* Snapshot version 1.12 release 1-3. Update version to 1.12.1-4. * First cut of the H5 public API documentation. (#80) * First cut of the H5 public API documentation. * Added H5Z "bonus track." * Applied Quincey's patch. * Added the missing patches from Quincey's original patch. * H5PL (complete) and basic H5VL API documentation. * Added H5I API docs. * Added H5L API docs. * First installment from Elena's H5T batch. * Second installment of Elena's H5T batch. * Final installment of Elena's H5T batch. * Full set of current H5F documentation. (#105) * First cut of the H5 public API documentation. * Added H5Z "bonus track." * Applied Quincey's patch. * Added the missing patches from Quincey's original patch. * H5PL (complete) and basic H5VL API documentation. * Added H5I API docs. * Added H5L API docs. * First installment from Elena's H5T batch. * Second installment of Elena's H5T batch. * Final installment of Elena's H5T batch. * Migrated documentation for SWMR functions. * Catching up on MDC functions. * Integrated the H5F MDC function documentation. * Added MDC and parallel H5F functions. * Slightly updated main page. * Added doxygen/dox/H5AC_cache_config_t.dox to MANIFEST. * Doxygen - added (mostly) beginner functions (#112) * Doxygen - added (mostly) beginner functions * Removed duplicate H5Pset_szip function * Add src/H5module.h to MANIFEST. * close #195. (#196) * Update HDF5PluginMacros.cmake * Update HDF5PluginMacros.cmake * Avoid aligned access for references by decoding into temporary buffer and then copying the result into the actual buffer. Update test to be more thorough with using compound datatype fields everywhere. (#206) * Modify temporary rpath for testing in java example scripts. (#230) * Fix undefined left shifting of negative numbers (#338) Undefined Bahavior Sanitizer errored here about left shifting negative numbers. * Fixes various warnings noticed on Windows (#425) * Fixes various warnings noticed on Windows - Adds a prototype for our implementation of vasprintf - Return type of H5_get_utf16_str() is now non-const - Fixes possible uninitialized return type in Wremove_utf8 - Better isolation of fork() code in accum.c:test_swmr_write_big() - Better isolation of non-zlib code in dsets.c:test_filter_delete() - Removed unused variable in trefer.c:test_reference_cmpnd_obj() * Fixes clang-format issues * Applied clang-tidy readability-non-const-parameter warning fixes auto… (#429) * Automatically applied clang-tidy readability-avoid-const-params-in-decls fixes Removes useless const declarations. * Fixed most readability-non-const-parameter warnings These changes were made automatically by clang-tidy, but I manually reverted the changes related to the H5Z_func_t signature. * Reformat source with clang v10.0.1. Co-authored-by: Larry Knox <lrknox@hdfgroup.org> * Added C++11 override keyword where appropriate (#433) Added H5_OVERRIDE macro for compatibility with both C++11 and older. * Various clang tidy warning fixes (#448) * Fixed clang-tidy bugprone-reserved-identifier warnings * Fixed clang-tidy bugprone-assert-side-effect warnings * Fixed clang-tidy bugprone-copy-constructor-init warning * Fixed clang-tidy readability-redundant-preprocessor warning For error_test.c the removed code was already dead, because it was in the else of an `#if H5_USE_16_API` block. Based on H5Location.h, I think p_get_ref_obj_type was meant to be in `#ifndef DOXYGEN_SHOULD_SKIP_THIS` and an `#endif` was missing. Similarly, in the header, getObjTypeByIdx is only in H5_NO_DEPRECATED_SYMBOLS, not DOXYGEN_SHOULD_SKIP_THIS. * Fixed clang-tidy readability-redundant-string-init warnings * Fixed some clang-tidy performance-type-promotion-in-math-fn warnings * Fixed clang-tidy performance-unnecessary-value-param warnings * Reformat source with clang v10.0.1. Co-authored-by: Larry Knox <lrknox@hdfgroup.org> * Removed checks/workarounds for pre-C++89 compatibility (#449) After 30+ years, just assume that the following exist: - extension-less includes - namespaces - std:: - static_cast - bool * Fixed all clang-tidy bugprone-suspicious-string-compare warnings (#451) * Fixed all clang-tidy bugprone-suspicious-string-compare warnings This change was generated entirely by clang-tidy itself. * Reformat code with clang v10.0.1. Co-authored-by: Larry Knox <lrknox@hdfgroup.org> * Remove 2 functions incorrectly merged from develop in a cherry-pick merge of PR #451. Co-authored-by: Gerd Heber <gheber@hdfgroup.org> Co-authored-by: bljhdf <58825073+bljhdf@users.noreply.github.com> Co-authored-by: H. Joe Lee <hyoklee@hdfgroup.org> Co-authored-by: Quincey Koziol <quincey@koziol.cc> Co-authored-by: Sean McBride <sean@rogue-research.com> Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
772 lines
26 KiB
C++
772 lines
26 KiB
C++
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
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* Copyright by The HDF Group. *
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* All rights reserved. *
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* *
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* This file is part of HDF5. The full HDF5 copyright notice, including *
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* terms governing use, modification, and redistribution, is contained in *
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* the COPYING file, which can be found at the root of the source code *
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* distribution tree, or in https://www.hdfgroup.org/licenses. *
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* If you do not have access to either file, you may request a copy from *
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* help@hdfgroup.org. *
