Commit Graph

2191 Commits

Author SHA1 Message Date
Albert Cheng
9a1a404e5a [svn-r17570] Bug fixes and improvement done in v1.8 and forgot to port here.
Tested: jam only as it is simple shell script changes.
2009-10-01 14:26:32 -05:00
Quincey Koziol
ee383d182f [svn-r17553] Description:
Bring general fixes/improvements from file_free_space branch back to
trunk.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.5.8 (amazon) in debug mode
        Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe,
                                in production mode
2009-09-29 15:08:01 -05:00
Albert Cheng
0f2901843c [svn-r17543] Bug fix (ID 1656):
Changed H5check_version() to suppress the warning message totally if
$HDF5_DISABLE_VERSION_CHECK is 2 or higher. (Old behavior treated 3 or higher
the same as 1, that is to print a warning and allows the program to continue.

Tested:
h5committested, extra jam serial, --disable-embedded-libinfo.
2009-09-28 23:43:22 -05:00
Albert Cheng
06a71c86a3 [svn-r17542] New test:
Add new tests (tcheck_version, testcheck_version.sh) to verify H5check_version()
does issue warnings and abort accordingly.

Tests:
H5committed tested plus jam serial tested.
2009-09-28 10:44:35 -05:00
Neil Fortner
260d1d3873 [svn-r17530] Purpose: Fix bug 1555
Description:
At several places in H5Pint.c properties were being compared using memcmp, not
using the registered "cmp" callback.  This could cause memory checkers to
report uninitialized memory errors, and could conceivably cause runtime errors
if memcmp reported false equality (for example if a value pointed to by the
property changed).

The code has been changed to always use the cmp callback.  Tests have been added that check this in all the places that previously used memcmp.

Tested: jam, linew, smirom (h5committest)
2009-09-25 13:09:06 -05:00
Quincey Koziol
d020ce731b [svn-r17524] Description:
Switch to using system call wrapper macros instead of "raw" system calls.

Tested on:
    Mac OS X/32 10.5.8 (amazon) w/debug & production
    (too minor to require h5committest)
2009-09-24 18:10:20 -05:00
Quincey Koziol
74c6507d9f [svn-r17518] Description:
Bring most of Vailin's changes to the fixed array data structure back
to the trunk, including new regression test for data structure.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.5.8 (amazon) in debug mode
        Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe,
                                in production mode
2009-09-24 15:30:47 -05:00
Raymond Lu
d67bb5f130 [svn-r17516] In the function test_rw_noupdate, I added a test with the system functions to make
sure the stat function behaves as we expected.  This test is skipped on some system because 
the modification time from stat is the same as the last access time (We know OpenVMS behaves 
in this way).

Tested on jam, smirom, and linew.  My account for OpenVMS expired.  I'll test it once I have
it back.
2009-09-24 13:26:42 -05:00
Albert Cheng
cd0f704f4d [svn-r17503] Bug fix:
Test failed with libhdf5.so not found in MacOS which uses a different
suffix (*.dylib) for shared lib.

Solution:
Added code to setup shared lib file suffix according to OS types.

Tested:
Tejeda, jam.
2009-09-22 11:09:56 -05:00
Albert Cheng
1d2bf10ae7 [svn-r17502] Purpose:
Stage 2 implementation of embedded library information feature.

H5.c: added code to print the embedded library information when there is
a library versions mis-match occurs. This ensures the library information
string is included in the executable.
Also modifies the code so that the Library mismatch warning string is
included only once in the executable.

H5private.h:
Added a global reference to the libinfo string variable to prepare
for possible stage 3 implementation of a public API.

test/testlibinfo.sh.in:
A new test added to verify the library information is indeed included
in the executables.

configure.in:
configure:
Added entry to auto-generate test/testlibinfo.sh.

H5detect.c:
Modified the libhdf5settings generating code to allow it to insert the
strings to a file other than stdout.  This maybe needed in stage 3
implementation.

MANIFEST:
updated with the newly added file of testlibinfo.sh.in.

