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8008294578b5a133907d7ab1dd20e34735c54535
hdf5/java/test/TestH5Pfapls3.java
Larry Knox 8008294578 Squashed commit of the following: 
Merge changes from update_merged_S3_HDFS branch into develop.

commit d5034315aea88629929ac0c9c59ebfafd5f21a31
Merge: 9c48823 d3fdcd8
Author: Larry Knox <lrknox@hdfgroup.org>
Date:   Thu Jul 25 08:24:53 2019 -0500

    Merge branch 'develop' into update_merged_S3_HDFS
2019-07-25 11:47:12 -05:00

407 lines
14 KiB
Java
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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
package test;
import static org.junit.Assert.assertEquals;
import static org.junit.Assert.assertFalse;
import static org.junit.Assert.assertNull;
import static org.junit.Assert.assertTrue;
import static org.junit.Assert.fail;
import java.io.File;
import java.text.DecimalFormat;
import java.text.NumberFormat;
import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
import hdf.hdf5lib.exceptions.HDF5Exception;
import hdf.hdf5lib.exceptions.HDF5LibraryException;
import hdf.hdf5lib.exceptions.HDF5PropertyListInterfaceException;
import hdf.hdf5lib.structs.H5AC_cache_config_t;
import hdf.hdf5lib.structs.H5FD_hdfs_fapl_t;
import hdf.hdf5lib.structs.H5FD_ros3_fapl_t;
import org.junit.After;
import org.junit.Before;
import org.junit.Rule;
import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5Pfapls3 {
@Rule public TestName testname = new TestName();
private static final String H5_FILE = "testPf.h5";
private static final String H5_LOG_FILE = "testPf.log";
private static final String H5_FAMILY_FILE = "testPf%05d";
private static final String H5_MULTI_FILE = "testPfmulti";
private static char MULTI_LETTERS[] = {'X','s','b','r','g','l','o'};
private static final int DIM_X = 4;
private static final int DIM_Y = 6;
private static final int DIMF_X = 12;
private static final int DIMF_Y = 18;
long H5fid = -1;
long H5dsid = -1;
long H5did = -1;
long H5Fdsid = -1;
long H5Fdid = -1;
long[] H5dims = { DIM_X, DIM_Y };
long fapl_id = -1;
long plapl_id = -1;
long dapl_id = -1;
long plist_id = -1;
long btplist_id = -1;
long[] H5Fdims = { DIMF_X, DIMF_Y };
double windchillF[][] =
{{36.0, 31.0, 25.0, 19.0, 13.0, 7.0, 1.0, -5.0, -11.0, -16.0, -22.0, -28.0, -34.0, -40.0, -46.0, -52.0, -57.0, -63.0},
{34.0, 27.0, 21.0, 15.0, 9.0, 3.0, -4.0, -10.0, -16.0, -22.0, -28.0, -35.0, -41.0, -47.0, -53.0, -59.0, -66.0, -72.0},
{32.0, 25.0, 19.0, 13.0, 6.0, 0.0, -7.0, -13.0, -19.0, -26.0, -32.0, -39.0, -45.0, -51.0, -58.0, -64.0, -71.0, -77.0},
{30.0, 24.0, 17.0, 11.0, 4.0, -2.0, -9.0, -15.0, -22.0, -29.0, -35.0, -42.0, -48.0, -55.0, -61.0, -68.0, -74.0, -81.0},
{29.0, 23.0, 16.0, 9.0, 3.0, -4.0, -11.0, -17.0, -24.0, -31.0, -37.0, -44.0, -51.0, -58.0, -64.0, -71.0, -78.0, -84.0},
{28.0, 22.0, 15.0, 8.0, 1.0, -5.0, -12.0, -19.0, -26.0, -33.0, -39.0, -46.0, -53.0, -60.0, -67.0, -73.0, -80.0, -87.0},
{28.0, 21.0, 14.0, 7.0, 0.0, -7.0, -14.0, -21.0, -27.0, -34.0, -41.0, -48.0, -55.0, -62.0, -69.0, -76.0, -82.0, -89.0},
{27.0, 20.0, 13.0, 6.0, -1.0, -8.0, -15.0, -22.0, -29.0, -36.0, -43.0, -50.0, -57.0, -64.0, -71.0, -78.0, -84.0, -91.0},
{26.0, 19.0, 12.0, 5.0, -2.0, -9.0, -16.0, -23.0, -30.0, -37.0, -44.0, -51.0, -58.0, -65.0, -72.0, -79.0, -86.0, -93.0},
{26.0, 19.0, 12.0, 4.0, -3.0, -10.0, -17.0, -24.0, -31.0, -38.0, -45.0, -52.0, -60.0, -67.0, -74.0, -81.0, -88.0, -95.0},
{25.0, 18.0, 11.0, 4.0, -3.0, -11.0, -18.0, -25.0, -32.0, -39.0, -46.0, -54.0, -61.0, -68.0, -75.0, -82.0, -89.0, -97.0},
{25.0, 17.0, 10.0, 3.0, -4.0, -11.0, -19.0, -26.0, -33.0, -40.0, -48.0, -55.0, -62.0, -69.0, -76.0, -84.0, -91.0, -98.0}
};
private final void _deleteFile(String filename) {
File file = null;
try {
file = new File(filename);
}
catch (Throwable err) {}
if (file.exists()) {
try {file.delete();} catch (SecurityException e) {}
