* Brings CMake updates from develop * Brings reduction in pedantic casts from develop * Purges UFAIL from the library (#637) * Committing clang-format changes * Purges UFAIL from the library * H5HL_insert change requested in PR Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Removes gratuitous (double)x.yF casts (#632) * Committing clang-format changes * Removes gratuitous (double)x.yF casts * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Committing clang-format changes * Cleans up a const warning left over from previous constification (#633) * Committing clang-format changes * Adds consts to a few global variables * Cleans up a const warning left over from previous constification Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Formatted source * Bring over some VOL registration changes * VOL cleanup * H5VL_request_status_t substitutions * H5F.c cleanup * Minor API tweaks from develop * Moves H5G package init/teardown to H5Gint.c * H5G cleanup * H5M cleanup * H5SM cleanup * H5T cleanup * H5R cleanup * H5Lpublic.h cleanup * H5L cleanup * H5O cleanup * H5A, H5CS, and H5AC cleanup * Moved H5A init/teardown code to H5Aint.c * Moves H5D I/O functions to H5D.c * H5D cleanup * Misc minor cleanup * H5P close cleanup * H5Tpublic.h cleanup * Fixes err_compat test * H5PLpublic.h cleanup * Updates H5Ppublic.h * H5Fpublic.h updates * H5A.c cleanup * Brings over H5Aexists and related changes * Brings CMake shell testing changes from develop * Close callback changes * H5R and H5Tcommit normalization * err_compat test works now * H5O tweaks * Updates VOL registration code * Brings over H5VL_create_object * H5Tconv.c reformatting * H5T.c tweaks * Brings datatype and reference updates from develop * Brings VOL plugin loading changes from develop * Brings event sets from develop * Brings async functions over * Tools changes * Brings over many tools changes from develop * Brings VOL flags from develop * Fixes h5dump double/float tests * Updates h5repack tests * Brings h5diff test changes from develop * Last h5dump changes * Brings test changes from develop * Committing clang-format changes * Tidied h5_testing() * Brings chunk iteration code + misc from develop * Updates vds test * Enables external link parallel test * Brings updated property lists from develop * H5G changes from develop * H5MF cleanup * Brings vfd_swmr test back into CMake * Updates threadsafe test * Updates plist test * Brings recent changes from develop * Require a C++11 compiler to build the C++ wrappers (#693) * Committing clang-format changes * Requires a C++11 compiler to build the C++ wrappers Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Fix H5FD_mpio_Debug="rw" can report MPI_count instead of bytes (#699) * Removes pre-C99 build and header cruft (#700) * Assumes ANSI C headers exist * Assumes stdbool.h, stdint.h, and inttypes.h are present * Assumes the C++ compiler can handle stdint.h * Removes all work-arounds for missing functionality, especially stdbool.h Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Updates release documents * Brings parallel changes from develop * Adds a VFD/parallel check program for the VFD SWMR shell test * Updates MANIFEST * Disable building VFD SWMR acceptance tests on CMake * Removes err.h from genall5.c * Partial cleanup of H5Cpkg.h * Fixes printf specifiers in H5Cdbg.c * Java and fortran cmake changes (#694) * OESS-98 convert plugin option to FetchContent, add tests * Fixes for pkcfg files because of plugin option * OESS-98 fix tools test for plugins * Keep doxygen comments under 100 chars long - format hint * Whitespace * HDFFV-11144 - Reclassify CMake messages * HDFFV-11099/11100 added help text * Reworked switch statement to compare string instead * Fix typo * Update CDash mode * Correct name of threadsafe * Correct option name * Undo accidental commit * Note LLVM 10 to 11 format default changes * Update format plugin * Undo clang-format version 11 changes * One more correction * Update supported platforms * Revert whitespace changes * Correct whitespace * Changes from PR#3 * HDFFV-11213 added option to control gcc10 warnings diagnostics * HDFFV-11212 Use the new references correctly in JNI utility and tests * format source * Fix typo * Add new test file * HDFFV-11212 - update test and remove unused arg * Minor non-space formatting changes * Use H5I_INVALID_ID instead of "-1" * source formatting * add missing testfile, update jni function * Undo commit of debug code * remove mislocated file * Fix h5repack test for handling of fapls and id close * Update h5diff test files usage text * HDFFV-11212 add new ref tests for JNI export dataset * src format update * Remove blank line typo * src format typo * long double requires %Lg * Another long double foramt specifer S.B. %Lg * issue with t128bit test * Windows issue with h5dump and type. * Fix review issues * refactor function nesting and fix error checks * format fixes * Remove untested functions and javadoc quiet comments * Restore TRY block. * Change string append errors to memory exception * revert to H5_JNI_FATAL_ERROR - support functions need work * Add assertion error for h5util functions * remove duplicate function * format fix * Revert HD function error handling * Update copyright comments * GH #386 java folder copyright corrections * Whitespace * GH #359 implement and fix tools 1.6 API usage * remove excessive comments * Flip inits to correct ifdef section * rework ifdef to be simpler * format issue * Reformat ifdef inits * remove static attribute * format compliance * Update names * Revert because logic relies on float not being int * Changes noticed from creating merge of #412 * Double underscore change * Correct compiler version variable used * Remove header guard underscores * Whitespace cleanup * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * correct window os name * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * HDFFV-11113 long double in tools * HDFFV-11113 add note * Disable long double tests for now * HDFFV-11228 remove arbitrary CMake warning groups. * Make each flag a string * Some Javadoc warning fixes * Updated javadoc fixes * # WARNING: head commit changed in the meantime HDFFV-11229 Fix long double usage in tools and java Changed h5dump and h5ls to just print 128-bit for long double type. Added test and file for dataset and attributes with all three float types. * Committing clang-format changes * HDFFV-11229 Add release note * HDFFV-11229 windows testfile needed * fix typo * Remove non supported message text * HDFFV-11229 - change ldouble test to check both native and general * HDFFV-11229 add second file compare * HDFFV-11229 fix reference file * HDFFV-11229 autotools check two refs * HDFFV-11229 revert back to removal of NATIVE_LDOUBLE in tools output * Committing clang-format changes * Update release note * Update attribute type of ref file * Change source of ninja for macs * try port instead of brew * Recommended is to use brew. * Undo non long double changes * remove unneeded file * Fix perl and doxygen CMake code * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument * Add stamp files to BYPRODUCTS * Only one copy of file exists * Fix custom cmmand