Bug fix
Description:
Dependencies between configure files (aclocal, configure.in, configure,
Makefiles.am and .in) are still causing Makefiles to try to run autotools
during build.
Solution:
Committed all Makefiles.in to update their timestamps.
As a temporary measure, forcibly prevented automake from running
autotools during build by redefining the variables it uses.
Platforms tested:
sleipnir (No changes to Makefile content)
Bug fix
Description:
Different compilers use different flags to include Fortran module files
Solution:
Changed boilerplate to use configure variable rather than hardcoded -M flag.
Platforms tested:
sleipnir, sol, copper
Configuration feature
Description:
HDF5 now uses automake to generate Makefiles
Solution:
Makefile.in files are now generated from Makefile.am files.
To reconfigure (after chaning a Makefile.am or configure.in):
/bin/sh bin/reconfigure.sh
Platforms tested:
Many
Description:
+ C tests' macro VERIFY casts values to 'long' for all cases. Since
there are no operator<< for 'long long' or int64 in VS C++ ostream,
I casted the hsize_t/hssize_t values passed to verify_val to 'long'
as well. If problems arise later, this may have to be specificly
handled with an overload - th5s.cpp
+ Added the use of InvalidActionException for when an action
should cause an exception but didn't - th5s.cpp and tfile.cpp
+ Small changes to improve failure reports
Platforms tested:
SunOS 5.7 (arabica)
Linux 2.4 (eirene)
Description:
H5PredType copy constructor was made "protected" accidentally.
Solution:
Moved it back into "public" section.
Platforms tested:
Linux 2.4 (eirene)
Very minor and already tested on two platforms in 1.6 branch.
Bug fix
Description:
Correctly retire the H5E_LEN setting, now that the FORTRAN and C++ APIs
have been corrected to not use it either.
Solution:
Pass in the string buffer length for FORTRAN
In the C++ API, call H5Eget_msg() in a manner similar to the way
H5Fget_name() is called.
Platforms tested:
Linux 2.4 (heping) w/FORTRAN & C++
Solaris 2.7 (arabica) w/FORTRAN & C++
Description:
+ replaced "goto error" with throw exceptions
+ properly cleanup dynamically allocated memory in failure cases,
for in some cases, the execution continues on after the failures
were reported.
+ added test utility class InvalidActionException for when an action
should cause an exception but doesn't.
Platforms tested:
SunOS 5.7 (arabica)
Linux 2.4 (eirene)
Note that there was an error due to the missing symbol H5E_LEN. To
be able to test my changes, I temporarily replaced H5E_LEN in c++/src
with a constant as in the C tests, before the problem can be fixed.
This value doesn't effect the C++ tests at all, at this time.
Description:
C tests' macro VERIFY casts values to 'long' for all cases. Since
there are no operator<< for 'long long' or int64 in VS C++ ostream,
I casted the hsize_t/hssize_t values passed to verify_val to 'long'
as well. If problems arise later, this may have to be specificly
handled with an overload.
Platforms tested:
Linux 2.4 (eirene)
Windows 2000
Bug Fix/Code Cleanup/Doc Cleanup/Optimization/Branch Sync :-)
Description:
Generally speaking, this is the "signed->unsigned" change to selections.
However, in the process of merging code back, things got stickier and stickier
until I ended up doing a big "sync the two branches up" operation. So... I
brought back all the "infrastructure" fixes from the development branch to the
release branch (which I think were actually making some improvement in
performance) as well as fixed several bugs which had been fixed in one branch,
but not the other.
I've also tagged the repository before making this checkin with the label
"before_signed_unsigned_changes".
Platforms tested:
FreeBSD 4.10 (sleipnir) w/parallel & fphdf5
FreeBSD 4.10 (sleipnir) w/threadsafe
FreeBSD 4.10 (sleipnir) w/backward compatibility
Solaris 2.7 (arabica) w/"purify options"
Solaris 2.8 (sol) w/FORTRAN & C++
AIX 5.x (copper) w/parallel & FORTRAN
IRIX64 6.5 (modi4) w/FORTRAN
Linux 2.4 (heping) w/FORTRAN & C++
Misc. update:
Description:
Accidentally edited this file and removed a couple characters from a
defined name, thus caused undefined error in daily test. Fixed!
Platforms tested:
SunOS 5.7 (arabica)
Description:
Replaced cout's with cerr's.
Replaced macro VERIFY with template function verify_val to
verify read data/info.
Cleanup various places in the tests to make them more consistent.
Platforms tested:
SunOS 5.7 (arabica)
Linux 2.4 (eirene)
Description:
Xuan reported that "uint" used in this example caused error when
built with MS Visual Studio compiler.
Solution:
Changed to "int."
Platforms tested:
Very minor, so I only tested on eirene. I'll let Xuan know
to check on Windows.
Misc. update:
Code cleanup
Description:
Tweak recent "forward compatibility" changes to the H5E* API (which allowed
for the old H5E API functions to remain unchanged) by allowing for the error
stack callback function (H5E_auto_t) to also remain unchanged from the 1.6
branch. This required changing the H5E{get|set}_auto routines to have the
old style H5E_auto_t type (which didn't have a stack ID parameter) and the new
H5E{get|set}_auto_stack routines to have a newer "H5E_auto_stack_t" type (which
has a stack ID parameter). This should make the H5E API changes as forwardly
compatible as possible.
One side-affect of this change was that it was impossible to determine if
the current auto error callback was the old style (H5E_auto_t) or the new style
(H5E_auto_stack_t) of callback, so a new API function (H5Eauto_is_stack) was
adde to query this.
Platforms tested:
FreeBSD 4.10 (sleipnir)
IRIX64 6.5 (modi4)
h5committest
Description: Restore 6 old error API functions back to the library to be backward
compatible with v1.6. They are H5Epush, H5Eprint, H5Ewalk, H5Eclear, H5Eset_auto,
H5Eget_auto. These functions do not have error stack as parameter.
Solution: Internally, these functions use default error stack.
Platforms tested: h5committest and fuss.
Misc. update: RELEASE.txt
Description:
The private function p_close was removed previously, but I
inadvertently put it back in a few places, while transferring
the changes from 1.6 branch. These are removed now.
Platforms tested:
SunOS 5.7 (arabica)
Linux 2.4 (eirene)
Description:
Updated various function headers for the RM as reviewing progresses.
Rearranged functions in header files for more sensible look of the RM.
Platforms tested:
SunOS 5.7 (arabica)
Linux 2.4 (eirene)
Description:
Added wrappers for H5Fget_name:
H5File::getFileName
H5Object::getFileName
Moved some functions from Group into the base class CommonFG for
H5File too.
Platforms tested:
SunOS 5.7 (arabica)
Linux 2.4 (eirene)
feature
Description:
Another revamp of the test interface.
TestInit: is used to register Test Program name, test program specific
Usage and option parsing routines.
TestUsage: will invoke extra usage routine if provided.
TestParseCmdLine: will invoke extra option parsing routine if provided.
GetTestSummary() and GetTestCleanup() replaces the previous Summary and
CleanUp arguments of TestParseCmdLine.
test/testhdf5, test/ttsafe.c, testpar/t_mpi.c, testpar/testphdf5.c:
All have been updated to use the new Test Routines.
testpar/t_mpi.c:
Also a fix of a compiler optimization bug when pgcc in Linux is
used to compile it. Changed buf[] and expected to unsigned char
type to avoid a bug that failed to do sign-extension.
Platforms tested:
"h5committested"
Also tested thread-safe option in eirene.
Description:
Added an argument to the call to TestParseCmdLine because its
prototype has just been changed.
Platforms tested:
SunOS 5.7 (arabica)
Linux 2.4 (eirene)
Misc. update:
Description:
Removed private functions p_close, that were left over from the
removal of the reference counting mechanism.
Platforms tested:
SunOS 5.7 (arabica)
Linux 2.4 (eirene)
Misc. update:
release_docs/RELEASE will be updated soon.
Add new files
Description:
Added H5VarLenType.cpp and H5ArrayType.cpp to LIB_SRC
Added H5CppDoc.h, H5VarLenType.h, and H5ArrayType.h to PUB_HDR
Platforms:
SunOS 5.7 (arabica)
Linux 2.4 (eirene)
Code cleanup
Description:
DataType::commit had incorrect parameter, H5Object. Changed
it to CommonFG, for H5File and Group.
The change caused additional header files needed for several
other cpp files.
Moved some functions from Group into the base class CommonFG for
H5File too.
Platforms tested:
SunOS 5.7 (arabica)
Linux 2.4 (eirene)
Misc. update:
Description:
Added mainpage to the RM via the new file H5CppDoc.h.
Platforms tested:
SunOS 5.7 (arabica)
Linux 2.4 (verbena)
This new file will be added to windows project soon.
Misc. update:
Description:
Changed call to H5File::getFileSize according to C library and
removed CHECK for this call because failure will be handled by
exception.
