Files
hdf5/tools/lib/h5trav.h
Larry Knox a09e1ea219 Hdf5 merge issue #458 to hdf5_1_12 (#463)
* Snapshot version 1.12 release 1-3.  Update  version to 1.12.1-4.

* First cut of the H5 public API documentation. (#80)

* First cut of the H5 public API documentation.

* Added H5Z "bonus track."

* Applied Quincey's patch.

* Added the missing patches from Quincey's original patch.

* H5PL (complete) and basic H5VL API documentation.

* Added H5I API docs.

* Added H5L API docs.

* First installment from Elena's H5T batch.

* Second installment of Elena's H5T batch.

* Final installment of Elena's H5T batch.

* Full set of current H5F documentation. (#105)

* First cut of the H5 public API documentation.

* Added H5Z "bonus track."

* Applied Quincey's patch.

* Added the missing patches from Quincey's original patch.

* H5PL (complete) and basic H5VL API documentation.

* Added H5I API docs.

* Added H5L API docs.

* First installment from Elena's H5T batch.

* Second installment of Elena's H5T batch.

* Final installment of Elena's H5T batch.

* Migrated documentation for SWMR functions.

* Catching up on MDC functions.

* Integrated the H5F MDC function documentation.

* Added MDC and parallel H5F functions.

* Slightly updated main page.

* Added doxygen/dox/H5AC_cache_config_t.dox to MANIFEST.

* Doxygen - added (mostly) beginner functions (#112)

* Doxygen - added (mostly) beginner functions

* Removed duplicate H5Pset_szip function

* Add src/H5module.h to MANIFEST.

* close #195. (#196)

* Update HDF5PluginMacros.cmake

* Update HDF5PluginMacros.cmake

* Avoid aligned access for references by decoding into temporary buffer and then copying the result into the actual buffer.   Update test to be more thorough with using compound datatype fields everywhere. (#206)

* Modify temporary rpath for testing in java example scripts. (#230)

* Fix undefined left shifting of negative numbers (#338)

Undefined Bahavior Sanitizer errored here about left shifting negative numbers.

* Fixes various warnings noticed on Windows (#425)

* Fixes various warnings noticed on Windows

- Adds a prototype for our implementation of vasprintf
- Return type of H5_get_utf16_str() is now non-const
- Fixes possible uninitialized return type in Wremove_utf8
- Better isolation of fork() code in accum.c:test_swmr_write_big()
- Better isolation of non-zlib code in dsets.c:test_filter_delete()
- Removed unused variable in trefer.c:test_reference_cmpnd_obj()

* Fixes clang-format issues

* Applied clang-tidy readability-non-const-parameter warning fixes auto… (#429)

* Automatically applied clang-tidy readability-avoid-const-params-in-decls fixes

Removes useless const declarations.

* Fixed most readability-non-const-parameter warnings

These changes were made automatically by clang-tidy, but I manually reverted the changes related to the H5Z_func_t signature.

* Reformat source with clang v10.0.1.

Co-authored-by: Larry Knox <lrknox@hdfgroup.org>

* Added C++11 override keyword where appropriate (#433)

Added H5_OVERRIDE macro for compatibility with both C++11 and older.

* Various clang tidy warning fixes (#448)

* Fixed clang-tidy bugprone-reserved-identifier warnings

* Fixed clang-tidy bugprone-assert-side-effect warnings

* Fixed clang-tidy bugprone-copy-constructor-init warning

* Fixed clang-tidy readability-redundant-preprocessor warning

For error_test.c the removed code was already dead, because it was in the else of an `#if H5_USE_16_API` block.

Based on H5Location.h, I think p_get_ref_obj_type was meant to be in `#ifndef DOXYGEN_SHOULD_SKIP_THIS` and an `#endif` was missing.  Similarly, in the header, getObjTypeByIdx is only in H5_NO_DEPRECATED_SYMBOLS, not DOXYGEN_SHOULD_SKIP_THIS.