depends targets * Fix fortran custom command DEPENDS * Add LD_LIBRARY_PATH to tests * Add custom target for DEPENDS * Add h5detect conditionaly to generated target DEPENDS * Correct DEPENDS targets * Parallel builds need the mpi compiler for pkgconfig scripts. * install only if MPI build * Fortran target depends * Remove incorrect source attribute * doxygen adjustments * doxygen build updates * Correct version * Correct function version - function has been merged to 1.12 * Correct version string for map functions * Cleanup warnings for tools debug builds * TRILAB-227 - fix indexing for h5diff selections * Correct location of pos to index function call * TRILAB-227 Enable test * Quote subset args * Use MATCHES because of AppleClang * if blocks needed for build modes * Update list of DT platforms * VS2019 correctly displays float values * revert VS2019 change * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * Java reference functions updated enabled fortran in cmake gcc action yaml file java reference test changed to correctly test refs jni reference functions that create ids changed to use jni id logging * Correct BYPRODUCTS argument * Correct more genereated files BYPRODUCTS * BYPRODUCTS must have unique locations * Fix typo Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Removes alternative function enter/leave macro scheme (#678) * Committing clang-format changes * Converted BEGIN_FUNC, etc. macros to FUNC_ENTER * Rips out the BEGIN_FUNC, etc. macros * Removes 'end if', etc. comments from H5HL package * Committing clang-format changes * Fixes an H5EA iterate issue * Fixes an issue in the H5FA iterator code * Further cleanup in bin/trace after macro removal * Iterator changes in H5EA and H5FA Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Split H5L.c internal code to H5Lint.c (#691) * Committing clang-format changes * Splits internal parts of H5L.c to H5Lint.c Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Clean up type size checks in configure.ac (#702) * Committing clang-format changes * C++ warning and build fixes (#707) * Committing clang-format changes * C++ build and warning updates * Fixes all warnings on C++ (with gcc 9.3) * Updates CMake and Autotools C++ builds * Undo warning clobber Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Removes some DEC Alpha cruft from H5detect and H5private.h (#708) * Cleans up hsize_t and haddr_t size guessing (#709) * Cleans up definitions of haddr_t and hsize_t + cruft removal * Formatted source * Updates PGI C/C++ configurations (#715) * Updates PGI C/C++ configurations Tweaks some settings and configures pgc++ to use C++11 * Updated copyright information * Adds an Intel C++ configuration file (#716) * Adds an Intel C++ configuration file * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Updates bin/trace script to correctly wrap H5TRACE macros near clang-format column limit (#719) * Removes clang-format comments from H5O.c call * Fixes bin/trace to correctly wrap lines near the clang-format limit * Removed unused variable from bin/trace * Fixes issue with ccmake that prevents building Fortran (#723) ccmake runs iteratively, and the check_fortran_source_runs macros were clobbering a single output file that did not get updated on further configure iterations Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
776 lines
26 KiB
C++
776 lines
26 KiB
C++
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
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* Copyright by The HDF Group. *
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* All rights reserved. *
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* *
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* This file is part of HDF5. The full HDF5 copyright notice, including *
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* terms governing use, modification, and redistribution, is contained in *
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* the COPYING file, which can be found at the root of the source code *
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* distribution tree, or in https://www.hdfgroup.org/licenses. *
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* If you do not have access to either file, you may request a copy from *
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* help@hdfgroup.org. *
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* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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/*****************************************************************************
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FILE
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tlinks.cpp - HDF5 C++ testing functionalities associated with the
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C link interface (H5L)
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***************************************************************************/
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#include <iostream>
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using std::cerr;
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using std::endl;
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#include <string>
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#include "H5Cpp.h" // C++ API header file
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using namespace H5;
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#include "h5test.h"
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#include "h5cpputil.h" // C++ utilility header file
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#define NAME_BUF_SIZE 1024
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#define H5L_DIM1 100
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#define H5L_DIM2 100
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// Object visit structs
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typedef struct {
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const char *path; /* Path to object */
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H5O_type_t type; /* Type of object */
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} obj_visit_t;
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// User data for callback function
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typedef struct {
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unsigned idx; /* Index in object visit structure */
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const obj_visit_t *info; /* Pointer to the object visit structure to use */
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} ovisit_ud_t;
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static const char *FILENAME[] = {"link0", "link1.h5", "link2.h5", "visit", NULL};
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/*-------------------------------------------------------------------------
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* Function: test_basic_links
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*
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* Purpose Test building a file with assorted links.
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*
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* Return Success: 0
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* Failure: -1
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*
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* October 16, 2009
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*-------------------------------------------------------------------------
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*/
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static void
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test_basic_links(hid_t fapl_id, hbool_t new_format)
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{
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hsize_t size[1] = {1};
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char filename[NAME_BUF_SIZE];
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// Use the file access template id to create a file access prop. list.
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FileAccPropList fapl(fapl_id);
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try {
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if (new_format)
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SUBTEST("Link creation (w/new group format)")
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else
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SUBTEST("Link creation")
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h5_fixname(FILENAME[0], fapl_id, filename, sizeof filename);
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H5File file(filename, H5F_ACC_TRUNC, FileCreatPropList::DEFAULT, fapl);
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// Create simple dataspace
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DataSpace scalar(1, size, size);
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// Create a group then close it by letting the object go out of scope
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{
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Group group(file.createGroup("grp1", 0));
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}
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// Create a dataset then close it by letting the object go out of scope
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{
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DataSet dset1(file.createDataSet("dset1", PredType::NATIVE_INT, scalar));
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}
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hid_t file_id = file.getId();
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// Because these are not implemented in the C++ API yet, they are
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// used so CommonFG::getLinkval can be tested.
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// Create a hard link
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if (H5Lcreate_hard(file_id, "dset1", H5L_SAME_LOC, "grp1/hard1", H5P_DEFAULT, H5P_DEFAULT) < 0)
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throw Exception("test_basic_links", "H5Lcreate_hard failed");
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// Create a symbolic link
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if (H5Lcreate_soft("/dset1", file_id, "grp1/soft", H5P_DEFAULT, H5P_DEFAULT) < 0)
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throw Exception("test_basic_links", "H5Lcreate_soft failed");
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// Create a symbolic link to something that doesn't exist
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if (H5Lcreate_soft("foobar", file_id, "grp1/dangle", H5P_DEFAULT, H5P_DEFAULT) < 0)
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throw Exception("test_basic_links", "H5Lcreate_soft failed");
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// Create a recursive symbolic link
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if (H5Lcreate_soft("/grp1/recursive", file_id, "/grp1/recursive", H5P_DEFAULT, H5P_DEFAULT) < 0)
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throw Exception("test_basic_links", "H5Lcreate_soft failed");
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// Verify link values before closing the file
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H5std_string softlink_val = file.getLinkval("grp1/soft");
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verify_val(softlink_val, "/dset1", "H5File::getLinkval grp1/soft", __LINE__, __FILE__);
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H5std_string dngllink_val = file.getLinkval("grp1/dangle");
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verify_val(dngllink_val, "foobar", "H5File::getLinkval grp1/dangle", __LINE__, __FILE__);
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H5std_string reclink_val = file.getLinkval("grp1/recursive");
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verify_val(reclink_val, "/grp1/recursive", "H5File::getLinkval grp1/recursive", __LINE__, __FILE__);
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} // end of try block
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catch (Exception &E) {
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issue_fail_msg("test_basic_links()", __LINE__, __FILE__, E.getCDetailMsg());
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}
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// Open the file and check on the links in it
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try {
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// Open the file above
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H5File file(filename, H5F_ACC_RDWR, FileCreatPropList::DEFAULT, fapl);
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// Verify link existence
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if (file.nameExists("dset1", LinkAccPropList::DEFAULT) != TRUE)
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throw InvalidActionException("H5File::nameExists", "dset1 doesn't exist");
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if (file.nameExists("grp1/soft", LinkAccPropList::DEFAULT) != TRUE)
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throw InvalidActionException("H5File::nameExists", "grp1/soft doesn't exist");
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// Deprecated
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if (file.exists("dset1", LinkAccPropList::DEFAULT) != TRUE)
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throw InvalidActionException("H5File::exists", "dset1 doesn't exist");
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if (file.exists("grp1/soft", LinkAccPropList::DEFAULT) != TRUE)
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throw InvalidActionException("H5File::exists", "grp1/soft doesn't exist");
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// Verify link values
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H5std_string softlink_val = file.getLinkval("grp1/soft");
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verify_val(softlink_val, "/dset1", "H5File::getLinkval grp1/soft", __LINE__, __FILE__);
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H5std_string reclink_val = file.getLinkval("grp1/recursive");
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verify_val(reclink_val, "/grp1/recursive", "H5File::getLinkval grp1/recursive", __LINE__, __FILE__);
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PASSED();
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} // end of try block
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catch (Exception &E) {
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issue_fail_msg("test_basic_links()", __LINE__, __FILE__, E.getCDetailMsg());
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}
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} // test_basic_links
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/*-------------------------------------------------------------------------
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* Function: test_lcpl
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*
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* Purpose: Tests link creation property lists, specifically, the
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* character encoding property.
