Commit Graph

291 Commits

Author SHA1 Message Date
Dana Robinson
eebaee6529 VFD SWMR: sync with develop (#830)
* Normalization with develop

* Removes checks and work-arounds for strtoll and strtoull (#769)

* Removes checks for (v)snprintf, which are C99 (#772)

* Update missing release note info. (#776)

* Replaces the H5_OVERRIDE macro with override (#773)

The macro is no longer necessary now that we require C++11.

* Cleans up some POSIX header bits in H5private.h (#783)

* Removes outdated checks for ways inline might be defined (#781)

These are obsolete now that we require C99.

* Removes checks for system(), which is C89/90 (#782)

* Removes C++ dependency on H5private.h (#774)

* Removes C++ dependency on H5private.h

Most C API calls have been removed, aside from a few uses of free,
where we just dropped the 'HD'. A couple of H5_ATTR_UNUSED macros
were also replaced with (void) statements.

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Further simplifies Autotools type size checks (#789)

Also fixes an issue where clock_gettime and difftime are not detected
due to earlier simplifications of this code.

* Release Note (#784)

* Normalization of CMake H5pubconf.h with Autotools (#791)

Mostly just moving things around and changing the comments to keep the
delta small. The only symbol change is that for curl/curl.h which I
changed to H5_HAVE_CURL_CURL_H to match the Autotools. This symbol
is not used in the library and is just an artifact of the checks.

* Fix tools test (#794)

* Removes ancient Autotools cruft (#790)

* Reorganization of C and POSIX headers in H5public.h & H5private.h (#793)

* Reorganization of C and POSIX headers in H5public.h & H5private.h

Consolidated and removed duplicates

* It turns out Windows has sys/types.h

Co-authored-by: Larry Knox <lrknox@hdfgroup.org>

* Removes checks for signal and set/longjmp, which are C89 (#798)

Also removes checks for setjmp.h and stddef.h

* Assume frexpl/f and fabsl/f, which are C99 (#799)

* Assume the library has C99 types in C++ type code (#806)

* Assume the library has C99 types in C++ type code

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Removes obsolete equivalents of C99's __func__ (#800)

* Cleans up POSIX/C bits in H5private.h (#804)

* Cleans up POSIX/C bits in H5private.h

* Assume difftime exists (C89)
* Reorg AC_CHECK_HEADERS so headers are in alphabetical order
* Split off networking-related AC_CHECK_HEADERS
* Remove unused UNAME_CYGWIN from configure.ac
* Remove checks for unused sys/timeb.h
* Tidying pass over H5private.h HD prefix macros
* Tidy H5win32defs.h
* Add HD prefix to various scanf calls

* Committing clang-format changes

* Fixes to the alarm(2) code used in the tests to make Windows happy

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Brings the tools getopt(3) replacement into the main library (#803)

* Moves get_option from the tools library to the C library

* Adds H5 prefix to get_option call and variables

* Renames the H5_get_option long options struct and enum

* Removes type guesses when C99 types are missing (#807)

* Assume C99 types exist in H5detect.c (#808)

* Fixes parallel issues from recent C99 changes

* Adds MPE FUNC --> __func__ changes missed in earlier PRs

* Fix typo

* Fixes parallel issues from recent C99 changes (#809)

* Fixes parallel issues from recent C99 changes

* Adds MPE FUNC --> __func__ changes missed in earlier PRs

* Even more missed FUNC --> __func__ macros

* Removes remaining H5_TIME_WITH_SYS_TIME cruft (#810)

Mostly from CMake

* Merges with develop

* Committing clang-format changes

* Normalization with develop

* direct_chunk test and H5Dget_chunk_storage_size changes
* Removes unused H5O call

* Brings some dataspace changes from the combo branch merge

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
2021-07-12 13:30:20 -07:00
Dana Robinson
2ddf5fbd92 Much normalization with develop (#701)
* Brings CMake updates from develop

* Brings reduction in pedantic casts from develop

* Purges UFAIL from the library (#637)

* Committing clang-format changes

* Purges UFAIL from the library

* H5HL_insert change requested in PR

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Removes gratuitous (double)x.yF casts (#632)

* Committing clang-format changes

* Removes gratuitous (double)x.yF casts

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Committing clang-format changes

* Cleans up a const warning left over from previous constification (#633)

