d259d6e0ab
- Fixed a few comments that Doxygen gave warnings on.
- Removed stylesheet from configuration so Doxygen will use the default
stylesheet and removed the CLANG-related lines to eliminate another
error since we're not using that feature, so the lines should not
present. (from cpp_doc_config)
Platforms tested:
Linux/32 2.6 (jam) - only changing comments
530 lines
21 KiB
C++
530 lines
21 KiB
C++
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
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* Copyright by The HDF Group. *
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* Copyright by the Board of Trustees of the University of Illinois. *
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* All rights reserved. *
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* *
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* This file is part of HDF5. The full HDF5 copyright notice, including *
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* terms governing use, modification, and redistribution, is contained in *
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* the files COPYING and Copyright.html. COPYING can be found at the root *
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* of the source code distribution tree; Copyright.html can be found at the *
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* root level of an installed copy of the electronic HDF5 document set and *
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* is linked from the top-level documents page. It can also be found at *
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* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
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* access to either file, you may request a copy from help@hdfgroup.org. *
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* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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#include <string>
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#include "H5Include.h"
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#include "H5Exception.h"
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#include "H5IdComponent.h"
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#include "H5PropList.h"
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#include "H5DxferProp.h"
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#include "H5private.h" // for HDmemset
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#include <iostream>
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#ifndef H5_NO_NAMESPACE
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#ifndef H5_NO_STD
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using std::cerr;
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using std::endl;
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#endif // H5_NO_STD
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#endif
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#ifndef H5_NO_NAMESPACE
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namespace H5 {
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#endif
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//--------------------------------------------------------------------------
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///\brief Constant for default dataset memory and transfer property list.
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//--------------------------------------------------------------------------
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const DSetMemXferPropList DSetMemXferPropList::DEFAULT;
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//--------------------------------------------------------------------------
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// Function DSetMemXferPropList default constructor
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///\brief Default constructor: creates a stub dataset memory and
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/// transfer property list object.
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// Programmer: Binh-Minh Ribler - 2000
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//--------------------------------------------------------------------------
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DSetMemXferPropList::DSetMemXferPropList() : PropList(H5P_DATASET_XFER) {}
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//--------------------------------------------------------------------------
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// Function DSetMemXferPropList constructor
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///\brief Creates a dataset transfer property list with transform
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/// expression.
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// Programmer: Binh-Minh Ribler - 2000
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//--------------------------------------------------------------------------
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DSetMemXferPropList::DSetMemXferPropList(const char* exp) : PropList(H5P_DATASET_XFER)
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{
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setDataTransform(exp);
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}
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//--------------------------------------------------------------------------
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// Function DSetMemXferPropList copy constructor
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///\brief Copy constructor: makes a copy of the original
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/// DSetMemXferPropList object
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///\param original - IN: Original dataset memory and transfer property
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/// list object to copy
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// Programmer: Binh-Minh Ribler - 2000
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//--------------------------------------------------------------------------
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DSetMemXferPropList::DSetMemXferPropList(const DSetMemXferPropList& original ) : PropList( original ) {}
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//--------------------------------------------------------------------------
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// Function DSetMemXferPropList overloaded constructor
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///\brief Creates a DSetMemXferPropList object using the id of an
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/// existing DSetMemXferPropList.
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///\param plist_id - IN: Id of an existing dataset memory and transfer
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/// property list
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// Programmer: Binh-Minh Ribler - 2000
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//--------------------------------------------------------------------------
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DSetMemXferPropList::DSetMemXferPropList(const hid_t plist_id) : PropList(plist_id) {}
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//--------------------------------------------------------------------------
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// Function: DSetMemXferPropList::setBuffer
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///\brief Sets type conversion and background buffers.
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///\param size - IN: Size, in bytes, of the type conversion and background buffers
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///\param tconv - IN: Pointer to application-allocated type conversion buffer
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///\param bkg - IN: Pointer to application-allocated background buffer
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///\exception H5::PropListIException
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// Programmer: Binh-Minh Ribler - 2000
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//--------------------------------------------------------------------------
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void DSetMemXferPropList::setBuffer( size_t size, void* tconv, void* bkg ) const
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{
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herr_t ret_value = H5Pset_buffer( id, size, tconv, bkg );
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if( ret_value < 0 )
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{
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throw PropListIException("DSetMemXferPropList::setBuffer",
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"H5Pset_buffer failed");
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}
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}
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//--------------------------------------------------------------------------
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// Function: DSetMemXferPropList::getBuffer
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///\brief Reads buffer settings.
