Commit Graph

9651 Commits

Author SHA1 Message Date
Quincey Koziol
55b31c57b5 [svn-r12846] Description:
Further minor tweaking of property list class initialization macros, etc.

Tested on:
    FreeBSD/32 4.11 (sleipnir) w/threadsafe & debugging turned on
    Linux/32 2.4 (heping) w/FORTRAN & C++
    Linux/64 2.4 (mir) w/build-all & 1.6 compat enabled
    AIX/32 5.x (copper) w/FORTRAN & parallel
2006-11-02 13:38:22 -05:00
Quincey Koziol
d90d6ffdce [svn-r12845] Description:
Finish refactoring job on the library's property list class initialization
code, so that the library determines the parent class dependencies at run-time,
eliminating the need for developers to initialize the classes in a particular
order.  Also eliminates some more redundant code...

Tested on:
    FreeBSD/32 4.11 (sleipnir) w/threadsafe & debugging turned on
    Linux/32 2.4 (heping) w/FORTRAN & C++
    Linux/64 2.4 (mir) w/build-all & 1.6 compat enabled
    AIX/32 5.x (copper) w/FORTRAN & parallel
2006-11-02 13:10:31 -05:00
Quincey Koziol
05c0302e35 [svn-r12844] Description:
Fix parallel build failure for property list class initialization refactor.

Tested on:
    AIX (copper) w/parallel
2006-11-02 11:01:54 -05:00
MuQun Yang
f0b2748073 [svn-r12843] Update windows library projects to reflect Quincey' recent changes. 2006-11-02 10:53:59 -05:00
Quincey Koziol
19c9657f7c [svn-r12842] Description:
Refactor generic property list initialization code to put property list
specific routines in property list modules, instead of scattered to the four
winds.  Also, introduce property list class initialization objects, to make
adding new property list classes in the library easier.

    Fix daily test failure by using H5Pget_elink_prefix() API routine instead
of looking at the "raw" generic property list information.

Tested on:
    Mac OS X/32 10.4.8 (amazon)
    FreeBSD/32 4.11 (sleipnir) w/threadsafe
    Linux/32 2.4 (heping) w/C++ & FORTRAN
    Linux/64 2.4 (mir) w/build-all & 1.6 compat
2006-11-01 23:54:19 -05:00
Raymond Lu
0f84d2fb15 [svn-r12841] Bug fix. The mechanism to handle interupted system call or partial I/O for reading data
may not work well for Direct I/O because of the requirement for data alignment.  Took it out.
2006-11-01 16:01:14 -05:00
Frank Baker
712e344e99 [svn-r12840]
Description:
    Correct input file that, via doxygen, creates the C++ reference 
      manual paragraph that pointed to a now-removed release_docs/ file.  
      Original file was release_docs/INSTALL_Windows_withcpp.txt; 
      current file is release_docs/INSTALL_Windows.txt.
    Closes Bugzilla entry 719.
Tested:
    Trivial change; not tested.
2006-11-01 14:47:03 -05:00
James Laird
16f8ef7ef0 [svn-r12839] Cleaned up a resource leak when Packet Tables are opened.
Tested on juniper (will test on kagiso after check-in to make sure
that nothing's broken).
2006-11-01 13:42:32 -05:00
Elena Pourmal
9e4f177eba [svn-r12838] Description:
Added a framework to display information about a particular object.
	This option (-O object_name) is not available to the users yet. 
        Currently only name of an object (or objects) is displayed. 

Platforms tested:
	sol, kagiso and copper.
2006-10-31 22:04:01 -05:00
MuQun Yang
f940948af9 [svn-r12836] Catch up with h5diff tests.
Catch up with h5repacktst tests.
2006-10-31 12:36:52 -05:00
Quincey Koziol
8b52aae45d [svn-r12835] Description:
Change H5Lget_linkinfo() to H5Lget_info() to better align with coming API
changes.

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2006-10-30 19:45:31 -05:00
Quincey Koziol
5acf9725e0 [svn-r12834] Description:
Uncomment out tests that were accidentally left out.

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2006-10-30 19:16:11 -05:00
Quincey Koziol
bcda3c2dbf [svn-r12833] Description:
Clean up more warnings...

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2006-10-30 19:13:27 -05:00
Quincey Koziol
3f69573f57 [svn-r12832] Description:
Clean up formatting and re-organize a bit...

Tested on:
    Max OS X/32 10.4.8 (amazon)
    FreeBSD/32 4.11 (sleipnir)
    Linux/32 2.4 (heping)
    Linux/64 2.4 (mir)
2006-10-30 18:46:27 -05:00
James Laird
c19a43d854 [svn-r12831] Changed the API for "unpacking" an external link value to take the size of
the linkval buffer, per Elena and Frank's suggestions while revising
the documentation.  Added error checking using this size, as well as a
couple of tests.

Tested on juniper, kagiso, and sol.
2006-10-30 15:24:19 -05:00
Quincey Koziol
780fefb829 [svn-r12830] Description:
Finish internal work necessary to track creation order in v2 B-tree when
group is in "dense" storage form.

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2006-10-30 15:03:46 -05:00
Quincey Koziol
2e333eef24 [svn-r12829] Description:
Clean up more compiler warnings, esp. on Linux/64 platform.

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2006-10-30 15:00:57 -05:00
Quincey Koziol
25f3bf9011 [svn-r12828] Description:
Clean up compiler warnings...

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2006-10-30 10:58:46 -05:00
Quincey Koziol
87411d7b2d [svn-r12827] Description:
Correct typo that was causing tests to fail.

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2006-10-30 10:57:57 -05:00
Pedro Vicente Nunes
199b2f9a1d [svn-r12826]
added a new test for h5diff relative error for the file generator
program
2006-10-30 10:18:58 -05:00
Quincey Koziol
12edb97078 [svn-r12825] Description:
Rudimentary support for creating creation order index (but not inserting
links in it yet).

Testedon:
    Mac OS X/32 10.4.8 (amazon)
2006-10-30 09:33:14 -05:00
Raymond Lu
b27b488926 [svn-r12824] O_DIRECT flag was accidentally commented out in previous checkin. Put it back in. 2006-10-30 08:48:54 -05:00
Quincey Koziol
02bba16ee0 [svn-r12823] Description:
Add support for compress heap blocks in "managed" heaps.

    Also, fix bug when the first direct block moves between having a parent
and not having one (and vice versa), which occurs when the heap moves between
having a direct root block and having an indirect root block.

Tested on:
    FreeBSD 4.11 (sleipnir) w/threadsafe
    Linux/32 2.4 (heping) w/C++ & FORTRAN
    Linux/64 2.4 (mir) w/build-all & 1.6 compat
2006-10-28 21:17:07 -05:00
Raymond Lu
c6c63ab6c6 [svn-r12822] H5Pset_alignment seems working. Added it in test/vfd.c and made the test more complete by writing
two data sets.  One is aligned, and the other isn't.
2006-10-28 16:11:04 -05:00
Quincey Koziol
143db84d88 [svn-r12821] Description:
Clean up compiler warnings, esp. on 64-bit Linux boxes.

Tested on:
    FreeBSD/32 4.11 (sleipnir) w/threadsafe
    Linux/32 2.4 (heping) w/C++ & FORTRAN
    Linux/64 2.4 (mir) w/build-all & 1.6 compat
2006-10-28 15:49:40 -05:00
Raymond Lu
0f040c40f0 [svn-r12820] Added fragmental copy buffer to H5FD_direct_write. This buffer size is set through
H5Pset_fapl_direct.  It's been added to H5FD_direct_read in the previous checkin.  Still, a test is
needed at later checkin.
2006-10-26 21:41:19 -05:00
Pedro Vicente Nunes
469f6d30b1 [svn-r12819]
h5diff: print a message of "not comparable" in a case where the relative error
compare is not possible, due to the denominator being zero.  Modified
the test file generator program to include a example for this and a new
test on the shell script
2006-10-26 12:48:36 -05:00
Binh-Minh Ribler
254262e35b [svn-r12817] Purpose: Minor fix
Description:
    Added (long) to a verify_val call.