* Fixed clang-tidy readability-redundant-string-init warnings

* Fixed some clang-tidy performance-type-promotion-in-math-fn warnings

* Fixed clang-tidy performance-unnecessary-value-param warnings

* Reformat source with clang v10.0.1.

Co-authored-by: Larry Knox <lrknox@hdfgroup.org>

* Removed checks/workarounds for pre-C++89 compatibility (#449)

After 30+ years, just assume that the following exist:
- extension-less includes
- namespaces
- std::
- static_cast
- bool

* Fixed all clang-tidy bugprone-suspicious-string-compare warnings (#451)

* Fixed all clang-tidy bugprone-suspicious-string-compare warnings

This change was generated entirely by clang-tidy itself.

* Reformat code with clang v10.0.1.

Co-authored-by: Larry Knox <lrknox@hdfgroup.org>

* Remove 2 functions incorrectly merged from develop in a cherry-pick merge of PR #451.

Co-authored-by: Gerd Heber <gheber@hdfgroup.org>
Co-authored-by: bljhdf <58825073+bljhdf@users.noreply.github.com>
Co-authored-by: H. Joe Lee <hyoklee@hdfgroup.org>
Co-authored-by: Quincey Koziol <quincey@koziol.cc>
Co-authored-by: Sean McBride <sean@rogue-research.com>
Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
2021-03-12 12:00:15 -06:00