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*
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* Return: Success: 0
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* Failure: number of errors
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* March, 2018
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*-------------------------------------------------------------------------
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*/
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const H5std_string GROUP1NAME("First_group");
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const H5std_string GROUP2NAME("Second_group");
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static void
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test_lcpl(hid_t fapl_id, hbool_t new_format)
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{
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H5L_info2_t linfo;
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char filename[1024];
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hsize_t dims[2];
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if (new_format)
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SUBTEST("Link creation property lists (w/new group format)")
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else
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SUBTEST("Link creation property lists")
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try {
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FileAccPropList fapl(fapl_id);
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// Create a new file.
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h5_fixname(FILENAME[0], fapl_id, filename, sizeof filename);
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H5File file(filename, H5F_ACC_TRUNC, FileCreatPropList::DEFAULT, fapl);
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// Create and link a group with the default LCPL.
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Group grp_1(file.createGroup(GROUP1NAME));
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grp_1.close();
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// Check that its character encoding is the default.
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linfo = file.getLinkInfo(GROUP1NAME);
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if (linfo.cset != H5T_CSET_ASCII)
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throw InvalidActionException("H5Lget_info", "Character encoding is not default");
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// Create and commit a datatype with the default LCPL.
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IntType dtype(PredType::NATIVE_INT);
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dtype.commit(file, "/type");
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dtype.close();
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// Check that its character encoding is the default.
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linfo = file.getLinkInfo("/type");
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verify_val(static_cast<long>(linfo.cset), static_cast<long>(H5T_CSET_ASCII),
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"Character encoding is not default", __LINE__, __FILE__);
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// Create a simple dataspace.
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dims[0] = H5L_DIM1;
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dims[1] = H5L_DIM2;
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DataSpace dspace(2, dims);
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// Create a dataset using the default LCPL.
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DataSet dset(file.createDataSet("/dataset", PredType::NATIVE_INT, dspace));
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dset.close();
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// Check that its character encoding is the default.
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linfo = file.getLinkInfo("/dataset");
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verify_val(static_cast<long>(linfo.cset), static_cast<long>(H5T_CSET_ASCII),
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"Character encoding is not default", __LINE__, __FILE__);
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// Create a link creation property list with the UTF-8 character encoding.
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LinkCreatPropList lcpl;
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lcpl.setCharEncoding(H5T_CSET_UTF8);
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// Create and link a group with the new LCPL.
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Group grp_2(file.createGroup(GROUP2NAME, lcpl));
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grp_2.close();
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// Check that its character encoding is UTF-8.