Platforms tested:
    Linux 2.6 (kagiso) - very minor, and Kent will test it on Windows, because
        that was where it was complained about.
2006-10-26 11:21:07 -05:00
MuQun Yang
7f295dcb3c [svn-r12816] Update batch files to reflect h5diff and h5repack's changes on windows. 2006-10-25 20:29:16 -05:00
Pedro Vicente Nunes
9d94440384 [svn-r12815]
1) added a new parameter to the h5diff function diff_array that contains
the beginning position of the hyperslab, so that the total position in
the array is printed correctly when reading by hyperslabs.
2) added a new test to h5diff  that reads and diffs by hyperslabs. The
test reads a 1GB dataset, from which a 1KB hyperslab was written with
differences .
3) added the generation of 2 files to the generator program to test the
h5diff hyperslab read.
4) changed the h5diff binary pre-generated file names to be more
descriptive (e.g, instead of file1.h5, made it h5diff_basic1.h5)
5) changed the name of the h5repack options text file to info.h5repack
2006-10-25 15:38:28 -05:00
MuQun Yang
ea1047de51 [svn-r12814]
Add a new batch file copytest.BAT to test h5copy on windows.
2006-10-25 15:19:19 -05:00
MuQun Yang
2339d79eac [svn-r12813] Update C++ project files to reflect the recent changes although compiling errors have been found. 2006-10-25 15:12:46 -05:00
MuQun Yang
a88a102d5c [svn-r12812] Add h5copy tool tests for windows. 2006-10-25 15:11:29 -05:00
Albert Cheng
84bd65e8fc [svn-r12811] Purpose:
Bug fix.

Description:
AIX complained if some files are still open when MPI_Finalize is called,
so code called _exit without calling MPI_Finalize.  But in Linux hosts
with MPICH, the MPI processes terminated but the launch processes got
stuck waiting for those processes to end properly and they would hang
on forever.  As more tests ran, more processes got stuck.

Solution:
In order to please both AIX and MPICH, the MPI file handles are retrieved
and closed outside of the HDF5 library, then call MPI_Finalize and then
_exit.

Tested:
in heping and copper.
2006-10-24 19:09:25 -05:00
Albert Cheng
2104bb380d [svn-r12809] Purpose:
Bug fix.

Description:
H5FD_get_vfd_handle() would return okay even if an VFD did not have the
get_vfd_handle callback function defined.

Solution:
Return failure if get_vfd_handle function is not defined.

Tested:
in heping and copper.
2006-10-24 19:02:56 -05:00
Elena Pourmal
5975624f97 [svn-r12808] Fixed a few typos in the recent changes to support g95 that were exposed on Windows.
Platforms tested: Those were changes to the Windows related code only; will be tested
                  by windows daily tests.
2006-10-24 13:52:05 -05:00
MuQun Yang
fbe677a029 [svn-r12807] Need to add another dependency for windows. 2006-10-24 12:16:16 -05:00
Quincey Koziol
5032b2e7df [svn-r12806] Description:
Reduce memory usage for common cases of I/O pipeline filter memory usage.

    Also, clean up some more code...

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2006-10-23 19:16:49 -05:00
Quincey Koziol
45ac464161 [svn-r12805] Description:
Fix off-by-one memory error when retrieving I/O pipeline filter's name.

Tested on:
    Linux/64 2.4 (mir)
    FreeBSD/32 4.11 (sleipnir)
2006-10-23 17:21:23 -05:00
MuQun Yang
ec74fa4bea [svn-r12804] Missing an argument(fapl) for a routine that tests the existence of szip encoder.
Windows picked this up. Tested with VS 6.0 with szip enabled.
2006-10-23 16:51:06 -05:00
Quincey Koziol
e40557304f [svn-r12803] Description:
Finish new version of the I/O pipeline message, which is much smaller than
the previous version.  This version is used with the "use the latest version
of the format" flag.

