Fixing Bug 2092 - h5dump does not display index for a dataset
Description:
improve the test case from previous checkin r20108, which also display
dataset via region reference.
Previous Log:
h5dump skip displaying array indices every certain number when the
array type dataset is relatively big. The certain number varies
according to the size of each array.
This checkin fix the skipping array indices problem. This fix also
correct indentation of the dataset data output.
Tested:
jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Cmake - jam
627 lines
21 KiB
Batchfile
627 lines
21 KiB
Batchfile
@echo off
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rem
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rem Copyright by The HDF Group.
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rem Copyright by the Board of Trustees of the University of Illinois.
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rem All rights reserved.
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rem
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rem This file is part of HDF5. The full HDF5 copyright notice, including
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rem terms governing use, modification, and redistribution, is contained in
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rem the files COPYING and Copyright.html. COPYING can be found at the root
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rem of the source code distribution tree; Copyright.html can be found at the
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rem root level of an installed copy of the electronic HDF5 document set and
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rem is linked from the top-level documents page. It can also be found at
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rem http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
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rem access to either file, you may request a copy from help@hdfgroup.org.
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rem
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rem Tests for the h5dump tool
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rem
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rem Created: Scott Wegner, 8/23/07
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rem Modified: Scott Wegner, 5/12/08
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rem
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setlocal enabledelayedexpansion
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pushd %~dp0
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set h5pubconf=%CD%\..\..\src\h5pubconf.h
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rem Determine which filters are available
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rem On Windows, the function :detect_filter sets these for us
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call :detect_filter szip
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call :detect_filter deflate
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call :detect_filter shuffle
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call :detect_filter fletcher32
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call :detect_filter nbit
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call :detect_filter scaleoffset
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rem The tool name
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set dumper=h5dump%2
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rem The path of the tool library
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set dumper_bin=%CD%\..\%dumper%\%1\%dumper%
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set testdir=%CD%\..\testfiles
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rem The h5diff tool name
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set h5diff=..\h5diff%2\%1\h5diff%2
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rem The path of the h5diff tool binary
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set h5diff_bin=%CD%\%h5diff%
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rem The h5import tool name
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set h5import=..\h5import%2\%1\h5import%2
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rem The path of the h5import tool binary
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set h5import_bin=%CD%\%h5import%
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set nerrors=0
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set verbose=yes
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set srcdir=%CD%
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if not exist %testdir% mkdir %testdir%
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goto main
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rem Print a line-line message left justified in a field of 70 characters
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rem beginning with the word "Testing".
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rem
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:testing
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set test_msg=Testing %dumper%
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for %%a in (%*) do (
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if %%a neq PASSED (
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if %%a neq *FAILED* (
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set test_msg=!test_msg! %%~nxa
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) )
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)
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rem We need to replace PERCENT here with "%" for tests that use a percent
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rem sign. --SJW 5/12/08
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set test_msg=!test_msg:PERCENT=%%!
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echo.%test_msg:~0,69% %1
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exit /b
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rem Run a test and print PASS or *FAIL*. If a test fails then increment
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rem the `nerrors' global variable and (if $verbose is set) display the
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rem difference between the actual output and the expected output. The
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rem expected output is given as the first argument to this function and
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rem the actual output file is calculated by replacing the `.ddl' with
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rem `.out'. The actual output is not removed if $HDF5_NOCLEANUP has a
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rem non-zero value.
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rem
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:tooltest
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set expect=%CD%\..\testfiles\%1
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set actual=%CD%\..\testfiles\%~n1.out
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set actual_err=%CD%\..\testfiles\%~n1.err
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rem We define %params% here because Windows `shift` command doesn't affect
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rem the %* variable. --SJW 8/23/07
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set params=%*
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rem If there is not 2nd parameter, that means we have no filename, which
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rem implies that we are on the "tnofilename" test. Make sure we remove the
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rem expected output from the params, and add a space. --SJW 8/27/07
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if "%2"=="" (
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set params=
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) else (
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set params=!params:* =!
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)
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rem Run test.
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(
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rem We need to replace PERCENT here with "%" for tests that use percents
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rem Also remove quotes here, because Linux 'echo' command strips them.
