Purpose:
Bug fix
Description:
modi4 dies during build with strange errors.
The root cause of these is a two-year-old hack in HDF5's libtool
script that only takes effect on IRIX.
Solution:
Edited the libtool hack (by editing ltmain.sh) to correct a bug in
the hack.
Also made sure that compiler-specific DEFAULT_LIBS are used
when linking.
Platforms tested:
sleipnir, copper, modi4, sol
Bug fix
Description:
Arabica exhibited strange errors when linker found wrong versions of
header files. This happened because include directories were
given to linker in the wrong order.
Solution:
Move include directories from AM_CFLAGS variable to INCLUDES
variable to put them before CPPFLAGS variable. Trust me, it works.
This bug may also have contributed to strange errors on other platforms
(kelgia?).
Platforms tested:
copper, sleipnir, arabica.
(h5dump broke while building on arabica, but this happened in
a clean checkout, too).
Bug fix
Description:
pmake (on modi4, for instance) complains about undefined variables
if it is run without the -V flag, which turns those errors to warnings.
Solution:
Added test to configure.in to see if $MAKE will allow Makefiles
with undefined variables. If not, sets -V flag in AM_MAKEFLAGS.
Ensured that all custom make targets use AM_MAKEFLAGS.
Also defined all variables that caused errors in top-level Makefile.am.
This means that pmake can be used to build hdf5 *from the top level
only*. To run make from a subdirectory, still need to use -V flag
(or use make or gmake).
Platforms tested:
modi4, heping, copper, sleipnir
Purpose:
Bug fix
Description:
Parallel builds were breaking in tools/lib
Solution:
talign didn't realize it depended on libh5tools.la because its
dependencies listed the full path (../../tools/lib/libh5tools.la).
Changed this, and made similar changes in a couple of other
directories.
This checkin should also add the --foreign flag to every Makefile.in
Platforms tested:
sleipnir (minor change)
New feature
Description:
Add basic code for new B-tree implementation. They don't do much yet,
aren't hooked up to anything yet and the format may change, but I'd like to
start getting them into the daily tests.
Platforms tested:
FreeBSD 4.11 (sleipnir) w/parallel
Too minor to require h5committest
Bug fix
Description:
Found the permanant fix to automake/CVS dependency problem
Solution:
Added AM_MAINTAINER_MODE macro to configure.in.
Now automake will never try to regenerate Makefiles, Makefiles.in,
configure, H5config.h, etc. when they are out of date, nor will it
print any warnings.
Developers should be very very careful to use reconfigure script,
and can add --enable-maintainer-mode flag to configure on heping
to regenerate these files correctly.
Platforms tested:
heping sleipnir copper
Bug fix
Description:
Configuration files' timestamps were incorrect.
Solution:
Update Makefiles.in. Also added correct paths to autotools on heping,
so heping build should be able to re-generate configuration files even
if they are still broken.
Platforms tested:
sleipnir
Bug fix
Description:
Dependencies between configure files (aclocal, configure.in, configure,
Makefiles.am and .in) are still causing Makefiles to try to run autotools
during build.
Solution:
Committed all Makefiles.in to update their timestamps.
As a temporary measure, forcibly prevented automake from running
autotools during build by redefining the variables it uses.
Platforms tested:
sleipnir (No changes to Makefile content)
Bug fix
Description:
Different compilers use different flags to include Fortran module files
Solution:
Changed boilerplate to use configure variable rather than hardcoded -M flag.
Platforms tested:
sleipnir, sol, copper
Configuration feature
Description:
HDF5 now uses automake to generate Makefiles
Solution:
Makefile.in files are now generated from Makefile.am files.
To reconfigure (after chaning a Makefile.am or configure.in):
/bin/sh bin/reconfigure.sh
Platforms tested:
Many
Bug fix
Description:
Correctly retire the H5E_LEN setting, now that the FORTRAN and C++ APIs
have been corrected to not use it either.
Solution:
Pass in the string buffer length for FORTRAN
In the C++ API, call H5Eget_msg() in a manner similar to the way
H5Fget_name() is called.
Platforms tested:
Linux 2.4 (heping) w/FORTRAN & C++
Solaris 2.7 (arabica) w/FORTRAN & C++
Bug Fix/Code Cleanup/Doc Cleanup/Optimization/Branch Sync :-)
Description:
Generally speaking, this is the "signed->unsigned" change to selections.