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* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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/*****************************************************************************
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FILE
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tlinks.cpp - HDF5 C++ testing functionalities associated with the
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C link interface (H5L)
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***************************************************************************/
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#include <iostream>
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using std::cerr;
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using std::endl;
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#include <string>
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#include "H5Cpp.h" // C++ API header file
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using namespace H5;
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#include "h5test.h"
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#include "h5cpputil.h" // C++ utilility header file
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#define NAME_BUF_SIZE 1024
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#define H5L_DIM1 100
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#define H5L_DIM2 100
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// Object visit structs
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typedef struct {
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const char *path; /* Path to object */
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H5O_type_t type; /* Type of object */
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} obj_visit_t;
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// User data for callback function
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typedef struct {
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unsigned idx; /* Index in object visit structure */
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const obj_visit_t *info; /* Pointer to the object visit structure to use */
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} ovisit_ud_t;
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static const char *FILENAME[] = {"link0", "link1.h5", "link2.h5", "visit", NULL};
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/*-------------------------------------------------------------------------
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* Function: test_basic_links
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*
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* Purpose Test building a file with assorted links.
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*
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* Return Success: 0
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* Failure: -1
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*
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* October 16, 2009
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*-------------------------------------------------------------------------
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*/
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static void
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test_basic_links(hid_t fapl_id, hbool_t new_format)
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{
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hsize_t size[1] = {1};
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char filename[NAME_BUF_SIZE];
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// Use the file access template id to create a file access prop. list.
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FileAccPropList fapl(fapl_id);
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try {
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if (new_format)
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SUBTEST("Link creation (w/new group format)")
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else
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SUBTEST("Link creation")
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h5_fixname(FILENAME[0], fapl_id, filename, sizeof filename);
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H5File file(filename, H5F_ACC_TRUNC, FileCreatPropList::DEFAULT, fapl);
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// Create simple dataspace
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DataSpace scalar(1, size, size);
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// Create a group then close it by letting the object go out of scope
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{
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Group group(file.createGroup("grp1", 0));
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}
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// Create a dataset then close it by letting the object go out of scope
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{
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DataSet dset1(file.createDataSet("dset1", PredType::NATIVE_INT, scalar));
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}
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hid_t file_id = file.getId();
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// Because these are not implemented in the C++ API yet, they are
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// used so CommonFG::getLinkval can be tested.