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rem --SJW 8/24/07
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set params_echo=!params:PERCENT=%%!
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echo.#############################
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echo.Expected output for 'h5dump !params_echo:"=!'
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echo.#############################
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pushd %CD%\..\testfiles
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%dumper_bin% !params:PERCENT=%%!
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popd
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) > %actual% 2> %actual_err%
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type %actual_err% >> %actual%
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if not exist %expect% (
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rem Create the expect file if it doesn't yet exist.
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call :testing CREATED %params%
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copy /y %actual% %expect% > nul
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) else (
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fc /w %expect% %actual% > nul
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if !errorlevel! equ 0 (
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call :testing PASSED %params%
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) else (
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call :testing *FAILED* %params%
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echo. Expected results ^(*.ddl^) differs from actual results ^(*.out^)
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set /a nerrors=!nerrors!+1
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if "yes"=="%verbose%" fc /w %expect% %actual%
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)
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)
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rem Clean up output file
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if not defined hdf5_nocleanup (
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del /f %actual% %actual_err%
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)
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exit /b
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rem same as TOOLTEST but does not print the header Expected output
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rem use for the binary tests that expect a full path in -o
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:tooltest1
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set expect=%srcdir%\..\testfiles\%1
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set actual=%CD%\..\testfiles\%~n1.out
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set actual_err=%CD%\..\testfiles\%~n1.err
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rem We define %params% here because Windows `shift` command doesn't affect
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rem the %* variable. --SJW 8/23/07
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set params=%*
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rem If there is not 2nd parameter, that means we have no filename, which
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rem implies that we are on the "tnofilename" test. Make sure we remove the
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rem expected output from the params, and add a space. --SJW 8/27/07
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if "%2"=="" (
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set params=
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) else (
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set params=!params:* =!
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)
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rem Run test.
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(
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pushd %CD%\..\testfiles
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%dumper_bin% !params:PERCENT=%%!
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popd
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) > %actual% 2> %actual_err%
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type %actual_err% >> %actual%
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if not exist %expect% (
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rem Create the expect file if it doesn't yet exist.
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call :testing CREATED %params%
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copy /y %actual% %expect% > nul
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) else (
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fc /w %expect% %actual% > nul
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if !errorlevel! equ 0 (
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call :testing PASSED %params%
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) else (
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call :testing *FAILED* %params%
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echo. Expected results ^(*.ddl^) differs from actual results ^(*.out^)
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set /a nerrors=!nerrors!+1
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if "yes"=="%verbose%" fc /w %expect% %actual%
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)
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)
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rem Clean up output file
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if not defined hdf5_nocleanup (
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del /f %actual% %actual_err%
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)
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exit /b
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rem Print a "SKIP" message
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:skip
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call :testing -SKIP- %*
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exit /b
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rem Print a line-line message left justified in a field of 70 characters
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rem
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:print_h5diff
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set test_msg=Running h5diff
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for %%a in (%*) do (
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if %%a neq PASSED (
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if %%a neq *FAILED* (
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set test_msg=!test_msg! %%~nxa
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) )
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)
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set test_msg=%test_msg%
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echo.%test_msg:~0,69% %1
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exit /b
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rem Call the h5diff tool
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rem
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:difftest
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(
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pushd %CD%\..\testfiles
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%h5diff_bin% %* -q
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popd
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)
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if %errorlevel% neq 0 (
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call :print_h5diff *FAILED* %*
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set /a nerrors=!nerrors!+1
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) else (
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call :print_h5diff PASSED %*
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)
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exit /b
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rem Print a line-line message left justified in a field of 70 characters
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rem beginning with the word "Verifying".
