Commit Graph

555 Commits

Author SHA1 Message Date
Mike McGreevy
73fde75a6c [svn-r20574] Bump soname interface number. This should have been bumped
in 1.8.6 when its API was changed, but since it wasn't I'm
manually fixing up these numbers in 1.8 and 1.8.7 branches
for the time being.
2011-04-20 13:28:46 -05:00
Mike McGreevy
2065dc05cc [svn-r20565] Update 1.8 branch version to 1.8.8-snap0 2011-04-20 11:41:42 -05:00
Allen Byrne
16ee48d983 [svn-r20541] Add missing prototypes for windows 2011-04-18 09:32:20 -05:00
Larry Knox
a99c68f3f9 [svn-r20534] Remove export from "export LD_LIBRARY_PATH=${LL_PATH}" in examples and hl/examples Makefiles. "export" breaks make install in Daily Tests on FreeBSD machines and isn't missed elsewhere.
Tested on amani, freedom, jam, koala, and loyalty.
2011-04-16 12:52:58 -05:00
Larry Knox
27a7f563f1 [svn-r20530] Updated configure.in to check for a non-empty LL_PATH in addition to using szip before attempting to export LL_PATH as LD_LIBRARY_PATH in the examples and hl/examples Makefiles. This fixes a probelm that caused make install or installcheck on FreeBSD machines.
Tested on freedom and jam.
2011-04-15 17:08:30 -05:00
Mike McGreevy
699098014b [svn-r20525] Description:
Merge revisions 20475, 20502, and 20504 from trunk to 1.8 branch.

Tested:

    Tested on jam, fred, bangan (CYGWIN), and h5committested.
2011-04-15 15:41:32 -05:00
Scot Breitenfeld
755d168ff7 [svn-r20508] Checked in changes for fixing:
Bug 1752 - H5Lite Fortran APIs do not allow you to create 4 dimensional datasets (or greater)
           * Fixed and tested the integer, real, double routines for creating and reading 
             dimensional dataset with ranks 4-7

Bug 1939 - h5tbget_field_info_f
  * Fixed error in passing an array of characters with different length
    field names for h5tbmake_table.

  * Fixed error in h5tget_field_info_f with packing the C strings
    into a fortran array of strings.

  * Added optional arguement to h5tbget_field_info_f called maxlen
    which returns the maximum string character length in a field name
    element.

  * Uncommented out test for h5tbget_field_info_f in the test program
    and added additional checks for the output.

Tested: jam (intel, gnu compilers)
2011-04-15 11:58:26 -05:00
Larry Knox
30fee2b4da [svn-r20479] Fixed issue HDFFV-5866 (BZ 2156). Changed scripts to run examples to use specific names for compiled executable files instead of a.out, which did not work on Cywin as it produces a.exe by default. Removed issue from known problems section of RELEASE.txt.
Tested with h5committest and Cygwin 1.7.8 on Windows 7.
2011-04-12 11:19:22 -05:00
Allen Byrne
f8f0f91aae [svn-r20169] Correct name of tool from hdf2gif to h52gif. 2011-03-01 13:30:30 -05:00
Allen Byrne
7eb98436fc [svn-r20157] Bring CMake changes to branch up to r20156 from trunk 2011-02-25 09:33:50 -05:00
Allen Byrne
a7c2d480f3 [svn-r20143] Correct misplaced bracket 2011-02-22 10:14:11 -05:00
Allen Byrne
fbc311695b [svn-r20137] Correct hl/fortran/src INCLUDE_DIRECTORIES.
Add new efc files and projects to windows
2011-02-22 08:55:42 -05:00
Allen Byrne
78bce9b4b3 [svn-r20128] Add fortran mod folder to INCLUDE_DIRS for gfortran 4.2.x.
Add test dependicies to correct the order of tests - cmake 2.8.4 bug - but also will improve cmake parallel testing.

Tested: local linux, jam
2011-02-21 14:58:09 -05:00
Allen Byrne
1caf582a4b [svn-r20084] Add missing library reference
Tested: windows
2011-02-11 14:13:37 -05:00
Allen Byrne
e76b6e8bb1 [svn-r20082] DLL visibility names needed to be updated in cstub in windows using cmake
Tested: windows
2011-02-11 13:43:43 -05:00
Allen Byrne
c371688afe [svn-r20080] Remove obsolete lines (commented) after correcting Fortran handling in CMake files
Tested: local: linux
2011-02-10 16:25:50 -05:00
Allen Byrne
86327226cc [svn-r20079] Correct Fortran handling in CMake files
Tested: local: linux
2011-02-10 16:12:45 -05:00
Quincey Koziol
20b58606ca [svn-r20062] Description:
Bring r20061 from trunk to 1.8 branch:

    Bring changes from Coverity branch to trunk:

r19930:
Fix memory leaks involving VL attributes in h5repack and h5diff.  The buffers in
copy_attr and diff_attr were not checked for the presence of a vlen before being
freed, and vlen storage was never reclaimed.  Added checks and calls to
H5D_vlen_reclaim().

r19933:
Purpose: Fix memory leak in H5L_move_cb()

Description: H5L_move_cb copied the source link using H5O_msg_copy() but freed
it manually using H5MM_xfree().  Since H5O_link_copy allocates the link using
H5FL_MALLOC, this causes the link to be allocated from the free list but is
never put back on the free list when it is freed.  This prevents the link free
list from shutting down properly.  Modified H5L_move_cb() and H5L_move_dest_cb()
to free the link properly using H5O_msg_free().

r19973:
Fix resource leaks by freeing string created by HD5f2string

r19974:
Issue #345: Inialize buf variable to null

Tested on:
    Mac OS X/32 10.6.6 (amazon) w/debug & production
    (h5committested on Coverity branch)
2011-02-07 23:01:08 -05:00
Allen Byrne
982a7f0bcb [svn-r19913] Correct format of empty parameter
Tested: local linux
2011-01-05 13:26:55 -05:00
Allen Byrne
4b3bdd519c [svn-r19911] Change how LINK_FLAGS for fortran are appended on Windows - correct for just shared libs
bring r19910 from trunk
2011-01-05 10:04:35 -05:00
Allen Byrne
865cc51435 [svn-r19908] Change how LINK_FLAGS for fortran are appended on Windows 2011-01-05 09:45:09 -05:00
Allen Byrne
3771df0757 [svn-r19906] Windows: Correct how fortran links in CRT library. Also correct macro use for checking libtype.
Tested: Windows
2011-01-04 13:23:24 -05:00
Allen Byrne
8a7bf1ae4e [svn-r19898] Remove use of /MT compile flag for building static libs and programs. Added BUILT_AS_STATIC_LIBRARY define to set the windows import/export defines correctly for static libraries. 2010-12-30 09:03:15 -05:00
Allen Byrne
1914aff4f7 [svn-r19871] Add tests for examples.
Bring r19870 from trunk

Tested: local linux
2010-12-03 17:27:51 -05:00
Larry Knox
e48acc4119 [svn-r19862] Updated libtool to version 2.4, autoconf to version 2.68, and m4 to version 1.4.15.
Tested with h5committest on amani, jam and heiwa.
2010-12-01 10:12:06 -05:00
Quincey Koziol
d1117ac78c [svn-r19655] Description:
Bring r19654 from trunk to 1.8 branch:

Bring Coverity revisions from branch back to trunk, and clean up some other
misc. compiler warnings also.

r19500:
Fix coverity items 1446 and 1447.  Moved up calls to memset in test_cont in
ohdr.c so the test never tries to close uninitialized locations.

r19501:
Fix coverity items 1398-1445.  Various uninitialized variable errors in fheap.c.

r19502:
Fixed coverity issue 579 and some additional warnings in the file as well.

r19503:
Bug fix: This fix addressed the "RESOURCE_LEAK" problems #789 and 790, run 26

r19504:
minor mods to try to keep coverity from flagging false positives.

r19505:
Fixed coverity issues 566 - 571.  Declared variables that are passed to functions that use them as arrays to be arrays of size 1.


Tested on:
   Mac OS X/32 10.6.4 (amazon) w/debug, production & parallel
  (h5committested on coverity branch)
2010-10-21 09:08:13 -05:00
Larry Knox
6dbfc9d3ae [svn-r19529] Added line to config/examples.am to remove execute permission from example source files that are installed in .../share/hdf5_examples/. This will address bugzilla #2025.
Tested with h5committest on amani, heiwa, and jam.
2010-10-06 18:33:56 -05:00
Allen Byrne
c18db616e5 [svn-r19528] Add clear generated objects commands to test blocks.
Add configurefile command to copy CTestCustom to build folder.

Bring r19527 back from trunk

Tested: local linux
2010-10-06 15:51:02 -05:00
Allen Byrne
694c9065e0 [svn-r19510] Improve CMake support for CYGWIN.
Correct script comment in testh5diff.sh

Bring r19509 back from trunk

Tested: Windows Cygwin
2010-10-04 16:41:03 -05:00
Mike McGreevy
f8cd72f48a [svn-r19451] Update version of 1.8 branch to HDF5 1.8.7-snap0 2010-09-21 11:12:03 -05:00
Allen Byrne
7c7b4e3deb [svn-r19438] Correct use of lib, include, bin in INSTALL commands to use proper variables.
Tested: local linux
2010-09-20 16:02:26 -05:00
Larry Knox
696675029e [svn-r19408] In this revision the '/' after ${DESTDIR} wherever it occurs
has been removed. According to the official description of DESTDIR by Gnu at
http://www.gnu.org/prep/standards/html_node/DESTDIR.html, DESTDIR is
prepended to the normal and complete install path that it precedes for the
purpose of installing in a temporary directory which is useful for building
rpms and other packages.  The '/' after ${DESTDIR} will be followed by another
'/' at the beginning of the normal install path.  When DESTDIR is empty the
path then begins with '//', which is incorrect and causes problems at least for
Cygwin.

The change made in config/commence.am affects many Makefile.*s when bin/reconfigure
is run.  EXAMPLEDIRs had to be corrected individually.

Also the scripts to run examples after they are installed have checks added to see 
that the fortran and c++ directories are present before trying to run the scripts 
in them.

Tested with h5committest on amani, heiwa and jam.
2010-09-16 17:12:07 -05:00
Larry Knox
23bc2c0b38 [svn-r19371] Updated autoconf to version 2.6.7, libtool to version 2.2.10, and m4 to version 1.4.14. Also added m4 directory for m4 macros according to autoconf suggestion.
Tested with h5committest on amani, jam, and heiwa, and on linew.

-This line, and those below, will be ignored--

M    hdf5_1_8/test/Makefile.in
A    hdf5_1_8/m4
AM   hdf5_1_8/m4/ltsugar.m4
AM   hdf5_1_8/m4/libtool.m4
AM   hdf5_1_8/m4/ltversion.m4
AM   hdf5_1_8/m4/lt~obsolete.m4
AM   hdf5_1_8/m4/ltoptions.m4
M    hdf5_1_8/configure
M    hdf5_1_8/Makefile.in
M    hdf5_1_8/testpar/Makefile.in
M    hdf5_1_8/configure.in
M    hdf5_1_8/src/Makefile.in
M    hdf5_1_8/tools/Makefile.in
M    hdf5_1_8/tools/misc/Makefile.in
M    hdf5_1_8/tools/h5dump/Makefile.in
M    hdf5_1_8/tools/h5repack/Makefile.in
M    hdf5_1_8/tools/h5jam/Makefile.in
M    hdf5_1_8/tools/h5diff/Makefile.in
M    hdf5_1_8/tools/lib/Makefile.in
M    hdf5_1_8/tools/h5copy/Makefile.in
M    hdf5_1_8/tools/h5import/Makefile.in
M    hdf5_1_8/tools/h5stat/Makefile.in
M    hdf5_1_8/tools/h5ls/Makefile.in
M    hdf5_1_8/hl/test/Makefile.in
M    hdf5_1_8/hl/tools/Makefile.in
M    hdf5_1_8/hl/tools/gif2h5/Makefile.in
M    hdf5_1_8/hl/Makefile.in
M    hdf5_1_8/hl/src/Makefile.in
M    hdf5_1_8/hl/c++/test/Makefile.in
M    hdf5_1_8/hl/c++/Makefile.in
M    hdf5_1_8/hl/c++/src/Makefile.in
M    hdf5_1_8/hl/c++/examples/Makefile.in
M    hdf5_1_8/hl/fortran/test/Makefile.in
M    hdf5_1_8/hl/fortran/Makefile.in
M    hdf5_1_8/hl/fortran/src/Makefile.in
M    hdf5_1_8/hl/fortran/examples/Makefile.in
M    hdf5_1_8/hl/examples/Makefile.in
M    hdf5_1_8/config/commence.am
M    hdf5_1_8/MANIFEST
M    hdf5_1_8/c++/test/Makefile.in
M    hdf5_1_8/c++/Makefile.in
M    hdf5_1_8/c++/src/Makefile.in
M    hdf5_1_8/c++/examples/Makefile.in
M    hdf5_1_8/bin/ltmain.sh
M    hdf5_1_8/bin/reconfigure
M    hdf5_1_8/perform/Makefile.in
M    hdf5_1_8/fortran/test/Makefile.in
M    hdf5_1_8/fortran/testpar/Makefile.in
M    hdf5_1_8/fortran/Makefile.in
M    hdf5_1_8/fortran/src/Makefile.in
M    hdf5_1_8/fortran/examples/Makefile.in
M    hdf5_1_8/aclocal.m4
M    hdf5_1_8/examples/Makefile.in
2010-09-10 17:41:44 -05:00
Allen Byrne
ff47a7df1b [svn-r19362] Move Windows specific compile and link flags to macros 2010-09-09 11:31:46 -05:00
Allen Byrne
6717501b5c [svn-r19341] Added cmake tests for c++ examples
Tetsed: local linux
2010-09-02 15:57:41 -05:00
Allen Byrne
f65eec188f [svn-r19337] Change #ifndef _WIN32 to #ifdef H5_HAVE_UNISTD_H
Tested: windows, heiwa and local linux
2010-09-01 12:25:16 -05:00
Allen Byrne
c9cf76d5f9 [svn-r19326] Added parallel build commands.
Corrected use/name of source folder aliases.
Duplicated FindMPI.cmake so that non-c++ compiler is found first (recommemded commands did not work).
Bring r19325 from trunk

Tested: local linux with mpich
2010-08-31 15:20:12 -05:00
Quincey Koziol
d9af3b4fdf [svn-r19238] Description:
Bring r19237 from trunk to 1.8 branch:

	Clean up misc. compiler warnings.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        Mac OS X/32 10.6.4 (amazon) w/C++ & FORTRAN, w/threadsafe,
                in production mode
        Mac OS X/32 10.6.4 (amazon) w/parallel, in debug mode
2010-08-12 16:27:02 -05:00
Allen Byrne
5d82f0d79f [svn-r19220] Move hl fortran ADD_SUBDIRECTORY to right after fortran ADD_SUBDIRECTORY. This fixes a problem with compiler generated files not including target module directory on some linux machines.
Tested: local linux
2010-08-10 15:03:43 -05:00
Allen Byrne
9c21c3934a [svn-r19219] Corrected minor format/location of commands.
Tested: local linux
2010-08-10 14:35:44 -05:00
Allen Byrne
286b06971d [svn-r19036] Added executable Linker Flag for MSVC static builds: /NODEFAULTLIB:MSVCRT
Added VERSION vars for inclusion into auto snapshot version update script

Tested windows
2010-06-29 15:04:46 -05:00
Quincey Koziol
fc3de1ec79 [svn-r18916] Description:
Bring r18915 from trunk to 1.8 branch:

    Clean up a couple of compiler warnings (in Windows).

Tested on:
    Mac OS X/32 10.6.3 (amazon) w/debug
    (too minor to require h5committest)
2010-05-27 15:00:44 -05:00
Allen Byrne
087053398a [svn-r18913] Added missing fortran library in list of libraries.
Tested: Windows, local linux
2010-05-27 11:49:14 -05:00
Allen Byrne
93d9ebc507 [svn-r18897] Added fortran /dbglibs option to fortran compile flags for windows intel fortran case.
Duplicated windows intel fortran flag block for hl/fortran

Tested: windows
2010-05-25 16:19:31 -05:00
Allen Byrne
0ee8e4c7ad [svn-r18889] Update CMake fortran configure/build with changes from community.
- Add an install rule to copy compiled fortran module files
- Only build the xlatefile utility if testing and tools are enabled
- Don't do MPI HAVE_XXX checks until MPI_FOUND is true
- Install needs H5version.h & H5overflow.h to be copied
- Add debug information flags to debug compile and link lines for win32 Intel compiler
2010-05-25 11:00:24 -05:00
Elena Pourmal
7f86dac06b [svn-r18883] Maintenance: Brought fixes for bug 1851 (DS failures on PPC) to 1.8 branch
Platforms tested: juniper-w (Mac PPC), linew (64-bit), jam, amani
2010-05-22 14:11:27 -05:00
Allen Byrne
02a2333199 [svn-r18860] pull r18858 from 185;
Cange allocation of buffer to use the specified dimensions to calculate the size of a data buffer. Also removed any initialized values.
2010-05-19 17:13:23 -05:00
Allen Byrne
0fe834c473 [svn-r18855] Added CPack commands for installtion program
Tested: local linux and Windows
2010-05-19 15:03:17 -05:00
Mike McGreevy
973c61fd42 [svn-r18841] Changed version number to 1.8.4-snap0
Updated RELEASE.txt file accordingly.
2010-05-18 10:26:01 -05:00
Larry Knox
a41fb65b7c [svn-r18836] Added code to config files, libhdf5.settings.in and configure.in to add compiler version information for fortran and C++ in the settings file and the configure output for our common compilers on linux, solaris, and mac(gnu only).
Tested:  amani, jam, linew (h5committest) and with configure on these machines and tejeda.
2010-05-17 17:23:23 -05:00