Tested:
h5committest passed. Additional tests:
jam serial; jam --disable-embedded-libinfo; jam --disable-shared. All passed.
2009-09-21 00:28:44 -05:00
Raymond Lu
5713f108ce [svn-r17489] Skip the test in the function test_rw_noupdate() for OpenVMS because the modification time
returned from the system function stat is the same as the last access time, making it 
impossible to test whether the file is modified.

Tested on jam - simple change.
2009-09-17 14:23:08 -05:00
Quincey Koziol
f41b8ab87b [svn-r17463] Description:
Add another regression test for userblock+alignment usage, and correct
[another] issue with the combination. *sigh*

Tested on:
    FreeBSD/32 6.3 (duty) in debug mode
    FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
    Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
        in debug mode
    Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
        w/C++ & FORTRAN, in production mode
    Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
        w/szip filter, in production mode
    Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
        in production mode
    Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
    Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
    Mac OS X/32 10.5.8 (amazon) in debug mode
    Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe,
        in production mode
2009-09-11 07:19:45 -05:00
Quincey Koziol
f4d4d427b2 [svn-r17461] Description:
Fix a few more problems when the user block is not aligned properly.

Tested on:
    FreeBSD/32 6.3 (duty) in debug mode
    FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
    Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
        in debug mode
    Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
        w/C++ & FORTRAN, in production mode
    Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
        w/szip filter, in production mode
    Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
        in production mode
    Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
    Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
    Mac OS X/32 10.5.8 (amazon) in debug mode
    Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe,
        in production mode
2009-09-10 14:02:40 -05:00
Quincey Koziol
eaf4ee3eb9 [svn-r17459] Description:
Correct bad interaction between non-zero userblocks with non-zero
alignments.

    Also add some additional range checking and tests for invalid userblock
sizes.

Tested on:
    FreeBSD/32 6.3 (duty) in debug mode
    FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
    Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
        w/C++ & FORTRAN, in production mode
    Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
        w/szip filter, in production mode
    Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
        in production mode
    Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
    Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
    Mac OS X/32 10.5.8 (amazon) in debug mode
    Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe,
        in production mode
2009-09-08 15:15:37 -05:00
Quincey Koziol
fef5124981 [svn-r17411] Description:
Make H5AC_flush just flush the cache and make H5AC_dest perform the
proper parallel synchronization before destroying the cache.  Also, further
discriminate between 'closing' and 'non-closing' actions in H5F_flush.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.5.8 (amazon) in debug mode
        Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe,
                                in production mode
2009-08-23 19:50:39 -05:00
Raymond Lu
5c839af920 [svn-r17405] I added a condition check for the conversion from unsigned to float. When the configure
detects the conversion working, a macro is set.  If there's problem with this conversion like
Pathscale compiler, skip the test.

Tested on jam.  Need to verify it on pathscale machine.
2009-08-21 13:57:10 -05:00
Raymond Lu
7b6f849286 [svn-r17397] Added a comment to explain what "dst" and "ans" are when errors happen.
Tested the change for v1.8 on jam - simple change.
2009-08-20 14:40:43 -05:00
Quincey Koziol
75faf535a3 [svn-r17393] Description:
Bring back more changes from the file free space branch to the trunk.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.5.8 (amazon) in debug mode
        Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe,
                                in production mode
2009-08-20 13:45:55 -05:00
Quincey Koziol
f8c63dd9dc [svn-r17388] Description:
Correct error in freespace test which was relying on free space section
to be valid after the library had taken ownership of it (and therefore could
free it).