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7.9 KiB
C

/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://www.hdfgroup.org/licenses. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#ifndef H5TRAV_H
#define H5TRAV_H
#include "hdf5.h"
/* Typedefs for visiting objects */
typedef herr_t (*h5trav_obj_func_t)(const char *path_name, const H5O_info2_t *oinfo, const char *first_seen,
void *udata);
typedef herr_t (*h5trav_lnk_func_t)(const char *path_name, const H5L_info2_t *linfo, void *udata);
/*-------------------------------------------------------------------------
* public enum to specify type of an object
* the TYPE can be:
* H5TRAV_TYPE_UNKNOWN = -1,
* H5TRAV_TYPE_GROUP, Object is a group
* H5TRAV_TYPE_DATASET, Object is a dataset
* H5TRAV_TYPE_TYPE, Object is a named datatype
* H5TRAV_TYPE_LINK, Object is a symbolic link
* H5TRAV_TYPE_UDLINK, Object is a user-defined link
*-------------------------------------------------------------------------
*/
typedef enum {
H5TRAV_TYPE_UNKNOWN = -1, /* Unknown object type */
H5TRAV_TYPE_GROUP, /* Object is a group */
H5TRAV_TYPE_DATASET, /* Object is a dataset */
H5TRAV_TYPE_NAMED_DATATYPE, /* Object is a named datatype */
H5TRAV_TYPE_LINK, /* Object is a symbolic link */
H5TRAV_TYPE_UDLINK /* Object is a user-defined link */
} h5trav_type_t;
/*-------------------------------------------------------------------------
* public struct to store name and type of an object
*-------------------------------------------------------------------------
*/
/* Struct to keep track of symbolic link targets visited.
* Functions: symlink_visit_add() and symlink_is_visited()
*/
typedef struct symlink_trav_path_t {
H5L_type_t type;
char * file;
char * path;
} symlink_trav_path_t;
typedef struct symlink_trav_t {
size_t nalloc;
size_t nused;
symlink_trav_path_t *objs;
hbool_t dangle_link;
} symlink_trav_t;
typedef struct trav_path_t {
char * path;
h5trav_type_t type;
H5O_token_t obj_token; /* object token */
unsigned long fileno; /* File number that object is located in */
} trav_path_t;
typedef struct trav_info_t {
size_t nalloc;
size_t nused;
const char * fname;
hid_t fid; /* File ID */
trav_path_t * paths;
symlink_trav_t symlink_visited; /* already visited symbolic links */
void * opts; /* optional data passing */
} trav_info_t;
/*-------------------------------------------------------------------------
* keep record of hard link information
*-------------------------------------------------------------------------
*/
typedef struct trav_link_t {
char *new_name;
} trav_link_t;
/*-------------------------------------------------------------------------
* struct to store basic info needed for the h5trav table traversal algorythm
*-------------------------------------------------------------------------
*/
typedef struct trav_obj_t {
H5O_token_t obj_token; /* object token */
unsigned flags[2]; /* h5diff.object is present or not in both files*/
hbool_t is_same_trgobj; /* same target object? no need to compare */
char * name; /* name */
h5trav_type_t type; /* type of object */
trav_link_t * links; /* array of possible link names */
size_t sizelinks; /* size of links array */
size_t nlinks; /* number of links */
} trav_obj_t;
/*-------------------------------------------------------------------------
* private struct that stores all objects
*-------------------------------------------------------------------------
*/
typedef struct trav_table_t {
hid_t fid;
size_t size;
size_t nobjs;
trav_obj_t *objs;
} trav_table_t;
/*-------------------------------------------------------------------------
* public functions
*-------------------------------------------------------------------------
*/
#ifdef __cplusplus
extern "C" {
#endif
/*-------------------------------------------------------------------------
* "h5trav general" public functions
*-------------------------------------------------------------------------
*/
H5TOOLS_DLL void h5trav_set_index(H5_index_t print_index_by, H5_iter_order_t print_index_order);
H5TOOLS_DLL int h5trav_visit(hid_t file_id, const char *grp_name, hbool_t visit_start, hbool_t recurse,
h5trav_obj_func_t visit_obj, h5trav_lnk_func_t visit_lnk, void *udata,
unsigned fields);
H5TOOLS_DLL herr_t symlink_visit_add(symlink_trav_t *visited, H5L_type_t type, const char *file,
const char *path);
H5TOOLS_DLL hbool_t symlink_is_visited(symlink_trav_t *visited, H5L_type_t type, const char *file,
const char *path);
/*-------------------------------------------------------------------------
* "h5trav info" public functions
*-------------------------------------------------------------------------
*/
H5TOOLS_DLL int h5trav_getinfo(hid_t file_id, trav_info_t *info);
H5TOOLS_DLL ssize_t h5trav_getindex(const trav_info_t *info, const char *obj);
H5TOOLS_DLL int trav_info_visit_obj(const char *path, const H5O_info2_t *oinfo, const char *already_visited,
void *udata);
H5TOOLS_DLL int trav_info_visit_lnk(const char *path, const H5L_info2_t *linfo, void *udata);
/*-------------------------------------------------------------------------
* "h5trav table" public functions
*-------------------------------------------------------------------------
*/
H5TOOLS_DLL int h5trav_gettable(hid_t fid, trav_table_t *travt);
H5TOOLS_DLL int h5trav_getindext(const char *obj, const trav_table_t *travt);
/*-------------------------------------------------------------------------
* "h5trav print" public functions
*-------------------------------------------------------------------------
*/
H5TOOLS_DLL int h5trav_print(hid_t fid);
H5TOOLS_DLL void h5trav_set_verbose(int print_verbose);
#ifdef __cplusplus
}
#endif
/*-------------------------------------------------------------------------
* info private functions
*-------------------------------------------------------------------------
*/
H5TOOLS_DLL void trav_info_init(const char *filename, hid_t fileid, trav_info_t **info);
H5TOOLS_DLL void trav_info_free(trav_info_t *info);
H5TOOLS_DLL void trav_info_add(trav_info_t *info, const char *path, h5trav_type_t obj_type);
H5TOOLS_DLL void trav_fileinfo_add(trav_info_t *info, hid_t loc_id);
/*-------------------------------------------------------------------------
* table private functions
*-------------------------------------------------------------------------
*/
H5TOOLS_DLL void trav_table_init(hid_t fid, trav_table_t **table);
H5TOOLS_DLL void trav_table_free(trav_table_t *table);
H5TOOLS_DLL void trav_table_addflags(const unsigned *flags, char *objname, h5trav_type_t type,
trav_table_t *table);
#endif /* H5TRAV_H */