* Brings CMake updates from develop * Brings reduction in pedantic casts from develop * Purges UFAIL from the library (#637) * Committing clang-format changes * Purges UFAIL from the library * H5HL_insert change requested in PR Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Removes gratuitous (double)x.yF casts (#632) * Committing clang-format changes * Removes gratuitous (double)x.yF casts * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Committing clang-format changes * Cleans up a const warning left over from previous constification (#633) * Committing clang-format changes * Adds consts to a few global variables * Cleans up a const warning left over from previous constification Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Formatted source * Bring over some VOL registration changes * VOL cleanup * H5VL_request_status_t substitutions * H5F.c cleanup * Minor API tweaks from develop * Moves H5G package init/teardown to H5Gint.c * H5G cleanup * H5M cleanup * H5SM cleanup * H5T cleanup * H5R cleanup * H5Lpublic.h cleanup * H5L cleanup * H5O cleanup * H5A, H5CS, and H5AC cleanup * Moved H5A init/teardown code to H5Aint.c * Moves H5D I/O functions to H5D.c * H5D cleanup * Misc minor cleanup * H5P close cleanup * H5Tpublic.h cleanup * Fixes err_compat test * H5PLpublic.h cleanup * Updates H5Ppublic.h * H5Fpublic.h updates * H5A.c cleanup * Brings over H5Aexists and related changes * Brings CMake shell testing changes from develop * Close callback changes * H5R and H5Tcommit normalization * err_compat test works now * H5O tweaks * Updates VOL registration code * Brings over H5VL_create_object * H5Tconv.c reformatting * H5T.c tweaks * Brings datatype and reference updates from develop * Brings VOL plugin loading changes from develop * Brings event sets from develop * Brings async functions over * Tools changes * Brings over many tools changes from develop * Brings VOL flags from develop * Fixes h5dump double/float tests * Updates h5repack tests * Brings h5diff test changes from develop * Last h5dump changes * Brings test changes from develop * Committing clang-format changes * Tidied h5_testing() * Brings chunk iteration code + misc from develop * Updates vds test * Enables external link parallel test * Brings updated property lists from develop * H5G changes from develop * H5MF cleanup * Brings vfd_swmr test back into CMake * Updates threadsafe test * Updates plist test * Brings recent changes from develop * Require a C++11 compiler to build the C++ wrappers (#693) * Committing clang-format changes * Requires a C++11 compiler to build the C++ wrappers Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Fix H5FD_mpio_Debug="rw" can report MPI_count instead of bytes (#699) * Removes pre-C99 build and header cruft (#700) * Assumes ANSI C headers exist * Assumes stdbool.h, stdint.h, and inttypes.h are present * Assumes the C++ compiler can handle stdint.h * Removes all work-arounds for missing functionality, especially stdbool.h Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Updates release documents * Brings parallel changes from develop * Adds a VFD/parallel check program for the VFD SWMR shell test * Updates MANIFEST * Disable building VFD SWMR acceptance tests on CMake * Removes err.h from genall5.c * Partial cleanup of H5Cpkg.h * Fixes printf specifiers in H5Cdbg.c * Java and fortran cmake changes (#694) * OESS-98 convert plugin option to FetchContent, add tests * Fixes for pkcfg files because of plugin option * OESS-98 fix tools test for plugins * Keep doxygen comments under 100 chars long - format hint * Whitespace * HDFFV-11144 - Reclassify CMake messages * HDFFV-11099/11100 added help text * Reworked switch statement to compare string instead * Fix typo * Update CDash mode * Correct name of threadsafe * Correct option name * Undo accidental commit * Note LLVM 10 to 11 format default changes * Update format plugin * Undo clang-format version 11 changes * One more correction * Update supported platforms * Revert whitespace changes * Correct whitespace * Changes from PR#3 * HDFFV-11213 added option to control gcc10 warnings diagnostics * HDFFV-11212 Use the new references correctly in JNI utility and tests * format source * Fix typo * Add new test file * HDFFV-11212 - update test and remove unused arg * Minor non-space formatting changes * Use H5I_INVALID_ID instead of "-1" * source formatting * add missing testfile, update jni function * Undo commit of debug code * remove mislocated file * Fix h5repack test for handling of fapls and id close * Update h5diff test files usage text * HDFFV-11212 add new ref tests for JNI export dataset * src format update * Remove blank line typo * src format typo * long double requires %Lg * Another long double foramt specifer S.B. %Lg * issue with t128bit test * Windows issue with h5dump and type. * Fix review issues * refactor function nesting and fix error checks * format fixes * Remove untested functions and javadoc quiet comments * Restore TRY block. * Change string append errors to memory exception * revert to H5_JNI_FATAL_ERROR - support functions need work * Add assertion error for h5util functions * remove duplicate function * format fix * Revert HD function error handling * Update copyright comments * GH #386 java folder copyright corrections * Whitespace * GH #359 implement and fix tools 1.6 API usage * remove excessive comments * Flip inits to correct ifdef section * rework ifdef to be simpler * format issue * Reformat ifdef inits * remove static attribute * format compliance * Update names * Revert because logic relies on float not being int * Changes noticed from creating merge of #412 * Double underscore change * Correct compiler version variable used * Remove header guard underscores * Whitespace cleanup * Split format source and commit changes on repo push * remove pre-split setting * Change windows TS to use older VS. * correct window os name * HDFFV-11212 JNI export util and Javadoc * Suggested review changes * Another change found * Committing clang-format changes * HDFFV-11113 long double in tools * HDFFV-11113 add note * Disable long double tests for now * HDFFV-11228 remove arbitrary CMake warning groups. * Make each flag a string * Some Javadoc warning fixes * Updated javadoc fixes * # WARNING: head commit changed in the meantime HDFFV-11229 Fix long double usage in tools and java Changed h5dump and h5ls to just print 128-bit for long double type. Added test and file for dataset and attributes with all three float types. * Committing clang-format changes * HDFFV-11229 Add release note * HDFFV-11229 windows testfile needed * fix typo * Remove non supported message text * HDFFV-11229 - change ldouble test to check both native and general * HDFFV-11229 add second file compare * HDFFV-11229 fix reference file * HDFFV-11229 autotools check two refs * HDFFV-11229 revert back to removal of NATIVE_LDOUBLE in tools output * Committing clang-format changes * Update release note * Update attribute type of ref file * Change source of ninja for macs * try port instead of brew * Recommended is to use brew. * Undo non long double changes * remove unneeded file * Fix perl and doxygen CMake code * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument * Add stamp files to BYPRODUCTS * Only one copy of file exists * Fix custom cmmand depends targets * Fix fortran custom command DEPENDS * Add LD_LIBRARY_PATH to tests * Add custom target for