Platforms tested:
FreeBSD 4.10 (sleipnir)
Linux 2.4 (eirene)
Description:
Added function headers with doxygen.
Changed H5File::getFileSize according to C library.
Platforms tested:
Linux 2.4 (eirene)
FreeBSD 4.10 (sleipnir)
Misc. update:
Description:
H5IdComponent.cpp: initialized a pointer to NULL
H5Object.cpp: removed functions being added by mistake
Update function headers for the rest.
Platforms tested:
SunOS 5.7 (arabica)
Linux 2.4 (eirene)
Description:
Removed macro H5_FILES from Makefile.in so that output files from the
example programs will not be installed.
Platforms tested:
Linux 2.4 (eirene)
SunOS 5.7 (arabica)
Description:
These data files are generated by the example programs and shouldn't
need to be in the CVS. Removed them.
Platforms tested:
SunOS 5.7 (arabica)
Linux 2.4 (eirene)
Code cleanup
Description:
Clean up almost all warnings from Windows builds.
Platforms tested:
FreeBSD 4.10 (sleipnir) w/parallel
Too minor to require h5committest
Purpose:
HDF5 now supports SZIP with no encoder.
Description:
SZIP can be configured to have both encoder and decoder or just to have the decoder. HDF5 can now query the configuration of any filter, and will throw errors if users try to write using a filter with encoding disabled.
Solution:
Added H5Zget_filter_info function, changed API for H5Pget_filter and H5P_get_filter_by_id. See SZIP RFC.
Platforms tested:
Copper (fortran, C++, parallel), Sleipnir (C++), Arabica (fortran, C++), Verbena (fortran, C++)
Misc. update:
Description: Added new API H5Fget_name and new test program called filename.c. This function
returns the name of the file by object ID(file, group, dataset, named datatype, and attribute)
which belongs to the file.
Platforms tested: h5committest and fuss.
Misc. update: MANIFEST and RELEASE.txt
Fixing minor bug
Description
The new function H5File::getFileSize was missing a return statement.
Added one.
Platforms:
SunOS 5.7 (arabica)
Linux 2.4 (eirene)
Description: 1. Added H5Fget_filesize and test(in file_handle.c) which returns
the actual file size of an opened file. Also added to C++ API and test.
2. The error tests were messed up in test/Makefile.in.
Solution: 1. Call H5FDget_eof to return file size. 2. Corrected.
Platforms tested: h5committest
Misc. update: RELEASE.txt
Code update
Description:
Update C++ wrappers to use new ID reference counting mechanisms.
Platforms tested:
FreeBSD 4.9 (sleipnir) w/C++
Too focused to require h5committest
Add/Improve documentation
Description
Added doxygen documentation to H5PredType.cpp and made minor changes
to the others for either correction or clarification.
Platforms:
SunOS 5.7 (arabica)
Linux 2.4 (eirene)
Misc. update:
Add more C++ wrapper and documentation - incrementally check-in
Description
Added another overloaded constructor to StrType.
Added doxygen documentation to H5IdComponent.cpp.
Corrected some comments.
This is an incremental check-in to preserve the code, corresponding
tests will follow in a few weeks.
Platforms:
SunOS 5.7 (arabica)
Linux 2.4 (eirene)
Misc. update:
Add C++ wrappers - incrementally check-in
Description
Added wrapper for these C APIs:
H5Rcreate
H5Rget_obj_type
H5Rget_region
This is an incremental check-in to preserve the code, corresponding
tests will follow in a few weeks.
Platforms:
Linux 2.4 (eirene)
I'm checking the code out and test on arabica too.
Misc. update:
Add C++ wrappers - incrementally check-in
Description
Added wrapper for these C APIs:
H5Dget_offset
H5Dget_space_status
Platforms:
SunOS 5.7 (arabica)
Linux 2.4 (eirene)
Misc. update:
Add another wrapper - incrementally check-in
Description:
Added an overloaded wrapper for H5Rcreate to H5Object.* and tests
will be added later. Also, corrected some comments.
Platforms:
SunOS 5.7 (arabica)
Linux 2.4 (eirene)
Misc. update:
Add more C++ wrapper and documentation - incrementally check-in
Description:
Added doxygen documentation to:
H5DataSet.cpp
H5DataSpace.cpp
H5CommonFG.cpp
and a wrapper for H5Rcreate to H5Object.* with tests will be added
later.
There are more documentation need to be added to these files but
to preserve the changes, I check them in now.
Platforms:
SunOS 5.7 (arabica)
Linux 2.4 (eirene)
Misc. update:
