Files
hdf5/tools/lib/h5trav.h
Larry Knox b42635ad88 Hdf5 merge issue 458 v110 (#465)
* close #195. (#196)

* Update HDF5PluginMacros.cmake

* Update HDF5PluginMacros.cmake

* Modify temporary rpath for testing in java example scripts. (#230)

* Fix undefined left shifting of negative numbers (#338)

Undefined Bahavior Sanitizer errored here about left shifting negative numbers.

* Update license url (#332)

* Modify temporary rpath for testing in java example scripts.

* Update URL in source file Copyright headers for web copy of COPYING
file - src and test directories.

* Applied clang-tidy readability-non-const-parameter warning fixes auto… (#429)

* Automatically applied clang-tidy readability-avoid-const-params-in-decls fixes

Removes useless const declarations.

* Fixed most readability-non-const-parameter warnings

These changes were made automatically by clang-tidy, but I manually reverted the changes related to the H5Z_func_t signature.

* Reformat source with clang v10.0.1.

Co-authored-by: Larry Knox <lrknox@hdfgroup.org>

* Added C++11 override keyword where appropriate (#433)

Added H5_OVERRIDE macro for compatibility with both C++11 and older.

* Various clang tidy warning fixes (#448)

* Fixed clang-tidy bugprone-reserved-identifier warnings

* Fixed clang-tidy bugprone-assert-side-effect warnings

* Fixed clang-tidy bugprone-copy-constructor-init warning

* Fixed clang-tidy readability-redundant-preprocessor warning

For error_test.c the removed code was already dead, because it was in the else of an `#if H5_USE_16_API` block.

Based on H5Location.h, I think p_get_ref_obj_type was meant to be in `#ifndef DOXYGEN_SHOULD_SKIP_THIS` and an `#endif` was missing.  Similarly, in the header, getObjTypeByIdx is only in H5_NO_DEPRECATED_SYMBOLS, not DOXYGEN_SHOULD_SKIP_THIS.

* Fixed clang-tidy readability-redundant-string-init warnings

* Fixed some clang-tidy performance-type-promotion-in-math-fn warnings

* Fixed clang-tidy performance-unnecessary-value-param warnings

* Reformat source with clang v10.0.1.

Co-authored-by: Larry Knox <lrknox@hdfgroup.org>

* Removed checks/workarounds for pre-C++89 compatibility (#449)

After 30+ years, just assume that the following exist:
- extension-less includes
- namespaces
- std::
- static_cast
- bool

* Fixed all clang-tidy bugprone-suspicious-string-compare warnings (#451)

* Fixed all clang-tidy bugprone-suspicious-string-compare warnings

This change was generated entirely by clang-tidy itself.

* Reformat code with clang v10.0.1.

Co-authored-by: Larry Knox <lrknox@hdfgroup.org>

* Fix clang-tidy suspicious string compare in H5A.c missed in merge.

Co-authored-by: H. Joe Lee <hyoklee@hdfgroup.org>
Co-authored-by: Sean McBride <sean@rogue-research.com>
2021-03-12 11:58:10 -06:00

193 lines
7.9 KiB
C

/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://www.hdfgroup.org/licenses. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#ifndef H5TRAV_H
#define H5TRAV_H
#include "hdf5.h"
/* Typedefs for visiting objects */
typedef herr_t (*h5trav_obj_func_t)(const char *path_name, const H5O_info_t *oinfo, const char *first_seen,
void *udata);
typedef herr_t (*h5trav_lnk_func_t)(const char *path_name, const H5L_info_t *linfo, void *udata);
/*-------------------------------------------------------------------------
* public enum to specify type of an object
* the TYPE can be:
* H5TRAV_TYPE_UNKNOWN = -1,
* H5TRAV_TYPE_GROUP, Object is a group
* H5TRAV_TYPE_DATASET, Object is a dataset
* H5TRAV_TYPE_TYPE, Object is a named datatype
* H5TRAV_TYPE_LINK, Object is a symbolic link
* H5TRAV_TYPE_UDLINK, Object is a user-defined link
*-------------------------------------------------------------------------
*/
typedef enum {
H5TRAV_TYPE_UNKNOWN = -1, /* Unknown object type */
H5TRAV_TYPE_GROUP, /* Object is a group */
H5TRAV_TYPE_DATASET, /* Object is a dataset */
H5TRAV_TYPE_NAMED_DATATYPE, /* Object is a named datatype */
H5TRAV_TYPE_LINK, /* Object is a symbolic link */
H5TRAV_TYPE_UDLINK /* Object is a user-defined link */
} h5trav_type_t;
/*-------------------------------------------------------------------------
* public struct to store name and type of an object
*-------------------------------------------------------------------------
*/
/* Struct to keep track of symbolic link targets visited.
* Functions: symlink_visit_add() and symlink_is_visited()
*/
typedef struct symlink_trav_path_t {
H5L_type_t type;
char * file;
char * path;
} symlink_trav_path_t;
typedef struct symlink_trav_t {
size_t nalloc;
size_t nused;
symlink_trav_path_t *objs;
hbool_t dangle_link;
} symlink_trav_t;
typedef struct trav_path_t {
char * path;
h5trav_type_t type;
haddr_t objno; /* object address */
unsigned long fileno; /* File number that object is located in */
} trav_path_t;
typedef struct trav_info_t {
size_t nalloc;
size_t nused;
const char * fname;
hid_t fid; /* File ID */
trav_path_t * paths;
symlink_trav_t symlink_visited; /* already visited symbolic links */
void * opts; /* optional data passing */
} trav_info_t;
/*-------------------------------------------------------------------------
* keep record of hard link information
*-------------------------------------------------------------------------
*/
typedef struct trav_link_t {
char *new_name;
} trav_link_t;
/*-------------------------------------------------------------------------
* struct to store basic info needed for the h5trav table traversal algorythm
*-------------------------------------------------------------------------
*/
typedef struct trav_obj_t {
haddr_t objno; /* object address */
unsigned flags[2]; /* h5diff.object is present or not in both files*/
hbool_t is_same_trgobj; /* same target object? no need to compare */
char * name; /* name */
h5trav_type_t type; /* type of object */
trav_link_t * links; /* array of possible link names */
size_t sizelinks; /* size of links array */
size_t nlinks; /* number of links */
} trav_obj_t;
/*-------------------------------------------------------------------------
* private struct that stores all objects
*-------------------------------------------------------------------------
*/
typedef struct trav_table_t {
size_t size;
size_t nobjs;
trav_obj_t *objs;
} trav_table_t;
/*-------------------------------------------------------------------------
* public functions
*-------------------------------------------------------------------------
*/
#ifdef __cplusplus
extern "C" {
#endif
/*-------------------------------------------------------------------------
* "h5trav general" public functions
*-------------------------------------------------------------------------
*/
H5TOOLS_DLL void h5trav_set_index(H5_index_t print_index_by, H5_iter_order_t print_index_order);
H5TOOLS_DLL int h5trav_visit(hid_t file_id, const char *grp_name, hbool_t visit_start, hbool_t recurse,
h5trav_obj_func_t visit_obj, h5trav_lnk_func_t visit_lnk, void *udata,
unsigned fields);
H5TOOLS_DLL herr_t symlink_visit_add(symlink_trav_t *visited, H5L_type_t type, const char *file,
const char *path);
H5TOOLS_DLL hbool_t symlink_is_visited(symlink_trav_t *visited, H5L_type_t type, const char *file,
const char *path);
/*-------------------------------------------------------------------------
* "h5trav info" public functions
*-------------------------------------------------------------------------
*/
H5TOOLS_DLL int h5trav_getinfo(hid_t file_id, trav_info_t *info);
H5TOOLS_DLL ssize_t h5trav_getindex(const trav_info_t *info, const char *obj);
H5TOOLS_DLL int trav_info_visit_obj(const char *path, const H5O_info_t *oinfo, const char *already_visited,
void *udata);
H5TOOLS_DLL int trav_info_visit_lnk(const char *path, const H5L_info_t *linfo, void *udata);
/*-------------------------------------------------------------------------
* "h5trav table" public functions
*-------------------------------------------------------------------------
*/
H5TOOLS_DLL int h5trav_gettable(hid_t fid, trav_table_t *travt);
H5TOOLS_DLL int h5trav_getindext(const char *obj, const trav_table_t *travt);
/*-------------------------------------------------------------------------
* "h5trav print" public functions
*-------------------------------------------------------------------------
*/
H5TOOLS_DLL int h5trav_print(hid_t fid);
H5TOOLS_DLL void h5trav_set_verbose(int print_verbose);
#ifdef __cplusplus
}
#endif
/*-------------------------------------------------------------------------
* info private functions
*-------------------------------------------------------------------------
*/
H5TOOLS_DLL void trav_info_init(const char *filename, hid_t fileid, trav_info_t **info);
H5TOOLS_DLL void trav_info_free(trav_info_t *info);
H5TOOLS_DLL void trav_info_add(trav_info_t *info, const char *path, h5trav_type_t obj_type);
H5TOOLS_DLL void trav_fileinfo_add(trav_info_t *info, hid_t loc_id);
/*-------------------------------------------------------------------------
* table private functions
*-------------------------------------------------------------------------
*/
H5TOOLS_DLL void trav_table_init(trav_table_t **table);
H5TOOLS_DLL void trav_table_free(trav_table_t *table);
H5TOOLS_DLL void trav_table_addflags(const unsigned *flags, char *objname, h5trav_type_t type,
trav_table_t *table);
#endif /* H5TRAV_H */