However, in the process of merging code back, things got stickier and stickier
until I ended up doing a big "sync the two branches up" operation. So... I
brought back all the "infrastructure" fixes from the development branch to the
release branch (which I think were actually making some improvement in
performance) as well as fixed several bugs which had been fixed in one branch,
but not the other.
I've also tagged the repository before making this checkin with the label
"before_signed_unsigned_changes".
Platforms tested:
FreeBSD 4.10 (sleipnir) w/parallel & fphdf5
FreeBSD 4.10 (sleipnir) w/threadsafe
FreeBSD 4.10 (sleipnir) w/backward compatibility
Solaris 2.7 (arabica) w/"purify options"
Solaris 2.8 (sol) w/FORTRAN & C++
AIX 5.x (copper) w/parallel & FORTRAN
IRIX64 6.5 (modi4) w/FORTRAN
Linux 2.4 (heping) w/FORTRAN & C++
Misc. update:
Port
Description:
Initial work for supporting GNU FORTRAN/F95 on FreeBSD. I think I've
got things mostly set up correctly, but I'm getting an internal compiler
error on one of the FORTRAN sources, so I'm not going to add this configuration
to the daily tests yet.
Platforms tested:
FreeBSD 4.10 (sleipnir) w/GNU FORTRAN
Not tested in h5committest
Bug fix
Description:
Correct/update detection of Linux platforms.
Also, refactor common code out of different architectures for Linux builds.
Platforms tested:
Linux 2.4 (verbena)
Too minor to require h5commitest
Bug fix
Description:
Correct typedef for dataset region references to avoid struct alignment
issues on Crays.
Solution:
Change the typedef for hdset_reg_ref_t from a struct to an array of
unsigned char's of the correct size and propagate the appropriate adjustments
around the code.
Platforms tested:
FreeBSD 4.10 (sleipnir)
Linux 2.4 (verbena) w/fortran
Cray T90 (subzero) w/fortran
Cray SV1 (wind) w/fortran & parallel
Cray T3E (cyclone) w/fortran & parallel
Description: Restore 6 old error API functions back to the library to be backward
compatible with v1.6. They are H5Epush, H5Eprint, H5Ewalk, H5Eclear, H5Eset_auto,
H5Eget_auto. These functions do not have error stack as parameter.
Solution: Internally, these functions use default error stack.
Platforms tested: h5committest and fuss.
Misc. update: RELEASE.txt
Description: Added PGI Fortran support for Linux64 systems (x86_64)
Solution:
Platforms tested: AMD Opteron box at AMD Sunnyvale and verbena
with PGI and gcc compilers.
Misc. update:
Purpose: Maintenance for MAC OSX
Description: Added support for Absoft Fortran compiler f95;
Ddefault compiler is set to IBM xlf.
Solution:
Platforms tested: pommier with xlf and Absoft f95 compilers
Misc. update:
Purpose: Maintenance
Description: Added h5fget_name_f and h5fget_filesize_f subroutines and tests.
Solution: N/A
Platforms tested: arabica (32-bit), sol (64-bit)
parallle build on copper failed for the C library with the the
following error:
ld: 0711-317 ERROR: Undefined symbol: .H5FD_stdio_term
Since this change doesn't affect the C library, I am cheking it in
and will retest the fresh CVS copy after this check-in.
Misc. update:
Bug Fix.
Description:
nh5zget_filter_info_c function was not declcared as H5_FCDLL, which is
required for fortran dll in Windows. _H5ZGET_FILTER_INFO_C is considered
as an unresolved external symbol by Fortran Compiler in Windows without
H5_FCDLL.
Solution:
Added H5_FCDLL for nh5zget_filter_info_c function.
Platforms tested:
DEC Fortran 6.0 in Windows XP.
Misc. update:
Purpose: Maintenance
Description: H5_SZIP_CHIP_OPTION_MASK was deleted from the list
of the available parameters for the H5Pset_szip function.
Solution: Updated Fortran source, tests and documentation
to reflect this change.
Platforms tested: arabica (too small for h5committest)
Misc. update:
Purpose:
HDF5 now supports SZIP with no encoder.