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// Create a hard link
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if (H5Lcreate_hard(file_id, "dset1", H5L_SAME_LOC, "grp1/hard1", H5P_DEFAULT, H5P_DEFAULT) < 0)
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throw Exception("test_basic_links", "H5Lcreate_hard failed");
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// Create a symbolic link
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if (H5Lcreate_soft("/dset1", file_id, "grp1/soft", H5P_DEFAULT, H5P_DEFAULT) < 0)
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throw Exception("test_basic_links", "H5Lcreate_soft failed");
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// Create a symbolic link to something that doesn't exist
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if (H5Lcreate_soft("foobar", file_id, "grp1/dangle", H5P_DEFAULT, H5P_DEFAULT) < 0)
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throw Exception("test_basic_links", "H5Lcreate_soft failed");
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// Create a recursive symbolic link
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if (H5Lcreate_soft("/grp1/recursive", file_id, "/grp1/recursive", H5P_DEFAULT, H5P_DEFAULT) < 0)
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throw Exception("test_basic_links", "H5Lcreate_soft failed");
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// Verify link values before closing the file
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H5std_string softlink_val = file.getLinkval("grp1/soft");
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verify_val(softlink_val, "/dset1", "H5File::getLinkval grp1/soft", __LINE__, __FILE__);
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H5std_string dngllink_val = file.getLinkval("grp1/dangle");
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verify_val(dngllink_val, "foobar", "H5File::getLinkval grp1/dangle", __LINE__, __FILE__);
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H5std_string reclink_val = file.getLinkval("grp1/recursive");
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verify_val(reclink_val, "/grp1/recursive", "H5File::getLinkval grp1/recursive", __LINE__, __FILE__);
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} // end of try block
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catch (Exception &E) {
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issue_fail_msg("test_basic_links()", __LINE__, __FILE__, E.getCDetailMsg());
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}
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// Open the file and check on the links in it
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try {
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// Open the file above
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H5File file(filename, H5F_ACC_RDWR, FileCreatPropList::DEFAULT, fapl);
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// Verify link existence
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if (file.nameExists("dset1", LinkAccPropList::DEFAULT) != TRUE)
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throw InvalidActionException("H5File::nameExists", "dset1 doesn't exist");
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if (file.nameExists("grp1/soft", LinkAccPropList::DEFAULT) != TRUE)
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throw InvalidActionException("H5File::nameExists", "grp1/soft doesn't exist");
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// Deprecated
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if (file.exists("dset1", LinkAccPropList::DEFAULT) != TRUE)
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throw InvalidActionException("H5File::exists", "dset1 doesn't exist");
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if (file.exists("grp1/soft", LinkAccPropList::DEFAULT) != TRUE)
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throw InvalidActionException("H5File::exists", "grp1/soft doesn't exist");
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// Verify link values
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H5std_string softlink_val = file.getLinkval("grp1/soft");
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verify_val(softlink_val, "/dset1", "H5File::getLinkval grp1/soft", __LINE__, __FILE__);
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H5std_string reclink_val = file.getLinkval("grp1/recursive");
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verify_val(reclink_val, "/grp1/recursive", "H5File::getLinkval grp1/recursive", __LINE__, __FILE__);
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PASSED();
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} // end of try block
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catch (Exception &E) {
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issue_fail_msg("test_basic_links()", __LINE__, __FILE__, E.getCDetailMsg());
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}
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} // test_basic_links
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/*-------------------------------------------------------------------------
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* Function: test_lcpl
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*
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* Purpose: Tests link creation property lists, specifically, the
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* character encoding property.
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*
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* Return: Success: 0
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* Failure: number of errors
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* March, 2018
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*-------------------------------------------------------------------------
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*/
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const H5std_string GROUP1NAME("First_group");
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const H5std_string GROUP2NAME("Second_group");
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static void
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test_lcpl(hid_t fapl_id, hbool_t new_format)
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{
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H5L_info2_t linfo;
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char filename[1024];
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hsize_t dims[2];
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if (new_format)
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SUBTEST("Link creation property lists (w/new group format)")
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else
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SUBTEST("Link creation property lists")
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try {
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FileAccPropList fapl(fapl_id);
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// Create a new file.
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h5_fixname(FILENAME[0], fapl_id, filename, sizeof filename);
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H5File file(filename, H5F_ACC_TRUNC, FileCreatPropList::DEFAULT, fapl);
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// Create and link a group with the default LCPL.
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Group grp_1(file.createGroup(GROUP1NAME));
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grp_1.close();
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// Check that its character encoding is the default.
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linfo = file.getLinkInfo(GROUP1NAME);
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if (linfo.cset != H5T_CSET_ASCII)
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throw InvalidActionException("H5Lget_info", "Character encoding is not default");
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// Create and commit a datatype with the default LCPL.
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IntType dtype(PredType::NATIVE_INT);
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dtype.commit(file, "/type");
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dtype.close();
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// Check that its character encoding is the default.
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linfo = file.getLinkInfo("/type");
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verify_val(linfo.cset, H5T_CSET_ASCII, "Character encoding is not default", __LINE__, __FILE__);
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// Create a simple dataspace.
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dims[0] = H5L_DIM1;
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dims[1] = H5L_DIM2;
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DataSpace dspace(2, dims);
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// Create a dataset using the default LCPL.
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DataSet dset(file.createDataSet("/dataset", PredType::NATIVE_INT, dspace));
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dset.close();
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// Check that its character encoding is the default.
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linfo = file.getLinkInfo("/dataset");
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verify_val(linfo.cset, H5T_CSET_ASCII, "Character encoding is not default", __LINE__, __FILE__);
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// Create a link creation property list with the UTF-8 character encoding.
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LinkCreatPropList lcpl;
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lcpl.setCharEncoding(H5T_CSET_UTF8);
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// Create and link a group with the new LCPL.
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Group grp_2(file.createGroup(GROUP2NAME, lcpl));
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grp_2.close();
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// Check that its character encoding is UTF-8.
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linfo = file.getLinkInfo(GROUP2NAME);
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verify_val(linfo.cset, H5T_CSET_UTF8, "Character encoding is not UTF-8", __LINE__, __FILE__);
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PASSED();
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} // end of try block
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catch (Exception &E) {
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issue_fail_msg("test_lcpl()", __LINE__, __FILE__, E.getCDetailMsg());
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}
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} // end test_lcpl()
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/*-------------------------------------------------------------------------
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* Function: test_move
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*
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* Purpose: Tests wrappers of H5Lmove()
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*
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* Return: Success: 0
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* Failure: number of errors
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* March, 2018
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*-------------------------------------------------------------------------
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*/
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static void
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test_move(hid_t fapl_id, hbool_t new_format)
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{
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char filename[1024];
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if (new_format)
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SUBTEST("Group::moveLink (w/new group format)")
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else
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SUBTEST("Group::moveLink")
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try {
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FileAccPropList fapl(fapl_id);
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// Create two new files
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h5_fixname(FILENAME[0], fapl_id, filename, sizeof filename);
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H5File file_a(filename, H5F_ACC_TRUNC, FileCreatPropList::DEFAULT, fapl);
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h5_fixname(FILENAME[1], fapl_id, filename, sizeof filename);
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H5File file_b(filename, H5F_ACC_TRUNC, FileCreatPropList::DEFAULT, fapl);
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// Create groups in first file
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Group grp_1(file_a.createGroup(GROUP1NAME));
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Group grp_2(file_a.createGroup(GROUP2NAME));
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Group grp_move(grp_1.createGroup("group_move"));
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// Create hard and soft links
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grp_1.link(H5L_TYPE_HARD, "group_move", "hard");
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grp_2.link(H5L_TYPE_SOFT, "/First_group/group_copy", "soft");
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// Move a group across files, should fail
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try {
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grp_1.moveLink("group_move", file_b, "group_new_name");
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// Should throw an exception but didn't
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H5_FAILED();
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cerr << " Group group_move should not be moved across files" << endl;
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}
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catch (Exception &E) {
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// expected
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}
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// Move a soft link across files, should succeed
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grp_2.moveLink("soft", file_b, "soft_new_name");
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if (file_b.exists("soft_new_name") != TRUE)
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throw InvalidActionException("H5File::exists", "grp1/soft doesn't exist");
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// Move a group across groups in the same file while renaming it
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grp_1.moveLink("group_move", grp_2, "group_new_name");
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// Open the group just moved to the new location. */
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Group moved_grp = grp_2.openGroup("group_new_name");
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moved_grp.close();
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// Verify that the group is no longer in the original location
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try {
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moved_grp = grp_1.openGroup("group_move");
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// Should throw an exception but didn't
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H5_FAILED();
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cerr << " Group group_move should not be in original location" << endl;
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}
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catch (Exception &E) {
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// expected
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}
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// Use H5Lmove to rename a group without moving it
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H5std_string new_name("group_new_name");
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H5std_string newer_name("group_newer_name");
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grp_2.moveLink(new_name, newer_name);
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// Open the group
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moved_grp = grp_2.openGroup("group_newer_name");
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moved_grp.close();
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// Use H5Lmove to move a group without renaming it
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grp_2.moveLink(newer_name, grp_1, newer_name);
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// Open the group
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moved_grp = grp_1.openGroup("group_newer_name");
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moved_grp.close();
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// Move the group while giving long paths
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file_a.moveLink("/First_group/group_newer_name", grp_2, "/Second_group/group_newest_name");
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// Open the group just moved to the new location
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moved_grp = grp_2.openGroup("group_newest_name");
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moved_grp.close();
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// Verify that the groups are not in previous locations
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try {
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moved_grp = grp_1.openGroup("group_newer_name");
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moved_grp.close();
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H5_FAILED(); // Should throw an exception but didn't
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cerr << " Group group_newer_name should not be in GROUP1NAME" << endl;
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}
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catch (Exception &E) {
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// expected
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}
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try {
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moved_grp = grp_2.openGroup("group_newer_name");
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moved_grp.close();
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H5_FAILED(); // Should throw an exception but didn't
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cerr << " Group group_newer_name should not be in GROUP2NAME" << endl;
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}
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catch (Exception &E) {
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// expected
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}
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try {
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moved_grp = grp_2.openGroup("group_new_name");
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moved_grp.close();
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H5_FAILED(); // Should throw an exception but didn't
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cerr << " Group group_new_name should not be in GROUP2NAME" << endl;
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}
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catch (Exception &E) {
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// expected
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}
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try {
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moved_grp = grp_1.openGroup("group_copy");
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moved_grp.close();
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H5_FAILED(); // Should throw an exception but didn't
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cerr << " Group group_copy should not be in GROUP1NAME" << endl;
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}
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catch (Exception &E) {
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// expected
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}
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PASSED();
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} // end of try block
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catch (Exception &E) {
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issue_fail_msg("test_move()", __LINE__, __FILE__, E.getCDetailMsg());
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}
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} // test_move
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/*-------------------------------------------------------------------------
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* Function: test_copy
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*
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* Purpose: Tests wrappers of H5Lcopy()
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*
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* Return: Success: 0
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* Failure: number of errors
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* March, 2018
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*-------------------------------------------------------------------------
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*/
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static void
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test_copy(hid_t fapl_id, hbool_t new_format)
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{
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char filename[1024];
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if (new_format)
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SUBTEST("Group::copyLink (w/new group format)")
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|
else
|
|
SUBTEST("Group::copyLink")
|
|
|
|
try {
|
|
// Create two new files
|
|
h5_fixname(FILENAME[0], fapl_id, filename, sizeof filename);
|
|
H5File file_a(filename, H5F_ACC_TRUNC, FileCreatPropList::DEFAULT, fapl_id);
|
|
h5_fixname(FILENAME[1], fapl_id, filename, sizeof filename);
|
|
H5File file_b(filename, H5F_ACC_TRUNC, FileCreatPropList::DEFAULT, fapl_id);
|
|
|
|
// Create groups in first file
|
|
Group grp_1(file_a.createGroup(GROUP1NAME));
|
|
Group grp_2(file_a.createGroup(GROUP2NAME));
|
|
Group grp_move(grp_1.createGroup("group_copy"));
|
|
|
|
// Create hard and soft links
|
|
grp_1.link("group_copy", H5L_SAME_LOC, "hard");
|
|
grp_2.link("/First_group/group_copy", "soft");
|
|
|
|
// Copy a group across files, should fail
|
|
try {
|
|
grp_1.copyLink("group_copy", file_b, "group_new_name");
|
|
}
|
|
catch (Exception &E) {
|
|
// expected
|
|
}
|
|
|
|
// Copy a soft link across files, should succeed
|
|
grp_2.copyLink("soft", file_b, "soft_new_name");
|
|
if (file_b.exists("soft_new_name") != TRUE)
|
|
throw InvalidActionException("H5File::exists", "soft_new_name doesn't exist");
|
|
|
|
// Move a group across groups in the same file while renaming it
|
|
H5std_string copy_name("group_copy");
|
|
H5std_string new_name("group_new_name");
|
|
grp_1.copyLink(copy_name, grp_2, new_name);
|
|
|
|
// Open the group just moved to the new location.
|
|
Group moved_grp(grp_2.openGroup("group_new_name"));
|
|
moved_grp.close();
|
|
|
|
// Verify that the group is also in the original location
|
|
moved_grp = grp_1.openGroup("group_copy");
|
|
moved_grp.close();
|
|
|
|
// Create a group in the same location with a different name
|
|
grp_2.copyLink("group_new_name", "group_newer_name");
|
|
|
|
// Open the group
|
|
moved_grp = grp_2.openGroup("group_newer_name");
|
|
moved_grp.close();
|
|
|
|
// Verify that the group is also in the original location
|
|
moved_grp = grp_2.openGroup("group_new_name");
|
|
moved_grp.close();
|
|
|
|
// Use H5Lcopy to copy to a different location with the same name
|
|
grp_2.copyLink("group_newer_name", grp_1, "group_newer_name");
|
|
|
|
// Open the group
|
|
moved_grp = grp_1.openGroup("group_newer_name");
|
|
moved_grp.close();
|
|
|
|
// Verify that the group is still in the previous location
|
|
moved_grp = grp_2.openGroup("group_new_name");
|
|
moved_grp.close();
|
|
|
|
// Copy the group while giving long paths
|
|
file_a.copyLink("/First_group/group_newer_name", grp_2, "/Second_group/group_newest_name");
|
|
|
|
// Open the newest group just moved to the new location
|
|
moved_grp = grp_2.openGroup("group_newest_name");
|
|
moved_grp.close();
|
|
|
|
// Verify that the group is still in all previous original locations
|
|
moved_grp = grp_1.openGroup("group_newer_name");
|
|
moved_grp.close();
|
|
|
|
moved_grp = grp_2.openGroup("group_newer_name");
|
|
moved_grp.close();
|
|
|
|
moved_grp = grp_2.openGroup("group_new_name");
|
|
moved_grp.close();
|
|
|
|
moved_grp = grp_1.openGroup("group_copy");
|
|
moved_grp.close();
|
|
|
|
// Delete "group_newer_name" from group 2, then try to open it.
|
|
grp_2.unlink("group_newer_name");
|
|
try {
|
|
moved_grp = grp_2.openGroup("group_newer_name");
|
|
moved_grp.close();
|
|
|
|
H5_FAILED(); // Should throw an exception but didn't
|
|
cerr << " Group group_newer_name should not be in GROUP2NAME" << endl;
|
|
}
|
|
catch (Exception &E) {
|
|
// expected
|
|
}
|
|
|
|
// Delete "group_copy" from group 1, then try to open it.
|
|
grp_1.unlink("group_copy");
|
|
try {
|
|
moved_grp = grp_1.openGroup("group_copy");
|
|
moved_grp.close();
|
|
|
|
H5_FAILED(); // Should throw an exception but didn't
|
|
cerr << " Group group_copy should not be in GROUP1NAME" << endl;
|
|
}
|
|
catch (Exception &E) {
|
|
// expected
|
|
}
|
|
|
|
PASSED();
|
|
} // end of try block
|
|
catch (Exception &E) {
|
|
issue_fail_msg("test_copy()", __LINE__, __FILE__, E.getCDetailMsg());
|
|
}
|
|
} // test_copy
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: test_num_links
|
|
*
|
|
* Purpose Test setting and getting limit of number of links
|
|
*
|
|
* Return Success: 0
|
|
* Failure: -1
|
|
*
|
|
* October 16, 2009
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
static void
|
|
test_num_links(hid_t fapl_id, hbool_t new_format)
|
|
{
|
|
char filename[NAME_BUF_SIZE];
|
|
|
|
if (new_format)
|
|
SUBTEST("Setting number of links (w/new group format)")
|
|
else
|
|
SUBTEST("Setting number of links")
|
|
|
|
try {
|
|
// Use the file access template id to create a file access prop. list.