* Committing clang-format changes

* Adds consts to a few global variables

* Cleans up a const warning left over from previous constification

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Formatted source

* Bring over some VOL registration changes

* VOL cleanup

* H5VL_request_status_t substitutions

* H5F.c cleanup

* Minor API tweaks from develop

* Moves H5G package init/teardown to H5Gint.c

* H5G cleanup

* H5M cleanup

* H5SM cleanup

* H5T cleanup

* H5R cleanup

* H5Lpublic.h cleanup

* H5L cleanup

* H5O cleanup

* H5A, H5CS, and H5AC cleanup

* Moved H5A init/teardown code to H5Aint.c

* Moves H5D I/O functions to H5D.c

* H5D cleanup

* Misc minor cleanup

* H5P close cleanup

* H5Tpublic.h cleanup

* Fixes err_compat test

* H5PLpublic.h cleanup

* Updates H5Ppublic.h

* H5Fpublic.h updates

* H5A.c cleanup

* Brings over H5Aexists and related changes

* Brings CMake shell testing changes from develop

* Close callback changes

* H5R and H5Tcommit normalization

* err_compat test works now

* H5O tweaks

* Updates VOL registration code

* Brings over H5VL_create_object

* H5Tconv.c reformatting

* H5T.c tweaks

* Brings datatype and reference updates from develop

* Brings VOL plugin loading changes from develop

* Brings event sets from develop

* Brings async functions over

* Tools changes

* Brings over many tools changes from develop

* Brings VOL flags from develop

* Fixes h5dump double/float tests

* Updates h5repack tests

* Brings h5diff test changes from develop

* Last h5dump changes

* Brings test changes from develop

* Committing clang-format changes

* Tidied h5_testing()