	Also correct some checking for return values of H5FS internal routines

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.5.8 (amazon) in debug mode
        Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe,
                                in production mode
2009-08-19 20:38:33 -05:00
Allen Byrne
709b497b97 [svn-r17382] Added UNC external links tests for windows only.
Tested: windows
2009-08-19 08:50:10 -05:00
Quincey Koziol
173083e1a5 [svn-r17365] Description:
Final merge of changes from sblock_mdc branch back to trunk.  The superblock is now managed by the metadata cache.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.5.8 (amazon) in debug mode
        Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe,
                                in production mode
2009-08-15 01:26:08 -05:00
Quincey Koziol
7bcb57d578 [svn-r17351] Description:
Clean up code (to align w/future sblock_mdc branch changes), tweak
tests for [slightly] easier debugging, fix memory leak when copying chunked
datasets with I/O filters, fix memory leak of free space section when it was
exactly the right size to use for extending an existing block in the file.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
2009-08-13 12:09:55 -05:00
Mike McGreevy
4598a59f86 [svn-r17345] Purpose:
Updating autotools

Description:

    Installed new autotools and used them to reconfigure HDF5.

    - Automake upgraded to 1.11
    - Autoconf upgraded to 2.64
    - bin/reconfigure script edited to use new versions (on jam), and
      run to generate new configure script and Makefile.in's.
    - configure.in script edited to add "_cv_" to all AC_CACHE_VAL strings
      (in order to comply with new autoconf standard).
    
Tested:

    Tested on machines jam, smirom, liberty, linew.
    Tested w/ features c++, fortran, parallel.
    Tested w/ compilers gcc, pgcc, icc.

    Further testing via Daily Tests should catch any other outliers. Upon
    passing DT's, I'll propogate the new tools into 1.8, hdf4, et cetera.
2009-08-12 13:55:25 -05:00
Quincey Koziol
18b4e80764 [svn-r17324] Description:
Bring more improvements/changes back from file_free_space branch

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.5.8 (amazon) in debug mode
        Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe,
                                in production mode
2009-08-11 12:24:58 -05:00
Quincey Koziol
9d27b9765a [svn-r17313] Description:
Bring back various minor code cleanups from the file free space branch

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.5.8 (amazon) in debug mode
        Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe,
                                in production mode
2009-08-10 12:08:27 -05:00
Quincey Koziol
e99906f517 [svn-r17268] Description:
Bring r17266 from 1.8 branch to trunk:

    Clean up various compiler warnings from IRIX64 build

Tested on:
    Mac OS X/32 (amazon) debug & production
    (yes, I know it's not an IRIX64 system :-)
    Too minor to require h5committest
2009-07-29 20:59:24 -05:00
Neil Fortner
a60098af02 [svn-r17207] Fixed a small bug in the fractal heap code involving filtered fractal heaps.
Tested: jam, linew, smirom (h5committest)
2009-07-21 14:18:38 -05:00
Raymond Lu
2d6036f0c3 [svn-r17195] I removed H5Eprivate.h from this header file. It isn't used anywhere in the test.
Tested on jam, smirom, linew, and Boeing VMS.
2009-07-17 10:25:53 -05:00
Raymond Lu
2228b81fa2 [svn-r17178] I added a test of H5Tencode/decode for variable-length string type. This test is for
the bug fix of #1585 in last round of checkin.

Tested on jam, smirom, linew.
2009-07-13 14:04:09 -05:00
Quincey Koziol
c243e1e134 [svn-r17148] Description:
Refactor how chunked dataset information is computed, moving it earlier and
avoiding more recomputation.

Tested on:
    FreeBSD/32 6.3 (duty) in debug mode
    FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
    Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
        in debug mode
    Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
        w/C++ & FORTRAN, in production mode
    Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
        w/szip filter, in production mode
    Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
        in production mode
    Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
    Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
    Mac OS X/32 10.5.7 (amazon) in debug mode
    Mac OS X/32 10.5.7 (amazon) w/C++ & FORTRAN, w/threadsafe,
        in production mode
2009-07-02 17:34:20 -05:00
Quincey Koziol
47e4e67e3c [svn-r17146] Description:
Bring a bunch of misc. improvements & tweaks from the revise_chunks
branch back to the trunk, so that future merges won't be so painful.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.5.7 (amazon) in debug mode
        Mac OS X/32 10.5.7 (amazon) w/C++ & FORTRAN, w/threadsafe,
                                in production mode
2009-07-02 16:10:35 -05:00
Raymond Lu
afe8d149bb [svn-r17130] Corrected some typos. No test is needed. 2009-06-30 11:08:50 -05:00
Raymond Lu
66b4d3889c [svn-r17126] A revision from last round of checkin (r17119). H5Aopen_name has been deprecated. I
replaced it with H5Aopen in this round.  I also updated some hard-coded numbers with some
macros.

