Files
hdf5/java/test/TestH5Sbasic.java
Allen Byrne 216bff5778 #386 copyright corrections for java folder (#389)
* OESS-98 convert plugin option to FetchContent, add tests

* Fixes for pkcfg files because of plugin option

* OESS-98 fix tools test for plugins

* Keep doxygen comments under 100 chars long - format hint

* Whitespace

* HDFFV-11144 - Reclassify CMake messages

* HDFFV-11099/11100 added help text

* Reworked switch statement to compare string instead

* Fix typo

* Update CDash mode

* Correct name of threadsafe

* Correct option name

* Undo accidental commit

* Note LLVM 10 to 11 format default changes

* Update format plugin

* Undo clang-format version 11 changes

* One more correction

* Update supported platforms

* Revert whitespace changes

* Correct whitespace

* Changes from PR#3

* HDFFV-11213 added option to control gcc10 warnings diagnostics

* HDFFV-11212 Use the new references correctly in JNI utility and tests

* format source

* Fix typo

* Add new test file

* HDFFV-11212 - update test and remove unused arg

* Minor non-space formatting changes

* Use H5I_INVALID_ID instead of "-1"

* source formatting

* add missing testfile, update jni function

* Undo commit of debug code

* remove mislocated file

* Fix h5repack test for handling of fapls and id close

* Update h5diff test files usage text

* HDFFV-11212 add new ref tests for JNI export dataset

* src format update

* Remove blank line typo

* src format typo

* long double requires %Lg

* Another long double foramt specifer S.B. %Lg

* issue with t128bit test

* Windows issue with h5dump and type.

* Fix review issues

* refactor function nesting and fix error checks

* format fixes

* Remove untested functions and javadoc quiet comments

* Restore TRY block.

* Change string append errors to memory exception

* revert to H5_JNI_FATAL_ERROR - support functions need work

* Add assertion error for h5util functions

* remove duplicate function

* format fix

* Revert HD function error handling

* Update copyright comments

* GH #386 java folder copyright corrections

* Whitespace
2021-02-26 09:27:15 -06:00

383 lines
13 KiB
Java

/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://www.hdfgroup.org/licenses. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
package test;
import static org.junit.Assert.assertTrue;
import static org.junit.Assert.fail;
import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
import hdf.hdf5lib.exceptions.HDF5LibraryException;
import org.junit.After;
import org.junit.Before;
import org.junit.Rule;
import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5Sbasic {
@Rule public TestName testname = new TestName();
@Before
public void checkOpenIDs() {
assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0);
System.out.print(testname.getMethodName());
}
@After
public void nextTestName() {
System.out.println();
}
@Test//(expected = HDF5LibraryException.class)
public void testH5Sclose_invalid() throws Throwable {
long sid = H5.H5Sclose(-1);
assertTrue(sid == 0);
}
@Test(expected = HDF5LibraryException.class)
public void testH5Screate_invalid() throws Throwable {
H5.H5Screate(-1);
}
@Test(expected = IllegalArgumentException.class)
public void testH5Sget_simple_extent_type_invalid() throws Throwable {
H5.H5Sget_simple_extent_type(-1);
}
@Test
public void testH5Screate_scalar() {
long sid = HDF5Constants.H5I_INVALID_HID;
int class_type = -1;
try {
sid = H5.H5Screate(HDF5Constants.H5S_SCALAR);
assertTrue("H5.H5Screate_scalar",sid > 0);
class_type = H5.H5Sget_simple_extent_type(sid);
assertTrue("H5.H5Screate_scalar: type",class_type == HDF5Constants.H5S_SCALAR);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Screate: " + err);
}
finally {
try {H5.H5Sclose(sid);} catch (Exception ex) {}
}
}
@Test
public void testH5Screate_null() {
long sid = HDF5Constants.H5I_INVALID_HID;
int class_type = -1;
try {
sid = H5.H5Screate(HDF5Constants.H5S_NULL);
assertTrue("H5.H5Screate_null", sid > 0);
class_type = H5.H5Sget_simple_extent_type(sid);
assertTrue("H5.H5Screate_null: type", class_type == HDF5Constants.H5S_NULL);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Screate: " + err);
}
finally {
try {H5.H5Sclose(sid);} catch (Exception ex) {}
}
}
@Test(expected = NullPointerException.class)
public void testH5Screate_simple_dims_null() throws Throwable {
H5.H5Screate_simple(2, (long[])null, null);
}
@Test(expected = IllegalArgumentException.class)
public void testH5Screate_simple_rank_invalid() throws Throwable {
long dims[] = {5, 5};
H5.H5Screate_simple(-1, dims, null);
}
@Test(expected = IllegalArgumentException.class)
public void testH5Screate_simple_dims_invalid() throws Throwable {
long dims[] = {2, 2};
H5.H5Screate_simple(5, dims, null);
}
@Test(expected = HDF5LibraryException.class)
public void testH5Screate_simple_dims_exceed() throws Throwable {
long dims[] = {0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,
21,22,23,24,25,26,27,28,29,30,31,32,33,35};
H5.H5Screate_simple(35, dims, null);
}
//H5Screate_simple was changed to allow a dim of 0
// @Ignore(expected = HDF5LibraryException.class)
// public void testH5Screate_simple_dims_zero() {
// long dims[] = {0, 0};
// H5.H5Screate_simple(2, dims, null);
// }
@Test
public void testH5Screate_simple() {
long sid = HDF5Constants.H5I_INVALID_HID;
int class_type = -1;
int rank = 2;
long dims[] = {5, 5};
long maxdims[] = {10, 10};
try {
sid = H5.H5Screate_simple(rank, dims, maxdims);
assertTrue("H5.H5Screate_simple", sid > 0);
class_type = H5.H5Sget_simple_extent_type(sid);
assertTrue("H5.H5Screate_simple: type", class_type == HDF5Constants.H5S_SIMPLE);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Screate_simple: " + err);
}
finally {
try {H5.H5Sclose(sid);} catch (Exception ex) {}
}
}
@Test
public void testH5Screate_simple_unlimted() {
long sid = HDF5Constants.H5I_INVALID_HID;
int class_type = -1;
int rank = 2;
long dims[] = {5, 5};
long maxdims[] = {HDF5Constants.H5S_UNLIMITED, HDF5Constants.H5S_UNLIMITED};
try {
sid = H5.H5Screate_simple(rank, dims, maxdims);
assertTrue("H5.H5Screate_simple", sid > 0);
class_type = H5.H5Sget_simple_extent_type(sid);
assertTrue("H5.H5Screate_simple: type", class_type == HDF5Constants.H5S_SIMPLE);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Screate_simple: " + err);
}
finally {
try {H5.H5Sclose(sid);} catch (Exception ex) {}
}
}
@Test
public void testH5Screate_simple_unlimted_1d() {
long sid = HDF5Constants.H5I_INVALID_HID;
int class_type = -1;
int rank = 1;
long dims[] = {5};
long maxdims[] = {HDF5Constants.H5S_UNLIMITED};
try {
sid = H5.H5Screate_simple(rank, dims, maxdims);
assertTrue("H5.H5Screate_simple", sid > 0);
class_type = H5.H5Sget_simple_extent_type(sid);
assertTrue("H5.H5Screate_simple: type", class_type == HDF5Constants.H5S_SIMPLE);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Screate_simple: " + err);
}
finally {
try {H5.H5Sclose(sid);} catch (Exception ex) {}
}
}
@Test
public void testH5Screate_simple_max_default() {
long sid = HDF5Constants.H5I_INVALID_HID;
int rank = 2;
long dims[] = {5, 5};
try {
sid = H5.H5Screate_simple(rank, dims, null);
assertTrue("H5.H5Screate_simple_max_default", sid > 0);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Screate_simple: " + err);
}
finally {
try {H5.H5Sclose(sid);} catch (Exception ex) {}
}
}
@Test
public void testH5Screate_simple_extent() {
long sid = HDF5Constants.H5I_INVALID_HID;
int rank = 2;
long dims[] = {5, 5};
long maxdims[] = {10, 10};
try {
sid = H5.H5Screate(HDF5Constants.H5S_SIMPLE);
assertTrue("H5.H5Screate_simple_extent",sid > 0);
H5.H5Sset_extent_simple(sid, rank, dims, maxdims);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Screate: " + err);
}
finally {
try {H5.H5Sclose(sid);} catch (Exception ex) {}
}
}
@Test(expected = IllegalArgumentException.class)
public void testH5Sencode_invalid() throws Throwable {
H5.H5Sencode(-1);
}
@Test(expected = NullPointerException.class)
public void testH5Sdecode_null() throws Throwable {
H5.H5Sdecode(null);
}
@Test(expected = IllegalArgumentException.class)
public void testH5Sget_regular_hyperslab_invalid() throws Throwable {
long q_start[] = new long[2];
long q_stride[] = new long[2];
long q_count[] = new long[2];
long q_block[] = new long[2];
H5.H5Sget_regular_hyperslab(-1, q_start, q_stride, q_count, q_block);
}
@Test(expected = hdf.hdf5lib.exceptions.HDF5FunctionArgumentException.class)
public void testH5Sselect_copy_invalid() throws Throwable {
H5.H5Sselect_copy(-1, -1);
}
@Test(expected = hdf.hdf5lib.exceptions.HDF5DataspaceInterfaceException.class)
public void testH5Sselect_shape_same_invalid() throws Throwable {
H5.H5Sselect_shape_same(-1, -1);
}
@Test(expected = IllegalArgumentException.class)
public void testH5Sselect_adjust_invalid() throws Throwable {
long offset[][] = {{0,1},{2,4},{5,6}};
H5.H5Sselect_adjust(-1, offset);
}
@Test(expected = IllegalArgumentException.class)
public void testH5Sselect_adjust_rank_offset() throws Throwable {
long sid = HDF5Constants.H5I_INVALID_HID;
long offset[][] = {{0,1},{2,4},{5,6}};
try {
sid = H5.H5Screate(HDF5Constants.H5S_SIMPLE);
assertTrue("H5.H5Screate_simple_extent",sid > 0);
H5.H5Sselect_adjust(sid, offset);
}
finally {
try {H5.H5Sclose(sid);} catch (Exception ex) {}
}
}
@Test(expected = IllegalArgumentException.class)
public void testH5Sselect_intersect_block_invalid() throws Throwable {
long start[] = new long[2];
long end[] = new long[2];
H5.H5Sselect_intersect_block(-1, start, end);
}
@Test(expected = IllegalArgumentException.class)
public void testH5Sselect_intersect_block_rank_start() throws Throwable {
long sid = HDF5Constants.H5I_INVALID_HID;
long start[] = new long[2];
long end[] = null;
try {
sid = H5.H5Screate(HDF5Constants.H5S_SIMPLE);
assertTrue("H5.H5Screate_simple_extent",sid > 0);
H5.H5Sselect_intersect_block(sid, start, end);
}
finally {
try {H5.H5Sclose(sid);} catch (Exception ex) {}
}
}
@Test(expected = IllegalArgumentException.class)
public void testH5Sselect_intersect_block_rank_end() throws Throwable {
long sid = HDF5Constants.H5I_INVALID_HID;
long start[] = null;
long end[] = new long[2];
try {
sid = H5.H5Screate(HDF5Constants.H5S_SIMPLE);
assertTrue("H5.H5Screate_simple_extent",sid > 0);
H5.H5Sselect_intersect_block(sid, start, end);
}
finally {
try {H5.H5Sclose(sid);} catch (Exception ex) {}
}
}
@Test(expected = hdf.hdf5lib.exceptions.HDF5DataspaceInterfaceException.class)
public void testH5Sselect_project_intersection_invalid() throws Throwable {
H5.H5Sselect_project_intersection(-1, -1, -1);
}
@Test(expected = hdf.hdf5lib.exceptions.HDF5FunctionArgumentException.class)
public void testH5Scombine_hyperslab_invalid() throws Throwable {
long start[] = new long[2];
long count[] = new long[2];
H5.H5Scombine_hyperslab(-1, 0, start, null, count, null);
}
@Test(expected = NullPointerException.class)
public void testH5Scombine_hyperslab_null_start() throws Throwable {
long sid = HDF5Constants.H5I_INVALID_HID;
long start[] = null;
long stride[] = null;
long count[] = new long[2];
long block[] = null;
try {
sid = H5.H5Screate(HDF5Constants.H5S_SIMPLE);
assertTrue("H5.H5Screate_simple_extent",sid > 0);
H5.H5Scombine_hyperslab(sid, 0, start, stride, count, block);
}
finally {
try {H5.H5Sclose(sid);} catch (Exception ex) {}
}
}
@Test(expected = NullPointerException.class)
public void testH5Scombine_hyperslab_null_count() throws Throwable {
long sid = HDF5Constants.H5I_INVALID_HID;
long start[] = new long[2];
long stride[] = null;
long count[] = null;
long block[] = null;
try {
sid = H5.H5Screate(HDF5Constants.H5S_SIMPLE);
assertTrue("H5.H5Screate_simple_extent",sid > 0);
H5.H5Scombine_hyperslab(sid, 0, start, stride, count, block);
}
finally {
try {H5.H5Sclose(sid);} catch (Exception ex) {}
}
}
@Test(expected = hdf.hdf5lib.exceptions.HDF5FunctionArgumentException.class)
public void testH5Smodify_select_invalid() throws Throwable {
H5.H5Smodify_select(-1, 0, -1);
}
@Test(expected = hdf.hdf5lib.exceptions.HDF5FunctionArgumentException.class)
public void testH5Scombine_select_invalid() throws Throwable {
H5.H5Scombine_select(-1, 0, -1);
}
}