}
}
private final void _deleteLogFile() {
File file = null;
try {
file = new File(H5_LOG_FILE);
}
catch (Throwable err) {}
if (file.exists()) {
try {file.delete();} catch (SecurityException e) {}
}
}
private final void _deleteFamilyFile() {
File file = null;
for(int indx = 0; ;indx++) {
java.text.DecimalFormat myFormat = new java.text.DecimalFormat("00000");
try {
file = new File("test"+myFormat.format(new Integer(indx))+".h5");
}
catch (Throwable err) {}
if (file.exists()) {
try {file.delete();} catch (SecurityException e) {}
}
else
return;
}
}
private final void _deleteMultiFile() {
File file = null;
for(int indx = 1;indx<7;indx++) {
try {
file = new File(H5_MULTI_FILE+"-"+MULTI_LETTERS[indx]+".h5");
}
catch (Throwable err) {}
if (file.exists()) {
try {file.delete();} catch (SecurityException e) {}
}
}
}
private final long _createDataset(long fid, long dsid, String name, long dapl) {
long did = -1;
try {
did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32BE, dsid,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, dapl);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Dcreate: " + err);
}
assertTrue("TestH5Pfapl._createDataset: ", did > 0);
return did;
}
private final void _createFloatDataset() {
try {
H5Fdsid = H5.H5Screate_simple(2, H5Fdims, null);
H5Fdid = H5.H5Dcreate(H5fid, "dsfloat", HDF5Constants.H5T_NATIVE_FLOAT, H5Fdsid,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Dcreate: " + err);
}
assertTrue("TestH5Pfapl._createFloatDataset: ", H5Fdid > 0);
try {
H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
}
catch (Throwable err) {
err.printStackTrace();
}
}
private final void _createH5multiFileDS() {
try {
H5did = _createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("TestH5Pfapl.createH5file: " + err);
}
assertTrue("TestH5Pfapl.createH5file: _createDataset: ", H5did > 0);
try {
H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
}
catch (Throwable err) {
err.printStackTrace();
}
}
private final void _createH5File(long fapl) {
try {
H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC,
HDF5Constants.H5P_DEFAULT, fapl);
H5dsid = H5.H5Screate_simple(2, H5dims, null);
H5did = _createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("TestH5Pfapl.createH5file: " + err);
}
assertTrue("TestH5Pfapl.createH5file: H5.H5Fcreate: ", H5fid > 0);
assertTrue("TestH5Pfapl.createH5file: H5.H5Screate_simple: ", H5dsid > 0);
assertTrue("TestH5Pfapl.createH5file: _createDataset: ", H5did > 0);
try {
H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
}
catch (Throwable err) {
err.printStackTrace();
}
}
private final void _createH5familyFile(long fapl) {
try {
H5fid = H5.H5Fcreate(H5_FAMILY_FILE+".h5", HDF5Constants.H5F_ACC_TRUNC,
HDF5Constants.H5P_DEFAULT, fapl);
H5dsid = H5.H5Screate_simple(2, H5dims, null);
H5did = _createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("TestH5Pfapl.createH5file: " + err);
}
assertTrue("TestH5Pfapl.createH5file: H5.H5Fcreate: ", H5fid > 0);
assertTrue("TestH5Pfapl.createH5file: H5.H5Screate_simple: ", H5dsid > 0);
assertTrue("TestH5Pfapl.createH5file: _createDataset: ", H5did > 0);
try {
H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
}
catch (Throwable err) {
err.printStackTrace();
}
}
private final void _createH5multiFile(long fapl) {
try {
H5fid = H5.H5Fcreate(H5_MULTI_FILE, HDF5Constants.H5F_ACC_TRUNC,
HDF5Constants.H5P_DEFAULT, fapl);
H5dsid = H5.H5Screate_simple(2, H5dims, null);
}
catch (Throwable err) {
err.printStackTrace();
fail("TestH5Pfapl.createH5file: " + err);
}
assertTrue("TestH5Pfapl.createH5file: H5.H5Fcreate: ", H5fid > 0);
assertTrue("TestH5Pfapl.createH5file: H5.H5Screate_simple: ", H5dsid > 0);
try {
H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
}
catch (Throwable err) {
err.printStackTrace();
}
}
public void deleteH5file() {
_deleteFile(H5_FILE);