DEPENDS * Add h5detect conditionaly to generated target DEPENDS * Correct DEPENDS targets * Parallel builds need the mpi compiler for pkgconfig scripts. * install only if MPI build * Fortran target depends * Remove incorrect source attribute * doxygen adjustments * doxygen build updates * Correct version * Correct function version - function has been merged to 1.12 * Correct version string for map functions * Cleanup warnings for tools debug builds * TRILAB-227 - fix indexing for h5diff selections * Correct location of pos to index function call * TRILAB-227 Enable test * Quote subset args * Use MATCHES because of AppleClang * if blocks needed for build modes * Update list of DT platforms * VS2019 correctly displays float values * revert VS2019 change * Issue #669 remove version from pkgcfg filename * remove version from h5cc script * Java reference functions updated enabled fortran in cmake gcc action yaml file java reference test changed to correctly test refs jni reference functions that create ids changed to use jni id logging * Correct BYPRODUCTS argument * Correct more genereated files BYPRODUCTS * BYPRODUCTS must have unique locations * Fix typo Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Removes alternative function enter/leave macro scheme (#678) * Committing clang-format changes * Converted BEGIN_FUNC, etc. macros to FUNC_ENTER * Rips out the BEGIN_FUNC, etc. macros * Removes 'end if', etc. comments from H5HL package * Committing clang-format changes * Fixes an H5EA iterate issue * Fixes an issue in the H5FA iterator code * Further cleanup in bin/trace after macro removal * Iterator changes in H5EA and H5FA Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Split H5L.c internal code to H5Lint.c (#691) * Committing clang-format changes * Splits internal parts of H5L.c to H5Lint.c Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Clean up type size checks in configure.ac (#702) * Committing clang-format changes * C++ warning and build fixes (#707) * Committing clang-format changes * C++ build and warning updates * Fixes all warnings on C++ (with gcc 9.3) * Updates CMake and Autotools C++ builds * Undo warning clobber Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Removes some DEC Alpha cruft from H5detect and H5private.h (#708) * Cleans up hsize_t and haddr_t size guessing (#709) * Cleans up definitions of haddr_t and hsize_t + cruft removal * Formatted source * Updates PGI C/C++ configurations (#715) * Updates PGI C/C++ configurations Tweaks some settings and configures pgc++ to use C++11 * Updated copyright information * Adds an Intel C++ configuration file (#716) * Adds an Intel C++ configuration file * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> * Updates bin/trace script to correctly wrap H5TRACE macros near clang-format column limit (#719) * Removes clang-format comments from H5O.c call * Fixes bin/trace to correctly wrap lines near the clang-format limit * Removed unused variable from bin/trace * Fixes issue with ccmake that prevents building Fortran (#723) ccmake runs iteratively, and the check_fortran_source_runs macros were clobbering a single output file that did not get updated on further configure iterations Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
765 lines
27 KiB
C++
765 lines
27 KiB
C++
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
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* Copyright by The HDF Group. *
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* Copyright by the Board of Trustees of the University of Illinois. *
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* All rights reserved. *
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* *
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* This file is part of HDF5. The full HDF5 copyright notice, including *
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* terms governing use, modification, and redistribution, is contained in *
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* the COPYING file, which can be found at the root of the source code *
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* distribution tree, or in https://www.hdfgroup.org/licenses. *
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* If you do not have access to either file, you may request a copy from *
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* help@hdfgroup.org. *
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* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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/*****************************************************************************
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FILE
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tobject.cpp - HDF5 C++ testing object related functionality
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***************************************************************************/
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#include <iostream>
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#include <string>
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#include "H5Cpp.h" // C++ API header file
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using namespace H5;
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#include "h5test.h"
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#include "h5cpputil.h" // C++ utilility header file
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const H5std_string FILE_OBJECTS("tobjects.h5");
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const H5std_string FILE_OBJHDR("tobject_header.h5");
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const H5std_string GROUP1("Top Group");
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const H5std_string GROUP1_PATH("/Top Group");
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const H5std_string GROUP1_1("Sub-Group 1.1");
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const H5std_string GROUP1_1_PATH("/Top Group/Sub-Group 1.1");
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const H5std_string GROUP1_2("Sub-Group 1.2");
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const H5std_string GROUP1_2_PATH("/Top Group/Sub-Group 1.2");
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const H5std_string DSET_DEFAULT_NAME("default");
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const H5std_string DSET_IN_FILE("Dataset in File");
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const H5std_string DSET_IN_FILE_PATH("/Dataset in File");
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const H5std_string DSET_IN_GRP1("Dataset_in_Group_1");
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const H5std_string DSET_IN_GRP1_PATH("/Top Group/Dataset_in_Group_1");
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const H5std_string DSET_IN_GRP1_2("Dataset_in_Group_1.2");
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const H5std_string DSET_IN_GRP1_2_PATH("/Top Group/Sub-Group 1.2/Dataset_in_Group_1.2");
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/*-------------------------------------------------------------------------
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* Function: test_get_objname
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*
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* Purpose Tests getting object name of groups and datasets.
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*
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* Description:
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* File structure:
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* GROUP1
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* GROUP1_1
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* GROUP1_2
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* DSET_IN_GRP1_2
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* DSET_IN_GRP1
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* DSET_IN_FILE
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*
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*
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* Return Success: 0
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* Failure: -1
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*
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* Programmer Binh-Minh Ribler
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* Friday, March 4, 2014
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*-------------------------------------------------------------------------
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*/
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static void
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test_get_objname()
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{
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SUBTEST("H5Object::getObjName on Groups and Datasets");
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try {
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// Create file
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H5File file(FILE_OBJECTS, H5F_ACC_TRUNC);
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// Create a top group and 2 subgroups
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Group grp1 = file.createGroup(GROUP1, 0);
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Group grp1_1 = grp1.createGroup(GROUP1_1, 0);
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Group grp1_2 = grp1.createGroup(GROUP1_2, 0);
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// Get part of the group's name, random length using
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// ssize_t getObjName(char* comment, size_t buf_size)
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// Get the length of the group's name first
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ssize_t name_len = grp1.getObjName(NULL);
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// Random length is 4
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if (name_len > 4) {
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char *grp1_name = new char[5];
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name_len = grp1.getObjName(grp1_name, 5);
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verify_val(const_cast<const char *>(grp1_name), "/Top", "Group::getObjName", __LINE__, __FILE__);
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delete[] grp1_name;
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}
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// Create a data space
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hsize_t dims[2];
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dims[0] = 2;
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dims[1] = 5;
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DataSpace space(2, dims, NULL);
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// Create a dataset in the file
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DataSet dsinfile = file.createDataSet(DSET_IN_FILE, PredType::NATIVE_DOUBLE, space);
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// Create a dataset in the group
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DataSet dsingrp = grp1.createDataSet(DSET_IN_GRP1, PredType::NATIVE_INT, space);
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// Get and verify the name of each dataset, using
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// H5std_string getObjName() and
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// ssize_t getObjName(H5std_string& obj_name, size_t len = 0)
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H5std_string ds_name = dsinfile.getObjName();
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verify_val(ds_name, DSET_IN_FILE_PATH, "DataSet::getObjName", __LINE__, __FILE__);
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name_len = dsingrp.getObjName(ds_name); // default len
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verify_val(ds_name, DSET_IN_GRP1_PATH, "DataSet::getObjName", __LINE__, __FILE__);
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// Close dataset
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dsingrp.close();
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// Create a dataset in sub-group 1.2
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dsingrp = grp1_2.createDataSet(DSET_IN_GRP1_2, PredType::NATIVE_INT, space);
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// Get and verify the name of the dataset that belongs to subgroup
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// 1.2, using H5std_string getObjName()
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ds_name = dsingrp.getObjName();
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verify_val(ds_name, DSET_IN_GRP1_2_PATH, "DataSet::getObjName", __LINE__, __FILE__);
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// Close dataset
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dsingrp.close();
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// Reopen that same dataset then check the name again with another
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// overload: ssize_t getObjName(H5std_string& obj_name, size_t len = 0)
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dsingrp = grp1_2.openDataSet(DSET_IN_GRP1_2);
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name_len = dsingrp.getObjName(ds_name);
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verify_val(ds_name, DSET_IN_GRP1_2_PATH, "DataSet::getObjName", __LINE__, __FILE__);
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// Everything will be closed as they go out of scope
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PASSED();
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} // try block
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// catch all other exceptions
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catch (Exception &E) {
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issue_fail_msg("test_get_objname", __LINE__, __FILE__);
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}
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} // test_get_objname
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/*-------------------------------------------------------------------------
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* Function: test_existance
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*
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* Purpose Tests getting object name of groups and datasets.
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*
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* Description:
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* File structure:
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* GROUP1
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* GROUP1_1
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* GROUP1_2
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* DSET_IN_GRP1_2
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* DSET_IN_GRP1
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* DSET_IN_FILE
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*
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*
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* Return Success: 0
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* Failure: -1
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*
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* Programmer Binh-Minh Ribler
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* Friday, March 4, 2014
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*-------------------------------------------------------------------------
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*/
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static void
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test_existance()
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{
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SUBTEST("H5File::exists and Group::exists");
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try {
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// Open file
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H5File file(FILE_OBJECTS, H5F_ACC_RDONLY);
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// Check if GROUP1 exists in the file
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bool exists = file.nameExists(GROUP1);
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verify_val(exists, TRUE, "Group::nameExists GROUP1_1", __LINE__, __FILE__);
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// Deprecated
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exists = file.exists(GROUP1);
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verify_val(exists, TRUE, "Group::exists GROUP1_1", __LINE__, __FILE__);
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// Open GROUP1
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Group grp1 = file.openGroup(GROUP1);
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// Check if GROUP1_1 and GROUP1_2 exist in GROUP1
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exists = grp1.nameExists(GROUP1_1);
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verify_val(exists, TRUE, "Group::nameExists GROUP1_1", __LINE__, __FILE__);
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exists = grp1.nameExists(GROUP1_2);
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verify_val(exists, TRUE, "Group::nameExists GROUP1_2", __LINE__, __FILE__);
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// Deprecated
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exists = grp1.exists(GROUP1_1);
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verify_val(exists, TRUE, "Group::exists GROUP1_1", __LINE__, __FILE__);
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exists = grp1.exists(GROUP1_2);
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verify_val(exists, TRUE, "Group::exists GROUP1_2", __LINE__, __FILE__);
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// Check if DSET_IN_GRP1 exists in GROUP1
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exists = grp1.nameExists(DSET_IN_GRP1);
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verify_val(exists, TRUE, "Group::nameExists DSET_IN_GRP1", __LINE__, __FILE__);
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// Deprecated
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exists = grp1.exists(DSET_IN_GRP1);
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verify_val(exists, TRUE, "Group::exists DSET_IN_GRP1", __LINE__, __FILE__);
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// Open GROUP1_2
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Group grp1_2 = grp1.openGroup(GROUP1_2);
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// Check if DSET_IN_GRP1_2 exists in GROUP1_2
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exists = grp1_2.nameExists(DSET_IN_GRP1_2);
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verify_val(exists, TRUE, "Group::nameExists DSET_IN_GRP1_2", __LINE__, __FILE__);
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// Deprecated
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exists = grp1_2.exists(DSET_IN_GRP1_2);
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verify_val(exists, TRUE, "Group::exists DSET_IN_GRP1_2", __LINE__, __FILE__);
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// Check if a dataset exists given dataset as location with full path name
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DataSet dset1 = file.openDataSet(DSET_IN_FILE);
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exists = dset1.nameExists("/Top Group/Dataset_in_Group_1");
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verify_val(exists, TRUE, "Group::nameExists given dataset with full path name", __LINE__, __FILE__);
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exists = grp1_2.nameExists(DSET_IN_GRP1);
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verify_val(exists, FALSE, "Group::nameExists DSET_IN_GRP1", __LINE__, __FILE__);
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// Deprecated
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exists = dset1.exists("/Top Group/Dataset_in_Group_1");
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verify_val(exists, TRUE, "Group::exists given dataset with full path name", __LINE__, __FILE__);
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exists = grp1_2.exists(DSET_IN_GRP1);
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verify_val(exists, FALSE, "Group::exists DSET_IN_GRP1", __LINE__, __FILE__);
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// Everything will be closed as they go out of scope
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PASSED();
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} // try block
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// catch all other exceptions
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catch (Exception &E) {
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issue_fail_msg("test_existance", __LINE__, __FILE__);
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}
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} // test_existance
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/*-------------------------------------------------------------------------
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* Function: test_get_objname_ontypes
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*
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* Purpose Test getting object name from various committed types.
