Bring back various modifications to the v2 B-trees that were introduced
in the revise_chunks branch but aren't dependent on any file format or API
changes.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, w/threadsafe, in production mode
Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
Mac OS X/32 10.6.4 (amazon) in debug mode
Mac OS X/32 10.6.4 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
Mac OS X/32 10.6.4 (amazon) w/parallel, in debug mode
749 lines
27 KiB
C
749 lines
27 KiB
C
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
|
||
* Copyright by The HDF Group. *
|
||
* Copyright by the Board of Trustees of the University of Illinois. *
|
||
* All rights reserved. *
|
||
* *
|
||
* This file is part of HDF5. The full HDF5 copyright notice, including *
|
||
* terms governing use, modification, and redistribution, is contained in *
|
||
* the files COPYING and Copyright.html. COPYING can be found at the root *
|
||
* of the source code distribution tree; Copyright.html can be found at the *
|
||
* root level of an installed copy of the electronic HDF5 document set and *
|
||
* is linked from the top-level documents page. It can also be found at *
|
||
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
|
||
* access to either file, you may request a copy from help@hdfgroup.org. *
|
||
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
|
||
|
||
/* Programmer: Robb Matzke <matzke@llnl.gov>
|
||
* Wednesday, October 8, 1997
|
||
*
|
||
* Purpose: Messages related to data layout.
|
||
*/
|
||
|
||
#define H5D_PACKAGE /*suppress error about including H5Dpkg */
|
||
#define H5O_PACKAGE /*suppress error about including H5Opkg */
|
||
|
||
#include "H5private.h" /* Generic Functions */
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||
#include "H5Dpkg.h" /* Dataset functions */
|
||
#include "H5Eprivate.h" /* Error handling */
|
||
#include "H5FLprivate.h" /* Free Lists */
|
||
#include "H5MFprivate.h" /* File space management */
|
||
#include "H5MMprivate.h" /* Memory management */
|
||
#include "H5Opkg.h" /* Object headers */
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||
#include "H5Pprivate.h" /* Property lists */
|
||
|
||
|
||
/* Local macros */
|
||
|
||
|
||
/* PRIVATE PROTOTYPES */
|
||
static void *H5O_layout_decode(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh,
|
||
unsigned mesg_flags, unsigned *ioflags, const uint8_t *p);
|
||
static herr_t H5O_layout_encode(H5F_t *f, hbool_t disable_shared, uint8_t *p, const void *_mesg);
|
||
static void *H5O_layout_copy(const void *_mesg, void *_dest);
|
||
static size_t H5O_layout_size(const H5F_t *f, hbool_t disable_shared, const void *_mesg);
|
||
static herr_t H5O_layout_reset(void *_mesg);
|
||
static herr_t H5O_layout_free(void *_mesg);
|
||
static herr_t H5O_layout_delete(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh,
|
||
void *_mesg);
|
||
static void *H5O_layout_copy_file(H5F_t *file_src, void *mesg_src,
|
||
H5F_t *file_dst, hbool_t *recompute_size, H5O_copy_t *cpy_info,
|
||
void *udata, hid_t dxpl_id);
|
||
static herr_t H5O_layout_debug(H5F_t *f, hid_t dxpl_id, const void *_mesg, FILE * stream,
|
||
int indent, int fwidth);
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||
/* This message derives from H5O message class */
|
||
const H5O_msg_class_t H5O_MSG_LAYOUT[1] = {{
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||
H5O_LAYOUT_ID, /*message id number */
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||
"layout", /*message name for debugging */
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||
sizeof(H5O_layout_t), /*native message size */
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||
0, /* messages are sharable? */
|
||
H5O_layout_decode, /*decode message */
|
||
H5O_layout_encode, /*encode message */
|
||
H5O_layout_copy, /*copy the native value */
|
||
H5O_layout_size, /*size of message on disk */
|
||
H5O_layout_reset, /*reset method */
|
||
H5O_layout_free, /*free the struct */
|
||
H5O_layout_delete, /* file delete method */
|
||
NULL, /* link method */
|
||
NULL, /*set share method */
|
||
NULL, /*can share method */
|
||
NULL, /* pre copy native value to file */
|
||
H5O_layout_copy_file, /* copy native value to file */
|
||
NULL, /* post copy native value to file */
|
||
NULL, /* get creation index */
|
||
NULL, /* set creation index */
|
||
H5O_layout_debug /*debug the message */
|
||
}};
|
||
|
||
|
||
/* Declare a free list to manage the H5O_layout_t struct */
|
||
H5FL_DEFINE(H5O_layout_t);
|
||
|
||
|
||
/*-------------------------------------------------------------------------
|
||
* Function: H5O_layout_decode
|
||
*
|
||
* Purpose: Decode an data layout message and return a pointer to a
|
||
* new one created with malloc().
