Commit Graph

3340 Commits

Author SHA1 Message Date
Quincey Koziol
2355d25955 [svn-r12894] Description:
Add H5Lget_name_by_idx routine & tests

    Move more H5G routines to deprecated API file

Tested on:
    FreeBSD/32 4.11 (sleipnir) w/threadsafe
    Linux/32 2.4 (heping) C++ & FORTRAN
    Linux/64 2.4 (mir) w/build-all & enable_compat1.6
    AIX/32 5.? (copper) w/parallel & FORTRAN
2006-11-12 06:56:10 -05:00
Quincey Koziol
b1c6bb5b98 [svn-r12893] Description:
Fix error with retrieving names of object references on big-endian
platforms.

Tested on:
    AIX/32 5.? (copper)
2006-11-11 01:22:41 -05:00
Quincey Koziol
e53f3daf61 [svn-r12892] Description:
Add H5Rget_name routine and tests...

Tested on:
    FreeBSD/32 4.11 (sleipnir)
    Linux/32 2.4 (heping)
    Linux/64 2.4 (mir)
2006-11-11 00:23:53 -05:00
Quincey Koziol
f5eebb7d17 [svn-r12891] Description:
Correct typo in a few function name macros.

Tested on:
    FreeBSD/32 4.11 (sleipnir)
2006-11-11 00:15:35 -05:00
Quincey Koziol
a9af13d987 [svn-r12890] Description:
Finished implementation of H5Lget_info_by_idx for all cases: old vs. new
group formats, compact vs. dense new link storage, increasing vs. decreasing
vs. native iteration order.

    Also, refactor symbol table "foo by index" routines to be more generic
and share more code by using a single B-tree iteration callback which makes
callbacks to a specific "get <foo>" callback.

Tested on:
    Mac OS X/32 10.4.8 (amazon)
    FreeBSD/32 4.11 (sleipnir)
    Linux/32 2.4 (heping)
    Linux/64 2.4 (mir)
    AIX/32 5.? (copper)
2006-11-10 23:15:27 -05:00
Pedro Vicente Nunes
b782690027 [svn-r12888]
Introduced the second sweep of the file for a case a reference is present and H5Ocopy was not used.
Moved the code from file h5repack_refs.c to h5repack_copy.c and removed the first file
2006-11-10 15:23:31 -05:00
James Laird
911e79b273 [svn-r12887] A fix for linking issues.
Should disable linking against shared libraries in Fortran for compilers that
don't support shared libraries.

Should also fix problem when the wrong Fortran file extension was specified.

If these changes don't solve the Daily Test issues, I'll look at backing out
the autotool version change until I have time to fix them.

Tested on heping, kagiso, juniper.
2006-11-10 14:56:04 -05:00
Raymond Lu
e6ef14ff32 [svn-r12885] Refactored the H5FD_direct_open and H5FD_direct_write. The condition for H5_HAVE_DIRECT_ALIGN
not defined simply repeated the code above.  Merged this part into the code above.  No other
significant change.
2006-11-09 08:44:44 -05:00
James Laird
a9350e86f0 [svn-r12882] Changed bin/reconfigure to work on kagiso as well as on AFS Linux machines.
Updated to the latest versions of autotools.

Tested on kagiso, heping, and juniper.  Let me know if you have any problems.
2006-11-08 13:39:15 -05:00
Leon Arber
77763447fd [svn-r12879] Purpose: Bug fix
Description: Fix a few memory-related bugs in the data transform code.

Tested:
    kagiso (for real this time) w/ valgrind 3.2.1
2006-11-07 20:52:54 -05:00
Quincey Koziol
665f42f9e0 [svn-r12878] Description:
Flesh out support for looking up link info by index, some cases for using
dense storage are working now.

Tested on:
    Linux/32 2.6 (chicago)
2006-11-07 15:32:44 -05:00
Quincey Koziol
e87cb91483 [svn-r12877] Description:
Clean up more compiler warnings.

Tested on:
    Linux/64 2.6 (chicago2)
2006-11-07 15:19:41 -05:00
Quincey Koziol
53357538de [svn-r12876] Description:
Make code that retrieves names for references thrash memory less by keeping
track of the current buffer size and only re-allocating it when necessary.

Tested on:
    Linux/64 2.6 (chicago2)
2006-11-07 14:03:07 -05:00
Quincey Koziol
de285fb909 [svn-r12875] Description:
Fix retrieving name for references to root group.

    Also, move 'ref' test earlier in testing, right after 'getname' test

Tested on:
    Linux/64 2.6 (chicago2)
2006-11-07 12:06:42 -05:00
Quincey Koziol
bc0b7c478f [svn-r12873] Decription:
Add support for reverse index lookup to v2 B-trees (needed for reverse
index lookup of links in groups)

Tested on:
    Linux/64 2.6 (chicago2)
2006-11-07 10:25:06 -05:00
Quincey Koziol
eb36a96a79 [svn-r12872] Description:
Implement basic framework for H5Lget_info_by_idx and get it working for
creation order indices on compact groups.

    Clean up code a bit.
    
    Close resource link in user-defined link traversal.

Tested on:
    Linux/32 2.6 (chicago)
2006-11-06 22:09:03 -05:00
Quincey Koziol
db3632444b [svn-r12871] Description:
Clean up a couple of warnings...

Tested on:
    Linux/64 2.6 (chicago2)
2006-11-06 21:48:39 -05:00
Raymond Lu
8e0a4a03c0 [svn-r12870] Add a new macro H5_HAVE_DIRECT_ALIGN in configure.in. Some systems like copper and sleipnir
doesn't require alignment for Direct I/O.  If this's true, write or read data just like sec2
does.
2006-11-06 17:17:46 -05:00
Quincey Koziol
2e8e42d6c9 [svn-r12869] Description:
Rename new H5Gcopy() routine to H5Ocopy() as discussed in last Friday's
design discussion.

Tested on:
    Linux/32 2.6 (chicago)
2006-11-06 16:35:44 -05:00
Quincey Koziol
0a2cdffb0b [svn-r12868] Description:
Make API routines that don't initialize the library more consistent, to
help with future internal library changes.

Tested on:
    Linux/64 2.6 (chicago2)
2006-11-06 14:22:33 -05:00
Quincey Koziol
3a5cb21f25 [svn-r12867] Description:
Get rid of H5L API calls from within deprecated H5G API calls.

Tested on:
    Linux/32 2.6 (chicago)
2006-11-06 14:06:02 -05:00
Quincey Koziol
2b635fee4d [svn-r12866] Description:
Clean up initialization of H5F & H5L APIs.

Tested on:
    Linux/64 2.6 (chicago2)
2006-11-06 12:47:02 -05:00
Quincey Koziol
32cd8f3fcf [svn-r12865] Description:
Change name of H5Lunlink to H5Ldelete, per our design meeting last Friday.

Tested on:
    Linux/32 2.6 (chicago)
2006-11-06 12:44:40 -05:00
Quincey Koziol
5adf1ee1ba [svn-r12864] Description:
Changed H5Lget_linkval() to H5Lget_val(), per our design discussion last
Friday afternoon.

Tested on:
    Linux/32 2.6 (chicago)
2006-11-06 12:05:16 -05:00
Quincey Koziol
5a77933fd5 [svn-r12859] Description:
Fix to handle finding the correct path to an object in a mounted file
hierarchy.

Tested on:
    FreeBSD/32 4.11 (sleipnir)
2006-11-03 23:34:28 -05:00
Quincey Koziol
6b02bda9eb [svn-r12858] Description:
Clean up code to build name for ID with no name tracked - get rid of
global variable, unused routines, etc.

Tested on:
    FreeBSD/32 4.11 (sleipnir)
2006-11-03 20:56:16 -05:00
Quincey Koziol
fdd8440178 [svn-r12855] Description:
Further code cleanups to bring into better alignement w/rest of library.

Tested on:
    FreeBSD/32 4.11 (sleipnir)
2006-11-03 10:30:51 -05:00
Quincey Koziol
2ef26248c5 [svn-r12854] Description:
Clean up some more function name problems and other compiler warnings.

Tested on:
    FreeBSD/32 4.11 (sleipnir)
2006-11-03 10:15:17 -05:00
Quincey Koziol
8c5e848bd4 [svn-r12853] Description:
Correct name of routine in FUNC_ENTER... macro.

Tested on:
    None - just eyeballed, very trivial..
2006-11-03 09:45:46 -05:00
MuQun Yang
19f0abf0fa [svn-r12852] Add the declaration of H5I_get_file_id to avoid a bad windows warning. 2006-11-02 22:50:32 -05:00
Leon Arber
d496206f8b [svn-r12849] Purpose: Feature
Description:  Add ability for H5Iget_name to figure out the path name given an object reference.

Tested:
kagiso, sol
2006-11-02 17:58:38 -05:00
Quincey Koziol
1ed3d8d77e [svn-r12848] Description:
Change H5Pset_elink_prefix to be more similar to rest of library and make
a copy of the string passed in.

    Change H5Pget_elink_prefix to be link rest of library routines that query
a string.

Tested on:
    FreeBSD/32 4.11 (sleipnir) w/threadsafe & debugging turned on
    Linux/32 2.4 (heping) w/FORTRAN & C++
    Linux/64 2.4 (mir) w/build-all & 1.6 compat enabled
    AIX/32 5.x (copper) w/FORTRAN & parallel
2006-11-02 16:37:24 -05:00
James Laird
a993ec82fd [svn-r12847] Corrected the comment describing H5Odecr_refcount's return value.
Change only in comment block; no testing necessary.
2006-11-02 15:04:10 -05:00
Quincey Koziol
55b31c57b5 [svn-r12846] Description:
Further minor tweaking of property list class initialization macros, etc.

Tested on:
    FreeBSD/32 4.11 (sleipnir) w/threadsafe & debugging turned on
    Linux/32 2.4 (heping) w/FORTRAN & C++
    Linux/64 2.4 (mir) w/build-all & 1.6 compat enabled
    AIX/32 5.x (copper) w/FORTRAN & parallel
2006-11-02 13:38:22 -05:00
Quincey Koziol
d90d6ffdce [svn-r12845] Description:
Finish refactoring job on the library's property list class initialization
code, so that the library determines the parent class dependencies at run-time,
eliminating the need for developers to initialize the classes in a particular
order.  Also eliminates some more redundant code...

Tested on:
    FreeBSD/32 4.11 (sleipnir) w/threadsafe & debugging turned on
    Linux/32 2.4 (heping) w/FORTRAN & C++
    Linux/64 2.4 (mir) w/build-all & 1.6 compat enabled
    AIX/32 5.x (copper) w/FORTRAN & parallel
2006-11-02 13:10:31 -05:00
Quincey Koziol
05c0302e35 [svn-r12844] Description:
Fix parallel build failure for property list class initialization refactor.

Tested on:
    AIX (copper) w/parallel
2006-11-02 11:01:54 -05:00
Quincey Koziol
19c9657f7c [svn-r12842] Description:
Refactor generic property list initialization code to put property list
specific routines in property list modules, instead of scattered to the four
winds.  Also, introduce property list class initialization objects, to make
adding new property list classes in the library easier.

    Fix daily test failure by using H5Pget_elink_prefix() API routine instead
of looking at the "raw" generic property list information.

Tested on:
    Mac OS X/32 10.4.8 (amazon)
    FreeBSD/32 4.11 (sleipnir) w/threadsafe
    Linux/32 2.4 (heping) w/C++ & FORTRAN
    Linux/64 2.4 (mir) w/build-all & 1.6 compat
2006-11-01 23:54:19 -05:00
Raymond Lu
0f84d2fb15 [svn-r12841] Bug fix. The mechanism to handle interupted system call or partial I/O for reading data
may not work well for Direct I/O because of the requirement for data alignment.  Took it out.
2006-11-01 16:01:14 -05:00
Quincey Koziol
8b52aae45d [svn-r12835] Description:
Change H5Lget_linkinfo() to H5Lget_info() to better align with coming API
changes.

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2006-10-30 19:45:31 -05:00
Quincey Koziol
bcda3c2dbf [svn-r12833] Description:
Clean up more warnings...

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2006-10-30 19:13:27 -05:00
Quincey Koziol
3f69573f57 [svn-r12832] Description:
Clean up formatting and re-organize a bit...

Tested on:
    Max OS X/32 10.4.8 (amazon)
    FreeBSD/32 4.11 (sleipnir)
    Linux/32 2.4 (heping)
    Linux/64 2.4 (mir)
2006-10-30 18:46:27 -05:00
James Laird
c19a43d854 [svn-r12831] Changed the API for "unpacking" an external link value to take the size of
the linkval buffer, per Elena and Frank's suggestions while revising
the documentation.  Added error checking using this size, as well as a
couple of tests.

Tested on juniper, kagiso, and sol.
2006-10-30 15:24:19 -05:00
Quincey Koziol
780fefb829 [svn-r12830] Description:
Finish internal work necessary to track creation order in v2 B-tree when
group is in "dense" storage form.

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2006-10-30 15:03:46 -05:00
Quincey Koziol
25f3bf9011 [svn-r12828] Description:
Clean up compiler warnings...

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2006-10-30 10:58:46 -05:00
Quincey Koziol
87411d7b2d [svn-r12827] Description:
Correct typo that was causing tests to fail.

Tested on:
    Linux/32 2.6 (chicago)
    Linux/64 2.6 (chicago2)
2006-10-30 10:57:57 -05:00
Quincey Koziol
12edb97078 [svn-r12825] Description:
Rudimentary support for creating creation order index (but not inserting
links in it yet).

Testedon:
    Mac OS X/32 10.4.8 (amazon)
2006-10-30 09:33:14 -05:00
Raymond Lu
b27b488926 [svn-r12824] O_DIRECT flag was accidentally commented out in previous checkin. Put it back in. 2006-10-30 08:48:54 -05:00
Quincey Koziol
02bba16ee0 [svn-r12823] Description:
Add support for compress heap blocks in "managed" heaps.

    Also, fix bug when the first direct block moves between having a parent
and not having one (and vice versa), which occurs when the heap moves between
having a direct root block and having an indirect root block.

Tested on:
    FreeBSD 4.11 (sleipnir) w/threadsafe
    Linux/32 2.4 (heping) w/C++ & FORTRAN
    Linux/64 2.4 (mir) w/build-all & 1.6 compat
2006-10-28 21:17:07 -05:00
Raymond Lu
c6c63ab6c6 [svn-r12822] H5Pset_alignment seems working. Added it in test/vfd.c and made the test more complete by writing
two data sets.  One is aligned, and the other isn't.
2006-10-28 16:11:04 -05:00
Quincey Koziol
143db84d88 [svn-r12821] Description:
Clean up compiler warnings, esp. on 64-bit Linux boxes.

Tested on:
    FreeBSD/32 4.11 (sleipnir) w/threadsafe
    Linux/32 2.4 (heping) w/C++ & FORTRAN
    Linux/64 2.4 (mir) w/build-all & 1.6 compat
2006-10-28 15:49:40 -05:00