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*
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* Return Success: 0
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* Failure: -1
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*
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* Programmer Binh-Minh Ribler
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* March 4, 2014
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*-------------------------------------------------------------------------
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*/
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static void
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test_get_objname_ontypes()
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{
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SUBTEST("H5Object::getObjName on Committed Datatypes");
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try {
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// Create a file with default prop lists
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H5File file(FILE_OBJECTS, H5F_ACC_RDWR);
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// Create a group
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Group grp = file.createGroup("typetests");
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// Create a datatype and save it
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IntType inttype(PredType::STD_B8LE);
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inttype.commit(file, "INT type of STD_B8LE");
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// Close the type then open it again to test getting its name
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inttype.close();
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inttype = file.openIntType("INT type of STD_B8LE"); // deprecated
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// Get and verify its name
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H5std_string inttype_name = inttype.getObjName();
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verify_val(inttype_name, "/INT type of STD_B8LE", "DataType::getObjName", __LINE__, __FILE__);
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// Close the type then open it again to test getting its name, but
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// with the constructor this time
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inttype.close();
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IntType std_b8le(file, "INT type of STD_B8LE");
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// Get and verify its name
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H5std_string std_b8le_name = std_b8le.getObjName();
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verify_val(std_b8le_name, "/INT type of STD_B8LE", "DataType::getObjName", __LINE__, __FILE__);
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// Make copy of a predefined type and save it
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DataType dtype(PredType::STD_B8LE);
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dtype.commit(file, "STD_B8LE");
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// Close the data type and file
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dtype.close();
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file.close();
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// Re-open the file and the data type to test getting its name
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file.openFile(FILE_OBJECTS, H5F_ACC_RDWR);
|
|
dtype = file.openDataType("STD_B8LE"); // deprecated
|
|
|
|
// Get and verify its name
|
|
H5std_string type_name = dtype.getObjName();
|
|
verify_val(type_name, "/STD_B8LE", "DataType::getObjName", __LINE__, __FILE__);
|
|
|
|
// Close the type and open it again with the constructor then test
|
|
// getting its name
|
|
dtype.close();
|
|
DataType dtype2(file, "STD_B8LE");
|
|
type_name = dtype2.getObjName();
|
|
verify_val(type_name, "/STD_B8LE", "DataType::getObjName", __LINE__, __FILE__);
|
|
|
|
// Test getting type's name from copied type
|
|
DataType copied_type;
|
|
copied_type.copy(dtype2);
|
|
copied_type.commit(file, "copy of STD_B8LE");
|
|
type_name = copied_type.getObjName();
|
|
verify_val(type_name, "/copy of STD_B8LE", "DataType::getObjName", __LINE__, __FILE__);
|
|
|
|
// Test copying an integer predefined type
|
|
IntType new_int_type(PredType::NATIVE_INT);
|
|
|
|
// Name this datatype
|
|
new_int_type.commit(grp, "IntType NATIVE_INT");
|
|
ssize_t name_len = new_int_type.getObjName(type_name); // default len
|
|
verify_val(name_len, static_cast<ssize_t>(HDstrlen("/typetests/IntType NATIVE_INT")),
|
|
"DataType::getObjName", __LINE__, __FILE__);
|
|
verify_val(type_name, "/typetests/IntType NATIVE_INT", "DataType::getObjName", __LINE__, __FILE__);
|
|
|
|
// Close everything or they can be closed when objects go out of scope
|
|
dtype2.close();
|
|
copied_type.close();
|
|
new_int_type.close();
|
|
grp.close();
|
|
|
|
PASSED();
|
|
} // end top try block
|
|
|
|
catch (Exception &E) {
|
|
issue_fail_msg("test_get_objname_ontypes", __LINE__, __FILE__);
|
|
}
|
|
} // test_get_objname_ontypes
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: test_get_objtype
|
|
*
|
|
* Purpose Tests getting object type
|
|
*
|
|
* Return Success: 0
|
|
* Failure: -1
|
|
*
|
|
* Programmer Binh-Minh Ribler
|
|
* Friday, March 4, 2014
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
static void
|
|
test_get_objtype()
|
|
{
|
|
SUBTEST("H5File::childObjType and H5Group::childObjType");
|
|
|
|
try {
|
|
// Open file
|
|
H5File file(FILE_OBJECTS, H5F_ACC_RDWR);
|
|
|
|
// Open the top group
|
|
Group grp1 = file.openGroup(GROUP1);
|
|
|
|
// Create a datatype and save it
|
|
DataType dtype(PredType::STD_I32LE);
|
|
dtype.commit(grp1, "STD_I32LE");
|
|
|
|
// Get and verify object type with
|
|
// H5O_type_t childObjType(const H5std_string& objname)
|
|
H5O_type_t objtype = file.childObjType(DSET_IN_FILE);
|
|
verify_val(static_cast<long>(objtype), static_cast<long>(H5O_TYPE_DATASET), "DataSet::childObjType",
|
|
__LINE__, __FILE__);
|
|
|
|
// Get and verify object type with
|
|
// H5O_type_t childObjType(const char* objname)
|
|
objtype = grp1.childObjType(GROUP1_1.c_str());
|
|
verify_val(static_cast<long>(objtype), static_cast<long>(H5O_TYPE_GROUP), "DataSet::childObjType",
|
|
__LINE__, __FILE__);
|
|
|
|
// Get and verify object type with
|
|
// H5O_type_t childObjType(hsize_t index, H5_index_t index_type,
|
|
// H5_iter_order_t order, const char* objname=".")
|
|
objtype = grp1.childObjType(1, H5_INDEX_NAME, H5_ITER_INC);
|
|
verify_val(static_cast<long>(objtype), static_cast<long>(H5O_TYPE_NAMED_DATATYPE),
|
|
"DataSet::childObjType", __LINE__, __FILE__);
|
|
|
|
// Get and verify object type with
|
|
// H5O_type_t childObjType(hsize_t index,
|
|
// H5_index_t index_type=H5_INDEX_NAME,
|
|
// H5_iter_order_t order=H5_ITER_INC, const char* objname=".")
