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243 Commits

Author SHA1 Message Date
Dana Robinson
b2d917437d Minor refactoring based on 1.10 normalization work 2020-08-17 09:12:59 -07:00
Allen Byrne
57c4aeb0cc TRILABS-277 Use JIRA number as #ifdef 2020-08-15 17:25:22 -05:00
Allen Byrne
2d659de898 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop) 
* commit '40bf112b56c90b7e90c9ec3d7a35a78d1d12288b':
  Trivialities noticed while merging things to 1.10
 2020-08-15 12:04:56 -05:00
Dana Robinson
c5b1765940 Trivialities noticed while merging things to 1.10 2020-08-15 07:32:50 -07:00
Allen Byrne
500d87fd1f HDFFV-9984 Add options to merge/prune external links during repack 2020-08-14 12:16:58 -05:00
Dana Robinson
5ce2a17804 Removes staff email addresses from the repository 
Removes redundant C library headers from hl library
 2020-08-06 17:58:07 -07:00
Dana Robinson
65e92e1d56 Warning fixes in tools and h5test.c 2020-08-05 17:15:57 -07:00
Dana Robinson
b9de162eae Minor normalizations with 1.12 branch 2020-08-01 10:26:22 -07:00
Allen Byrne
ff4a9d0ec2 Warnings reduction in tools 2020-07-30 11:26:14 -05:00
Allen Byrne
bac0fc6309 Tools refactor 
Move error_stack setup to tools library
Add structure for h5dump properties
Eliminate duplicated h5diff functions
Use properties structure in place of argument lists.
 2020-07-15 11:20:16 -05:00
vchoi
c597bd50d2 Fix for HDFFV-10961: add description to usage for --increment option. 2020-06-11 13:17:35 -05:00
Jordan Henderson
0644921cc2 Merge branch 'develop' of ssh://bitbucket.hdfgroup.org:7999/~jhenderson/hdf5 into develop 2020-04-27 18:57:47 -05:00
Jordan Henderson
2442de3389 Fix memory error in h5dump xml 'escape the string' routine 2020-04-27 18:57:36 -05:00
Quincey Koziol
4186e0d5be Merge pull request #2540 in HDFFV/hdf5 from extend_h5debug to develop 
* commit '3f3363177d5cc1efc8fcfc70e1feed7a293da2d4':
  Range check # of 'extra' command-line parameters against array size.
  Refactor "extra" command-line arguments, and clean up code so the tool doesn't assert when exiting.
  Extend h5debug to support 3-D datasets for chunks.
 2020-04-27 18:48:32 -05:00
Dana Robinson
c03ee563f4 Further updates to the tools warnings fixes from code review. 2020-04-27 08:50:27 -07:00
Dana Robinson
de3bfa697a Updates to tools warning PR from code review. 2020-04-26 02:54:29 -07:00
Quincey Koziol
3f3363177d Range check # of 'extra' command-line parameters against array size. 2020-04-25 22:52:52 -05:00
Quincey Koziol
c18ed719ec Refactor "extra" command-line arguments, and clean up code so the tool doesn't 
assert when exiting.
 2020-04-25 20:48:32 -05:00
Dana Robinson
a8676d74d9 Fixes for warnings in the tools code. 2020-04-25 16:49:04 -07:00
Quincey Koziol
ed833f1c8d Extend h5debug to support 3-D datasets for chunks. 2020-04-24 21:13:31 -05:00
Dana Robinson
1db039d1be Merge pull request #2532 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor to develop 
* commit '785bd0975ba13c3033820d0fc809da963fcd54ca':
  Fixed h5diff command-line parameters to use 1 and 2 instead of src and dst.
  Added VOL command-line options to (p)h5diff, h5ls, h5dump, and h5mkgrp.
 2020-04-22 19:07:48 -05:00
Dana Robinson
785bd0975b Fixed h5diff command-line parameters to use 1 and 2 instead of src 
and dst.
 2020-04-22 16:49:52 -07:00
Dana Robinson
8cd9d8349e Added VOL command-line options to (p)h5diff, h5ls, h5dump, and h5mkgrp. 2020-04-21 11:36:10 -07:00
Dana Robinson
729ad25bdf Merge pull request #2530 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor to develop 
* commit 'c6097935d5be4c3750b9bf9167783ad28158905b':
  Separated VFD and VOL parameters in tools.
 2020-04-21 08:49:15 -05:00
Dana Robinson
c6097935d5 Separated VFD and VOL parameters in tools. 2020-04-20 17:38:45 -07:00
Quincey Koziol
9e5dbf6906 Trim trailing whitespace 2020-04-20 18:12:00 -05:00
Dana Robinson
9ecca22dd1 Fixed problems with S3 and HDFS VFDs. 
