Commit Graph

39 Commits

Author SHA1 Message Date
Quincey Koziol
9e5dbf6906 Trim trailing whitespace 2020-04-20 18:12:00 -05:00
kmu
628d267162 merge and fix conflict 2020-01-19 08:09:44 -06:00
kmu
d46ea2d08a merge and fix conflicts 2020-01-14 11:28:27 -06:00
kmu
9712fad601 fix unused related warnings 2020-01-13 13:20:19 -06:00
kmu
45a62b2d46 fix and address comments 2019-12-11 10:44:56 -06:00
kmu
189935ff26 remove unnecessary check macro 2019-12-06 14:12:57 -06:00
kmu
132fa33dad fix intel compile warnings 2019-12-03 20:52:55 -06:00
kmu
e0262c8bed Revert "fix warnings from Intel compiler"
This reverts commit 8b9338ab57.
2019-11-26 17:24:48 -06:00
kmu
2bb0f52edf Revert "fix issues from previous PR comments"
This reverts commit d242a900f4.
2019-11-26 17:23:58 -06:00
kmu
4c8a2f726a Revert "using a different MACRO"
This reverts commit fc61b7a9f3.
2019-11-26 17:23:34 -06:00
kmu
fc61b7a9f3 using a different MACRO 2019-11-25 15:17:55 -06:00
kmu
d242a900f4 fix issues from previous PR comments 2019-11-25 12:48:51 -06:00
kmu
8b9338ab57 fix warnings from Intel compiler 2019-11-07 14:34:13 -06:00
Dana Robinson
5c80d3d912 - Added H5MMprivate.h #includes where needed
- Added casts to quiet H5MM_memcpy warnings
- Removed char * casts from HDmemcpy
2019-03-16 16:02:06 -07:00
Dana Robinson
a98747c0f9 Added an H5MM_memcpy call that checks for buffer overlap. 2019-03-16 08:06:52 -07:00
Quincey Koziol
4a17aff408 Add API context interface and use it throughout the library. 2018-03-15 16:54:30 -05:00
Larry Knox
89fbe00dec Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to hdf5_1_10
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
  Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
  Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
  Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
  Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
2017-04-25 16:05:36 -05:00
Quincey Koziol
8d4c84eae2 Bring changes to metadata cache "get entry status" call and new
"child serialized / unserialized" messages and support from the cache image
branch.
2017-01-06 11:37:17 -08:00
Quincey Koziol
64a339183f Bring SWMR support in to the main development branch. (Finally!) More tests
and the tool and API wrappers will be coming in over the weekend.
2016-12-02 08:07:04 -08:00
Quincey Koziol
3b0c2b24da Bring over support for retrying metadata cache entry loads, along with all the
supporting metadata cache callback changes, etc.
2016-11-20 04:24:57 -08:00
Quincey Koziol
eba0ff43c9 Remove 'clear' callback from metadata cache client interface, using the
new 'entry cleaned' notify action innstead.
2016-11-17 17:48:21 -08:00
Quincey Koziol
be27e1ad79 Remove explicit support within the metadata cache for tracked compressed
entries, they are now completely handled in the clients.
2016-11-17 12:58:04 -08:00
Quincey Koziol
dbc1e0e980 [svn-r29980] Description:
Cleanup whitespace to align w/revise_chunks branch

Tested on:
    MacOSX/64 10.11.5 (amazon) w/serial, parallel & production
    (h5committest forthcoming)
2016-05-30 02:25:01 -05:00
Dana Robinson
f6c7631b3c [svn-r28624] Minor normalization of H5FA package with revise_chunks.
Tested on:
    Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
    serial only
    (these changes have been in revise_chunks for a long time)
2015-12-14 02:42:13 -05:00
Quincey Koziol
1023374492 [svn-r27768] Description:
Complete revamp of package initialization/shutdown mechanism in the library.
Each package now has a single init/term routine.

    This new way should avoid packages being re-initialized during library
shutdown and is also be _much_ more proactive about giving feedback for
resource leaks internal to the library.

    Introduces a new "module" header file for packages in the library
(e.g src/H5Fmodule.h) which sets up some necessary package configuration macros
for the FUNC_ENTER/LEAVE macros.  (The VFL drivers have their own slightly
modified version of this header, src/H5FDdrvr_module.h)

    Also cleaned up a bunch of resources leaks all across the library and tests,
along with addressing many warnings, as I encountered them.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial & parallel
    Linux/64 3.10.x (kituo) w/serial & parallel
    Linux/64 2.6.x (ostrich) w/serial
2015-09-13 22:58:59 -05:00
Neil Fortner
9804fed58f [svn-r27320] Fix uninitialized memory write valgrind errors in trunk. Did this by modifying
metadata cache clients to clear unused memory in the buffer after serializing.