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///\param tconv - IN: Pointer to application-allocated type conversion buffer
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///\param bkg - IN: Pointer to application-allocated background buffer
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///\return Buffer size, in bytes
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///\exception H5::PropListIException
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// Programmer: Binh-Minh Ribler - 2000
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//--------------------------------------------------------------------------
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size_t DSetMemXferPropList::getBuffer( void** tconv, void** bkg ) const
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{
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size_t buffer_size = H5Pget_buffer( id, tconv, bkg );
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if( buffer_size == 0 )
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{
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throw PropListIException("DSetMemXferPropList::getBuffer",
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"H5Pget_buffer returned 0 for buffer size - failure");
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}
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return( buffer_size );
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}
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//--------------------------------------------------------------------------
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// Function: DSetMemXferPropList::setPreserve
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///\brief Sets the dataset transfer property list status to true or false.
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///\param status - IN: Status to set, true or false
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///\exception H5::PropListIException
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// Programmer: Binh-Minh Ribler - 2000
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//--------------------------------------------------------------------------
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void DSetMemXferPropList::setPreserve( bool status ) const
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{
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herr_t ret_value = H5Pset_preserve( id, (hbool_t) status );
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if( ret_value < 0 )
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{
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throw PropListIException("DSetMemXferPropList::setPreserve",
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"H5Pset_preserve failed");
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}
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}
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//--------------------------------------------------------------------------
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// Function: DSetMemXferPropList::getPreserve
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///\brief Checks status of the dataset transfer property list.
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///\return Status of the dataset transfer property list
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///\exception H5::PropListIException
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// Programmer: Binh-Minh Ribler - 2000
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//--------------------------------------------------------------------------
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bool DSetMemXferPropList::getPreserve() const
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{
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int ret_value = H5Pget_preserve( id );
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if( ret_value > 0 )
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return true;
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else if( ret_value == 0 )
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return false;
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else
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{
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throw PropListIException("DSetMemXferPropList::getPreserve",
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"H5Pget_preserve returned negative value for status");
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}
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}
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//--------------------------------------------------------------------------
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// Function: DSetMemXferPropList::setBtreeRatios
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///\brief Sets B-tree split ratios for a dataset transfer property list.
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///\param left - IN: B-tree split ratio for left-most nodes
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///\param middle - IN: B-tree split ratio for right-most nodes and lone nodes
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///\param right - IN: B-tree split ratio for all other nodes
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///\exception H5::PropListIException
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// Programmer: Binh-Minh Ribler - 2000
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//--------------------------------------------------------------------------
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void DSetMemXferPropList::setBtreeRatios( double left, double middle, double right ) const
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{
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herr_t ret_value = H5Pset_btree_ratios( id, left, middle, right );
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if( ret_value < 0 )
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{
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throw PropListIException("DSetMemXferPropList::setBtreeRatios",
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"H5Pset_btree_ratios failed");
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}
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}
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//--------------------------------------------------------------------------
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// Function: DSetMemXferPropList::getBtreeRatios
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///\brief Gets B-tree split ratios for a dataset transfer property list.
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///\param left - OUT: B-tree split ratio for left-most nodes
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///\param middle - OUT: B-tree split ratio for right-most nodes and lone nodes
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///\param right - OUT: B-tree split ratio for all other nodes
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///\exception H5::PropListIException
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// Programmer: Binh-Minh Ribler - 2000
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//--------------------------------------------------------------------------
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void DSetMemXferPropList::getBtreeRatios( double& left, double& middle, double& right ) const
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{
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herr_t ret_value = H5Pget_btree_ratios( id, &left, &middle, &right );
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if( ret_value < 0 )
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{
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throw PropListIException("DSetMemXferPropList::getBtreeRatios",
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"H5Pget_btree_ratios failed");
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}
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}
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//--------------------------------------------------------------------------
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// Function: DSetMemXferPropList::setDataTransform
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///\brief Sets data transform expression.
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///\param expression - IN: null-terminated data transform expression (char*)
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///\exception H5::PropListIException
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// Programmer: Binh-Minh Ribler - Mar, 2014
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//--------------------------------------------------------------------------
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void DSetMemXferPropList::setDataTransform(const char* expression) const
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{
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herr_t ret_value = H5Pset_data_transform( id, expression);
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if( ret_value < 0 )
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{
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throw PropListIException("DSetMemXferPropList::setDataTransform",
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"H5Pset_data_transform failed");
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}
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}
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//--------------------------------------------------------------------------
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// Function: DSetMemXferPropList::setDataTransform
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///\brief This is an overloaded member function, provided for convenience.