}
public void deleteH5familyfile() {
_deleteFamilyFile();
}
public void deleteH5multifile() {
_deleteMultiFile();
}
@Before
public void createFileAccess()
throws NullPointerException, HDF5Exception {
assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0);
System.out.print(testname.getMethodName());
try {
fapl_id = H5.H5Pcreate(HDF5Constants.H5P_FILE_ACCESS);
}
catch (Throwable err) {
err.printStackTrace();
fail("TestH5Pfapl.createFileAccess: " + err);
}
assertTrue(fapl_id > 0);
try {
plapl_id = H5.H5Pcreate(HDF5Constants.H5P_LINK_ACCESS);
}
catch (Throwable err) {
err.printStackTrace();
fail("TestH5Pfapl.createFileAccess: " + err);
}
assertTrue(plapl_id > 0);
try {
plist_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_XFER);
btplist_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_XFER);
dapl_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_ACCESS);
}
catch (Throwable err) {
err.printStackTrace();
fail("TestH5Pfapl.createFileAccess: " + err);
}
assertTrue(plist_id > 0);
assertTrue(btplist_id > 0);
assertTrue(dapl_id > 0);
}
@After
public void deleteFileAccess() throws HDF5LibraryException {
if (fapl_id > 0)
try {H5.H5Pclose(fapl_id);} catch (Exception ex) {}
if (plapl_id > 0)
try {H5.H5Pclose(plapl_id);} catch (Exception ex) {}
if (dapl_id > 0)
try {H5.H5Pclose(dapl_id);} catch (Exception ex) {}
if (plist_id > 0)
try {H5.H5Pclose(plist_id);} catch (Exception ex) {}
if (btplist_id > 0)
try {H5.H5Pclose(btplist_id);} catch (Exception ex) {}
if (H5Fdsid > 0)
try {H5.H5Sclose(H5Fdsid);} catch (Exception ex) {}
if (H5Fdid > 0)
try {H5.H5Dclose(H5Fdid);} catch (Exception ex) {}
if (H5dsid > 0)
try {H5.H5Sclose(H5dsid);} catch (Exception ex) {}
if (H5did > 0)
try {H5.H5Dclose(H5did);} catch (Exception ex) {}
if (H5fid > 0)
try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
System.out.println();
}
@Test
public void testH5Pset_fapl_ros3()
throws Exception
{
if (HDF5Constants.H5FD_ROS3 < 0)
return;
final H5FD_ros3_fapl_t config = new H5FD_ros3_fapl_t();
assertEquals("Default fapl has unexpected contents",
new H5FD_ros3_fapl_t("", "", ""),
config);
H5.H5Pset_fapl_ros3(fapl_id, config);
assertEquals("driver types don't match",
HDF5Constants.H5FD_ROS3,
H5.H5Pget_driver(fapl_id));
/* get_fapl_ros3 can throw exception in error cases */
H5FD_ros3_fapl_t copy = H5.H5Pget_fapl_ros3(fapl_id);
assertEquals("contents of fapl set and get don't match",
new H5FD_ros3_fapl_t("", "", ""),
copy);
}
@Test(expected = HDF5LibraryException.class)
public void testH5Pget_fapl_ros3_invalid_fapl_id()
throws Exception
{
if (HDF5Constants.H5FD_ROS3 < 0)
throw new HDF5LibraryException("skip");
H5FD_ros3_fapl_t fails = H5.H5Pget_fapl_ros3(-1);
}
@Test(expected = HDF5LibraryException.class)
public void testH5Pget_fapl_ros3_fapl_id_of_wrong_driver_type()
throws Exception
{
if (HDF5Constants.H5FD_ROS3 < 0)
throw new HDF5LibraryException("skip");
if (HDF5Constants.H5FD_SEC2 < 0 )
throw new HDF5LibraryException("skip");
/* TODO: for now, test against a sec2 fapl only */
H5.H5Pset_fapl_sec2(fapl_id);
assertEquals("fapl_id was not set properly",
HDF5Constants.H5FD_SEC2,
H5.H5Pget_driver(fapl_id));
H5FD_ros3_fapl_t fails = H5.H5Pget_fapl_ros3(fapl_id);
}
@Test
public void testH5Pset_fapl_ros3_specified()
throws Exception
{
if (HDF5Constants.H5FD_ROS3 < 0)
return;
String region = "us-east-1";
String acc_id = "my_access_id";
String acc_key = "my_access_key";
final H5FD_ros3_fapl_t config = new H5FD_ros3_fapl_t(
region,
acc_id,
acc_key);
H5.H5Pset_fapl_ros3(fapl_id, config);
assertEquals("driver types don't match",
HDF5Constants.H5FD_ROS3,
H5.H5Pget_driver(fapl_id));
H5FD_ros3_fapl_t copy = H5.H5Pget_fapl_ros3(fapl_id);
assertEquals("contents of fapl set and get don't match",
new H5FD_ros3_fapl_t(region, acc_id, acc_key),
copy);
}
}
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