Tested on jam, linew, and smirom.
2009-06-29 13:17:21 -05:00
Raymond Lu
d8c0ebd428 [svn-r17119] Bug fix #1513. Reading an empty attribute caused seg fault. The flag "initialized" in
the attribute structure wan't set correctly.  It caused some confusion in H5A_read.  This
flag was actually redundant because the library can alwasy check if the data buffer is
present.  To fix it, I removed the "initialized" flag in the attribute structure and let
H5A_read check the data buffer.

Tested on jam, smirom, and linex.
2009-06-26 14:41:32 -05:00
Neil Fortner
02dc89e00b [svn-r17108] Purpose: Fix bug in H5Z_filter_info
Description:
Previously, when H5Z_filter_info was called for a filter that was not present,
it would succeed and return the information from one position past the end of
the pipeline, possibly causing a segfault.  This affected at least
H5Pget_fitler_by_id1/2, and possibly other API functions.  Fixed to properly
return failure.

Tested: jam, linew, smirom (h5committest)
2009-06-25 13:56:00 -05:00
Quincey Koziol
74af8cfa92 [svn-r17035] Description:
Add private macro for testing if an address is in the 'temporary' file
space for a file.

Tested on:
	FreeBSD/32 6.3 (duty)
	Too minor to require h5committest
2009-06-11 15:02:05 -05:00
Quincey Koziol
22243fd75d [svn-r17031] Description:
Correct latent bug in one file space allocation test which was not
getting a new file pointer when reopening a file.

	Also, add a couple more asserts to the file space allocation code in
the library to help detect this problem earlier.

Tested on:
	Linux/32 2.6 (jam) w/core VFD
2009-06-11 10:03:54 -05:00
Quincey Koziol
eda3b5015f [svn-r17030] Description:
Revert my reversion of the change to not run the 'temporary' file space
test with the family VFD.  (How's that for a checkin message :-)

Tested on:
	Linux/32 2.6 (jam)
2009-06-11 08:32:45 -05:00
Quincey Koziol
19e0ec17dd [svn-r17029] Description:
Adjust 'temporary' file space code to always be within the file's
address space, even when the file uses 32-bit addresses.  (It's not really
necessary to be within the file's address space, since objects with temporary
addresses can't be written to the file, but it can't really hurt and it makes
the testing easier)

Tested on:
        Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode and with 'make check-vfd'
2009-06-10 22:28:57 -05:00
Neil Fortner
4d2449d382 [svn-r17025] Purpose: fix bug 1593
Description:
When using H5T_copy on committed datatypes that are already open, H5T_copy would
properly use the already existing shared struct, but would still deep copy all
of the fields in that struct.  This would cause memory leaks, and in the case of
a compound containing a vlen (or reference), the change in size would cause the
size of the resulting type to be set to an incorrect value.  Changed H5T_copy to
properly avoid deep copies when using a reopened shared struct.

Tested: jam, linew, smirom (h5committest), purify on jam
2009-06-10 14:17:26 -05:00
Quincey Koziol
b2efaa9f70 [svn-r17022] Description:
Disable testing the 'temporary' space allocation code when using the
family VFD, since the test causes too many files to be opened.

Tested on:
	Linux/64 2.6 (smirom) w/check-vfd
2009-06-09 18:28:35 -05:00
Quincey Koziol
4fa1b3c1aa [svn-r17017] Description:
Rework the "proxy address" code to be more general and implement a better
"temporary address" feature, that will allow for metadata allocations to be
deferred to when the metadata is actually flushed to the file.