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rem
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:print_h5import
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set test_msg=Running h5import
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for %%a in (%*) do (
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if %%a neq PASSED (
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if %%a neq *FAILED* (
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set test_msg=!test_msg! %%~nxa
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) )
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)
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set test_msg=%test_msg%
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echo.%test_msg:~0,69% %1
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exit /b
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rem Call the h5import tool
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rem
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:importtest
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rem Remove the output hdf5 file if it exists
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set hdf5_file=%CD%\..\testfiles\%5
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if exist %hdf5_file% (
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del /f %hdf5_file%
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)
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(
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pushd %CD%\..\testfiles
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%h5import_bin% %*
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popd
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)
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if %errorlevel% neq 0 (
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call :print_h5import *FAILED* %*
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set /a nerrors=!nerrors!+1
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) else (
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call :print_h5import PASSED %*
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)
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exit /b
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rem This is a Windows-specific function that detects if the filter passed
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rem should be enabled for this test script. It searches H5pubconf.h for the
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rem string "#define H5_HAVE_FILTER_%1" and sets the variable "use_filter_%1"
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rem accordingly. On other platforms, this variable is set in the Makefile.
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rem If we find a better way to test this in the future, we should use it.
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rem --SJW 9/4/07
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:detect_filter
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findstr /b /i /c:"#define H5_HAVE_FILTER_%1" %h5pubconf% > nul
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if %errorlevel% equ 0 (
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set use_filter_%1=yes
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) else (
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set use_filter_%1=no
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)
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exit /b
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rem ############################################################################
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rem ############################################################################
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rem # T H E T E S T S ###
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rem ############################################################################
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rem ############################################################################
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:main
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rem test for signed/unsigned datasets
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call :tooltest packedbits.ddl packedbits.h5
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rem test for displaying groups
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call :tooltest tgroup-1.ddl tgroup.h5
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rem test for displaying the selected groups
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call :tooltest tgroup-2.ddl --group=/g2 --group / -g /y tgroup.h5
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rem test for displaying simple space datasets
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call :tooltest tdset-1.ddl tdset.h5
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rem test for displaying selected datasets
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call :tooltest tdset-2.ddl -H -d dset1 -d /dset2 --dataset=dset3 tdset.h5
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rem test for displaying attributes
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call :tooltest tattr-1.ddl tattr.h5
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rem test for displaying the selected attributes of string type and scalar space
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call :tooltest tattr-2.ddl -a /attr1 --attribute /attr4 --attribute=/attr5 tattr.h5
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rem test for header and error messages
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call :tooltest tattr-3.ddl --header -a /attr2 --attribute=/attr tattr.h5
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rem test for displaying attributes in shared datatype (also in group and dataset)
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call :tooltest tnamed_dtype_attr.ddl tnamed_dtype_attr.h5
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rem test for displaying soft links and user-defined links
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call :tooltest tslink-1.ddl tslink.h5
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call :tooltest tudlink-1.ddl tudlink.h5
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rem test for displaying the selected link
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call :tooltest tslink-2.ddl -l slink2 tslink.h5
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call :tooltest tudlink-2.ddl -l udlink2 tudlink.h5
