Commit Graph

265 Commits

Author SHA1 Message Date
Quincey Koziol
9e5dbf6906 Trim trailing whitespace 2020-04-20 18:12:00 -05:00
Dana Robinson
a92c735c9b Squashed commit of the token_refactoring branch: 2020-01-16 13:29:34 -08:00
Jordan Henderson
ccf177344a Fix some places where H5P_DEFAULT gets passed down to a VOL connector 2020-01-03 12:43:51 -06:00
Neil Fortner
ce653ff82b Modify H5VL initialization routines to initialize all VOL-managed object
types.  Modify H5VLwrap_register() to reject non-VOL-managed object
types.  Also fix overisights in h5trace.c from previous changes.
2019-12-12 15:52:21 -06:00
Quincey Koziol
9fadb39656 Refactor attribute creation parameters to move parameters out of creation
property list and into function parameters.
2019-04-24 23:33:56 -05:00
Jordan Henderson
2d7eb9a4c3 Align behavior of H5Aget_name_by_idx with H5Aget_name when a NULL buffer is supplied 2019-01-08 15:52:30 -06:00
Jordan Henderson
fe30b71086 Merge pull request #1386 in HDFFV/hdf5 from ~JHENDERSON/hdf5:develop to develop
* commit 'b4fe787bb9fe4bfc4709a124df59dd987c9a09d2':
  Add test for H5Arename NULL/empty attribute name fix
  align H5Arename behavior with H5Arename_by_name
2018-12-27 23:05:20 -06:00
Dana Robinson
55fc5067b6 Updated enums in VOL va_lists to be passed as ints. 2018-12-18 09:16:46 -08:00
Jordan Henderson
b4fe787bb9 Add test for H5Arename NULL/empty attribute name fix
Split checking of NULL vs. empty string arguments
2018-12-17 14:30:54 -06:00
Jordan Henderson
16cbd591cd align H5Arename behavior with H5Arename_by_name 2018-12-17 12:01:20 -06:00
Jordan Henderson
55dbf69573 align H5Aget_info behavior with H5Gget_info when null attribute pointer is supplied 2018-12-12 17:05:56 -06:00
Quincey Koziol
3055e499d5 Switch loc_params to VOL callbacks to pass struct by pointer instead of by
value.
2018-11-21 23:12:24 -06:00
Quincey Koziol
1daa7b830a Switch driver | plugin => connector. 2018-11-04 01:27:23 -05:00
Quincey Koziol
ca5ff0c0c2 Convert dataset callbacks to standard form, for wrapping object IDs, etc.
Also, fix a few attribute issues that I missed.
2018-10-29 13:15:56 -05:00
Quincey Koziol
8fd2e1d36e Convert attribute VOL callbacks to a standard form that sets up the wrapper
object info in a single place.
2018-10-28 20:51:16 -05:00
Quincey Koziol
58202337dd Minor coding style cleanups 2018-10-28 02:02:45 -05:00
Quincey Koziol
4a32895724 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into stackable_vol 2018-10-25 18:32:13 -05:00
Quincey Koziol
0df6e44a6e Squashed commit of private branch changes to support stackable VOL plugins.
modified:   test/dsets.c
2018-10-24 23:52:47 -05:00
Dana Robinson
2d6d5cad0c Updates to the VOL ID and object API calls.
This brings the H5VL code in line with the H5I code regarding
naming, parameter order, etc.

Several public API calls were affected by this change.

These changed names to reflect their use with VOL drivers:
    H5VLregister()          -->     H5VLregister_driver()
    H5VLregister_by_name()  -->     H5VLregister_driver_by_name()
    H5VLunregister()        -->     H5VLunregister_driver()
    H5VLis_registered()     -->     H5VLis_driver_registered()

This call was renamed to match H5Iregister(). The order of the first
two parameters also reversed and the object pointer is now const.
    H5VLobject_register()   -->     H5VLregister()
2018-10-17 02:06:28 -07:00
Dana Robinson
e962df1591 VOL FEATURE 2018-10-10 08:10:15 -07:00
Dana Robinson
a56b4db4ae Remainder of vol_normalization changes (dataset, attribute, files, objects). 2018-09-24 12:23:41 -07:00
Dana Robinson
680cf4d946 Removed 'VOL' versions of FUNC_ENTER macros as well as empty functions
orginally intended to support the full SWMR feature.
2018-09-18 14:10:14 -07:00
Quincey Koziol
01f196b31a Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into merge_hyperslab_updates 2018-04-29 03:04:21 -05:00
Quincey Koziol
eecf997bf5 Remove redundant 'is_collective' parameter from H5CX_set_loc. 2018-03-26 23:19:08 -05:00
Quincey Koziol
d812c6fe60 Cleanup API context function usage. 2018-03-18 22:51:19 -05:00
Quincey Koziol
4a17aff408 Add API context interface and use it throughout the library. 2018-03-15 16:54:30 -05:00
Dana Robinson
bbb512bb55 Normalization with VOL integration branch. 2017-11-30 17:12:37 -08:00
Dana Robinson
c0021b348d Normalization with VOL integration branch. 2017-11-30 09:56:43 -08:00
Larry Knox
89fbe00dec Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to hdf5_1_10
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
  Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
  Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
  Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
  Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
2017-04-25 16:05:36 -05:00
Quincey Koziol
8859a5a270 Checkpoint normalization against incoming hyperslab / selection / dataspace
improvements.
2017-03-27 20:25:06 -07:00
Mohamad Chaarawi
63c90e5c67 [svn-r29081] - merge in the phdf5_metadata_opt/ branch with the collective metadata optimizations.
- rename H5AC_dxpl_id to H5AC_ind_read_dxpl_id and update all usage in the library

tested on bb-8 with parallel and serial.
2016-02-10 15:48:34 -05:00
Mohamad Chaarawi
48bebcc39e [svn-r29057] added dxpl type checking when debug mode is enabled (H5_DEBUG_BUILD)
tested on bb-8 with Serial and Parallel, debug and production builds.
2016-02-07 10:37:33 -05:00
Mohamad Chaarawi
91aeb766fa [svn-r28950] - remove META_FLUSH_COLLECTIVELY property for delayed sanity checks from metadata dxpls
- remove H5AC_ind_dxpl_id and use only H5AC_dxpl_id everywhere instead.
- remove flush_me_collectively flag from cache entries
- add a collective sanity check (MPI_Barrier) for every HDF5 API routine that could possibly touch the file. This is trigerred when the environment variable H5_COLL_API_SANITY_CHECK is set to a non 0 digit.

tested on BB-8 with serial and parallel.
2016-01-21 17:31:15 -05:00
Quincey Koziol
8db3728779 [svn-r28916] Description:
Normalize against incoming changes from the phdf5_metadata_opt branch.

Tested on:
    MacOSX/64 10.11.2 (amazon) w/serial & parallel
    (h5committest forthcoming)
2016-01-15 18:08:10 -05:00
Quincey Koziol
bd44db8a3c [svn-r28894] Description:
Normalize against changes on phdf5_metadata_opt branch to trunk

Tested on:
    MacoSX/64 10.11.2 (amazon) w/serial & parallel
    (h5committest forthcoming)
2016-01-13 23:29:58 -05:00
Dana Robinson
61cee5f91a [svn-r28646] Minor normalization with revise_chunks.
Also purged obsolete /*ARGSUSED*/ from the library.

Tested on:
    Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
    serial only
    (these changes have been in revise_chunks for a long time)
2015-12-14 14:19:19 -05:00
Jerome Soumagne
b991b71176 [svn-r27938] Fix private/public H5A_get_type and H5A_get_space 2015-10-02 15:17:00 -05:00
Quincey Koziol
1023374492 [svn-r27768] Description:
Complete revamp of package initialization/shutdown mechanism in the library.
Each package now has a single init/term routine.

    This new way should avoid packages being re-initialized during library
shutdown and is also be _much_ more proactive about giving feedback for
resource leaks internal to the library.