|
|
objtype = grp1.childObjType(2);
|
|
verify_val(static_cast<long>(objtype), static_cast<long>(H5O_TYPE_GROUP), "DataSet::childObjType",
|
|
__LINE__, __FILE__);
|
|
|
|
// Everything will be closed as they go out of scope
|
|
|
|
PASSED();
|
|
} // try block
|
|
|
|
// catch all other exceptions
|
|
catch (Exception &E) {
|
|
issue_fail_msg("test_get_objtype", __LINE__, __FILE__);
|
|
}
|
|
} // test_get_objtype
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: test_open_object_header
|
|
*
|
|
* Purpose Test Group::getObjId function.
|
|
*
|
|
* Return None
|
|
*
|
|
* Programmer Binh-Minh Ribler (use C version)
|
|
* March, 2017
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
const H5std_string GROUPNAME("group");
|
|
const H5std_string DTYPENAME("group/datatype");
|
|
const H5std_string DTYPENAME_INGRP("datatype");
|
|
const H5std_string DSETNAME("dataset");
|
|
#define RANK 2
|
|
#define DIM0 5
|
|
#define DIM1 10
|
|
|
|
static void
|
|
test_open_object_header()
|
|
{
|
|
hsize_t dims[2];
|
|
|
|
// Output message about test being performed
|
|
SUBTEST("Group::getObjId");
|
|
|
|
try {
|
|
// Create file FILE1
|
|
H5File file1(FILE_OBJHDR, H5F_ACC_TRUNC);
|
|
/* Create a group, dataset, and committed datatype within the file */
|
|
|
|
// Create a group in the root group
|
|
Group grp(file1.createGroup(GROUPNAME));
|
|
grp.close();
|
|
|
|
// Commit the type inside the file
|
|
IntType dtype(PredType::NATIVE_INT);
|
|
dtype.commit(file1, DTYPENAME);
|
|
dtype.close();
|
|
|
|
// Create a new dataset
|
|
dims[0] = DIM0;
|
|
dims[1] = DIM1;
|
|
DataSpace dspace(RANK, dims);
|
|
DataSet dset(file1.createDataSet(DSETNAME, PredType::NATIVE_INT, dspace));
|
|
|
|
// Close dataset and dataspace
|
|
dset.close();
|
|
dspace.close();
|
|
|
|
// Now make sure that getObjId can open all three types of objects
|
|
hid_t obj_grp = file1.getObjId(GROUPNAME);
|
|
hid_t obj_dtype = file1.getObjId(DTYPENAME);
|
|
hid_t obj_dset = file1.getObjId(DSETNAME);
|
|
|
|
// Make sure that each is the right kind of ID
|
|
H5I_type_t id_type = IdComponent::getHDFObjType(obj_grp);
|
|
verify_val(static_cast<long>(id_type), static_cast<long>(H5I_GROUP), "H5Iget_type for group ID",
|
|
__LINE__, __FILE__);
|
|
id_type = IdComponent::getHDFObjType(obj_dtype);
|
|
verify_val(static_cast<long>(id_type), static_cast<long>(H5I_DATATYPE), "H5Iget_type for datatype ID",
|
|
__LINE__, __FILE__);
|
|
id_type = IdComponent::getHDFObjType(obj_dset);
|
|
verify_val(static_cast<long>(id_type), static_cast<long>(H5I_DATASET), "H5Iget_type for dataset ID",
|
|
__LINE__, __FILE__);
|
|
|
|
/* Do something more complex with each of the IDs to make sure */
|
|
|
|
Group grp2(obj_grp);
|
|
hsize_t num_objs = grp2.getNumObjs();
|
|
verify_val(static_cast<long>(num_objs), 1, "H5Gget_info", __LINE__, __FILE__);
|
|
// There should be one object, the datatype
|
|
|
|
// Close datatype object opened from the file
|
|
file1.closeObjId(obj_dtype);
|
|
|
|
dset.setId(obj_dset);
|
|
dspace = dset.getSpace();
|
|
bool is_simple = dspace.isSimple();
|
|
verify_val(is_simple, true, "isSimple", __LINE__, __FILE__);
|
|
dspace.close();
|
|
|
|
// Open datatype object from the group
|
|
obj_dtype = grp2.getObjId(DTYPENAME_INGRP);
|
|
|
|
dtype.setId(obj_dtype);
|
|
H5T_class_t type_class = dtype.getClass();
|
|
verify_val(static_cast<long>(type_class), static_cast<long>(H5T_INTEGER), "H5Tget_class", __LINE__,
|
|
__FILE__);
|
|
dtype.close();
|
|
|
|
// Close datatype object
|
|
grp2.closeObjId(obj_dtype);
|
|
|
|
// Close the group object
|
|
file1.closeObjId(obj_grp);
|
|
|
|
// Try doing something with group, the ID should still work
|
|
num_objs = grp2.getNumObjs();
|
|
verify_val(static_cast<long>(num_objs), 1, "H5Gget_info", __LINE__, __FILE__);
|
|
|
|
// Close the cloned group
|
|
grp2.close();
|
|
|
|
PASSED();
|
|
} // end of try block
|
|
// catch invalid action exception
|
|
catch (InvalidActionException &E) {
|
|
cerr << " in InvalidActionException" << endl;
|
|
cerr << " *FAILED*" << endl;
|
|
cerr << " <<< " << E.getDetailMsg() << " >>>" << endl << endl;
|
|
}
|
|
// catch all other exceptions
|
|
catch (Exception &E) {
|
|
cerr << " in Exception" << endl;
|
|
issue_fail_msg("test_file_name()", __LINE__, __FILE__, E.getCDetailMsg());
|
|
}
|
|
} // test_open_object_header
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: test_getobjectinfo_same_file
|
|
*
|
|
* Purpose Test that querying the object info for objects in the same
|
|
* file will return the same file "number".