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/// It takes a reference to a \c H5std_string for the expression.
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///\param expression - IN: H5std_string data transform expression
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///\exception H5::PropListIException
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// Programmer: Binh-Minh Ribler - Mar, 2014
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//--------------------------------------------------------------------------
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void DSetMemXferPropList::setDataTransform(const H5std_string& expression) const
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{
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setDataTransform(expression.c_str());
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}
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//--------------------------------------------------------------------------
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// Function: DSetMemXferPropList::getDataTransform
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///\brief Sets data transform expression.
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///\param exp - OUT: buffer for data transform expression (char*)
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///\param buf_size - IN: size of buffer for expression, including the
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/// null terminator
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///\exception H5::PropListIException
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// Programmer: Binh-Minh Ribler - Mar, 2014
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//--------------------------------------------------------------------------
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ssize_t DSetMemXferPropList::getDataTransform(char* exp, size_t buf_size) const
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{
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// H5Pget_data_transform will get buf_size characters of the expression
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// including the null terminator
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ssize_t exp_len;
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exp_len = H5Pget_data_transform(id, exp, buf_size);
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// H5Pget_data_transform returns a negative value, raise an exception
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if (exp_len < 0)
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{
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throw PropListIException("DSetMemXferPropList::getDataTransform",
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"H5Pget_data_transform failed");
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}
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// H5Pget_data_transform will put a null terminator at the end of the
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// expression or at [buf_size-1] if the expression is at least the size
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// of the buffer.
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// Return the expression length, which might be different from buf_size
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return(exp_len);
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}
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//--------------------------------------------------------------------------
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// Function: DSetMemXferPropList::getDataTransform
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///\brief This is an overloaded member function, provided for convenience.
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/// It takes no parameter and returns a \c H5std_string for the expression.
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///\exception H5::PropListIException
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// Programmer: Binh-Minh Ribler - Mar, 2014
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//--------------------------------------------------------------------------
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H5std_string DSetMemXferPropList::getDataTransform() const
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{
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// Initialize string to "", so that if there is no expression, the returned
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// string will be empty
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H5std_string expression("");
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// Preliminary call to get the expression's length
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ssize_t exp_len = H5Pget_data_transform(id, NULL, (size_t)0);
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// If H5Pget_data_transform returns a negative value, raise an exception
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if (exp_len < 0)
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{
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throw PropListIException("DSetMemXferPropList::getDataTransform", "H5Pget_data_transform failed");
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}
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// If expression exists, calls C routine again to get it
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else if (exp_len > 0)
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{
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// Temporary buffer for char* expression
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char* exp_C = new char[exp_len+1];
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HDmemset(exp_C, 0, exp_len+1); // clear buffer
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// Used overloaded function
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exp_len = getDataTransform(exp_C, exp_len+1);
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// Convert the C expression to return
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expression = exp_C;
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// Clean up resource
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delete []exp_C;
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}
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// Return the string expression
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return(expression);
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}
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//--------------------------------------------------------------------------
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// Function: DSetMemXferPropList::getTypeConvCB
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///\brief Sets an exception handling callback for datatype conversion
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/// for a dataset transfer property list.
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///\param op - IN: User's function
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///\param user_data - IN: User's data
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///\exception H5::PropListIException
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// Programmer: Binh-Minh Ribler - April, 2004
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//--------------------------------------------------------------------------
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void DSetMemXferPropList::setTypeConvCB( H5T_conv_except_func_t op, void *user_data) const
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{
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herr_t ret_value = H5Pset_type_conv_cb( id, op, user_data);
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if( ret_value < 0 )
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{
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throw PropListIException("DSetMemXferPropList::setTypeConvCB",
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"H5Pset_type_conv_cb failed");
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}
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}
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//--------------------------------------------------------------------------
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// Function: DSetMemXferPropList::getTypeConvCB
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///\brief Gets the exception handling callback function and data.