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linfo = file.getLinkInfo(GROUP2NAME);
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verify_val(static_cast<long>(linfo.cset), static_cast<long>(H5T_CSET_UTF8),
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"Character encoding is not UTF-8", __LINE__, __FILE__);
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PASSED();
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} // end of try block
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catch (Exception &E) {
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issue_fail_msg("test_lcpl()", __LINE__, __FILE__, E.getCDetailMsg());
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}
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} // end test_lcpl()
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/*-------------------------------------------------------------------------
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* Function: test_move
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*
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* Purpose: Tests wrappers of H5Lmove()
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*
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* Return: Success: 0
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* Failure: number of errors
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* March, 2018
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*-------------------------------------------------------------------------
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*/
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static void
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test_move(hid_t fapl_id, hbool_t new_format)
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{
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char filename[1024];
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if (new_format)
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SUBTEST("Group::moveLink (w/new group format)")
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else
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SUBTEST("Group::moveLink")
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try {
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FileAccPropList fapl(fapl_id);
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// Create two new files
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h5_fixname(FILENAME[0], fapl_id, filename, sizeof filename);
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H5File file_a(filename, H5F_ACC_TRUNC, FileCreatPropList::DEFAULT, fapl);
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h5_fixname(FILENAME[1], fapl_id, filename, sizeof filename);
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H5File file_b(filename, H5F_ACC_TRUNC, FileCreatPropList::DEFAULT, fapl);
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// Create groups in first file
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Group grp_1(file_a.createGroup(GROUP1NAME));
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Group grp_2(file_a.createGroup(GROUP2NAME));
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Group grp_move(grp_1.createGroup("group_move"));
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// Create hard and soft links
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grp_1.link(H5L_TYPE_HARD, "group_move", "hard");
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grp_2.link(H5L_TYPE_SOFT, "/First_group/group_copy", "soft");
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// Move a group across files, should fail
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try {
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grp_1.moveLink("group_move", file_b, "group_new_name");
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// Should throw an exception but didn't
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H5_FAILED();
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cerr << " Group group_move should not be moved across files" << endl;
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}
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catch (Exception &E) {
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// expected
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}
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// Move a soft link across files, should succeed
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grp_2.moveLink("soft", file_b, "soft_new_name");
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if (file_b.exists("soft_new_name") != TRUE)
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throw InvalidActionException("H5File::exists", "grp1/soft doesn't exist");
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// Move a group across groups in the same file while renaming it
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grp_1.moveLink("group_move", grp_2, "group_new_name");
|
|
|
|
// Open the group just moved to the new location. */
|
|
Group moved_grp = grp_2.openGroup("group_new_name");
|
|
moved_grp.close();
|
|
|
|
// Verify that the group is no longer in the original location
|
|
try {
|
|
moved_grp = grp_1.openGroup("group_move");
|
|
|
|
// Should throw an exception but didn't
|
|
H5_FAILED();
|
|
cerr << " Group group_move should not be in original location" << endl;
|
|
}
|
|
catch (Exception &E) {
|
|
// expected
|
|
}
|
|
|
|
// Use H5Lmove to rename a group without moving it
|
|
H5std_string new_name("group_new_name");
|
|
H5std_string newer_name("group_newer_name");
|
|
grp_2.moveLink(new_name, newer_name);
|
|
|
|
// Open the group
|
|
moved_grp = grp_2.openGroup("group_newer_name");
|
|
moved_grp.close();
|
|
|
|
// Use H5Lmove to move a group without renaming it
|
|
grp_2.moveLink(newer_name, grp_1, newer_name);
|
|
|
|
// Open the group
|
|
moved_grp = grp_1.openGroup("group_newer_name");
|
|
moved_grp.close();
|
|
|
|
// Move the group while giving long paths
|
|
file_a.moveLink("/First_group/group_newer_name", grp_2, "/Second_group/group_newest_name");
|
|
|
|
// Open the group just moved to the new location
|
|
moved_grp = grp_2.openGroup("group_newest_name");
|
|
moved_grp.close();
|
|
|
|
// Verify that the groups are not in previous locations
|
|
try {
|
|
moved_grp = grp_1.openGroup("group_newer_name");
|
|
moved_grp.close();
|
|
|
|
H5_FAILED(); // Should throw an exception but didn't
|
|
cerr << " Group group_newer_name should not be in GROUP1NAME" << endl;
|
|
}
|
|
catch (Exception &E) {
|
|
// expected
|
|
}
|
|
try {
|
|
moved_grp = grp_2.openGroup("group_newer_name");
|
|
moved_grp.close();
|
|
|
|
H5_FAILED(); // Should throw an exception but didn't
|
|
cerr << " Group group_newer_name should not be in GROUP2NAME" << endl;
|
|
}
|
|
catch (Exception &E) {
|
|
// expected
|
|
}
|
|
try {
|
|
moved_grp = grp_2.openGroup("group_new_name");
|
|
moved_grp.close();
|
|
|
|
H5_FAILED(); // Should throw an exception but didn't
|
|
cerr << " Group group_new_name should not be in GROUP2NAME" << endl;
|
|
}
|
|
catch (Exception &E) {
|
|
// expected
|
|
}
|
|
try {
|
|
moved_grp = grp_1.openGroup("group_copy");
|
|
moved_grp.close();
|
|
|
|
H5_FAILED(); // Should throw an exception but didn't
|
|
cerr << " Group group_copy should not be in GROUP1NAME" << endl;
|
|
}
|
|
catch (Exception &E) {
|
|
// expected
|
|
}
|
|
PASSED();
|
|
} // end of try block
|
|
catch (Exception &E) {
|
|
issue_fail_msg("test_move()", __LINE__, __FILE__, E.getCDetailMsg());
|
|
}
|
|
} // test_move
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: test_copy
|
|
*
|
|
* Purpose: Tests wrappers of H5Lcopy()
|
|
*
|
|
* Return: Success: 0
|
|
* Failure: number of errors
|
|
* March, 2018
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
static void
|
|
test_copy(hid_t fapl_id, hbool_t new_format)
|
|
{
|
|
char filename[1024];
|
|
|
|
if (new_format)
|
|
SUBTEST("Group::copyLink (w/new group format)")
|
|
else
|
|
SUBTEST("Group::copyLink")
|
|
|
|
try {
|
|
// Create two new files
|
|
h5_fixname(FILENAME[0], fapl_id, filename, sizeof filename);
|
|
H5File file_a(filename, H5F_ACC_TRUNC, FileCreatPropList::DEFAULT, fapl_id);
|
|
h5_fixname(FILENAME[1], fapl_id, filename, sizeof filename);
|
|
H5File file_b(filename, H5F_ACC_TRUNC, FileCreatPropList::DEFAULT, fapl_id);
|
|
|
|
// Create groups in first file
|
|
Group grp_1(file_a.createGroup(GROUP1NAME));
|
|
Group grp_2(file_a.createGroup(GROUP2NAME));
|
|
Group grp_move(grp_1.createGroup("group_copy"));
|
|
|
|
// Create hard and soft links
|
|
grp_1.link("group_copy", H5L_SAME_LOC, "hard");
|
|
grp_2.link("/First_group/group_copy", "soft");
|
|
|
|
// Copy a group across files, should fail
|
|
try {
|
|
grp_1.copyLink("group_copy", file_b, "group_new_name");
|
|
}
|
|
catch (Exception &E) {
|
|
// expected
|
|
}
|
|
|
|
// Copy a soft link across files, should succeed
|
|
grp_2.copyLink("soft", file_b, "soft_new_name");
|
|
if (file_b.exists("soft_new_name") != TRUE)
|
|
throw InvalidActionException("H5File::exists", "soft_new_name doesn't exist");
|
|
|
|
// Move a group across groups in the same file while renaming it
|
|
H5std_string copy_name("group_copy");
|
|
H5std_string new_name("group_new_name");
|
|
grp_1.copyLink(copy_name, grp_2, new_name);
|
|
|
|
// Open the group just moved to the new location.
|
|
Group moved_grp(grp_2.openGroup("group_new_name"));
|
|
moved_grp.close();
|
|
|
|
// Verify that the group is also in the original location
|
|
moved_grp = grp_1.openGroup("group_copy");
|
|
moved_grp.close();
|
|
|
|
// Create a group in the same location with a different name
|
|
grp_2.copyLink("group_new_name", "group_newer_name");
|
|
|
|
// Open the group
|
|
moved_grp = grp_2.openGroup("group_newer_name");
|
|
moved_grp.close();
|
|
|
|
// Verify that the group is also in the original location
|
|
moved_grp = grp_2.openGroup("group_new_name");
|
|
moved_grp.close();
|
|
|
|
// Use H5Lcopy to copy to a different location with the same name
|
|
grp_2.copyLink("group_newer_name", grp_1, "group_newer_name");
|
|
|
|
// Open the group
|
|
moved_grp = grp_1.openGroup("group_newer_name");
|
|
moved_grp.close();
|
|
|
|
// Verify that the group is still in the previous location
|
|
moved_grp = grp_2.openGroup("group_new_name");
|
|
moved_grp.close();
|
|
|
|
// Copy the group while giving long paths
|
|
file_a.copyLink("/First_group/group_newer_name", grp_2, "/Second_group/group_newest_name");
|
|
|
|
// Open the newest group just moved to the new location
|
|
moved_grp = grp_2.openGroup("group_newest_name");
|
|
moved_grp.close();
|
|
|
|
// Verify that the group is still in all previous original locations
|
|
moved_grp = grp_1.openGroup("group_newer_name");
|
|
moved_grp.close();
|
|
|
|
moved_grp = grp_2.openGroup("group_newer_name");
|
|
moved_grp.close();
|
|
|
|
moved_grp = grp_2.openGroup("group_new_name");
|
|
moved_grp.close();
|
|
|
|
moved_grp = grp_1.openGroup("group_copy");
|
|
moved_grp.close();
|
|
|
|
// Delete "group_newer_name" from group 2, then try to open it.
|
|
grp_2.unlink("group_newer_name");
|
|
try {
|
|
moved_grp = grp_2.openGroup("group_newer_name");
|
|
moved_grp.close();
|
|
|
|
H5_FAILED(); // Should throw an exception but didn't
|
|
cerr << " Group group_newer_name should not be in GROUP2NAME" << endl;
|
|
}
|
|
catch (Exception &E) {
|
|
// expected
|
|
}
|
|
|
|
// Delete "group_copy" from group 1, then try to open it.
|
|
grp_1.unlink("group_copy");
|
|
try {
|
|
moved_grp = grp_1.openGroup("group_copy");
|
|
moved_grp.close();
|
|
|
|
H5_FAILED(); // Should throw an exception but didn't
|
|
cerr << " Group group_copy should not be in GROUP1NAME" << endl;
|
|
}
|
|
catch (Exception &E) {
|
|
// expected
|
|
}
|
|
|
|
PASSED();
|
|
} // end of try block
|
|
catch (Exception &E) {
|
|
issue_fail_msg("test_copy()", __LINE__, __FILE__, E.getCDetailMsg());
|
|
}
|
|
} // test_copy
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: test_num_links
|
|
*
|
|
* Purpose Test setting and getting limit of number of links
|
|
*
|
|
* Return Success: 0
|
|
* Failure: -1
|
|
*
|
|
* October 16, 2009
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
static void
|
|
test_num_links(hid_t fapl_id, hbool_t new_format)
|
|
{
|
|
char filename[NAME_BUF_SIZE];
|
|
|
|
if (new_format)
|
|
SUBTEST("Setting number of links (w/new group format)")
|
|
else
|
|
SUBTEST("Setting number of links")
|
|
|
|
try {
|
|
// Use the file access template id to create a file access prop. list.
|
|
FileAccPropList fapl(fapl_id);
|
|
|
|
h5_fixname(FILENAME[0], fapl_id, filename, sizeof filename);
|
|
H5File file(filename, H5F_ACC_RDWR, FileCreatPropList::DEFAULT, fapl);
|
|
|
|
LinkAccPropList lapl;
|
|
size_t nlinks = 5;
|
|
lapl.setNumLinks(nlinks);
|
|
|
|
// Read it back and verify
|
|
size_t read_nlinks = lapl.getNumLinks();
|
|
verify_val(read_nlinks, nlinks, "LinkAccPropList::setNumLinks", __LINE__, __FILE__);
|
|
|
|
PASSED();
|
|
} // end of try block
|
|
catch (Exception &E) {
|
|
issue_fail_msg("test_num_links()", __LINE__, __FILE__, E.getCDetailMsg());
|
|
}
|
|
} // test_num_links
|
|
|
|
// Data for visit on the file
|
|
static const obj_visit_t file_visit[] = {
|
|
{".", H5O_TYPE_GROUP},
|
|
{"Data", H5O_TYPE_GROUP},
|
|
{"Data/Compressed_Data", H5O_TYPE_DATASET},
|
|
{"Data/Float_Data", H5O_TYPE_DATASET},
|
|
};
|
|
|
|
// Data for visit on the group
|
|
static const obj_visit_t group_visit[] = {
|
|
{".", H5O_TYPE_GROUP},
|
|
{"Compressed_Data", H5O_TYPE_DATASET},
|
|
{"Float_Data", H5O_TYPE_DATASET},
|
|
};
|
|
|
|
const H5std_string FILE_NAME("tvisit.h5");
|
|
const H5std_string GROUP_NAME("/Data");
|
|
const H5std_string DSET1_NAME("/Data/Compressed_Data");
|
|
const H5std_string DSET2_NAME("/Data/Float_Data");
|
|
const int RANK = 2;
|
|
|
|
// Operator function
|
|
static int
|
|
visit_obj_cb(H5Object &obj, const H5std_string name, const H5O_info2_t *oinfo, void *_op_data)
|
|
{
|
|
(void)obj; // Unused
|
|
|
|
ovisit_ud_t *op_data = static_cast<ovisit_ud_t *>(_op_data);
|
|
|
|
// Check for correct object information
|
|
if (strcmp(op_data->info[op_data->idx].path, name.c_str()) != 0)
|
|
return (H5_ITER_ERROR);
|
|
if (op_data->info[op_data->idx].type != oinfo->type)
|
|
return (H5_ITER_ERROR);
|
|
|
|
// Advance to next location
|
|
op_data->idx++;
|
|
|
|
return (H5_ITER_CONT);
|
|
}
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: test_visit
|
|
*
|
|
* Purpose Test H5Object::visit
|
|
*
|
|
* Return None
|
|
*
|
|
* February 8, 2019
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
static void
|
|
test_visit(hid_t fapl_id, hbool_t new_format)
|
|
{
|
|
hsize_t dims[2];
|
|
hsize_t cdims[2];
|
|
char filename[NAME_BUF_SIZE];
|
|
|
|
if (new_format)
|
|
SUBTEST("H5Object::visit (w/new group format)")
|
|
else
|
|
SUBTEST("H5Object::visit")
|
|
|
|
try {
|
|
// Use the file access template id to create a file access prop. list
|
|
FileAccPropList fapl(fapl_id);
|
|
|
|
// Build the hdf5 file name and create the file
|
|
h5_fixname(FILENAME[3], fapl_id, filename, sizeof filename);
|
|
H5File *file = new H5File(filename, H5F_ACC_TRUNC, FileCreatPropList::DEFAULT, fapl);
|
|
|
|
// Create a group
|
|
Group *group = new Group(file->createGroup(GROUP_NAME));
|
|
|
|
// Create a chunked/compressed dataset within this group specified by path
|
|
dims[0] = 20;
|
|
dims[1] = 2;
|
|
cdims[0] = 2;
|
|
cdims[1] = 2;
|
|
DataSpace * dataspace = new DataSpace(RANK, dims); // create new dspace
|
|
DSetCreatPropList ds_creatplist; // create dataset creation prop list
|
|
ds_creatplist.setChunk(2, cdims); // then modify it for compression
|
|
ds_creatplist.setDeflate(6);
|
|
|
|
DataSet *dataset =
|
|
new DataSet(file->createDataSet(DSET1_NAME, PredType::NATIVE_INT, *dataspace, ds_creatplist));
|
|
|
|
delete dataset;
|
|
delete dataspace;
|
|
|
|
// Create another dataset
|
|
dims[0] = 5;
|
|
dims[1] = 2;
|
|
dataspace = new DataSpace(RANK, dims); // create second dspace
|
|
dataset = new DataSet(file->createDataSet(DSET2_NAME, PredType::NATIVE_FLOAT, *dataspace));
|
|
|
|
// Close everything
|
|
delete dataset;
|
|
delete dataspace;
|
|
delete group;
|
|
delete file;
|
|
|
|
// Reopen the file and group in the file.