|
|
*
|
|
* Return None
|
|
*
|
|
* July, 2018
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
const H5std_string FILE_OBJINFO("tobject_getinfo.h5");
|
|
const H5std_string GROUP1NAME("group1");
|
|
const H5std_string GROUP2NAME("group2");
|
|
static void
|
|
test_getobjectinfo_same_file()
|
|
{
|
|
H5O_info2_t oinfo1, oinfo2; /* Object info structs */
|
|
|
|
// Output message about test being performed
|
|
SUBTEST("Group::getObjinfo");
|
|
|
|
try {
|
|
// Create a new HDF5 file
|
|
H5File file1(FILE_OBJINFO, H5F_ACC_TRUNC);
|
|
|
|
// Create two groups in the file
|
|
Group grp1(file1.createGroup(GROUP1NAME));
|
|
Group grp2(file1.createGroup(GROUP2NAME));
|
|
|
|
// Reset object info
|
|
HDmemset(&oinfo1, 0, sizeof(oinfo1));
|
|
HDmemset(&oinfo2, 0, sizeof(oinfo2));
|
|
|
|
// Query the info of two groups and verify that they have the same
|
|
// file number
|
|
grp1.getObjinfo(oinfo1);
|
|
grp2.getObjinfo(oinfo2);
|
|
verify_val(oinfo1.fileno, oinfo2.fileno, "file number from getObjinfo", __LINE__, __FILE__);
|
|
|
|
// Close groups and file
|
|
grp1.close();
|
|
grp2.close();
|
|
file1.close();
|
|
|
|
// Open the file twice
|
|
file1.openFile(FILE_OBJINFO, H5F_ACC_RDWR);
|
|
H5File file2(FILE_OBJINFO, H5F_ACC_RDWR);
|
|
|
|
// Create two groups in the file
|
|
grp1 = file1.openGroup(GROUP1NAME);
|
|
grp2 = file2.openGroup(GROUP2NAME);
|
|
|
|
// Reset object info
|
|
HDmemset(&oinfo1, 0, sizeof(oinfo1));
|
|
HDmemset(&oinfo2, 0, sizeof(oinfo2));
|
|
|
|
// Query the info of two groups and verify that they have the same
|
|
// file number
|
|
grp1.getObjinfo(oinfo1);
|
|
grp2.getObjinfo(oinfo2);
|
|
verify_val(oinfo1.fileno, oinfo2.fileno, "file number from getObjinfo", __LINE__, __FILE__);
|
|
|
|
// Reset object info
|
|
HDmemset(&oinfo1, 0, sizeof(oinfo1));
|
|
HDmemset(&oinfo2, 0, sizeof(oinfo2));
|
|
|
|
file1.getObjinfo(GROUP1NAME, oinfo1);
|
|
file1.getObjinfo(GROUP2NAME, oinfo2);
|
|
verify_val(oinfo1.fileno, oinfo2.fileno, "file number from getObjectInfo", __LINE__, __FILE__);
|
|
|
|
// Close groups and files
|
|
grp1.close();
|
|
grp2.close();
|
|
file1.close();
|
|
file2.close();
|
|
|
|
PASSED();
|
|
} // end of try block
|
|
// catch all other exceptions
|
|
catch (Exception &E) {
|
|
cerr << " in Exception " << E.getCFuncName() << "detail: " << E.getCDetailMsg() << endl;
|
|
issue_fail_msg("test_getobjectinfo_same_file()", __LINE__, __FILE__, E.getCDetailMsg());
|
|
}
|
|
|
|
} // test_getobjectinfo_same_file
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: test_intermediate_groups
|
|
*
|
|
* Purpose Test that intermediate groups are created as specified by
|
|
* the property setting.