* Brings chunk iteration code + misc from develop

* Updates vds test

* Enables external link parallel test

* Brings updated property lists from develop

* H5G changes from develop

* H5MF cleanup

* Brings vfd_swmr test back into CMake

* Updates threadsafe test

* Updates plist test

* Brings recent changes from develop

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
2021-05-28 07:10:51 -07:00
Dana Robinson
7a5b440fa8 Brings H5Z and many test changes from develop 2021-05-06 19:48:58 -07:00
Dana Robinson
67cfa2396c Updates license url and history docs 2021-03-24 18:29:11 -07:00
Dana Robinson
feb20aac30 Formats the source and updates the gcc warning pragmas 2021-03-24 17:39:37 -07:00
Dana Robinson
08dca47475 Minor normalizations with hdf5_1_10 2020-07-31 11:40:29 -07:00
kmu
9be5b2842e merge and fix 2020-01-20 21:11:32 -06:00
kmu
628d267162 merge and fix conflict 2020-01-19 08:09:44 -06:00
Dana Robinson
a92c735c9b Squashed commit of the token_refactoring branch: 2020-01-16 13:29:34 -08:00
kmu
d46ea2d08a merge and fix conflicts 2020-01-14 11:28:27 -06:00
kmu
9712fad601 fix unused related warnings 2020-01-13 13:20:19 -06:00
kmu
8b51394f38 Merge branch 'develop' into bugfix/intel_warnings 2019-12-09 09:18:56 -06:00
kmu
189935ff26 remove unnecessary check macro 2019-12-06 14:12:57 -06:00
Dana Robinson
1ad02a4459 Yanked -Wc++-compat from the flags used to build the C library in both
the Autotools and CMake.
2019-12-04 00:49:52 -08:00
kmu
132fa33dad fix intel compile warnings 2019-12-03 20:52:55 -06:00
kmu
e0262c8bed Revert "fix warnings from Intel compiler"
This reverts commit 8b9338ab57.
2019-11-26 17:24:48 -06:00
kmu
2bb0f52edf Revert "fix issues from previous PR comments"
This reverts commit d242a900f4.
2019-11-26 17:23:58 -06:00
kmu
4c8a2f726a Revert "using a different MACRO"
This reverts commit fc61b7a9f3.
2019-11-26 17:23:34 -06:00
kmu
fc61b7a9f3 using a different MACRO 2019-11-25 15:17:55 -06:00
kmu
d242a900f4 fix issues from previous PR comments 2019-11-25 12:48:51 -06:00
kmu
8b9338ab57 fix warnings from Intel compiler 2019-11-07 14:34:13 -06:00
Jerome Soumagne
c13078a0ed Make wrappers, tests and tools use H5Treclaim() instead of H5Dvlen_reclaim() 2019-10-08 14:30:24 -05:00
Vailin Choi
9ea386b6a6 Fixed the iteration error in test_versionbounds() in test/dtypes.c. 2019-09-30 12:56:49 -05:00
Allen Byrne
e6b029e77e add missing version to list 2019-09-26 10:48:37 -05:00
Allen Byrne
64e6665b54 Add HD prefix to tests 2019-08-15 16:46:15 -05:00
Quincey Koziol
d5130bb573 Updated configure & CMake compiler flags for GCC 8.x, along with corresponding
changes to warnhist script (and some extra improvements for condensing C++
and Java warnings), and fixed a bunch of warnings.
2019-06-28 09:10:43 -05:00
Dana Robinson
85e2214d55 Changes that show the right way to iterate over enums. 2019-03-21 10:18:16 -07:00
Dana Robinson
97cdcc47e4 Used the H5_INC_ENUM macro to squash enum value increment warnings. 2019-03-21 01:15:09 -07:00
Quincey Koziol
0df6e44a6e Squashed commit of private branch changes to support stackable VOL plugins.
modified:   test/dsets.c
2018-10-24 23:52:47 -05:00
Vailin Choi
e6bc326ec0 Fix for HDFFV-10180 Performance issues with H5Oget_info. 2018-04-24 15:10:13 -05:00
Binh-Minh Ribler
7c293908a7 Improving tests
Description:
    Fixed typos that caused daily test failure on Ostrich
Platforms tested:
    Linux/64 (jelly)
    Linux/ppc64 (ostrich)
2018-03-09 00:35:42 -06:00
Binh-Minh Ribler
f05f9d4cff Miscellaneous test fixes
Description:
    - dtypes.c: added the use of highest version of nested datatypes to
      verify the datatype's version.
    - miscellaneous typos
Platforms tested:
    Linux/64 (jelly)
    Darwin (osx1010test)
2018-03-06 11:41:33 -06:00
Binh-Minh Ribler
4899c9ab47 Misc improvement
Description:
    - Added test file for h5repack test VERIFY_INVALIDBOUNDS
    - Updated MANIFEST
    - Removed unnecessary header file in test
    - Update h5repack script to copy the new file to the test location
Platforms tested:
    Linux/64 (jelly)
    Darwin (osx1010test)
2018-02-27 18:04:29 -06:00
Binh-Minh Ribler
39e3da7563 Improving tests
Description:
    - Added test for version bounds with nested datatypes
    - Added script for additional version bound test in h5repack
    - Cleaned up tests for consistency
    - Removed extra included header files
Platforms tested:
    Linux/64 (jelly)
    Linux/64 (moohan)
    Darwin (osx1010test)
2018-02-17 16:18:37 -06:00
Larry Knox
89fbe00dec Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to hdf5_1_10
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
  Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
  Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
  Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
  Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
2017-04-25 16:05:36 -05:00
Frank.Willmore
526bcc242d Changes to be committed:
modified:   bittests.c
	modified:   cmpd_dset.c
	modified:   dsets.c
	modified:   dt_arith.c
	modified:   dtypes.c
	modified:   extend.c
	modified:   fillval.c
	modified:   filter_fail.c
	modified:   flush1.c
	modified:   gen_cross.c
	modified:   hyperslab.c
	modified:   istore.c
	modified:   links.c
	modified:   links_env.c
	modified:   objcopy.c
	modified:   plugin.c
	modified:   tcheck_version.c
	modified:   unlink.c
	modified:   unregister.c

Minor fixes to replace numeric exit codes with MACRO declarations. Not all codes found were boolean, and those cases were not changed.
2016-10-25 09:53:44 -05:00
Quincey Koziol
f40381b0ea [svn-r30285] Description:
More warning cleanups, bringing the build down to 25 unique types of
warnings, with 550 warnings in 122 files (down from 28, 770, and 134).

Tested on:
    MacOSX/64 10.11.5 (amazon) w/serial & parallel
    (h5committest forthcoming)
2016-08-13 04:23:53 -05:00
Allen Byrne
bac4cf8e92 [svn-r30238] Follow-on to HDFFV-9928: remove unconditional call of time.h type headers. Also remove duplicated includes when h5private.h is used. 2016-08-01 12:38:34 -05:00
Quincey Koziol
f60170dac7 [svn-r28761] Description:
Clean up many mismatches between malloc/free and H5MM_malloc/H5MM_xfree
in the library and tests (and use of H5free_memory and H5Dvlen_reclaim).  Also
make H5Ocopy use a private version of H5Lexists, which doesn't internally
throw (and suppress) errors when an object (or the path to it) isn't found in
the destination.