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///\param op - IN: Retrieved user function
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///\param user_data - IN: Retrieved user data
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///\exception H5::PropListIException
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// Programmer: Binh-Minh Ribler - April, 2004
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//--------------------------------------------------------------------------
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void DSetMemXferPropList::getTypeConvCB( H5T_conv_except_func_t *op, void **user_data) const
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{
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herr_t ret_value = H5Pget_type_conv_cb( id, op, user_data);
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if( ret_value < 0 )
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{
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throw PropListIException("DSetMemXferPropList::getTypeConvCB",
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"H5Pget_type_conv_cb failed");
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}
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}
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//--------------------------------------------------------------------------
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// Function: DSetMemXferPropList::setVlenMemManager
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///\brief Sets the memory manager for variable-length datatype allocation.
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///\param alloc_func - IN: User's allocate routine
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///\param alloc_info - IN: User's allocation parameters
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///\param free_func - IN: User's free routine
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///\param free_info - IN: User's free parameters
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///\exception H5::PropListIException
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// Programmer: Binh-Minh Ribler - 2000
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//--------------------------------------------------------------------------
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void DSetMemXferPropList::setVlenMemManager( H5MM_allocate_t alloc_func, void* alloc_info, H5MM_free_t free_func, void* free_info ) const
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{
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herr_t ret_value = H5Pset_vlen_mem_manager( id, alloc_func, alloc_info,
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free_func, free_info );
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if( ret_value < 0 )
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{
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throw PropListIException("DSetMemXferPropList::setVlenMemManager",
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"H5Pset_vlen_mem_manager failed");
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}
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}
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//--------------------------------------------------------------------------
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// Function: DSetMemXferPropList::setVlenMemManager
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///\brief Sets the memory manager for variable-length datatype
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/// allocation - system \c malloc and \c free will be used.
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///
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///\exception H5::PropListIException
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// Programmer: Binh-Minh Ribler - 2000
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//--------------------------------------------------------------------------
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void DSetMemXferPropList::setVlenMemManager() const
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{
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setVlenMemManager( NULL, NULL, NULL, NULL );
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}
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//--------------------------------------------------------------------------
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// Function: DSetMemXferPropList::getVlenMemManager
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///\brief Gets the memory manager for variable-length datatype allocation
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///\param alloc_func - OUT: User's allocate routine
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///\param alloc_info - OUT: User's allocation parameters
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///\param free_func - OUT: User's free routine
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///\param free_info - OUT: User's free parameters
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///\exception H5::PropListIException
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// Programmer: Binh-Minh Ribler - 2000
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//--------------------------------------------------------------------------
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void DSetMemXferPropList::getVlenMemManager( H5MM_allocate_t& alloc_func, void** alloc_info, H5MM_free_t& free_func, void** free_info ) const
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{
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herr_t ret_value = H5Pget_vlen_mem_manager( id, &alloc_func, alloc_info, &free_func, free_info );
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if( ret_value < 0 )
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{
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throw PropListIException("DSetMemXferPropList::getVlenMemManager",
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"H5Pget_vlen_mem_manager failed");
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}
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}
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//--------------------------------------------------------------------------
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// Function: DSetMemXferPropList::setSmallDataBlockSize
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///\brief Sets the size of a contiguous block reserved for small data.
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///\param size - IN: Maximum size, in bytes, of the small data block.
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///\exception H5::PropListIException
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///\par Description
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/// For detail, please refer to the C layer Reference Manual at:
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/// http://www.hdfgroup.org/HDF5/doc/RM/RM_H5P.html#Property-SetSmallData
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// Programmer: Binh-Minh Ribler - April, 2004
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//--------------------------------------------------------------------------
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void DSetMemXferPropList::setSmallDataBlockSize(hsize_t size)
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{
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herr_t ret_value = H5Pset_small_data_block_size(id, size);
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if (ret_value < 0)
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{
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throw PropListIException("DSetMemXferPropList::setSmallDataBlockSize",
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"H5Pset_small_data_block_size failed");
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}
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}
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//--------------------------------------------------------------------------
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// Function: DSetMemXferPropList::getSmallDataBlockSize
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///\brief Returns the current small data block size setting.
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///\return Size of the small data block, in bytes
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///\exception H5::PropListIException
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// Programmer: Binh-Minh Ribler - April, 2004
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//--------------------------------------------------------------------------
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hsize_t DSetMemXferPropList::getSmallDataBlockSize()
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{
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hsize_t size;
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herr_t ret_value = H5Pget_small_data_block_size(id, &size);
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if (ret_value < 0)
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{
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throw PropListIException("DSetMemXferPropList::getSmallDataBlockSize",
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"H5Pget_small_data_block_size failed");
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}
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return(size);
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}
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//--------------------------------------------------------------------------
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// Function: DSetMemXferPropList::setHyperVectorSize
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///\brief Sets number of I/O vectors to be read/written in hyperslab I/O.
