivate.h
|
||||
H5O.o: \
|
||||
H5O.c \
|
||||
H5private.h \
|
||||
H5public.h \
|
||||
H5config.h \
|
||||
H5ACprivate.h \
|
||||
H5ACpublic.h \
|
||||
H5Fprivate.h \
|
||||
H5Fpublic.h \
|
||||
H5Ipublic.h \
|
||||
H5Dpublic.h \
|
||||
H5Eprivate.h \
|
||||
H5Epublic.h \
|
||||
H5MFprivate.h \
|
||||
H5MFpublic.h \
|
||||
H5MMprivate.h \
|
||||
H5MMpublic.h \
|
||||
H5Oprivate.h \
|
||||
H5Opublic.h \
|
||||
H5Gprivate.h \
|
||||
H5Gpublic.h \
|
||||
H5Bprivate.h \
|
||||
H5Bpublic.h \
|
||||
H5HGprivate.h \
|
||||
H5HGpublic.h \
|
||||
H5Tprivate.h \
|
||||
H5Tpublic.h \
|
||||
H5Sprivate.h
|
||||
H5S.o: \
|
||||
H5S.c \
|
||||
H5private.h \
|
||||
H5public.h \
|
||||
H5config.h \
|
||||
H5Iprivate.h \
|
||||
H5Ipublic.h \
|
||||
H5Eprivate.h \
|
||||
H5Epublic.h \
|
||||
H5MMprivate.h \
|
||||
H5MMpublic.h \
|
||||
H5Oprivate.h \
|
||||
H5Opublic.h \
|
||||
H5Fprivate.h \
|
||||
H5Fpublic.h \
|
||||
H5Dpublic.h \
|
||||
H5Gprivate.h \
|
||||
H5Gpublic.h \
|
||||
H5Bprivate.h \
|
||||
H5Bpublic.h \
|
||||
H5HGprivate.h \
|
||||
H5HGpublic.h \
|
||||
H5Tprivate.h
|
||||
H5T.o: \
|
||||
H5T.c \
|
||||
H5private.h \
|
||||
@@ -1122,26 +1145,3 @@ H5T.o: \
|
||||
H5Eprivate.h \
|
||||
H5Epublic.h \
|
||||
H5MMprivate.h
|
||||
H5S.o: \
|
||||
H5S.c \
|
||||
H5private.h \
|
||||
H5public.h \
|
||||
H5config.h \
|
||||
H5Iprivate.h \
|
||||
H5Ipublic.h \
|
||||
H5Eprivate.h \
|
||||
H5Epublic.h \
|
||||
H5MMprivate.h \
|
||||
H5MMpublic.h \
|
||||
H5Oprivate.h \
|
||||
H5Opublic.h \
|
||||
H5Fprivate.h \
|
||||
H5Fpublic.h \
|
||||
H5Dpublic.h \
|
||||
H5Gprivate.h \
|
||||
H5Gpublic.h \
|
||||
H5Bprivate.h \
|
||||
H5Bpublic.h \
|
||||
H5HGprivate.h \
|
||||
H5HGpublic.h \
|
||||
H5Tprivate.h
|
||||
|
||||
@@ -29,6 +29,7 @@ static const char *FileHeader = "\n\
|
||||
*
|
||||
*-------------------------------------------------------------------------
|
||||
*/
|
||||
#undef NDEBUG
|
||||
#include <assert.h>
|
||||
#include <math.h>
|
||||
#include <pwd.h>
|
||||
@@ -599,6 +600,7 @@ bit_cmp(int nbytes, int *perm, void *_a, void *_b)
|
||||
if ((aa & 1) != (bb & 1)) return i * 8 + j;
|
||||
}
|
||||
assert("INTERNAL ERROR" && 0);
|
||||
abort();
|
||||
}
|
||||
}
|
||||
return -1;
|
||||
|
||||
@@ -177,6 +177,7 @@ writer (int wrt_n)
|
||||
FILE *out = fopen(DNAME, "w");
|
||||
|
||||
printf("%-70s", "Writing large dataset");
|
||||
fflush(stdout);
|
||||
|
||||
/*
|
||||
* Make sure that `hsize_t' is large enough to represent the entire data
|
||||
|
||||
12
test/chunk.c
12
test/chunk.c
@@ -40,17 +40,17 @@
|
||||
#define RM_CACHE_STRT 25
|
||||
#define RM_CACHE_END 25
|
||||
#define RM_CACHE_DELT 5
|
||||
#define RM_START 0.20
|
||||
#define RM_START 0.50
|
||||
#define RM_END 5.00
|
||||
#define RM_DELTA 0.0025
|
||||
#define RM_DELTA 0.50
|
||||
|
||||
/* Diagonal test */
|
||||
#define DIAG_CACHE_STRT 25
|
||||
#define DIAG_CACHE_END 25
|
||||
#define DIAG_CACHE_DELT 5
|
||||
#define DIAG_START 0.20
|
||||
#define DIAG_START 0.50
|
||||
#define DIAG_END 5.00
|
||||
#define DIAG_DELTA 0.0025
|
||||
#define DIAG_DELTA 0.50
|
||||
|
||||
static size_t nio_g;
|
||||
static hid_t fapl_g = -1;
|
||||
@@ -299,6 +299,8 @@ main (void)
|
||||
create_dataset ();
|
||||
f = fopen ("x-gnuplot", "w");
|
||||
|
||||
printf("Test %8s %8s %8s\n", "CacheSz", "ChunkSz", "Effic");
|
||||
printf("--------- -------- -------- --------\n");
|
||||
|
||||
#if 1
|
||||
/*
|
||||
@@ -345,7 +347,7 @@ main (void)
|
||||
fclose (d);
|
||||
fprintf (f, "pause -1\n");
|
||||
#endif
|
||||
|
||||
|
||||
#if 1
|
||||
/*
|
||||
* Test row-major writing of the dataset with various sizes of request
|
||||
|
||||
@@ -13,6 +13,7 @@
|
||||
#include <stdlib.h>
|
||||
#include <stdio.h>
|
||||
#include <sys/stat.h>
|
||||
#include <unistd.h>
|
||||
|
||||
|
||||
/*-------------------------------------------------------------------------
|
||||
|
||||
@@ -386,8 +386,8 @@ list (hid_t group, const char *name, void __unused__ *cd)
|
||||
H5Gget_comment(group, name, sizeof(comment), comment);
|
||||
strcpy(comment+sizeof(comment)-4, "...");
|
||||
if (comment[0]) printf(" %-10s %s\n", "Comment:", comment);
|
||||
if (dispatch_g[sb.type].list2) (dispatch_g[sb.type].list2)(obj);
|
||||
}
|
||||
if (dispatch_g[sb.type].list2) (dispatch_g[sb.type].list2)(obj);
|
||||
|
||||
/*
|
||||
* Close the object.
|
||||
|
||||
Reference in New Issue
Block a user