* Updated info struct parameter to correct info_string
* Fixed Makefile.am where the S3 VFD was listed twice, causing
  duplicated symbols errors.
 2020-04-16 17:07:21 -07:00
Dana Robinson
2188e7d731 Update h5repack long arguments for id-->value changes. 2020-04-14 05:16:01 -07:00
Dana Robinson
28d2596f65 Changed identifiers and command-line options from "id" to "value" in tools 
code to be in agreement with H5VL API terminology.
 2020-04-14 04:31:01 -07:00
Dana Robinson
d86089f583 Added support for passing connector info strings via the command 
line to the tools internals.
 2020-04-09 08:40:41 -07:00
Dana Robinson
35c0d5cdfc Fix for passthrough VOL not passing tools tests due to incorrect 
optional callback queries.
 2020-04-08 16:44:19 -07:00
Allen Byrne
fd18d013f1 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop) 
* commit '4830a1796441abbb5a4fbd2cff9a651f2a0d066e':
  Updated tools dump output when dataset offset is undefined.
  Added checks for native optional call support in some of the tools.
  Misc changes for h5dump VOL changes.
 2020-04-06 14:13:27 -05:00
Dana Robinson
110cafb9c7 Merge branch 'develop' into tools_vol_update 2020-04-06 09:38:00 -07:00
Allen Byrne
57f5d00a43 TRILAB-192 add c++ and fortran warnings build systems one file 2020-04-05 10:50:08 -05:00
Dana Robinson
1c85473766 Fixed unnecessary H5R casts in the tools that were raising warnings. 2020-04-02 03:57:05 -07:00
Dana Robinson
456308ff17 Added checks for native optional call support in some of the tools. 2020-04-02 02:12:19 -07:00
Dana Robinson
3cd1b46b9c Merge branch 'develop' into tools_vol_update 2020-04-01 23:27:08 -07:00
Dana Robinson
b1533616f2 Minor renaming in the tools code. 2020-03-31 16:58:24 -07:00
Dana Robinson
816a12f04f Merge branch 'develop' into tools_vol_update 2020-03-31 03:43:03 -07:00
Gerd Heber
a46f31c2eb Merge pull request #2479 in HDFFV/hdf5 from ~GHEBER/hdf5:bugfix/HDFFV-11065 to develop 
* commit '2dfc047bc4aca7c13bccf44da97bff026cbbf5a6':
  Fix for HDFFV-11065.
 2020-03-30 11:26:14 -05:00
Dana Robinson
c36b707578 Merge branch 'tools_vol_update' of https://bitbucket.hdfgroup.org/scm/~derobins/hdf5_der into tools_vol_update 2020-03-30 01:52:21 -07:00
Dana Robinson
36e8e2be4b Misc changes for h5dump VOL changes. 2020-03-30 01:51:36 -07:00
Gerd Heber
2dfc047bc4 Fix for HDFFV-11065. 2020-03-29 16:04:58 -05:00
Jordan Henderson
9676029742 Fix latent bug in h5repack options file reading 
Add 'enable-error-stack' option to h5format_convert
 2020-03-29 12:37:14 -05:00
Dana Robinson
2dd6075c7a Minor renaming in h5dump (addr --> token) 2020-03-27 17:17:00 -07:00
Jordan Henderson
d5bbf3d408 Merge pull request #2469 in HDFFV/hdf5 from tools_vol_update to develop 
* commit 'ea952b25ba0fd5c4b5f60a94e75a1b5b78e66172':
  A few small tweaks to the tools from review
  Replace usage of some standard library functions with HD- versions
  Update Tools library to be better compatible with VOL connectors
 2020-03-27 13:14:22 -05:00
Jordan Henderson
ea952b25ba A few small tweaks to the tools from review 2020-03-27 10:48:11 -05:00
Jordan Henderson
6d514db55a Replace usage of some standard library functions with HD- versions 2020-03-26 15:26:39 -05:00
Allen Byrne
27b23c8d52 Add extensive warnings to tools executables 2020-03-25 10:19:09 -05:00
Jordan Henderson
fa087c3919 Update Tools library to be better compatible with VOL connectors 
Modify h5repack to integrate with VOL connectors

Update tools library to accomodate VOL connectors

Update logic in h5tools_fopen for VOL connectors

Add command-line options to h5repack for specifying in/out VOL
connectors

Implement h5tools_set_vol_fapl

Fix library shutdown issue

Integrate ROS3 and HDFS VFDs into new h5tools_get_fapl() scheme

Avoid H5Ocopy in h5repack when using different VOL connectors

Update h5tools_test_utils.c for ROS3 and HDFS integration
 2020-03-17 14:25:36 -05:00