370 lines
13 KiB
Plaintext
370 lines
13 KiB
Plaintext
HDF5 version 1.10.8-1 currently under development
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================================================================================
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INTRODUCTION
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This document describes the differences between this release and the previous
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HDF5 release. It contains information on the platforms tested and known
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problems in this release. For more details check the HISTORY*.txt files in the
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HDF5 source.
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Note that documentation in the links below will be updated at the time of each
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final release.
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Links to HDF5 documentation can be found on The HDF5 web page:
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https://portal.hdfgroup.org/display/HDF5/HDF5
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The official HDF5 releases can be obtained from:
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https://www.hdfgroup.org/downloads/hdf5/
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Changes from Release to Release and New Features in the HDF5-1.10.x release series
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can be found at:
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https://portal.hdfgroup.org/display/HDF5/HDF5+Application+Developer%27s+Guide
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If you have any questions or comments, please send them to the HDF Help Desk:
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help@hdfgroup.org
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CONTENTS
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- New Features
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- Support for new platforms and languages
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- Bug Fixes since HDF5-1.10.6
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- Supported Platforms
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- Tested Configuration Features Summary
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- More Tested Platforms
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- Known Problems
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- CMake vs. Autotools installations
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New Features
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============
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Configuration:
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-------------
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- Added CMake option to format source files
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HDF5_ENABLE_FORMATTERS option will enable creation of targets using the
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pattern - HDF5_*_SRC_FORMAT - where * corresponds to the source folder
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or tool folder. All sources can be formatted by executing the format target;
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make format
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(ADB - 2020/09/24)
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Library:
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--------
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-
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Fortran Library:
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----------------
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-
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C++ Library:
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------------
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-
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Java Library:
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----------------
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-
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Tools:
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------
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-
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High-Level APIs:
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---------------
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-
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C Packet Table API
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------------------
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Internal header file
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--------------------
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Documentation
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-------------
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Support for new platforms, languages and compilers.
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=======================================
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-
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Bug Fixes since HDF5-1.10.6 release
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==================================
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Library
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-------
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-
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Java Library:
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----------------
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Configuration
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-------------
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Performance
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-------------
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Fortran
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--------
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-
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Tools
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-----
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-
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High-Level APIs:
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------
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-
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Fortran High-Level APIs:
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------
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-
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Documentation
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-------------
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-
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F90 APIs
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--------
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-
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C++ APIs
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--------
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-
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Testing
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-------
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-
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Supported Platforms
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===================
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Linux 3.10.0-1127.10.1.el7 gcc (GCC) 4.8.5 20150623 (Red Hat 4.8.5-39)
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#1 SMP ppc64 GNU/Linux g++ (GCC) 4.8.5 20150623 (Red Hat 4.8.5-39)
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(echidna) GNU Fortran (GCC) 4.8.5 20150623 (Red Hat 4.8.5-39)
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Linux 2.6.32-754.31.1.el6 IBM XL C/C++ V13.1
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#1 SMP ppc64 GNU/Linux IBM XL Fortran V15.1
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(ostrich)
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Linux 3.10.0-327.18.2.el7 GNU C (gcc), Fortran (gfortran), C++ (g++)
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#1 SMP x86_64 GNU/Linux compilers:
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(jelly/kituo/moohan) Version 4.8.5 20150623 (Red Hat 4.8.5-4)
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Version 4.9.3, Version 5.3.0, Version 6.3.0,
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Version 7.2.0, Version 8.3.0, Version 9.1.0
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Intel(R) C (icc), C++ (icpc), Fortran (icc)
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compilers:
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Version 17.0.0.098 Build 20160721
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MPICH 3.3 compiled with GCC 7.2.0
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OpenMPI 4.0.0 compiled with GCC 7.2.0
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SunOS 5.11 11.4.5.12.5.0 Sun C 5.15 SunOS_sparc 2017/05/30
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32- and 64-bit Studio 12.6 Fortran 95 8.8 SunOS_sparc 2017/05/30
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(hedgehog) Sun C++ 5.15 SunOS_sparc 2017/05/30
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Windows 7 x64 Visual Studio 2015 w/ Intel C, Fortran 2018 (cmake)
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Windows 10 x64 Visual Studio 2015 w/ Intel Fortran 18 (cmake)
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Visual Studio 2017 w/ Intel Fortran 19 (cmake)
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Visual Studio 2019 w/ Intel Fortran 19 (cmake)
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Visual Studio 2019 w/ MSMPI 10.1 (cmake)
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macOS Mojave 10.14.6 Apple LLVM version 10.0.1 (clang-1001.0.46.4)
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64-bit gfortran GNU Fortran (GCC) 6.3.0
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(swallow) Intel icc/icpc/ifort version 19.0.4.233 20190416
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Tested Configuration Features Summary
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=====================================
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In the tables below
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y = tested
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n = not tested in this release
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C = Cluster
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W = Workstation
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x = not working in this release
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dna = does not apply
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( ) = footnote appears below second table
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<blank> = testing incomplete on this feature or platform
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Platform C F90/ F90 C++ zlib SZIP
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parallel F2003 parallel
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Solaris2.11 32-bit n y/y n y y y
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Solaris2.11 64-bit n y/n n y y y
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Windows 7 x64 y y/y y y y y
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Windows 10 y y/y n y y y
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Windows 10 x64 y y/y n y y y
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Mac OS X El Capitan 10.11.6 64-bit n y/y n y y y
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Mac OS Sierra 10.12.6 64-bit n y/y n y y y
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Mac OS X High Sierra 10.13.6 64-bit n y/y n y y y
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Mac OS X Mojave 10.14.6 64-bit n y/y n y y y
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CentOS 7.2 Linux 2.6.32 x86_64 PGI n y/y n y y y
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CentOS 7.2 Linux 2.6.32 x86_64 GNU y y/y y y y y
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CentOS 7.2 Linux 2.6.32 x86_64 Intel n y/y n y y y
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Linux 2.6.32-573.18.1.el6.ppc64 n y/y n y y y
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Platform Shared Shared Shared Thread-
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C libs F90 libs C++ libs safe
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Solaris2.11 32-bit y y y y
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Solaris2.11 64-bit y y y y
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Windows 7 x64 y y y y
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Windows 10 y y y y
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Windows 10 x64 y y y y
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Mac OS X El Capitan 10.11.6 64-bit y n y y
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Mac OS Sierra 10.12.6 64-bit y n y y
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Mac OS X High Sierra 10.13.6 64-bit y n y y
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Mac OS X Mojave 10.14.6 64-bit y n y y
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CentOS 7.2 Linux 2.6.32 x86_64 PGI y y y n
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CentOS 7.2 Linux 2.6.32 x86_64 GNU y y y y
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CentOS 7.2 Linux 2.6.32 x86_64 Intel y y y n
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Linux 2.6.32-573.18.1.el6.ppc64 y y y n
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Compiler versions for each platform are listed in the preceding
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"Supported Platforms" table.
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More Tested Platforms
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=====================
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The following platforms are not supported but have been tested for this release.
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Linux 2.6.32-573.22.1.el6 GNU C (gcc), Fortran (gfortran), C++ (g++)
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#1 SMP x86_64 GNU/Linux compilers:
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(platypus) Version 4.4.7 20120313
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Version 4.9.3, 5.3.0, 6.2.0
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PGI C, Fortran, C++ for 64-bit target on
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x86-64;
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Version 19.10-0
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MPICH 3.1.4 compiled with GCC 4.9.3
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Linux 2.6.32-754.31.1.el6 gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-18)
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#1 SMP ppc64 GNU/Linux g++ (GCC) 4.4.7 20120313 (Red Hat 4.4.7-18)
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(ostrich) GNU Fortran (GCC) 4.4.7 20120313 (Red Hat 4.4.7-18)
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Linux 3.10.0-327.18.2.el7 GNU C (gcc) and C++ (g++) compilers
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#1 SMP x86_64 GNU/Linux Version 4.8.5 20150623 (Red Hat 4.8.5-4)
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(jelly) with NAG Fortran Compiler Release 6.1(Tozai)
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GCC Version 7.1.0
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OpenMPI 2.1.6-GCC-7.2.0-2.29,
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3.1.3-GCC-7.2.0-2.29
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Intel(R) C (icc) and C++ (icpc) compilers
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Version 17.0.0.098 Build 20160721
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with NAG Fortran Compiler Release 6.1(Tozai)
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Linux 3.10.0-327.10.1.el7 MPICH 3.1.4 compiled with GCC 4.9.3
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#1 SMP x86_64 GNU/Linux