    Closed several memory leaks/overruns (found with valgrind).

    Also, lots of compiler & formatting cleanups.

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2006-10-23 15:40:14 -05:00
Quincey Koziol
1062b4f9d7 [svn-r12802] Description:
Clean up code in passing...

Tested on:
    Linux/32 2.4 (heping)
    Linux/64 2.4 (mir)
    FreeBSD/32 4.11(sleipnir)
    Mac OS/32 10.4.8 (amazon)
2006-10-23 10:03:15 -05:00
Quincey Koziol
1202e83013 [svn-r12801] Description:
Fix several errors in the "latest version" of the object header format
changes and enable the new version when requested now.

    Clean up several confusing or duplicated sections of code.

Tested on:
    Linux/32 2.4 (heping)
    Linux/64 2.4 (mir)
    FreeBSD/32 4.11 (sleipnir)
2006-10-23 05:15:52 -05:00
Binh-Minh Ribler
8ee7c55fea [svn-r12799] Purpose: Fixed typo
Description:
    Removed a leftover prototype.

Platform tested:
    Linux 2.6 (kagiso) - very minor
2006-10-22 03:54:04 -05:00
Binh-Minh Ribler
22023b1e9f [svn-r12797] Purpose: Adding test
Description:
    Added trefer.cpp to c++/test.

Platform tested:
    ran bin/chkmanifest
2006-10-22 03:29:46 -05:00
Binh-Minh Ribler
fdd56729be [svn-r12796] Purpose: Adding test
Description:
    Wrappers of H5Rcreate had incorrect prototypes.  Fixed and added
    object reference tests.

Platform tested:
    Linux 2.4 (heping)
    AIX 5.1 (copper)
    SunOS 5.8 64-bit (sol)
2006-10-22 03:24:24 -05:00
Binh-Minh Ribler
daa61b5986 [svn-r12795] Purpose: Fixing bug
Description:
    Wrappers of H5Rcreate had incorrect prototypes.

Solution:
    Added these overloaded functions for H5Rcreate wrapper to IdComponent:
        void reference(void* ref, const char* name, DataSpace& dataspace,
                        H5R_type_t ref_type = H5R_DATASET_REGION) const;
        void reference(void* ref, const char* name) const;
        void reference(void* ref, const H5std_string& name) const;

    Added these overloaded functions for H5Rdereference:
        void dereference(IdComponent& obj, void* ref);
        DataSet(IdComponent& obj, void* ref);
        Group(IdComponent& obj, void* ref);
        DataType(IdComponent& obj, void* ref);

    The incorrect wrappers will be removed after announcing.

Platform tested:
    Linux 2.4 (heping)
    AIX 5.1 (copper)
    SunOS 5.8 64-bit (sol)
2006-10-22 03:22:30 -05:00
Pedro Vicente Nunes
118b1d38fa [svn-r12794]
1. bug fix. the h5_cleanup file names were not build properly on the h5repacktest call
2. added only a call to test_bigout.h5 to be clean, because the other files are generated anyway  by the shell script. test_bigout.h5  is only made on the C program part (h5repacktst)
2006-10-20 14:33:16 -05:00
Pedro Vicente Nunes
df803f78d0 [svn-r12793] 1. fix a compiling error in atlantia
2. added the test library delete framework to delete output .h5 files
3. cleaned warnings
2006-10-20 13:45:17 -05:00
James Laird
14c697f7e4 [svn-r12792] Fixed a Makefile.am to clean up a test file generated by the Packet Table
compression test.

Tested that the file is removed on juniper and heping.

Running reconfigure also regenerated the H5E* files (I think this means
somebody updated these files but didn't run reconfigure).
2006-10-20 13:10:53 -05:00