Description:
SZIP can be configured to have both encoder and decoder or just to have the decoder. HDF5 can now query the configuration of any filter, and will throw errors if users try to write using a filter with encoding disabled.
Solution:
Added H5Zget_filter_info function, changed API for H5Pget_filter and H5P_get_filter_by_id. See SZIP RFC.
Platforms tested:
Copper (fortran, C++, parallel), Sleipnir (C++), Arabica (fortran, C++), Verbena (fortran, C++)
Misc. update:
Fixing Fortran DLL on windows
Description:
Need to use another macro H5_FCDLL to build fortran C stub library.
change all H5_DLL to H5_FCDLL in file H5fproto.h.
Solution:
see above.
Platforms tested:
eirene(fortran),
arabica(fortan)
Misc. update:
Purpose: Maintenance
Description: h5dwrite/read_f and h5awrite_read_f functions were overloaded
with dims argument being of type INTEGER and INTEGER(HSIZE_T).
We promised to remove overloading in 1.4 release. It was
removed from documentation but not from the source code.
Solution: Finish code cleanup.
Platforms tested: Solaris 2.7 32 and 64 bit, and copper with --enable-
parallel. Windows are broken, so Kent and Xuan
will test it with their changes later.
Misc. update:
Code cleanup
Description:
Clean up lots of warnings based on those reported from the SGI compilers
as well as gcc.
Platforms tested:
SGI O3900, IRIX64 6.5 (Cheryl's SGI machine)
FreeBSD 4.9 (sleipnir) w/ & w/o parallel
h5committest
Purpose:
replaced name of delete filter with remove filter for the new function H5Premove_filter
Description:
Solution:
Platforms tested:
linux
Misc. update:
Code cleanup
Description:
Add C++ and FORTRAN wrappers for new H5Pdelete_filter routine, along with
documentation and a note in the release notes.
Platforms tested:
FreeBSD 4.9 (sleipnir)
Linux 2.4 (verbena) w/ C++ and FORTRAN
Too minor for full h5committest
Feature
Description:
Added option -showconfig which Shows the HDF5 library configuration summary
Platforms tested:
No h5committest test which does not test these tools.
Tested in eirene by hand.
Misc. update:
Bug fix
Description:
When two property lists are compared, the H5Pequal routine was just
comparing the raw information for the property values. This causes problems
when the raw information contains pointers to other information.
Solution:
Allow a 'compare' callback to be registered for properties, so that a user
application get perform the comparison itself, allowing for "deep" compares of
the property value.
This was exported to the H5Pregister & H5Pinsert routines in the development
branch, but not the release branch.
Platforms tested:
FreeBSD 4.9 (sleipnir)
h5committest
Purpose: Maintenance
Description: Fortran APIs MAC OS X port for IBM XL Fortran compiler
Solution: Brought back changes from 1.6 branch
Platforms tested: pommier, h5comittested; this time h5committest
complained about copperpp directory and didn't run;
tests on verbena and sol passed.
Misc. update:
Code cleanup
Description:
Start stripping leftovers from HDF4 out of this file, working toward
getting everything defined at configure time, instead of depending on the
framework of ifdef's used in HDF4.
Platforms tested:
h5committest
Purpose: Rolling over changes from 1.6 branch
Description: h5pget(set)_cache_f functions had a wrong type of the
third parameter
Solution: Fixed the type to be INTEGER(SIZE_T)
Platforms tested: kelgia, arabica 64-bit, copper 64-bit
Misc. update:
Code cleanup
Description:
Cleaned up various compiler warnings
Platforms tested:
FreeBSD 4.9 (sleipnir)
Linux 2.4 (verbena) w/FORTRAN
too minor for h5committest
Code cleanup
Description:
Removed "H5Git" routines, now that there are library routines which perform
the same functionality.
Platforms tested:
FreeBSD 4.9 (sleipnir)
Linux 2.4 (verbena) w/FORTRAN
too minor for h5committest
Purpose: Bug fix
Description: Parameter rdcc_nelmts of the h5pget_cache_f subroutine
had wrong INTEGER(SIZE_T) instead of INTEGER type.
Solution: Fixed the type
Platforms tested: arabica in 64-bit mode (where INTEGER(SIZE_T) is not
the same as INTEGER)
Misc. update:
