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feature/onion_vfd
hdf5/.clang-format
Dana Robinson 63197e99f8 Onion VFD: Sync with develop (#1685) 
* Removes unused definitions from module headers (#1624)

* Fix these Doxygen warnings #1581 (#1589)

* Fixes a typo in H5.c (#1639)

* free MPI_Group/MPI_Comm/MPI_Datatype objects (#1638)

* free MPI_Group/MPI_Comm/MPI_Datatype objects

* fix clang-format style

* Adds build and license shields to README.md (#1641)

* First stab at a Github status bar

* Adds a .tokeignore file for counting lines of code accurately

* Yanks lines of code calculation since it wildly overcounts

* not depend on doIO to free an MPI_Comm object (#1642)

* free MPI datatypes previously created (#1637)

* Retrieve MPI-IO hints used by MPI library after file open (#1636)

H5Pget_fapl_mpio() should return an MPI info object containing all the
MPI-IO hints used by the MPI library underneath, after the file is
opened. Some hints, such as cb_nodes (number of I/O aggregators), are
useful for HDF5 applications and I/O libraries built on top of HDF5.

* OESS-168: Remove clang warnings. (#1309)

* OESS-168: Remove clang warnings.

* OESS-168: Address @lrknox review.

* OESS-168: Remove clang warnings. (#1376)

* Remove H5_NO_ALIGNMENT_RESTRICTIONS (#1426)

* Do not conditionally compile code that uses a pointer dereference
and assignment to copy a potentially unaligned variable to aligned
automatic storage, or vice versa.  Instead, always use naked `memcpy(3)`s.
Disassembling the generated code reveals that the `memcpy(3)`s optimize
(`-O3`) to a single `mov` instruction for x86_64, which is not strict
about alignment.

This change reduces the size of code and scripts by 143 lines, eases
our way to cross-compilation, and avoids invoking undefined behavior.

* Committing clang-format changes

* Per discussion, use HD and add comments.

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Cleans up some HL library code that inappropriately returns htri_t values cast to herr_t (#1651)

* Cleans up some HL library code that inappropriately returns
htri_t values cast to herr_t

* Committing clang-format changes

* Formatted source

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Mirror vfd test fixes (#1629)

* Use the FAPL that was created earlier in the test (and delete an unused
variable).   This allows 'make check-vfd' to pass with --enable-mirror-vfd.

* Check for testing directory before creating, to avoid warning from bash.
Clean out .libs directory before re-using it (after a failed test), to
remove any files generated by libtool.

* Committing clang-format changes

* Increment error count on failed file open and skip tests for VFDs that need
modified filenames.

* Skip the mirror VFD for 'make check-vfd' - the mirror VFD requires networking
configuration parameters and can't be provided for an automated test that
is configured with an environment variable.

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Removes HDF Group paths, adds shellcheck fixes (#1656)

For more information:
  https://www.shellcheck.net/wiki/SC2086 -- Double quote to prevent globbing ...
  https://www.shellcheck.net/wiki/SC2230 -- which is non-standard. Use builti...
  https://www.shellcheck.net/wiki/SC2006 -- Use $(...) notation instead of le...

* HDFFV-11306 Fixed (#1657)

* HDFFV-11306,
 * Fixed it so both h5open_f and h5close_f can be called multiple times.
 * Fixed an issue with open objects remaining after h5close_f was called.
 * Added additional tests.

* comments clean-up

* Develop clang format java (#1653)

* added HDFFV-11306 entry (#1662)

* Adds the -q flag to all swmr test programs, quieting noisy output (#1665)

* Adds paths-ignore to the Github pull request workflow (#1663)

* Changes Github action `hdf5 dev CI` to `PR hdf5 dev CI` (#1666)

So the PR action name is not the same as the one in main.yml

* Replace H5detect's build-time detection of C99 integer properties with a (#1400)

* Replace H5detect's build-time detection of C99 integer properties with a
table-driven routine, `H5T__init_native_int()`, that is run at library
initialization time.

* Improve handling of copying of dynamic libraries and clean them up after (#1681)

test finishes.

Co-authored-by: Allen Byrne <50328838+byrnHDF@users.noreply.github.com>
Co-authored-by: Wei-keng Liao <wkliao@users.noreply.github.com>
Co-authored-by: H. Joe Lee <hyoklee@hdfgroup.org>
Co-authored-by: David Young <dyoung@hdfgroup.org>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Quincey Koziol <koziol@lbl.gov>
Co-authored-by: Scot Breitenfeld <brtnfld@hdfgroup.org>
2022-04-24 23:20:52 -07:00

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---
BasedOnStyle: LLVM
AlignConsecutiveAssignments: true
BraceWrapping:
AfterFunction: true
#llvm10-11: AfterControlStatement: false - Never
BeforeCatch: true
BeforeElse: true
#llvm11: BeforeLambdaBody: false
#llvm11: BeforeWhile: false
BreakBeforeBraces: Stroustrup
BreakAfterJavaFieldAnnotations: true
BreakStringLiterals: true
ColumnLimit: 110 # Update $max_trace_macro_line_len in bin/trace also
IndentWidth: 4
---
Language: Cpp
#llvm11: AlignConsecutiveBitFields: false
AlignConsecutiveDeclarations: true
AlignConsecutiveMacros: true
#llvm10-11: AlignOperands: true - Align
#llvm11: AllowShortEnumsOnASingleLine: true
AllowShortFunctionsOnASingleLine: None
AlwaysBreakAfterReturnType: AllDefinitions
# Can enable the following section when llvm 12.x is out
#AttributeMacros:
# - H5_ATTR_FORMAT
# - H5_ATTR_UNUSED
# - H5_ATTR_DEPRECATED_USED
# - H5_ATTR_NDEBUG_UNUSED
# - H5_ATTR_DEBUG_API_USED
# - H5_ATTR_PARALLEL_UNUSED
# - H5_ATTR_PARALLEL_USED
# - H5_ATTR_NORETURN
# - H5_ATTR_CONST
# - H5_ATTR_PURE
# - H5_ATTR_FALLTHROUGH
ForEachMacros: ['ALL_MEMBERS', 'UNIQUE_MEMBERS']
IncludeCategories:
- Regex: '^"(llvm|llvm-c|clang|clang-c)/'
Priority: 3
SortPriority: 0
- Regex: '^(<|"(gtest|gmock|isl|json)/)'
Priority: 4
SortPriority: 0
- Regex: '.*'
Priority: 0
SortPriority: 0
- Regex: '^H5*.*'
Priority: 1
SortPriority: 0
- Regex: 'private.*'
Priority: 2
SortPriority: 0
IncludeIsMainRegex: '(public)?$'
IndentCaseLabels: true
#llvm11: IndentCaseBlocks: false
IndentGotoLabels: false
#llvm11: IndentExternBlock: AfterExternBlock
#llvm11: InsertTrailingCommas: None
MacroBlockBegin: "^BEGIN_FUNC"
MacroBlockEnd: "^END_FUNC"
ObjCBlockIndentWidth: 4
#llvm11: ObjCBreakBeforeNestedBlockParam: true
ReflowComments: true
SortIncludes: false
StatementMacros:
- FUNC_ENTER_API
- FUNC_LEAVE_API
- FUNC_ENTER_NOAPI_NOINIT_NOERR
- FUNC_LEAVE_NOAPI
- H5_BEGIN_TAG
- HGOTO_DONE_TAG
- H5_END_TAG
- HSYS_DONE_ERROR
- HSYS_GOTO_ERROR
- HDONE_ERROR
- HERROR
- H5_LEAVE
- H5E_PRINTF
- H5E_THROW
- HGOTO_DONE
- HGOTO_ERROR
- HMPI_ERROR
- HMPI_DONE_ERROR
- HMPI_GOTO_ERROR
- H5_GCC_DIAG_OFF
- H5_GCC_DIAG_ON
- CATCH
#llvm10: TypenameMacros:
#llvm10: - STACK_OF
#llvm10: - LIST
#llvm11: WhitespaceSensitiveMacros:
#llvm11: - STRINGIZE
#llvm11: - PP_STRINGIZE
---
Language: Java
BreakAfterJavaFieldAnnotations: true
JavaImportGroups: ['java', 'hdf', 'hdf.hdf5lib', 'org']
...
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