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///
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///\exception H5::PropListIException
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///\par Description
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/// For information, please refer to the C layer Reference
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/// Manual at:
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/// http://www.hdfgroup.org/HDF5/doc/RM/RM_H5P.html#Property-SetHyperVectorSize
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// Programmer: Binh-Minh Ribler - April, 2004
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//--------------------------------------------------------------------------
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void DSetMemXferPropList::setHyperVectorSize(size_t vector_size)
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{
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herr_t ret_value = H5Pset_hyper_vector_size(id, vector_size);
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if (ret_value < 0)
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{
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throw PropListIException("DSetMemXferPropList::setHyperVectorSize",
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"H5Pset_hyper_vector_size failed");
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}
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}
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//--------------------------------------------------------------------------
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// Function: DSetMemXferPropList::getHyperVectorSize
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///\brief Returns the number of I/O vectors to be read/written in
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/// hyperslab I/O.
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///\return Number of I/O vectors
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///\exception H5::PropListIException
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// Programmer: Binh-Minh Ribler - April, 2004
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//--------------------------------------------------------------------------
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size_t DSetMemXferPropList::getHyperVectorSize()
|
|
{
|
|
size_t vector_size;
|
|
herr_t ret_value = H5Pget_hyper_vector_size(id, &vector_size);
|
|
if (ret_value < 0)
|
|
{
|
|
throw PropListIException("DSetMemXferPropList::getHyperVectorSize",
|
|
"H5Pget_hyper_vector_size failed");
|
|
}
|
|
return(vector_size);
|
|
}
|
|
|
|
//--------------------------------------------------------------------------
|
|
// Function: DSetMemXferPropList::setEDCCheck
|
|
///\brief Enables or disables error-detecting for a dataset reading
|
|
/// process.
|
|
///\param check - IN: Specifies whether error detection is enabled or
|
|
/// disabled
|
|
///\exception H5::PropListIException
|
|
///\par Description
|
|
/// The error detection algorithm used is the algorithm previously
|
|
/// specified in the corresponding dataset creation property
|
|
/// list. This function does not affect the use of error
|
|
/// detection in the writing process.
|
|
///\par
|
|
/// Valid values are as follows:
|
|
/// \li \c H5Z_ENABLE_EDC (default)
|
|
/// \li \c H5Z_DISABLE_EDC
|
|
// Programmer: Binh-Minh Ribler - April, 2004
|
|
//--------------------------------------------------------------------------
|
|
void DSetMemXferPropList::setEDCCheck(H5Z_EDC_t check)
|
|
{
|
|
herr_t ret_value = H5Pset_edc_check(id, check);
|
|
if (ret_value < 0)
|
|
{
|
|
throw PropListIException("DSetMemXferPropList::setEDCCheck",
|
|
"H5Pset_edc_check failed");
|
|
}
|
|
}
|
|
|
|
//--------------------------------------------------------------------------
|
|
// Function: DSetMemXferPropList::getEDCCheck
|
|
///\brief Determines whether error-detection is enabled for dataset reads.
|
|
///\return \c H5Z_ENABLE_EDC or \c H5Z_DISABLE_EDC
|
|
///\exception H5::PropListIException
|
|
// Programmer: Binh-Minh Ribler - April, 2004
|
|
//--------------------------------------------------------------------------
|
|
H5Z_EDC_t DSetMemXferPropList::getEDCCheck()
|
|
{
|
|
H5Z_EDC_t check = H5Pget_edc_check(id);
|
|
if (check < 0)
|
|
{
|
|
throw PropListIException("DSetMemXferPropList::getEDCCheck",
|
|
"H5Pget_edc_check failed");
|
|
}
|
|
return(check);
|
|
}
|
|
|
|
//--------------------------------------------------------------------------
|
|
// Function: DSetMemXferPropList destructor
|
|
///\brief Noop destructor.
|
|
// Programmer Binh-Minh Ribler - 2000
|
|
//--------------------------------------------------------------------------
|
|
DSetMemXferPropList::~DSetMemXferPropList() {}
|
|
|
|
#ifndef H5_NO_NAMESPACE
|
|
} // end namespace
|
|
#endif
|
|
|