|
|
file = new H5File(filename, H5F_ACC_RDWR);
|
|
group = new Group(file->openGroup("Data"));
|
|
|
|
// Open the group
|
|
dataset = new DataSet(group->openDataSet(DSET2_NAME));
|
|
delete dataset;
|
|
|
|
// Visit objects in the file
|
|
ovisit_ud_t udata; /* User-data for visiting */
|
|
udata.idx = 0;
|
|
udata.info = file_visit;
|
|
|
|
file->visit(H5_INDEX_NAME, H5_ITER_INC, visit_obj_cb, &udata, H5O_INFO_BASIC);
|
|
|
|
// Visit objects in the group
|
|
udata.idx = 0;
|
|
udata.info = group_visit;
|
|
|
|
group->visit(H5_INDEX_NAME, H5_ITER_INC, visit_obj_cb, &udata, H5O_INFO_BASIC);
|
|
|
|
// Close the group and file.
|
|
delete group;
|
|
delete file;
|
|
|
|
PASSED();
|
|
} // end of try block
|
|
catch (Exception &E) {
|
|
cerr << "in catch" << endl;
|
|
issue_fail_msg("test_visit()", __LINE__, __FILE__, E.getCDetailMsg());
|
|
}
|
|
} // test_visit()
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: test_links
|
|
*
|
|
* Purpose Test links
|
|
*
|
|
* Return None
|
|
*
|
|
* October 16, 2009
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
extern "C" void
|
|
test_links()
|
|
{
|
|
hid_t fapl_id, fapl2_id; /* File access property lists */
|
|
unsigned new_format; /* Whether to use the new format or not */
|
|
|
|
if ((fapl_id = h5_fileaccess()) < 0)
|
|
throw Exception("test_links", "Unable to get file access property list");
|
|
|
|
// Output message about test being performed
|
|
MESSAGE(5, ("Testing Various Links\n"));
|
|
try {
|
|
/* Copy the file access property list */
|
|
if ((fapl2_id = H5Pcopy(fapl_id)) < 0)
|
|
throw Exception("test_links", "H5Pcopy failed");
|
|
|
|
/* Set the "use the latest version of the format" bounds for creating
|
|
objects in the file */
|
|
if (H5Pset_libver_bounds(fapl2_id, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0)
|
|
throw Exception("test_links", "H5Pset_libver_bounds failed");
|
|
|
|
/* Loop over using new group format */
|
|
for (new_format = FALSE; new_format <= TRUE; new_format++) {
|
|
hid_t my_fapl_id;
|
|
|
|
/* Check for FAPL to use */
|
|
if (new_format)
|
|
my_fapl_id = fapl2_id;
|
|
else
|
|
my_fapl_id = fapl_id;
|
|
|
|
/* General tests... (on both old & new format groups */
|
|
// FileAccPropList may be passed in instead of fapl id
|
|
test_basic_links(my_fapl_id, new_format);
|
|
test_num_links(my_fapl_id, new_format);
|
|
test_move(my_fapl_id, new_format);
|
|
test_copy(my_fapl_id, new_format);
|
|
test_lcpl(my_fapl_id, new_format);
|
|
test_visit(my_fapl_id, new_format);
|
|
} /* end for */
|
|
|
|
/* Close 2nd FAPL */
|
|
H5Pclose(fapl2_id);
|
|
|
|
h5_clean_files(FILENAME, fapl_id);
|
|
}
|
|
catch (Exception &E) {
|
|
issue_fail_msg("test_links()", __LINE__, __FILE__, E.getCDetailMsg());
|
|
}
|
|
}
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: cleanup_links
|
|
*
|
|
* Purpose Cleanup temporary test files
|
|
*
|
|
* Return none
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
extern "C" void
|
|
cleanup_links()
|
|
{
|
|
HDremove(FILENAME[0]);
|
|
HDremove(FILENAME[1]);
|
|
}
|