Tested on:
    FreeBSD/32 6.3 (duty) in debug mode
    FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
    Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
        in debug mode
    Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
        w/C++ & FORTRAN, in production mode
    Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
        w/szip filter, in production mode
    Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
        in production mode
    Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
    Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
    Mac OS X/32 10.5.7 (amazon) in debug mode
    Mac OS X/32 10.5.7 (amazon) w/C++ & FORTRAN, w/threadsafe,
        in production mode
2009-06-08 18:16:19 -05:00
Quincey Koziol
fc28993464 [svn-r16997] Description:
Change previous "depend/undepend" routine names to be "support/unsupport"
and add new "depend/undepend" routines, which make the extensible array a child
flush dependency of another piece of metadata in the file.

Tested on:
    FreeBSD/32 6.3 (duty) in debug mode
    FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
    Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
        in debug mode
    Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
        w/C++ & FORTRAN, in production mode
    Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
        w/szip filter, in production mode
    Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
        in production mode
    Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
    Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
    Mac OS X/32 10.5.7 (amazon) in debug mode
    Mac OS X/32 10.5.7 (amazon) w/C++ & FORTRAN, w/threadsafe,
        in production mode
2009-06-02 15:14:17 -05:00
Larry Knox
126dae2440 [svn-r16995] Snapshot version 1.9 release 39 2009-06-01 13:50:44 -05:00
Quincey Koziol
f824891a84 [svn-r16982] Description:
Add library private routines to allow metadata cache entries to be set as
flush dependency children on extensible array entries.  This will allow chunk
proxies to be set as child flush dependencies for the extensible array, adding
another necessary layer to the flush dependency chain for SWMR access.

Tested on:
    FreeBSD/32 6.3 (duty) in debug mode
    FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
    Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
        in debug mode
    Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
        w/C++ & FORTRAN, in production mode
    Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
        w/szip filter, in production mode
    Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
        in production mode
    Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
    Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
    Mac OS X/32 10.5.6 (amazon) in debug mode
    Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe,
        in production mode
2009-05-26 17:42:12 -05:00
Quincey Koziol
4d6fcb288a [svn-r16874] Description:
Add test for cache client 'notify' callback.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.5.6 (amazon) in debug mode
        Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe,
                                in production mode
2009-04-28 14:30:05 -05:00
Quincey Koziol
b2df2fa677 [svn-r16849] Description:
Bring r16848 from revise_chunks branch to trunk:

	Add test (and bugfixes) for detecting if a filter makes a chunk size
larger than can be encoded in a 32-bit variable (in the file).

Tested on:
       FreeBSD/32 6.3 (duty) in debug mode
	(h5committest not needed, multi-platform testing done on branch)
2009-04-23 16:52:45 -05:00
Quincey Koziol
f098d20ab9 [svn-r16847] Description:
Bring r16846 from revise_chunks branch back to trunk:

	Fix broken (for how long?) H5_ASSIGN_OVERFLOW macro to actually detect
overflows during assignments, along with several errors it [now] detected.

	Cleaned up a fix minor warnings and/or pieces of code also.

Tested on:
	FreeBSD/32 6.3 (duty) in debug mode
	(h5committest not needed - multi-platform test performed on branch)
2009-04-23 13:25:16 -05:00
Raymond Lu
be8cb6411a [svn-r16835] Allow an error class to use other class's major or minor errors. Added a test for it, too.
Tested on jam - simple change.
2009-04-22 13:39:10 -05:00
Neil Fortner
8c074d5c03 [svn-r16807] Purpose: Fix bug 1533
Description:
Previously, there was no versioning for H5Z_class_t.  This prevented applications
written for 1.6 using custom filters from being able to use the 1.8 library.
There is now an H5Z_class1_t and H5Z_class2_t to enable compatibility.  H5Zregister is
*not* versioned, it determines which version of the struct has been passed in by the
value of the first field (id or version, both are ints).

Tested: jam, linew, smirom (h5committest), jam (--with-default-api-version=v16)
2009-04-20 14:12:19 -05:00