Tested: ummon; jam, koala, ostrich (h5committest)
2015-07-01 17:08:11 -05:00
Quincey Koziol
f30ab55f41 [svn-r27237] Description:
Merge v3 metadata cache changes to trunk.  Yay! :-)

Tested on:
    MacOSX/64 10.10.3 (amazon) w/serial & parallel
    Linux/32 2.6.x (jam) w/serial & parallel
    (daily tested on branch)
2015-06-17 19:58:49 -05:00
Quincey Koziol
235b3b86c1 [svn-r27144] Description:
Normalize trunk against the metadata_cache_merge branch, in preparation
for merging the branch into the trunk.

Tested on:
    MacOSX/64 10.10.3 (amazon) w/serial & parallel
    Linux/64 2.6.x (koala) w/serial
    Linux/32 2.6.x (jam) w/serial & parallel
2015-06-03 10:35:28 -05:00
Mohamad Chaarawi
fc45d5fcb0 [svn-r27133] - Add a new attribute function characterstic for format:
* H5_ATTR_FORMAT(X,Y,Z)  __attribute__((format(X, Y, Z)))
- Rename UNUSED attribute characterstic to H5_ATTR_UNUSED.
- Rename NORETURN attribute characterstic to H5_ATTR_NORETURN

tested with h5committest.
2015-06-01 14:38:09 -05:00
Quincey Koziol
71bc00a0b5 [svn-r27076] Description:
Clean up H5FA interface, to align w/v3 metadata cache changes

Tested on:
    MacOSX/64 10.10.3 (amazon) w/serial & parallel
    Linux/32 2.6.* (jam) w/serial & parallel
2015-05-14 21:00:27 -05:00
Mohamad Chaarawi
863ff882b6 [svn-r24709] rename H5V to H5VM since H5V is needed in the fastforward project for
view objects.  The addition of view objects in the fastforward project
is expected to be brough into the trunk sometimes in the future, which
is why we need to make this change.

Tested Manually on Jam and Ostrich.
Tested with h5commitest - Koala with intel compilers failed, but nothing had to do with those changes.
error on Koala: error while loading shared libraries: libirng.so
2014-02-13 17:12:46 -05:00
Quincey Koziol
b8d1216dca [svn-r19324] Description:
Bring recent tweaks to extensible and fixed array file formats from
revise_chunks branch back to trunk.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, w/threadsafe, in production mode
        Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                in production mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
        Mac OS X/32 10.6.4 (amazon) in debug mode
        Mac OS X/32 10.6.4 (amazon) w/C++ & FORTRAN, w/threadsafe,
                in production mode
        Mac OS X/32 10.6.4 (amazon) w/parallel, in debug mode
2010-08-31 14:34:39 -05:00
Quincey Koziol
74c8b68aca [svn-r18702] Description:
Bring r18672 from metadata journaling "merging" branch to trunk:

	Mostly changes to move to only using one 'user data' parameter for
calls to H5AC_protect(), along with some minor reformatting code cleanups.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                in production mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.6.3 (amazon) in debug mode
        Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe,
                in production mode
2010-05-05 08:39:56 -05:00
Quincey Koziol
edf124f40b [svn-r18616] Description:
Clean up compiler warnings.

Tested on:
    Mac OS X/32 10.6.3 (amazon) w/debug
    (too minor to require h5committest)
2010-04-22 14:56:03 -05:00
Quincey Koziol
0611a91263 [svn-r18504] Description:
Streamline & cleanup data structure 'destroy' calls from metadata
client destroy callbacks.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.6.3 (amazon) in debug mode
2010-04-02 00:06:18 -05:00
Quincey Koziol
fd70b2afa8 [svn-r18197] Description:
Trim trailing whitespace from source code files with this command:

find . \( -name "*.[ch]" -or -name "*.cpp" -or -name "*.f90" \) -print |xargs -n 1 sed -i "" 's/[[:blank:]]*$//'

Tested on:
    None - eyeballed only
2010-01-29 23:29:13 -05:00
Quincey Koziol
4fe33eda1c [svn-r17895] Description:
Correct & simplify client callback context for extensible and fixed
array data structures.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
                w/C++ & FORTRAN, w/threadsafe, in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x,
                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.6.2 (amazon) in debug mode
        Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe,
                in production mode
2009-11-15 23:17:45 -05:00
Quincey Koziol
74c6507d9f [svn-r17518] Description:
Bring most of Vailin's changes to the fixed array data structure back
to the trunk, including new regression test for data structure.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.5.8 (amazon) in debug mode
        Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe,
                                in production mode
2009-09-24 15:30:47 -05:00
Quincey Koziol
1521b1dd1b [svn-r17155] Description:
Bring r17154 from 'revise_chunks' branch to trunk:

	Add fixed array data structure.  (For initial use as a chunk index)

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.5.7 (amazon) in debug mode
        Mac OS X/32 10.5.7 (amazon) w/C++ & FORTRAN, w/threadsafe,
                                in production mode
2009-07-02 23:22:31 -05:00