|
||
*
|
||
* Return: Success: Ptr to new message in native order.
|
||
*
|
||
* Failure: NULL
|
||
*
|
||
* Programmer: Robb Matzke
|
||
* Wednesday, October 8, 1997
|
||
*
|
||
*-------------------------------------------------------------------------
|
||
*/
|
||
static void *
|
||
H5O_layout_decode(H5F_t *f, hid_t UNUSED dxpl_id, H5O_t UNUSED *open_oh,
|
||
unsigned UNUSED mesg_flags, unsigned UNUSED *ioflags, const uint8_t *p)
|
||
{
|
||
H5O_layout_t *mesg = NULL;
|
||
unsigned u;
|
||
void *ret_value; /* Return value */
|
||
|
||
FUNC_ENTER_NOAPI_NOINIT(H5O_layout_decode)
|
||
|
||
/* check args */
|
||
HDassert(f);
|
||
HDassert(p);
|
||
|
||
/* decode */
|
||
if(NULL == (mesg = H5FL_CALLOC(H5O_layout_t)))
|
||
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed")
|
||
|
||
mesg->version = *p++;
|
||
if(mesg->version < H5O_LAYOUT_VERSION_1 || mesg->version > H5O_LAYOUT_VERSION_3)
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||
HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, NULL, "bad version number for layout message")
|
||
|
||
if(mesg->version < H5O_LAYOUT_VERSION_3) {
|
||
unsigned ndims; /* Num dimensions in chunk */
|
||
|
||
/* Dimensionality */
|
||
ndims = *p++;
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||
if(ndims > H5O_LAYOUT_NDIMS)
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||
HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, NULL, "dimensionality is too large")
|
||
|
||
/* Layout class */
|
||
mesg->type = (H5D_layout_t)*p++;
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||
assert(H5D_CONTIGUOUS == mesg->type || H5D_CHUNKED == mesg->type || H5D_COMPACT == mesg->type);
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/* Reserved bytes */
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p += 5;
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||
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/* Address */
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if(mesg->type == H5D_CONTIGUOUS) {
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H5F_addr_decode(f, &p, &(mesg->storage.u.contig.addr));
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||
/* Set the layout operations */
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mesg->ops = H5D_LOPS_CONTIG;
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||
} /* end if */
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else if(mesg->type == H5D_CHUNKED) {
|
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H5F_addr_decode(f, &p, &(mesg->storage.u.chunk.idx_addr));
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||
/* Set the layout operations */
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mesg->ops = H5D_LOPS_CHUNK;
|
||
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/* Set the chunk operations */
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||
/* (Only "btree" indexing type currently supported in this version) */
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mesg->storage.u.chunk.idx_type = H5D_CHUNK_BTREE;
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mesg->storage.u.chunk.ops = H5D_COPS_BTREE;
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||
} /* end if */
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||
else {
|
||
/* Sanity check */
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HDassert(mesg->type == H5D_COMPACT);
|
||
|
||
/* Set the layout operations */
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mesg->ops = H5D_LOPS_COMPACT;
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} /* end else */
|
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|
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/* Read the size */
|
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if(mesg->type != H5D_CHUNKED) {
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/* Don't compute size of contiguous storage here, due to possible
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* truncation of the dimension sizes when they were stored in this
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* version of the layout message. Compute the contiguous storage
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* size in the dataset code, where we've got the dataspace
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* information available also. - QAK 5/26/04
|
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*/
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p += ndims * 4; /* Skip over dimension sizes (32-bit quantities) */
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} /* end if */
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else {
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mesg->u.chunk.ndims=ndims;
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for(u = 0; u < ndims; u++)
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UINT32DECODE(p, mesg->u.chunk.dim[u]);
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/* Compute chunk size */
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for(u = 1, mesg->u.chunk.size = mesg->u.chunk.dim[0]; u < ndims; u++)
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mesg->u.chunk.size *= mesg->u.chunk.dim[u];
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} /* end if */
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if(mesg->type == H5D_COMPACT) {
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UINT32DECODE(p, mesg->storage.u.compact.size);
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if(mesg->storage.u.compact.size > 0) {
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if(NULL == (mesg->storage.u.compact.buf = H5MM_malloc(mesg->storage.u.compact.size)))
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HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed for compact data buffer")
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HDmemcpy(mesg->storage.u.compact.buf, p, mesg->storage.u.compact.size);
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p += mesg->storage.u.compact.size;
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} /* end if */
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} /* end if */
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} /* end if */
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else {
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/* Layout class */
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mesg->type = (H5D_layout_t)*p++;
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/* Interpret the rest of the message according to the layout class */
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switch(mesg->type) {
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case H5D_COMPACT:
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UINT16DECODE(p, mesg->storage.u.compact.size);
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if(mesg->storage.u.compact.size > 0) {
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if(NULL == (mesg->storage.u.compact.buf = H5MM_malloc(mesg->storage.u.compact.size)))
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HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed for compact data buffer")
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HDmemcpy(mesg->storage.u.compact.buf, p, mesg->storage.u.compact.size);
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p += mesg->storage.u.compact.size;
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} /* end if */
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/* Set the layout operations */
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mesg->ops = H5D_LOPS_COMPACT;
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break;
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case H5D_CONTIGUOUS:
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H5F_addr_decode(f, &p, &(mesg->storage.u.contig.addr));
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H5F_DECODE_LENGTH(f, p, mesg->storage.u.contig.size);
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/* Set the layout operations */
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mesg->ops = H5D_LOPS_CONTIG;
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break;
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case H5D_CHUNKED:
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/* Dimensionality */
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mesg->u.chunk.ndims = *p++;
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if(mesg->u.chunk.ndims > H5O_LAYOUT_NDIMS)
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HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, NULL, "dimensionality is too large")
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/* B-tree address */
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H5F_addr_decode(f, &p, &(mesg->storage.u.chunk.idx_addr));
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/* Chunk dimensions */
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for(u = 0; u < mesg->u.chunk.ndims; u++)
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UINT32DECODE(p, mesg->u.chunk.dim[u]);
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/* Compute chunk size */
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for(u = 1, mesg->u.chunk.size = mesg->u.chunk.dim[0]; u < mesg->u.chunk.ndims; u++)
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mesg->u.chunk.size *= mesg->u.chunk.dim[u];
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/* Set the chunk operations */
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/* (Only "btree" indexing type supported with v3 of message format) */
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mesg->storage.u.chunk.idx_type = H5D_CHUNK_BTREE;
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mesg->storage.u.chunk.ops = H5D_COPS_BTREE;
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/* Set the layout operations */
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mesg->ops = H5D_LOPS_CHUNK;
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break;
|
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|
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default:
|
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HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, NULL, "Invalid layout class")
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} /* end switch */
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} /* end else */
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/* Set return value */
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ret_value = mesg;
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done:
|
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if(ret_value == NULL)
|
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if(mesg)
|
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mesg = H5FL_FREE(H5O_layout_t, mesg);
|
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FUNC_LEAVE_NOAPI(ret_value)
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} /* end H5O_layout_decode() */
|
||
|
||
|
||
/*-------------------------------------------------------------------------
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||
* Function: H5O_layout_encode
|
||
*
|
||
* Purpose: Encodes a message.
|
||
*
|
||
* Return: Non-negative on success/Negative on failure
|
||
*
|
||
* Programmer: Robb Matzke
|
||
* Wednesday, October 8, 1997
|
||
*
|
||
* Note:
|
||
* Quincey Koziol, 2004-5-21
|
||
* We write out version 3 messages by default now.
|
||
*
|
||
* Modifications:
|
||
* Robb Matzke, 1998-07-20
|
||
* Rearranged the message to add a version number at the beginning.
|
||
*
|
||
* Raymond Lu, 2002-2-26
|
||
* Added version number 2 case depends on if space has been allocated
|
||
* at the moment when layout header message is updated.
|
||
*
|
||
* Quincey Koziol, 2004-5-21
|
||
* Added version number 3 case to straighten out problems with contiguous
|
||
* layout's sizes (was encoding them as 4-byte values when they were
|
||
* really n-byte values (where n usually is 8)) and additionally clean up
|
||
* the information written out.
|
||
*
|
||
*-------------------------------------------------------------------------
|
||
*/
|
||
static herr_t
|
||
H5O_layout_encode(H5F_t *f, hbool_t UNUSED disable_shared, uint8_t *p, const void *_mesg)
|
||
{
|
||
const H5O_layout_t *mesg = (const H5O_layout_t *) _mesg;
|
||
unsigned u;
|
||
herr_t ret_value = SUCCEED; /* Return value */
|
||
|
||
FUNC_ENTER_NOAPI_NOINIT(H5O_layout_encode)
|
||
|
||
/* check args */
|
||
HDassert(f);
|
||
HDassert(mesg);
|
||
HDassert(p);
|
||
|
||
/* Message version */
|
||
*p++ = (uint8_t)H5O_LAYOUT_VERSION_3;
|
||
|
||
/* Layout class */
|
||
*p++ = mesg->type;
|
||
|
||
/* Write out layout class specific information */
|
||
switch(mesg->type) {
|
||
case H5D_COMPACT:
|
||
/* Size of raw data */
|
||
UINT16ENCODE(p, mesg->storage.u.compact.size);
|
||
|
||
/* Raw data */
|
||
if(mesg->storage.u.compact.size > 0) {
|
||
if(mesg->storage.u.compact.buf)
|
||
HDmemcpy(p, mesg->storage.u.compact.buf, mesg->storage.u.compact.size);
|
||
else
|
||
HDmemset(p, 0, mesg->storage.u.compact.size);
|
||
p += mesg->storage.u.compact.size;
|
||
} /* end if */
|
||
break;
|
||
|
||
case H5D_CONTIGUOUS:
|
||
H5F_addr_encode(f, &p, mesg->storage.u.contig.addr);
|
||
H5F_ENCODE_LENGTH(f, p, mesg->storage.u.contig.size);
|
||
break;
|
||
|
||
case H5D_CHUNKED:
|
||
/* Number of dimensions */
|
||
HDassert(mesg->u.chunk.ndims > 0 && mesg->u.chunk.ndims <= H5O_LAYOUT_NDIMS);
|
||
*p++ = (uint8_t)mesg->u.chunk.ndims;
|
||
|
||
/* B-tree address */
|
||
H5F_addr_encode(f, &p, mesg->storage.u.chunk.idx_addr);
|
||
|
||
/* Dimension sizes */
|
||
for(u = 0; u < mesg->u.chunk.ndims; u++)
|
||
UINT32ENCODE(p, mesg->u.chunk.dim[u]);
|
||
break;
|
||
|
||
default:
|
||
HGOTO_ERROR(H5E_OHDR, H5E_CANTENCODE, FAIL, "Invalid layout class")
|
||
} /* end switch */
|
||
|
||
done:
|
||
FUNC_LEAVE_NOAPI(ret_value)
|
||
} /* end H5O_layout_encode() */
|
||
|
||
|
||
/*-------------------------------------------------------------------------
|
||
* Function: H5O_layout_copy
|
||
*
|
||
* Purpose: Copies a message from _MESG to _DEST, allocating _DEST if
|
||
* necessary.
|
||
*
|
||
* Return: Success: Ptr to _DEST
|
||
*
|
||
* Failure: NULL
|
||
*
|
||
* Programmer: Robb Matzke
|
||
* Wednesday, October 8, 1997
|
||
*
|
||
*-------------------------------------------------------------------------
|
||
*/
|
||
static void *
|
||
H5O_layout_copy(const void *_mesg, void *_dest)
|
||
{
|
||
const H5O_layout_t *mesg = (const H5O_layout_t *) _mesg;
|
||
H5O_layout_t *dest = (H5O_layout_t *) _dest;
|
||
void *ret_value; /* Return value */
|
||
|
||
FUNC_ENTER_NOAPI_NOINIT(H5O_layout_copy)
|
||
|
||
/* check args */
|
||
HDassert(mesg);
|
||
|
||
/* Allocate destination message, if necessary */
|
||
if(!dest && NULL == (dest = H5FL_MALLOC(H5O_layout_t)))
|
||
HGOTO_ERROR(H5E_OHDR, H5E_CANTALLOC, NULL, "layout message allocation failed")
|
||
|
||
/* copy */
|
||
*dest = *mesg;
|
||
|
||
/* Deep copy the buffer for compact datasets also */
|
||
if(mesg->type == H5D_COMPACT && mesg->storage.u.compact.size > 0) {
|
||
/* Allocate memory for the raw data */
|
||
if(NULL == (dest->storage.u.compact.buf = H5MM_malloc(dest->storage.u.compact.size)))
|
||
HGOTO_ERROR(H5E_OHDR, H5E_NOSPACE, NULL, "unable to allocate memory for compact dataset")
|
||
|
||
/* Copy over the raw data */
|
||
HDmemcpy(dest->storage.u.compact.buf, mesg->storage.u.compact.buf, dest->storage.u.compact.size);
|
||
} /* end if */
|
||
|
||
/* Reset the pointer of the chunked storage index but not the address */
|
||
if(dest->type == H5D_CHUNKED && dest->storage.u.chunk.ops)
|
||
H5D_chunk_idx_reset(&dest->storage.u.chunk, FALSE);
|
||
|
||
/* Set return value */
|
||
ret_value = dest;
|
||
|
||
done:
|
||
if(ret_value == NULL)
|
||
if(NULL == _dest)
|
||
dest = H5FL_FREE(H5O_layout_t, dest);
|
||
|
||
FUNC_LEAVE_NOAPI(ret_value)
|
||
} /* end H5O_layout_copy() */
|
||
|
||
|
||
/*-------------------------------------------------------------------------
|
||
* Function: H5O_layout_size
|
||
*
|
||
* Purpose: Returns the size of the raw message in bytes. If it's
|
||
* compact dataset, the data part is also included.
|
||
* This function doesn't take into account message alignment.
|
||
*
|
||
* Return: Success: Message data size in bytes
|
||
*
|
||
* Failure: 0
|
||
*
|
||
* Programmer: Robb Matzke
|
||
* Wednesday, October 8, 1997
|
||
*
|
||
*-------------------------------------------------------------------------
|
||
*/
|
||
static size_t
|
||
H5O_layout_size(const H5F_t *f, hbool_t UNUSED disable_shared, const void *_mesg)
|
||
{
|
||
const H5O_layout_t *mesg = (const H5O_layout_t *) _mesg;
|
||
size_t ret_value;
|
||
|
||
FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5O_layout_size)
|
||
|
||
/* check args */
|
||
HDassert(f);
|
||
HDassert(mesg);
|
||
|
||
/* Compute serialized size */
|
||
/* (including possibly compact data) */
|
||
ret_value = H5D_layout_meta_size(f, mesg, TRUE);
|
||
|
||
FUNC_LEAVE_NOAPI(ret_value)
|
||
} /* end H5O_layout_size() */
|
||
|
||
|
||
/*-------------------------------------------------------------------------
|
||
* Function: H5O_layout_reset
|
||
*
|
||
* Purpose: Frees resources within a data type message, but doesn't free
|
||
* the message itself.
|
||
*
|
||
* Return: Non-negative on success/Negative on failure
|
||
*
|
||
* Programmer: Quincey Koziol
|
||
* Friday, September 13, 2002
|
||
*
|
||
*-------------------------------------------------------------------------
|
||
*/
|
||
static herr_t
|
||
H5O_layout_reset(void *_mesg)
|
||
{
|
||
H5O_layout_t *mesg = (H5O_layout_t *)_mesg;
|
||
|
||
FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5O_layout_reset)
|
||
|
||
if(mesg) {
|
||
/* Free the compact storage buffer */
|
||
if(H5D_COMPACT == mesg->type)
|
||
mesg->storage.u.compact.buf = H5MM_xfree(mesg->storage.u.compact.buf);
|
||
|
||
/* Reset the message */
|
||
mesg->type = H5D_CONTIGUOUS;
|
||
} /* end if */
|
||
|
||
FUNC_LEAVE_NOAPI(SUCCEED)
|
||
} /* end H5O_layout_reset() */
|
||
|
||
|
||
/*-------------------------------------------------------------------------
|
||
* Function: H5O_layout_free
|
||
*
|
||
* Purpose: Free's the message
|
||
*
|
||
* Return: Non-negative on success/Negative on failure
|
||
*
|
||
* Programmer: Quincey Koziol
|
||
* Saturday, March 11, 2000
|
||
*
|
||
*-------------------------------------------------------------------------
|
||
*/
|
||
static herr_t
|
||
H5O_layout_free(void *_mesg)
|
||
{
|
||
H5O_layout_t *mesg = (H5O_layout_t *) _mesg;
|
||
herr_t ret_value = SUCCEED; /* Return value */
|
||
|
||
FUNC_ENTER_NOAPI_NOINIT(H5O_layout_free)
|
||
|
||
HDassert(mesg);
|
||
|
||
/* Free resources within the message */
|
||
if(H5O_layout_reset(mesg) < 0)
|
||
HGOTO_ERROR(H5E_OHDR, H5E_CANTFREE, FAIL, "unable to free message resources")
|
||
|
||
mesg = H5FL_FREE(H5O_layout_t, mesg);
|
||
|
||
done:
|
||
FUNC_LEAVE_NOAPI(ret_value)
|
||
} /* end H5O_layout_free() */
|
||
|
||
|
||
/*-------------------------------------------------------------------------
|
||
* Function: H5O_layout_delete
|
||
*
|
||
* Purpose: Free file space referenced by message
|
||
*
|
||
* Return: Non-negative on success/Negative on failure
|
||
*
|
||
* Programmer: Quincey Koziol
|
||
* Wednesday, March 19, 2003
|
||
*
|
||
*-------------------------------------------------------------------------
|
||
*/
|
||
static herr_t
|
||
H5O_layout_delete(H5F_t *f, hid_t dxpl_id, H5O_t *open_oh, void *_mesg)
|
||
{
|
||
H5O_layout_t *mesg = (H5O_layout_t *) _mesg;
|
||
herr_t ret_value = SUCCEED; /* Return value */
|
||
|
||
FUNC_ENTER_NOAPI_NOINIT(H5O_layout_delete)
|
||
|
||
/* check args */
|
||
HDassert(f);
|
||
HDassert(open_oh);
|
||
HDassert(mesg);
|
||
|
||
/* Perform different actions, depending on the type of storage */
|
||
switch(mesg->type) {
|
||
case H5D_COMPACT: /* Compact data storage */
|
||
/* Nothing required */
|
||
break;
|
||
|
||
case H5D_CONTIGUOUS: /* Contiguous block on disk */
|
||
/* Free the file space for the raw data */
|
||
if(H5D_contig_delete(f, dxpl_id, &mesg->storage) < 0)
|
||
HGOTO_ERROR(H5E_OHDR, H5E_CANTFREE, FAIL, "unable to free raw data")
|
||
break;
|
||
|
||
case H5D_CHUNKED: /* Chunked blocks on disk */
|
||
/* Free the file space for the index & chunk raw data */
|
||
if(H5D_chunk_delete(f, dxpl_id, open_oh, &mesg->storage) < 0)
|
||
HGOTO_ERROR(H5E_OHDR, H5E_CANTFREE, FAIL, "unable to free raw data")
|
||
break;
|
||
|
||
default:
|
||
HGOTO_ERROR(H5E_OHDR, H5E_BADTYPE, FAIL, "not valid storage type")
|
||
} /* end switch */
|
||
|
||
done:
|
||
FUNC_LEAVE_NOAPI(ret_value)
|
||
} /* end H5O_layout_delete() */
|
||
|
||
|
||
/*-------------------------------------------------------------------------
|
||
* Function: H5O_layout_copy_file
|
||
*
|
||
* Purpose: Copies a message from _MESG to _DEST in file
|
||
*
|
||
* Return: Success: Ptr to _DEST
|
||
*
|
||
* Failure: NULL
|
||
*
|
||
* Programmer: Peter Cao
|
||
* July 23, 2005
|
||
*
|
||
*-------------------------------------------------------------------------
|
||
*/
|
||
static void *
|
||
H5O_layout_copy_file(H5F_t *file_src, void *mesg_src, H5F_t *file_dst,
|
||
hbool_t UNUSED *recompute_size, H5O_copy_t *cpy_info, void *_udata,
|
||
hid_t dxpl_id)
|
||
{
|
||
H5D_copy_file_ud_t *udata = (H5D_copy_file_ud_t *)_udata; /* Dataset copying user data */
|
||
H5O_layout_t *layout_src = (H5O_layout_t *) mesg_src;
|
||
H5O_layout_t *layout_dst = NULL;
|
||
hbool_t copied = FALSE; /* Whether the data was copied */
|
||
void *ret_value; /* Return value */
|
||
|
||
FUNC_ENTER_NOAPI_NOINIT(H5O_layout_copy_file)
|
||
|
||
/* check args */
|
||
HDassert(file_src);
|
||
HDassert(layout_src);
|
||
HDassert(file_dst);
|
||
|
||
/* Allocate space for the destination layout */
|
||
if(NULL == (layout_dst = H5FL_MALLOC(H5O_layout_t)))
|
||
HGOTO_ERROR(H5E_OHDR, H5E_CANTALLOC, NULL, "memory allocation failed")
|
||
|
||
/* Copy the "top level" information */
|
||
*layout_dst = *layout_src;
|
||
|
||
/* Copy the layout type specific information */
|
||
switch(layout_src->type) {
|
||
case H5D_COMPACT:
|
||
if(layout_src->storage.u.compact.buf) {
|
||
/* copy compact raw data */
|
||
if(H5D_compact_copy(file_src, &layout_src->storage.u.compact, file_dst, &layout_dst->storage.u.compact, udata->src_dtype, cpy_info, dxpl_id) < 0)
|
||
HGOTO_ERROR(H5E_OHDR, H5E_CANTCOPY, NULL, "unable to copy chunked storage")
|
||
copied = TRUE;
|
||
} /* end if */
|
||
break;
|
||
|
||
case H5D_CONTIGUOUS:
|
||
/* Compute the size of the contiguous storage for versions of the
|
||
* layout message less than version 3 because versions 1 & 2 would
|
||
* truncate the dimension sizes to 32-bits of information. - QAK 5/26/04
|
||
*/
|
||
if(layout_src->version < H5O_LAYOUT_VERSION_3)
|
||
layout_dst->storage.u.contig.size = H5S_extent_nelem(udata->src_space_extent) *
|
||
H5T_get_size(udata->src_dtype);
|
||
|
||
if(H5D_contig_is_space_alloc(&layout_src->storage)) {
|
||
/* copy contiguous raw data */
|
||
if(H5D_contig_copy(file_src, &layout_src->storage.u.contig, file_dst, &layout_dst->storage.u.contig, udata->src_dtype, cpy_info, dxpl_id) < 0)
|
||
HGOTO_ERROR(H5E_OHDR, H5E_CANTCOPY, NULL, "unable to copy contiguous storage")
|
||
copied = TRUE;
|
||
} /* end if */
|
||
break;
|
||
|
||
case H5D_CHUNKED:
|
||
if(H5D_chunk_is_space_alloc(&layout_src->storage)) {
|
||
/* Create chunked layout */
|
||
if(H5D_chunk_copy(file_src, &layout_src->storage.u.chunk, &layout_src->u.chunk, file_dst, &layout_dst->storage.u.chunk, udata->src_space_extent, udata->src_dtype, udata->common.src_pline, cpy_info, dxpl_id) < 0)
|
||
HGOTO_ERROR(H5E_OHDR, H5E_CANTCOPY, NULL, "unable to copy chunked storage")
|
||
copied = TRUE;
|
||
} /* end if */
|
||
break;
|
||
|
||
default:
|
||
HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, NULL, "Invalid layout class")
|
||
} /* end switch */
|
||
|
||
/* Check if copy routine was invoked (which frees the source datatype) */
|
||
if(copied)
|
||
udata->src_dtype = NULL;
|
||
|
||
/* Set return value */
|
||
ret_value = layout_dst;
|
||
|
||
done:
|
||
if(!ret_value)
|
||
if(layout_dst)
|
||
layout_dst = H5FL_FREE(H5O_layout_t, layout_dst);
|
||
|
||
FUNC_LEAVE_NOAPI(ret_value)
|
||
} /* end H5O_layout_copy_file() */
|
||
|
||
|
||
/*-------------------------------------------------------------------------
|
||
* Function: H5O_layout_debug
|
||
*
|
||
* Purpose: Prints debugging info for a message.
|
||
*
|
||
* Return: Non-negative on success/Negative on failure
|
||
*
|
||
* Programmer: Robb Matzke
|
||
* Wednesday, October 8, 1997
|
||
*
|
||
*-------------------------------------------------------------------------
|
||
*/
|
||
static herr_t
|
||
H5O_layout_debug(H5F_t UNUSED *f, hid_t UNUSED dxpl_id, const void *_mesg,
|
||
FILE * stream, int indent, int fwidth)
|
||
{
|
||
const H5O_layout_t *mesg = (const H5O_layout_t *) _mesg;
|
||
unsigned u;
|
||
|
||
FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5O_layout_debug)
|
||
|
||
/* check args */
|
||
HDassert(f);
|
||
HDassert(mesg);
|
||
HDassert(stream);
|
||
HDassert(indent >= 0);
|
||
HDassert(fwidth >= 0);
|
||
|
||
HDfprintf(stream, "%*s%-*s %u\n", indent, "", fwidth,
|
||
"Version:", mesg->version);
|
||
switch(mesg->type) {
|
||
case H5D_CHUNKED:
|
||
HDfprintf(stream, "%*s%-*s %s\n", indent, "", fwidth,
|
||
"Type:", "Chunked");
|
||
|
||
/* Chunk # of dims & size */
|
||
HDfprintf(stream, "%*s%-*s %lu\n", indent, "", fwidth,
|
||
"Number of dimensions:",
|
||
(unsigned long)(mesg->u.chunk.ndims));
|
||
HDfprintf(stream, "%*s%-*s {", indent, "", fwidth, "Size:");
|
||
for(u = 0; u < mesg->u.chunk.ndims; u++)
|
||
HDfprintf(stream, "%s%lu", u ? ", " : "", (unsigned long)(mesg->u.chunk.dim[u]));
|
||
HDfprintf(stream, "}\n");
|
||
|
||
/* Index information */
|
||
switch(mesg->storage.u.chunk.idx_type) {
|
||
case H5D_CHUNK_BTREE:
|
||
HDfprintf(stream, "%*s%-*s %s\n", indent, "", fwidth,
|
||
"Index Type:", "v1 B-tree");
|
||
HDfprintf(stream, "%*s%-*s %a\n", indent, "", fwidth,
|
||
"B-tree address:", mesg->storage.u.chunk.idx_addr);
|
||
break;
|
||
|
||
default:
|
||
HDfprintf(stream, "%*s%-*s %s (%u)\n", indent, "", fwidth,
|
||
"Index Type:", "Unknown", (unsigned)mesg->storage.u.chunk.idx_type);
|
||
break;
|
||
} /* end switch */
|
||
break;
|
||
|
||
case H5D_CONTIGUOUS:
|
||
HDfprintf(stream, "%*s%-*s %s\n", indent, "", fwidth,
|
||
"Type:", "Contiguous");
|
||
HDfprintf(stream, "%*s%-*s %a\n", indent, "", fwidth,
|
||
"Data address:", mesg->storage.u.contig.addr);
|
||
HDfprintf(stream, "%*s%-*s %Hu\n", indent, "", fwidth,
|
||
"Data Size:", mesg->storage.u.contig.size);
|
||
break;
|
||
|
||
case H5D_COMPACT:
|
||
HDfprintf(stream, "%*s%-*s %s\n", indent, "", fwidth,
|
||
"Type:", "Compact");
|
||
HDfprintf(stream, "%*s%-*s %Zu\n", indent, "", fwidth,
|
||
"Data Size:", mesg->storage.u.compact.size);
|
||
break;
|
||
|
||
default:
|
||
HDfprintf(stream, "%*s%-*s %s (%u)\n", indent, "", fwidth,
|
||
"Type:", "Unknown", (unsigned)mesg->type);
|
||
break;
|
||
} /* end switch */
|
||
|
||
FUNC_LEAVE_NOAPI(SUCCEED)
|
||
} /* end H5O_layout_debug() */
|
||
|