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rem tests for hard links
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call :tooltest thlink-1.ddl thlink.h5
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call :tooltest thlink-2.ddl -d /g1/dset2 --dataset /dset1 --dataset=/g1/g1.1/dset3 thlink.h5
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call :tooltest thlink-3.ddl -d /g1/g1.1/dset3 --dataset /g1/dset2 --dataset=/dset1 thlink.h5
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call :tooltest thlink-4.ddl -g /g1 thlink.h5
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call :tooltest thlink-5.ddl -d /dset1 -g /g2 -d /g1/dset2 thlink.h5
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rem tests for compound data types
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call :tooltest tcomp-1.ddl tcompound.h5
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rem test for named data types
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call :tooltest tcomp-2.ddl -t /type1 --datatype /type2 --datatype=/group1/type3 tcompound.h5
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rem test for unamed type
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call :tooltest tcomp-3.ddl -t /#6632 -g /group2 tcompound.h5
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rem test complicated compound datatype
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call :tooltest tcomp-4.ddl tcompound_complex.h5
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rem test for the nested compound type
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call :tooltest tnestcomp-1.ddl tnestedcomp.h5
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rem test for options
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call :tooltest tall-1.ddl tall.h5
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call :tooltest tall-2.ddl --header -g /g1/g1.1 -a attr2 tall.h5
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call :tooltest tall-3.ddl -d /g2/dset2.1 -l /g1/g1.2/g1.2.1/slink tall.h5
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rem test for loop detection
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call :tooltest tloop-1.ddl tloop.h5
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rem test for string
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call :tooltest tstr-1.ddl tstr.h5
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call :tooltest tstr-2.ddl tstr2.h5
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rem test for file created by Lib SAF team
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call :tooltest tsaf.ddl tsaf.h5
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rem test for file with variable length data
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call :tooltest tvldtypes1.ddl tvldtypes1.h5
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call :tooltest tvldtypes2.ddl tvldtypes2.h5
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call :tooltest tvldtypes3.ddl tvldtypes3.h5
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call :tooltest tvldtypes4.ddl tvldtypes4.h5
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call :tooltest tvldtypes5.ddl tvldtypes5.h5
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rem test for file with variable length string data
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call :tooltest tvlstr.ddl tvlstr.h5
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rem test for files with array data
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call :tooltest tarray1.ddl tarray1.h5
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call :tooltest tarray1_big.ddl -R tarray1_big.h5
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call :tooltest tarray2.ddl tarray2.h5
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call :tooltest tarray3.ddl tarray3.h5
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call :tooltest tarray4.ddl tarray4.h5
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call :tooltest tarray5.ddl tarray5.h5
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call :tooltest tarray6.ddl tarray6.h5
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call :tooltest tarray7.ddl tarray7.h5
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call :tooltest tarray8.ddl tarray8.h5
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rem test for files with empty data
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call :tooltest tempty.ddl tempty.h5
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rem test for files with groups that have comments
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call :tooltest tgrp_comments.ddl tgrp_comments.h5
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rem test the --filedriver flag
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call :tooltest tsplit_file.ddl --filedriver=split tsplit_file
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rem On Windows, we pass "PERCENT", and let other calls replace it with
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rem the "%". We cannot pass "%" directly because Windows interprets it as
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rem the name of the script. --SJW 8/24/07
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call :tooltest tfamily.ddl --filedriver=family tfamilyPERCENT05d.h5
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call :tooltest tmulti.ddl --filedriver=multi tmulti
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rem test for files with group names which reach > 1024 bytes in size
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call :tooltest tlarge_objname.ddl -w157 tlarge_objname.h5
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rem test '-A' to suppress data but print attr's
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call :tooltest tall-2A.ddl -A tall.h5
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rem test '-r' to print attributes in ASCII instead of decimal
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call :tooltest tall-2B.ddl -A -r tall.h5
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rem test Subsetting
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call :tooltest tall-4s.ddl --dataset=/g1/g1.1/dset1.1.1 --start=1,1 --stride=2,3 --count=3,2 --block=1,1 tall.h5
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call :tooltest tall-5s.ddl -d "/g1/g1.1/dset1.1.2[0;2;10;]" tall.h5
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call :tooltest tdset-3s.ddl -d "/dset1[1,1;;;]" tdset.h5