Tested on:
    MacOSX/64 10.11.2 (amazon) w/serial & parallel
    (h5committest forthcoming)
2016-01-01 01:28:04 -05:00
Jerome Soumagne
2094d86461 [svn-r28138] Add first support for _Bool and make hbool_t a "real" _Bool if available
Fix tests accordingly and fix misuse of hbool_t in various places

Fix initialization of H5Pgcpl/ocpl structs in property decoding routines

Tested on:
    Linux/32 (jam)
    Linux/64 (platypus)
    Linux/PPC64 (ostrich)
    MacOSX/64 10.11
2015-10-20 01:28:17 -05:00
Quincey Koziol
1023374492 [svn-r27768] Description:
Complete revamp of package initialization/shutdown mechanism in the library.
Each package now has a single init/term routine.

    This new way should avoid packages being re-initialized during library
shutdown and is also be _much_ more proactive about giving feedback for
resource leaks internal to the library.

    Introduces a new "module" header file for packages in the library
(e.g src/H5Fmodule.h) which sets up some necessary package configuration macros
for the FUNC_ENTER/LEAVE macros.  (The VFL drivers have their own slightly
modified version of this header, src/H5FDdrvr_module.h)

    Also cleaned up a bunch of resources leaks all across the library and tests,
along with addressing many warnings, as I encountered them.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial & parallel
    Linux/64 3.10.x (kituo) w/serial & parallel
    Linux/64 2.6.x (ostrich) w/serial
2015-09-13 22:58:59 -05:00
Dana Robinson
2e6100fb23 [svn-r27572] Removed VMS-specific code from the library.
The only remaining code consists of a few floating-point tests
that rely on pre-generated and checked-in VMS files. These have
been left alone, even though they will not be possible to
recreate, since testing VMS float behavior is still important.

Tested on: h5committest
2015-08-24 15:19:39 -05:00
Jerome Soumagne
ab7d724ffd [svn-r27548] Revert r27545 2015-08-21 17:44:22 -05:00
Jerome Soumagne
7ce2d52cf6 [svn-r27545] Add first support for _Bool and make hbool_t a "real" _Bool if available
Fix tests accordingly
2015-08-21 13:52:30 -05:00
Mohamad Chaarawi
fc45d5fcb0 [svn-r27133] - Add a new attribute function characterstic for format:
* H5_ATTR_FORMAT(X,Y,Z)  __attribute__((format(X, Y, Z)))
- Rename UNUSED attribute characterstic to H5_ATTR_UNUSED.
- Rename NORETURN attribute characterstic to H5_ATTR_NORETURN

tested with h5committest.
2015-06-01 14:38:09 -05:00
Mohamad Chaarawi
88fb6b1374 [svn-r25531] remove use of C99 PRI that failed on windows in dtypes.c
fix bugs where hid_t were assumed to be 32 bit ints or herr_t.
2014-08-11 14:13:45 -05:00
Mohamad Chaarawi
2a5454616a [svn-r25527] fix printf format warnings in dtypes test. 2014-08-11 09:19:43 -05:00
Quincey Koziol
33ea1ada24 [svn-r25496] Description:
Merge 64-bit ID changes from branch to trunk.  (Plus a few minor cleanups
that aren't on the branch)

Tested on:
    Mac OSX/64 10.9.4 (amazon) w/C++ & FORTRAN
    (h5committested on branch already for a week)
2014-07-30 15:55:14 -05:00
Dana Robinson
d01ee66666 [svn-r24937] Adds an H5free_memory() function to the library for use with
functions that return library-allocated memory. The test and tool
code were modified to use this new function where it's appropriate.

Fixes HDFFV-7710, HDFFV-8519, and HDFFV-8551

Tested on:
    64-bit Windows 7 w/ VS2012
    32-bit LE linux w/ parallel and fortran (jam)
    32-bit LE linux w/ fortran and C++ (jam)
2014-03-31 18:35:09 -05:00
Allen Byrne
819b8099e2 [svn-r24392] Cleanup testfiles from scripts. Update lists of files to be cleaned. CMake update to clean testfiles.
Tested: local cmake, autools, and h5committest
2013-11-01 16:15:37 -05:00