|
|
*
|
|
* Return None
|
|
*
|
|
* April, 2019
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
const H5std_string FILE_INTERGRPS("tobject_intergrps.h5");
|
|
const H5std_string GROUP10NAME("/group10");
|
|
const H5std_string GROUP11NAME("/group10/group11");
|
|
const H5std_string GROUP12NAME("/group10/group11/group12");
|
|
const H5std_string GROUP13NAME("/group10/group11/group12/group13");
|
|
const H5std_string GROUP14NAME("/group10/group11/group12/group13/group14");
|
|
const H5std_string GROUP14FROM13NAME("group14");
|
|
const H5std_string GROUP20NAME("/group20");
|
|
const H5std_string GROUP21NAME("/group20/group21");
|
|
const H5std_string GROUP22NAME("group21/group22");
|
|
const H5std_string GROUP22FULLNAME("/group20/group21/group22");
|
|
static void
|
|
test_intermediate_groups()
|
|
{
|
|
// Output message about test being performed
|
|
SUBTEST("Group::set/getCreateIntermediateGroup");
|
|
|
|
try {
|
|
// Create a new HDF5 file
|
|
H5File file(FILE_INTERGRPS, H5F_ACC_TRUNC);
|
|
|
|
// Create a link create property list and set the "create
|
|
// intermediate groups" flag
|
|
LinkCreatPropList lcpl;
|
|
lcpl.setCreateIntermediateGroup(true);
|
|
|
|
// Verify value of create missing groups flag
|
|
bool crt_int_grps = lcpl.getCreateIntermediateGroup();
|
|
verify_val(crt_int_grps, true, "LinkCreatPropList::getCreateIntermediateGroup", __LINE__, __FILE__);
|
|
|
|
// Create GROUP12NAME with creating missing groups
|
|
Group grp12(file.createGroup(GROUP12NAME, lcpl));
|
|
|
|
// Missing groups: GROUP10NAME and GROUP11NAME
|
|
|
|
// Create GROUP14NAME without the use of link create plist, should
|
|
// fail because group GROUP13NAME is missing
|
|
try {
|
|
Group grp14_nopl(file.createGroup(GROUP14NAME));
|
|
}
|
|
catch (FileIException &expected1) {
|
|
} // Failure is ignored
|
|
|
|
// Create GROUP14NAME with the flag to create missing groups set
|
|
// to FALSE, should fail because group GROUP13NAME is missing
|
|
|
|
// Reset flag to not create missing groups
|
|
lcpl.setCreateIntermediateGroup(false);
|
|
|
|
// Verify value of create missing groups flag
|
|
crt_int_grps = lcpl.getCreateIntermediateGroup();
|
|
verify_val(crt_int_grps, false, "LinkCreatPropList::getCreateIntermediateGroup", __LINE__, __FILE__);
|
|
|
|
try {
|
|
Group grp14_false(file.createGroup(GROUP14NAME, lcpl));
|
|
}
|
|
catch (FileIException &expected2) {
|
|
} // Failure is ignored
|
|
|
|
// Set the flag to create missing groups set to TRUE
|
|
lcpl.setCreateIntermediateGroup(true);
|
|
crt_int_grps = lcpl.getCreateIntermediateGroup();
|
|
verify_val(crt_int_grps, true, "LinkCreatPropList::getCreateIntermediateGroup", __LINE__, __FILE__);
|
|
|
|
// Create GROUP14NAME with the use of link create plist
|
|
Group grp14(file.createGroup(GROUP14NAME, lcpl));
|
|
|
|
// Missing groups: GROUP13NAME
|
|
|
|
// Create group GROUP20NAME
|
|
Group grp20(file.createGroup(GROUP20NAME));
|
|
|
|
// Create group GROUP22NAME with missing group GROUP21NAME
|
|
Group grp22(grp20.createGroup(GROUP22NAME, lcpl));
|
|
|
|
// Close groups and file
|
|
grp12.close();
|
|
grp14.close();
|
|
grp20.close();
|
|
grp22.close();
|
|
file.close();
|
|
|
|
// Reopen the file
|
|
file.openFile(FILE_INTERGRPS, H5F_ACC_RDWR);
|
|
|
|
// Open the missing groups and various combinations
|
|
Group grp10(file.openGroup(GROUP10NAME));
|
|
Group grp11(file.openGroup(GROUP11NAME));
|
|
Group grp13(file.openGroup(GROUP13NAME));
|
|
Group grp14from13(grp13.openGroup(GROUP14FROM13NAME));
|
|
Group grp21(file.openGroup(GROUP21NAME));
|
|
Group grp22fromfile(file.openGroup(GROUP22FULLNAME));
|
|
|
|
PASSED();
|
|
} // end of try block
|
|
// catch all other exceptions
|
|
catch (Exception &E) {
|
|
cerr << " in Exception " << E.getCFuncName() << "detail: " << E.getCDetailMsg() << endl;
|
|
issue_fail_msg("test_intermediate_groups()", __LINE__, __FILE__, E.getCDetailMsg());
|
|
}
|
|
|
|
} // test_intermediate_groups
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: test_object
|
|
*
|
|
* Purpose Tests HDF5 object related functionality
|
|
*
|
|
* Return Success: 0
|
|
* Failure: -1
|
|
*
|
|
* March 4, 2014
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
extern "C" void
|
|
test_object()
|
|
{
|
|
// Output message about test being performed
|
|
MESSAGE(5, ("Testing Object Functions\n"));
|
|
|
|
test_get_objname(); // Test get object name from groups/datasets
|
|
test_existance(); // Test check for object existance
|
|
test_get_objname_ontypes(); // Test get object name from types
|
|
test_get_objtype(); // Test get object type
|
|
test_open_object_header(); // Test object header functions (H5O)
|
|
test_getobjectinfo_same_file(); // Test object info in same file
|
|
test_intermediate_groups(); // Test intermediate group property
|
|
|
|
} // test_object
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: cleanup_objects
|
|
*
|
|
* Purpose Cleanup temporary test files
|
|
*
|
|
* Return None
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
extern "C" void
|
|
cleanup_object()
|
|
{
|
|
HDremove(FILE_OBJECTS.c_str());
|
|
} // cleanup_objects
|