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rem test printing characters in ASCII instead of decimal
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call :tooltest tchar1.ddl -r tchar.h5
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rem test failure handling
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rem Missing file name
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call :tooltest tnofilename.ddl
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rem rev. 2004
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rem tests for super block
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call :tooltest tboot1.ddl -H -B -d dset tfcontents1.h5
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call :tooltest tboot2.ddl -B tfcontents2.h5
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rem test -p with a non existing dataset
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call :tooltest tperror.ddl -p -d bogus tfcontents1.h5
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rem test for file contents
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call :tooltest tcontents.ddl -n tfcontents1.h5
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rem tests for storage layout
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rem compact
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call :tooltest tcompact.ddl -H -p -d compact tfilters.h5
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rem contiguous
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call :tooltest tcontiguos.ddl -H -p -d contiguous tfilters.h5
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rem chunked
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call :tooltest tchunked.ddl -H -p -d chunked tfilters.h5
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rem external
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call :tooltest texternal.ddl -H -p -d external tfilters.h5
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rem fill values
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call :tooltest tfill.ddl -p tfvalues.h5
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rem several datatype, with references , print path
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call :tooltest treference.ddl tattr2.h5
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rem escape/not escape non printable characters
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call :tooltest tstringe.ddl -e tstr3.h5
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call :tooltest tstring.ddl tstr3.h5
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rem char data as ASCII with non escape
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call :tooltest tstring2.ddl -r -d str4 tstr3.h5
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rem array indices print/not print
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call :tooltest tindicesyes.ddl taindices.h5
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call :tooltest tindicesno.ddl -y taindices.h5
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rem ######### array indices with subsetting
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rem 1D case
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call :tooltest tindicessub1.ddl -d 1d -s 1 -S 10 -c 2 -k 3 taindices.h5
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rem 2D case
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call :tooltest tindicessub2.ddl -d 2d -s 1,2 -S 3,3 -c 3,2 -k 2,2 taindices.h5
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rem 3D case
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call :tooltest tindicessub3.ddl -d 3d -s 0,1,2 -S 1,3,3 -c 2,2,2 -k 1,2,2 taindices.h5
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rem 4D case
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call :tooltest tindicessub4.ddl -d 4d -s 0,0,1,2 -c 2,2,3,2 -S 1,1,3,3 -k 1,1,2,2 taindices.h5
|
|
|
|
|
|
rem tests for filters
|
|
rem SZIP
|
|
set option=-H -p -d szip tfilters.h5
|
|
if not "%use_filter_szip%"=="yes" (
|
|
call :skip %option%
|
|
) else (
|
|
call :tooltest tszip.ddl %option%
|
|
)
|
|
rem deflate
|
|
set option=-H -p -d deflate tfilters.h5
|
|
if not "%use_filter_deflate%"=="yes" (
|
|
call :skip %option%
|
|
) else (
|
|
call :tooltest tdeflate.ddl %option%
|
|
)
|
|
rem shuffle
|
|
set option=-H -p -d shuffle tfilters.h5
|
|
if not "%use_filter_shuffle%"=="yes" (
|
|
call :skip %option%
|
|
) else (
|
|
call :tooltest tshuffle.ddl %option%
|
|
)
|
|
rem fletcher32
|
|
set option=-H -p -d fletcher32 tfilters.h5
|
|
if not "%use_filter_fletcher32%"=="yes" (
|
|
call :skip %option%
|
|
) else (
|
|
call :tooltest tfletcher32.ddl %option%
|
|
)
|
|
rem nbit
|
|
set option=-H -p -d nbit tfilters.h5
|
|
if not "%use_filter_nbit%"=="yes" (
|
|
call :skip %option%
|
|
) else (
|
|
call :tooltest tnbit.ddl %option%
|
|
)
|
|
rem scaleoffset
|
|
set option=-H -p -d scaleoffset tfilters.h5
|
|
if not "%use_filter_scaleoffset%"=="yes" (
|
|
call :skip %option%
|
|
) else (
|
|
call :tooltest tscaleoffset.ddl %option%
|
|
)
|
|
rem all
|
|
set option=-H -p -d all tfilters.h5
|
|
rem Windows doesn't have "or" for compound conditional, so we must check
|
|
rem each one individually. --SJW 8/24/07
|
|
if not "%use_filter_fletcher32%"=="yes" (
|
|
call :skip %option%
|
|
) else if not "%use_filter_szip%"=="yes" (
|
|
call :skip %option%
|
|
) else if not "%use_filter_deflate%"=="yes" (
|
|
call :skip %option%
|
|
) else if not "%use_filter_shuffle%"=="yes" (
|
|
call :skip %option%
|
|
) else if not "%use_filter_nbit%"=="yes" (
|
|
call :skip %option%
|
|
) else if not "%use_filter_scaleoffset%"=="yes" (
|
|
call :skip %option%
|
|
) else (
|
|
call :tooltest tallfilters.ddl %option%
|
|
)
|
|
rem user defined
|
|
call :tooltest tuserfilter.ddl -H -p -d myfilter tfilters.h5
|
|
|
|
rem test for displaying objects with very long names
|
|
call :tooltest tlonglinks.ddl tlonglinks.h5
|
|
|
|
rem dimensions over 4GB, print boundary
|
|
call :tooltest tbigdims.ddl -d dset4gb -s 4294967284 -c 22 tbigdims.h5
|
|
|
|
rem hyperslab read
|
|
call :tooltest thyperslab.ddl thyperslab.h5
|
|
|
|
|
|
rem
|
|
|
|
rem test for displaying dataset and attribute of null space
|
|
call :tooltest tnullspace.ddl tnullspace.h5
|
|
|
|
rem test for long double (some systems do not have long double)
|
|
rem call :tooltest tldouble.ddl tldouble.h5
|
|
|
|
rem test for vms
|
|
call :tooltest tvms.ddl tvms.h5
|
|
|
|
rem test for binary output
|
|
rem Don't use %testdir% here, because we are already in the correct
|
|
rem directory, and using it only gets in the way of the output formatting.
|
|
rem --SJW 8/24/07
|
|
call :tooltest1 tbin1.ddl -d integer -o out1.bin -b LE tbinary.h5
|
|
|
|
rem NATIVE default. the NATIVE test can be validated with h5import/h5diff
|
|
call :tooltest1 tbin1.ddl -d integer -o out1.bin -b MEMORY tbinary.h5
|
|
call :importtest out1.bin -c out3.h5import -o out1.h5
|
|
call :difftest tbinary.h5 out1.h5 /integer /integer
|
|
|
|
call :tooltest1 tbin2.ddl -b BE -d float -o out2.bin tbinary.h5
|
|
|
|
rem the NATIVE test can be validated with h5import/h5diff
|
|
call :tooltest1 tbin3.ddl -d integer -o out3.bin -b NATIVE tbinary.h5
|
|
call :importtest out3.bin -c out3.h5import -o out3.h5
|
|
call :difftest tbinary.h5 out3.h5 /integer /integer
|
|
|
|
call :tooltest1 tbin4.ddl -d double -b FILE -o out4.bin tbinary.h5
|
|
|
|
rem Clean up binary output files
|
|
if not defined hdf5_nocleanup (
|
|
for /l %%a in (1,1,4) do del /f %testdir%\out%%a.bin
|
|
del /f %testdir%\out3.h5
|
|
)
|
|
|
|
rem test for dataset region references
|
|
call :tooltest tdatareg.ddl tdatareg.h5
|
|
call :tooltest tdataregR.ddl -R tdatareg.h5
|
|
call :tooltest tattrreg.ddl tattrreg.h5
|
|
call :tooltest tattrregR.ddl -R tattrreg.h5
|
|
|
|
rem tests for group creation order
|
|
rem "1" tracked, "2" name, root tracked
|
|
call :tooltest tordergr1.ddl --group=1 --sort_by=creation_order --sort_order=ascending tordergr.h5
|
|
call :tooltest tordergr2.ddl --group=1 --sort_by=creation_order --sort_order=descending tordergr.h5
|
|
call :tooltest tordergr3.ddl -g 2 -q name -z ascending tordergr.h5
|
|
call :tooltest tordergr4.ddl -g 2 -q name -z descending tordergr.h5
|
|
call :tooltest tordergr5.ddl -q creation_order tordergr.h5
|
|
|
|
rem tests for attribute order
|
|
call :tooltest torderattr1.ddl -H --sort_by=name --sort_order=ascending torderattr.h5
|
|
call :tooltest torderattr2.ddl -H --sort_by=name --sort_order=descending torderattr.h5
|
|
call :tooltest torderattr3.ddl -H --sort_by=creation_order --sort_order=ascending torderattr.h5
|
|
call :tooltest torderattr4.ddl -H --sort_by=creation_order --sort_order=descending torderattr.h5
|
|
|
|
rem tests for floating point user defined printf format
|
|
rem Note: Make sure to use PERCENT rather than "%", because Windows needs
|
|
rem to handle it specially. --SJW 5/12/08
|
|
call :tooltest tfpformat.ddl -m PERCENT.7f tfpformat.h5
|
|
|
|
rem tests for traversal of external links
|
|
call :tooltest textlinksrc.ddl textlinksrc.h5
|
|
call :tooltest textlinkfar.ddl textlinkfar.h5
|
|
|
|
rem test for dangling external links
|
|
call :tooltest textlink.ddl textlink.h5
|
|
|
|
|
|
|
|
if %nerrors% equ 0 (
|
|
echo.All %dumper% tests passed.
|
|
)
|
|
|
|
popd
|
|
endlocal & exit /b %nerrors%
|
|
|