    Introduces a new "module" header file for packages in the library
(e.g src/H5Fmodule.h) which sets up some necessary package configuration macros
for the FUNC_ENTER/LEAVE macros.  (The VFL drivers have their own slightly
modified version of this header, src/H5FDdrvr_module.h)

    Also cleaned up a bunch of resources leaks all across the library and tests,
along with addressing many warnings, as I encountered them.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial & parallel
    Linux/64 3.10.x (kituo) w/serial & parallel
    Linux/64 2.6.x (ostrich) w/serial
2015-09-13 22:58:59 -05:00
Mohamad Chaarawi
fc45d5fcb0 [svn-r27133] - Add a new attribute function characterstic for format:
* H5_ATTR_FORMAT(X,Y,Z)  __attribute__((format(X, Y, Z)))
- Rename UNUSED attribute characterstic to H5_ATTR_UNUSED.
- Rename NORETURN attribute characterstic to H5_ATTR_NORETURN

tested with h5committest.
2015-06-01 14:38:09 -05:00
Mohamad Chaarawi
bf53b8c95c [svn-r27089] move private functions from H5A.c to H5Aint.c 2015-05-15 11:49:23 -05:00
Quincey Koziol
3d5e75b093 [svn-r27068] Description:
Clean up the H5A interface code, to better align with v3 metadata cache
changes.

Tested on:
    MacOSX/64 10.10.3 (amazon) w/serial & parallel
    Linux/32 2.6.x (jam) w/serial & parallel
2015-05-14 20:33:12 -05:00
Mohamad Chaarawi
3b72762036 [svn-r26777] - Fix usage of the internal AC global dxpls
- allocate sieve buffer with calloc instead of malloc

tested with h5committest
2015-04-10 12:47:16 -05:00
Quincey Koziol
89e2c8822d [svn-r25766] Description:
Revert r25273, 25283 & 25439 (the hyperslab improvement changes).  They
are buggy and it's taking me a long time to correct the problem.  I'll check
in a revised form of the changes when I've got them straightened out.

Tested on:
    Mac OSX 10.10.0 (amazon) w/gcc 4.9.x, C++, FORTRAN
    Linux 2.6.x (jam) w/parallel
2014-11-03 15:13:25 -05:00
Quincey Koziol
33ea1ada24 [svn-r25496] Description:
Merge 64-bit ID changes from branch to trunk.  (Plus a few minor cleanups
that aren't on the branch)

Tested on:
    Mac OSX/64 10.9.4 (amazon) w/C++ & FORTRAN
    (h5committested on branch already for a week)
2014-07-30 15:55:14 -05:00
Mohamad Chaarawi
bd66cdd5d6 [svn-r25468] some code refactoring to align trunk with VOL branch.
tested with h5committest.
2014-07-22 14:54:51 -05:00
Quincey Koziol
4ccb865c70 [svn-r25273] Description:
Bring in Chao/Neil/my changes to optimize hyperslab selection operations
further, along with 3 new public API routines: H5Scombine_hyperslab(),
H5Sselect_select() and H5Scombine_select(), along with many minor cleanups to
the code and fixing a few compiler warnings.

Tested on:
    Mac OSX/64 10.9.3 w/gcc 4.9.x and parallel w/OpenMPI
    (h5commttest forthcoming)
2014-06-13 01:23:57 -05:00
Quincey Koziol
7b6eae2ddf [svn-r25084] Description:
Begin process of migrating from using property list IDs internally to the
library to using the internal generic property list data structure.

Tested on:
    Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & parallel
    (h5committest forthcoming)
2014-04-23 11:30:25 -05:00
Quincey Koziol
3de25ee226 [svn-r24998] Description:
Check in Neil's changes for correctly handling case where library is
reinitialized through a deprecated routine.

Tested on:
    Linux 2.4.x/32 (jam)
2014-04-09 00:08:21 -05:00
Quincey Koziol
2060d4f6b9 [svn-r24255] Description:
Switch H5I internal data structure from using hash table to skip lists.

Tested on:
    Mac OSX 10.8.4 (amazon) w/C++ & FORTRAN
    FreeBSD, Linux, etc. forthcoming
2013-10-04 12:03:07 -05:00
Quincey Koziol
75f4e51a1a [svn-r22582] Description:
Refactor ID class registration to be more like how other "class"s in the
library are registered, and clean up compiler warnings.

Tested on:
    Mac OSX/64 10.7.4 (amazon) w/debug
    (Too minor to require h5comittest)
2012-07-16 14:54:26 -05:00