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(moohan)
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Linux-3.10.0-1127.0.0.1chaos openmpi-4.0.0
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#1 SMP x86_64 GNU/Linux clang/3.9.0, 8.0.1
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(quartz) gcc/7.3.0, 8.1.0
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intel/16.0.4
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Linux-4.14.0-115.10.1.1 spectrum-mpi/rolling-release
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#1 SMP ppc64le GNU/Linux clang/coral-2018.08.08
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(lassen) gcc/7.3.1
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xl/2019.02.07
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Linux-4.12.14-150.52-default cray-mpich/7.7.10
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#1 SMP x86_64 GNU/Linux gcc/7.3.0, 8.2.0
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(cori) intel/19.0.3
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Linux-4.4.180-94.107-default cray-mpich/7.7.6
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# 1SMP x86_64 GNU/Linux gcc/7.2.0, 8.2.0
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(mutrino) intel/17.0.4, 18.0.2, 19.0.4
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Fedora 32 5.7.15-200.fc32.x86_64 Clang version 10.0.0 (Fedora 10.0.0-2.fc32)
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#1 SMP x86_64 GNU/Linux GNU gcc (GCC) 10.2.1 20200723 (Red Hat 10.2.1-1)
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GNU Fortran (GCC) 10.2.1 20200723 (Red Hat 10.2.1)
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(cmake and autotools)
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Mac OS X El Capitan 10.11.6 Apple clang version 7.3.0 from Xcode 7.3
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64-bit gfortran GNU Fortran (GCC) 5.2.0
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(osx1011test) Intel icc/icpc/ifort version 16.0.2
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macOS Sierra 10.12.6 Apple LLVM version 9.0.0 (clang-900.39.2)
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64-bit gfortran GNU Fortran (GCC) 7.4.0
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(kite) Intel icc/icpc/ifort version 17.0.2
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macOS High Sierra 10.13.6 Apple LLVM version 10.0.0 (clang-1000.10.44.4)
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64-bit gfortran GNU Fortran (GCC) 6.3.0
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(bear) Intel icc/icpc/ifort version 19.0.4.233 20190416
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SunOS 5.11 11.3 Sun C 5.15 SunOS_sparc
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32- and 64-bit Sun Fortran 95 8.8 SunOS_sparc
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(emu)
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Known Problems
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==============
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CMake files do not behave correctly with paths containing spaces.
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Do not use spaces in paths because the required escaping for handling spaces
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results in very complex and fragile build files.
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ADB - 2019/05/07
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At present, metadata cache images may not be generated by parallel
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applications. Parallel applications can read files with metadata cache
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images, but since this is a collective operation, a deadlock is possible
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if one or more processes do not participate.
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Two tests fail attempting collective writes with OpenMPI 3.0.0/GCC-7.2.0-2.29:
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testphdf5 (ecdsetw, selnone, cchunk1, cchunk3, cchunk4, and actualio)
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t_shapesame (sscontig2)
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CPP ptable test fails on both VS2017 and VS2019 with Intel compiler, JIRA
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issue: HDFFV-10628. This test will pass with VS2015 with Intel compiler.
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Known problems in previous releases can be found in the HISTORY*.txt files
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in the HDF5 source. Please report any new problems found to
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help@hdfgroup.org.
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CMake vs. Autotools installations
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=================================
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While both build systems produce similar results, there are differences.
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Each system produces the same set of folders on linux (only CMake works
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on standard Windows); bin, include, lib and share. Autotools places the
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COPYING and RELEASE.txt file in the root folder, CMake places them in
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the share folder.
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The bin folder contains the tools and the build scripts. Additionally, CMake
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creates dynamic versions of the tools with the suffix "-shared". Autotools
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installs one set of tools depending on the "--enable-shared" configuration
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option.
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build scripts
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-------------
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Autotools: h5c++, h5cc, h5fc
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CMake: h5c++, h5cc, h5hlc++, h5hlcc
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The include folder holds the header files and the fortran mod files. CMake
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the share folder.
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The bin folder contains the tools and the build scripts. Additionally, CMake
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places the fortran mod files into separate shared and static subfolders,
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while Autotools places one set of mod files into the include folder. Because
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CMake produces a tools library, the header files for tools will appear in
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the include folder.
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The lib folder contains the library files, and CMake adds the pkgconfig
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subfolder with the hdf5*.pc files used by the bin/build scripts created by
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the CMake build. CMake separates the C interface code from the fortran code by
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creating C-stub libraries for each Fortran library. In addition, only CMake
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installs the tools library. The names of the szip libraries are different
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between the build systems.
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The share folder will have the most differences because CMake builds include
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a number of CMake specific files for support of CMake's find_package and support
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for the HDF5 Examples CMake project.
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