|
|
FileAccPropList fapl(fapl_id);
|
|
|
|
h5_fixname(FILENAME[0], fapl_id, filename, sizeof filename);
|
|
H5File file(filename, H5F_ACC_RDWR, FileCreatPropList::DEFAULT, fapl);
|
|
|
|
LinkAccPropList lapl;
|
|
size_t nlinks = 5;
|
|
lapl.setNumLinks(nlinks);
|
|
|
|
// Read it back and verify
|
|
size_t read_nlinks = lapl.getNumLinks();
|
|
verify_val(read_nlinks, nlinks, "LinkAccPropList::setNumLinks", __LINE__, __FILE__);
|
|
|
|
PASSED();
|
|
} // end of try block
|
|
catch (Exception &E) {
|
|
issue_fail_msg("test_num_links()", __LINE__, __FILE__, E.getCDetailMsg());
|
|
}
|
|
} // test_num_links
|
|
|
|
// Data for visit on the file
|
|
static const obj_visit_t file_visit[] = {
|
|
{".", H5O_TYPE_GROUP},
|
|
{"Data", H5O_TYPE_GROUP},
|
|
{"Data/Compressed_Data", H5O_TYPE_DATASET},
|
|
{"Data/Float_Data", H5O_TYPE_DATASET},
|
|
};
|
|
|
|
// Data for visit on the group
|
|
static const obj_visit_t group_visit[] = {
|
|
{".", H5O_TYPE_GROUP},
|
|
{"Compressed_Data", H5O_TYPE_DATASET},
|
|
{"Float_Data", H5O_TYPE_DATASET},
|
|
};
|
|
|
|
const H5std_string FILE_NAME("tvisit.h5");
|
|
const H5std_string GROUP_NAME("/Data");
|
|
const H5std_string DSET1_NAME("/Data/Compressed_Data");
|
|
const H5std_string DSET2_NAME("/Data/Float_Data");
|
|
const int RANK = 2;
|
|
const int DIM1 = 2;
|
|
|
|
// Operator function
|
|
static int
|
|
visit_obj_cb(H5Object &obj, const H5std_string name, const H5O_info2_t *oinfo, void *_op_data)
|
|
{
|
|
ovisit_ud_t *op_data = static_cast<ovisit_ud_t *>(_op_data);
|
|
|
|
// Check for correct object information
|
|
if (strcmp(op_data->info[op_data->idx].path, name.c_str()) != 0)
|
|
return (H5_ITER_ERROR);
|
|
if (op_data->info[op_data->idx].type != oinfo->type)
|
|
return (H5_ITER_ERROR);
|
|
|
|
// Advance to next location
|
|
op_data->idx++;
|
|
|
|
return (H5_ITER_CONT);
|
|
}
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: test_visit
|
|
*
|
|
* Purpose Test H5Object::visit
|
|
*
|
|
* Return None
|
|
*
|
|
* February 8, 2019
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
static void
|
|
test_visit(hid_t fapl_id, hbool_t new_format)
|
|
{
|
|
hsize_t dims[2];
|
|
hsize_t cdims[2];
|
|
char filename[NAME_BUF_SIZE];
|
|
|
|
if (new_format)
|
|
SUBTEST("H5Object::visit (w/new group format)")
|
|
else
|
|
SUBTEST("H5Object::visit")
|
|
|
|
try {
|
|
// Use the file access template id to create a file access prop. list
|
|
FileAccPropList fapl(fapl_id);
|
|
|
|
// Build the hdf5 file name and create the file
|
|
h5_fixname(FILENAME[3], fapl_id, filename, sizeof filename);
|
|
H5File *file = new H5File(filename, H5F_ACC_TRUNC, FileCreatPropList::DEFAULT, fapl);
|
|
|
|
// Create a group
|
|
Group *group = new Group(file->createGroup(GROUP_NAME));
|
|
|
|
// Create a chunked/compressed dataset within this group specified by path
|
|
dims[0] = 20;
|
|
dims[1] = 2;
|
|
cdims[0] = 2;
|
|
cdims[1] = 2;
|
|
DataSpace * dataspace = new DataSpace(RANK, dims); // create new dspace
|
|
DSetCreatPropList ds_creatplist; // create dataset creation prop list
|
|
ds_creatplist.setChunk(2, cdims); // then modify it for compression
|
|
ds_creatplist.setDeflate(6);
|
|
|
|
DataSet *dataset =
|
|
new DataSet(file->createDataSet(DSET1_NAME, PredType::NATIVE_INT, *dataspace, ds_creatplist));
|
|
|
|
delete dataset;
|
|
delete dataspace;
|
|
|
|
// Create another dataset
|
|
dims[0] = 5;
|
|
dims[1] = 2;
|
|
dataspace = new DataSpace(RANK, dims); // create second dspace
|
|
dataset = new DataSet(file->createDataSet(DSET2_NAME, PredType::NATIVE_FLOAT, *dataspace));
|
|
|
|
// Close everything
|
|
delete dataset;
|
|
delete dataspace;
|
|
delete group;
|
|
delete file;
|
|
|
|
// Reopen the file and group in the file.
|
|
file = new H5File(filename, H5F_ACC_RDWR);
|
|
group = new Group(file->openGroup("Data"));
|
|
|
|
// Open the group
|
|
dataset = new DataSet(group->openDataSet(DSET2_NAME));
|
|
delete dataset;
|
|
|
|
// Visit objects in the file
|
|
ovisit_ud_t udata; /* User-data for visiting */
|
|
udata.idx = 0;
|
|
udata.info = file_visit;
|
|
|
|
file->visit(H5_INDEX_NAME, H5_ITER_INC, visit_obj_cb, &udata, H5O_INFO_BASIC);
|
|
|
|
// Visit objects in the group
|
|
udata.idx = 0;
|
|
udata.info = group_visit;
|
|
|
|
group->visit(H5_INDEX_NAME, H5_ITER_INC, visit_obj_cb, &udata, H5O_INFO_BASIC);
|
|
|
|
// Close the group and file.
|
|
delete group;
|
|
delete file;
|
|
|
|
PASSED();
|
|
} // end of try block
|
|
catch (Exception &E) {
|
|
cerr << "in catch" << endl;
|
|
issue_fail_msg("test_visit()", __LINE__, __FILE__, E.getCDetailMsg());
|
|
}
|
|
} // test_visit()
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: test_links
|
|
*
|
|
* Purpose Test links
|
|
*
|
|
* Return None
|
|
*
|
|
* October 16, 2009
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
extern "C" void
|
|
test_links()
|
|
{
|
|
hid_t fapl_id, fapl2_id; /* File access property lists */
|
|
unsigned new_format; /* Whether to use the new format or not */
|
|
|
|
if ((fapl_id = h5_fileaccess()) < 0)
|
|
throw Exception("test_links", "Unable to get file access property list");
|
|
|
|
// Output message about test being performed
|
|
MESSAGE(5, ("Testing Various Links\n"));
|
|
try {
|
|
/* Copy the file access property list */
|
|
if ((fapl2_id = H5Pcopy(fapl_id)) < 0)
|
|
throw Exception("test_links", "H5Pcopy failed");
|
|
|
|
/* Set the "use the latest version of the format" bounds for creating
|
|
objects in the file */
|
|
if (H5Pset_libver_bounds(fapl2_id, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0)
|
|
throw Exception("test_links", "H5Pset_libver_bounds failed");
|
|
|
|
/* Loop over using new group format */
|
|
for (new_format = FALSE; new_format <= TRUE; new_format++) {
|
|
hid_t my_fapl_id;
|
|
|
|
/* Check for FAPL to use */
|
|
if (new_format)
|
|
my_fapl_id = fapl2_id;
|
|
else
|
|
my_fapl_id = fapl_id;
|
|
|
|
/* General tests... (on both old & new format groups */
|
|
// FileAccPropList may be passed in instead of fapl id
|
|
test_basic_links(my_fapl_id, new_format);
|
|
test_num_links(my_fapl_id, new_format);
|
|
test_move(my_fapl_id, new_format);
|
|
test_copy(my_fapl_id, new_format);
|
|
test_lcpl(my_fapl_id, new_format);
|
|
test_visit(my_fapl_id, new_format);
|
|
} /* end for */
|
|
|
|
/* Close 2nd FAPL */
|
|
H5Pclose(fapl2_id);
|
|
|
|
h5_clean_files(FILENAME, fapl_id);
|
|
}
|
|
catch (Exception &E) {
|
|
issue_fail_msg("test_links()", __LINE__, __FILE__, E.getCDetailMsg());
|
|
}
|
|
}
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: cleanup_links
|
|
*
|
|
* Purpose Cleanup temporary test files
|
|
*
|
|
* Return none
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
extern "C" void
|
|
cleanup_links()
|
|
{
|
|
HDremove(FILENAME[0]);
|
|
HDremove(FILENAME[1]);
|
|
}
|